Psyllid ID: psy7848
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | 2.2.26 [Sep-21-2011] | |||||||
| P70610 | 412 | Double C2-like domain-con | yes | N/A | 0.366 | 0.669 | 0.443 | 2e-67 | |
| P70169 | 412 | Double C2-like domain-con | yes | N/A | 0.366 | 0.669 | 0.443 | 7e-67 | |
| Q06846 | 704 | Rabphilin-3A OS=Bos tauru | no | N/A | 0.370 | 0.396 | 0.430 | 2e-66 | |
| Q9Y2J0 | 694 | Rabphilin-3A OS=Homo sapi | no | N/A | 0.375 | 0.407 | 0.424 | 2e-65 | |
| Q14184 | 412 | Double C2-like domain-con | yes | N/A | 0.366 | 0.669 | 0.432 | 3e-65 | |
| P47709 | 684 | Rabphilin-3A OS=Rattus no | no | N/A | 0.375 | 0.413 | 0.424 | 5e-65 | |
| P47708 | 681 | Rabphilin-3A OS=Mus muscu | no | N/A | 0.370 | 0.409 | 0.427 | 1e-64 | |
| Q14183 | 400 | Double C2-like domain-con | no | N/A | 0.368 | 0.695 | 0.397 | 8e-61 | |
| P70611 | 403 | Double C2-like domain-con | no | N/A | 0.376 | 0.704 | 0.388 | 3e-59 | |
| Q7TNF0 | 405 | Double C2-like domain-con | no | N/A | 0.376 | 0.701 | 0.388 | 3e-59 |
| >sp|P70610|DOC2B_RAT Double C2-like domain-containing protein beta OS=Rattus norvegicus GN=Doc2b PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 196/282 (69%), Gaps = 6/282 (2%)
Query: 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 528
T LG+++ ++ YD +LH T+ +AKGL+ MD +G +DP+ KL+L+P +++LRTKT
Sbjct: 125 TALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 587
T+NP ++E LT+Y +++ D+ ++L I V D+DK+ H+ F+GE R PL +L+P+ ++
Sbjct: 185 LRNTLNPSWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244
Query: 588 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 647
+ L K PV + E+ EE G+I ++L +S++K+ L+V +++C +L MD+NG
Sbjct: 245 TFSICLEKQLPVDKAEDKSLEER----GRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300
Query: 648 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706
+SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF E K +L+K+TL +TVWD D
Sbjct: 301 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDI 360
Query: 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748
GKSND++G + L N+KG+RL+HW D +K D + E H L+
Sbjct: 361 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402
|
Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes. Rattus norvegicus (taxid: 10116) |
| >sp|P70169|DOC2B_MOUSE Double C2-like domain-containing protein beta OS=Mus musculus GN=Doc2b PE=1 SV=2 | Back alignment and function description |
|---|
Score = 256 bits (653), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 125/282 (44%), Positives = 196/282 (69%), Gaps = 6/282 (2%)
Query: 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 528
T LG+++ ++ YD +LH T+ +AKGL+ MD +G +DP+ KL+L+P +++LRTKT
Sbjct: 125 TALGTLDFSLLYDQENNALHCTISKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 587
T+NP ++E LT+Y +++ D+ ++L I V D+DK+ H+ F+GE R PL +L+P+ ++
Sbjct: 185 LRNTLNPSWNETLTYYGITDEDMVRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244
Query: 588 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 647
+ L K PV + E+ EE G+I ++L +S++K+ L+V +++C +L MD+NG
Sbjct: 245 TFSICLEKQLPVDKAEDKSLEER----GRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300
Query: 648 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706
+SDP++K YLKPD+ K+ K+KT VK KTLNP FNEEF E K +L+K+TL +TVWD D
Sbjct: 301 YSDPYVKTYLKPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDI 360
Query: 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748
GKSND++G + L N+KG+RL+HW D +K D + E H L+
Sbjct: 361 GKSNDFIGGVVLGINAKGERLKHWFDCLKNKDKRIERWHTLT 402
|
Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes. Mus musculus (taxid: 10090) |
| >sp|Q06846|RP3A_BOVIN Rabphilin-3A OS=Bos taurus GN=RPH3A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 127/295 (43%), Positives = 197/295 (66%), Gaps = 16/295 (5%)
Query: 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 528
T LG++E ++ YD SLH T+ +AKGL+ MD +G +DP+ KL+L+P S++LRTKT
Sbjct: 401 TTLGALEFSLLYDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKT 460
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 587
T NP ++E L ++ +++ D+ ++L I V D+DK+GH+ F+GE RF L +L+P+ +
Sbjct: 461 LRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRK 520
Query: 588 DLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVN 633
+ + L + P+ R EE+V + + GKI ++L +ST++ LIV
Sbjct: 521 NFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVG 580
Query: 634 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITEL 692
+I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF + K ++L
Sbjct: 581 IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 640
Query: 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K E H L
Sbjct: 641 AKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 695
|
Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal. Bos taurus (taxid: 9913) |
| >sp|Q9Y2J0|RP3A_HUMAN Rabphilin-3A OS=Homo sapiens GN=RPH3A PE=1 SV=1 | Back alignment and function description |
|---|
Score = 251 bits (640), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 197/299 (65%), Gaps = 16/299 (5%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S T LG++E ++ YD SL T+ +AKGL+ MD +G +DP+ KL+L+P S++L
Sbjct: 387 SDEATTLGALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 446
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 583
RTKT T NP ++E L ++ +++ D+ ++L I V D+DK+GH+ F+GE RF L +L+P
Sbjct: 447 RTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKP 506
Query: 584 HISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRA 629
+ ++ + L + P+ R EE+V + + GKI ++L +ST++
Sbjct: 507 NQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERVGDIEERGKILVSLMYSTQQGG 566
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETK 688
LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF + K
Sbjct: 567 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 626
Query: 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K E H L
Sbjct: 627 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 685
|
Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal. Homo sapiens (taxid: 9606) |
| >sp|Q14184|DOC2B_HUMAN Double C2-like domain-containing protein beta OS=Homo sapiens GN=DOC2B PE=1 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (639), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 196/282 (69%), Gaps = 6/282 (2%)
Query: 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 528
T LG+++ ++ YD +LH T+ +AKGL+ MD +G +DP+ KL+L+P +++LRTKT
Sbjct: 125 TALGTLDFSLLYDQENNALHCTITKAKGLKPMDHNGLADPYVKLHLLPGASKANKLRTKT 184
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 587
T+NP ++E LT+Y +++ D+ ++L I V D+DK+ H+ F+GE R PL +L+P+ ++
Sbjct: 185 LRNTLNPTWNETLTYYGITDEDMIRKTLRISVCDEDKFRHNEFIGETRVPLKKLKPNHTK 244
Query: 588 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 647
+ L K PV + E+ EE G+I ++L +S++K+ L+V +++C +L MD+NG
Sbjct: 245 TFNICLEKQLPVDKTEDKSLEER----GRILISLKYSSQKQGLLVGIVRCAHLAAMDANG 300
Query: 648 FSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706
+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF E K +L+K++L +TVWD D
Sbjct: 301 YSDPYVKTYLRPDVDKKSKHKTAVKKKTLNPEFNEEFCYEIKHGDLAKKSLEVTVWDYDI 360
Query: 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748
GKSND++G + L ++KG+RL+HW D +K D + E H L+
Sbjct: 361 GKSNDFIGGVVLGIHAKGERLKHWFDCLKNKDKRIERWHTLT 402
|
Calcium sensor which positively regulates SNARE-dependent fusion of vesicles with membranes. Binds phospholipids in a calcium-dependent manner and may act at the priming stage of fusion by modifying membrane curvature to stimulate fusion. Involved in calcium-triggered exocytosis in chromaffin cells and calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Involved both in glucose-stimulated insulin secretion in pancreatic cells and insulin-dependent GLUT4 transport to the plasma membrane in adipocytes. Homo sapiens (taxid: 9606) |
| >sp|P47709|RP3A_RAT Rabphilin-3A OS=Rattus norvegicus GN=Rph3a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 249 bits (636), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 196/299 (65%), Gaps = 16/299 (5%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P S++L
Sbjct: 377 SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 436
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 583
RTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH+ F+GE RF L +L+
Sbjct: 437 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 496
Query: 584 HISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRA 629
+ ++ + L + P+ R EE+V + + GKI ++L +ST++
Sbjct: 497 NQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGG 556
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETK 688
LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF + K
Sbjct: 557 LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 616
Query: 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K E H L
Sbjct: 617 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 675
|
Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal. Rattus norvegicus (taxid: 10116) |
| >sp|P47708|RP3A_MOUSE Rabphilin-3A OS=Mus musculus GN=Rph3a PE=1 SV=2 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 126/295 (42%), Positives = 195/295 (66%), Gaps = 16/295 (5%)
Query: 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 528
T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P S++LRTKT
Sbjct: 378 TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKT 437
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 587
T NP ++E L ++ ++E D+ ++L I V D+DK+GH+ F+GE RF L +L+ + +
Sbjct: 438 LRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRK 497
Query: 588 DLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVN 633
+ + L + P+ R EE+V + + GKI ++L +ST++ LIV
Sbjct: 498 NFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVG 557
Query: 634 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITEL 692
+I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF + K ++L
Sbjct: 558 IIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 617
Query: 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K E H L
Sbjct: 618 AKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 672
|
Protein transport. Probably involved with Ras-related protein Rab-3A in synaptic vesicle traffic and/or synaptic vesicle fusion. Could play a role in neurotransmitter release by regulating membrane flow in the nerve terminal. Mus musculus (taxid: 10090) |
| >sp|Q14183|DOC2A_HUMAN Double C2-like domain-containing protein alpha OS=Homo sapiens GN=DOC2A PE=1 SV=5 | Back alignment and function description |
|---|
Score = 235 bits (600), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 120/302 (39%), Positives = 190/302 (62%), Gaps = 24/302 (7%)
Query: 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 528
T LG++E + YD +C+LH ++ RAKGL+ MD +G +DP+ KL+L+P +++L+TKT
Sbjct: 88 TALGTLEFDLLYDRASCTLHCSILRAKGLKPMDFNGLADPYVKLHLLPGACKANKLKTKT 147
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 587
T+NP ++E LT+ +++ D++ + L I V D+DK H+ F+GE R PL RL+P S+
Sbjct: 148 QRNTLNPVWNEDLTYSGITDDDITHKVLRIAVCDEDKLSHNEFIGEIRVPLRRLKP--SQ 205
Query: 588 DLCLNLCKHYPVP--------------------REEEVWGEEECWQHGKIFLTLCFSTKK 627
N+C VP E+ G+ + G+I L+L +S+++
Sbjct: 206 KKHFNICLERQVPLASPSSMSAALRGISCYLKELEQAEQGQGLLEERGRILLSLSYSSRR 265
Query: 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE 686
R L+V +++C +L MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF E
Sbjct: 266 RGLLVGILRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFFYE 325
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 746
+++ L+ +TL +TVWD D GKSND++G + L ++G+ +HW D ++ PD E H
Sbjct: 326 IELSTLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEARKHWSDCLQQPDAALERWHT 385
Query: 747 LS 748
L+
Sbjct: 386 LT 387
|
Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells. Homo sapiens (taxid: 9606) |
| >sp|P70611|DOC2A_RAT Double C2-like domain-containing protein alpha OS=Rattus norvegicus GN=Doc2a PE=1 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 187/304 (61%), Gaps = 20/304 (6%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S T LG++E + YD +C LH + RAKGL+ MD +G +DP+ KL+L+P +++L
Sbjct: 87 SDDTTALGTLEFDLLYDQASCMLHCRILRAKGLKPMDFNGLADPYVKLHLLPGACKANKL 146
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 583
+TKT T+NP ++E+LT+ +++ D++ + L I V D+DK H+ F+GE R PL RL+P
Sbjct: 147 KTKTQRNTLNPVWNEELTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKP 206
Query: 584 HISRDLCLNLCKHYPVPR------------------EEEVWGEEECWQHGKIFLTLCFST 625
+ + L + P+P E+ G + G+I L+L +S+
Sbjct: 207 SQKKHFNICLERQVPLPSPSSMSAALRGISCYLKELEQAEQGPGLLEERGRILLSLSYSS 266
Query: 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFA 684
++ L+V +++C +L MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF
Sbjct: 267 RRHGLLVGIVRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFF 326
Query: 685 IETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGI 744
E +++ L+ +TL +TVWD D GKSND++G + L ++G+ +HW D + PD E
Sbjct: 327 YEMELSTLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEAQKHWRDCLHQPDTAVERW 386
Query: 745 HNLS 748
H L+
Sbjct: 387 HTLT 390
|
Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells. Rattus norvegicus (taxid: 10116) |
| >sp|Q7TNF0|DOC2A_MOUSE Double C2-like domain-containing protein alpha OS=Mus musculus GN=Doc2a PE=2 SV=1 | Back alignment and function description |
|---|
Score = 230 bits (586), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 118/304 (38%), Positives = 187/304 (61%), Gaps = 20/304 (6%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S T LG++E + YD +C LH + RAKGL+ MD +G +DP+ KL+L+P +++L
Sbjct: 89 SDDTTALGTLEFDLLYDQASCMLHCRILRAKGLKPMDFNGLADPYVKLHLLPGACKANKL 148
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 583
+TKT T+NP ++E+LT+ +++ D++ + L I V D+DK H+ F+GE R PL RL+P
Sbjct: 149 KTKTQRNTLNPVWNEELTYSGITDDDITHKVLRISVCDEDKLSHNEFIGEIRVPLRRLKP 208
Query: 584 HISRDLCLNLCKHYPVPR------------------EEEVWGEEECWQHGKIFLTLCFST 625
+ + L + P+P E+ G + G+I L+L +S+
Sbjct: 209 SQKKHFNICLERQVPLPSPSSMSAALRGISCYLKELEQAEQGPGLLEERGRILLSLSYSS 268
Query: 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFA 684
++ L+V +++C +L MD NG+SDP++K YL+PD+ K+ K+KT VK KTLNP FNEEF
Sbjct: 269 RRHGLLVGIVRCAHLAAMDVNGYSDPYVKTYLRPDVDKKSKHKTCVKKKTLNPEFNEEFF 328
Query: 685 IETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGI 744
E +++ L+ +TL +TVWD D GKSND++G + L ++G+ +HW D + PD E
Sbjct: 329 YEIELSTLATKTLEVTVWDYDIGKSNDFIGGVSLGPGARGEAQKHWNDCLHQPDTALERW 388
Query: 745 HNLS 748
H L+
Sbjct: 389 HTLT 392
|
Calcium sensor which most probably regulates fusion of vesicles with membranes. Binds calcium and phospholipids. May be involved in calcium dependent neurotransmitter release through the interaction with UNC13A. May be involved in calcium-dependent spontaneous release of neurotransmitter in absence of action potentials in neuronal cells. Regulates Ca(2+)-dependent secretory lysosome exocytosis in mast cells. Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| 340712605 | 795 | PREDICTED: rabphilin-3A-like [Bombus ter | 0.828 | 0.786 | 0.351 | 1e-112 | |
| 350399907 | 795 | PREDICTED: rabphilin-3A-like [Bombus imp | 0.828 | 0.786 | 0.350 | 1e-112 | |
| 405977354 | 638 | Double C2-like domain-containing protein | 0.779 | 0.921 | 0.357 | 1e-107 | |
| 291406997 | 694 | PREDICTED: Rabphilin 3A homolog (mouse)- | 0.846 | 0.919 | 0.347 | 1e-100 | |
| 443691870 | 672 | Rabphilin [Capitella teleta] | 0.839 | 0.941 | 0.353 | 1e-100 | |
| 431914212 | 671 | Rabphilin-3A [Pteropus alecto] | 0.816 | 0.918 | 0.339 | 1e-100 | |
| 242009815 | 1048 | hypothetical protein Phum_PHUM215280 [Pe | 0.363 | 0.261 | 0.610 | 1e-100 | |
| 348554373 | 688 | PREDICTED: rabphilin-3A-like isoform 2 [ | 0.816 | 0.895 | 0.332 | 1e-100 | |
| 348554371 | 692 | PREDICTED: rabphilin-3A-like isoform 1 [ | 0.816 | 0.890 | 0.331 | 2e-99 | |
| 301613932 | 671 | PREDICTED: rabphilin-3A-like, partial [X | 0.803 | 0.903 | 0.333 | 2e-98 |
| >gi|340712605|ref|XP_003394846.1| PREDICTED: rabphilin-3A-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 287/817 (35%), Positives = 403/817 (49%), Gaps = 192/817 (23%)
Query: 67 RLQTGWSVKAGQL---------------RRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQ 111
+LQTGWSVK G L R + L EQ+ I +VI+RAEAL+ EQ
Sbjct: 27 KLQTGWSVKTGSLDSKWGTYSNSYSSGTNRCAQSFVLTEDEQQTIIQVIQRAEALNLSEQ 86
Query: 112 ERVGRLVERVDNMKRNVT------------------GGAAAAHACALCGDKFSPIFDRLG 153
ER+GRLVER++NMKRNV A +CALCG+KF +
Sbjct: 87 ERIGRLVERLENMKRNVCIVTTTRLNERRRCSSRCLNSAHCVCSCALCGEKFGAVL---- 142
Query: 154 LFGAKCLVCHDCRGGVCQKCGIES---------VSASKK------------------ENI 186
GA +C DCR +CQKCGIE+ VSA+++ +
Sbjct: 143 --GASANLCKDCRKYICQKCGIETNELNSILTNVSATREKTQERTAMQRIVSRSSSGQKQ 200
Query: 187 WLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLPKYT 246
+LC+ICAE+REMWKKS AWF K G+PKY
Sbjct: 201 FLCRICAESREMWKKSGAWFLK--------------------------------GMPKYI 228
Query: 247 IPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSE-DNSSSDEEDAR---LARSKQVV 302
+P+K K R I K TW++ + +S+E +SSSDEE R LAR +
Sbjct: 229 LPEK----KERGWSRSIH--KTSTWTIGGNKSLESAEPQDSSSDEEVTRRLALARGQ--- 279
Query: 303 SDARATCP-NREVVTTARSSYPCSEEEEEEEVETDAEKSPSLK---------------SI 346
SD+ ++ N++ +TT +Y S + T + L ++
Sbjct: 280 SDSLSSLQRNQDSITTK--TYSLSSNSAQPTSSTSKSRGQRLSPLNSREECLDQLDRSTL 337
Query: 347 DIFTAISEFT-------------SIANVSDTEQPIVIPIRKI---------ASGGSVKLE 384
I + S + + +N S TEQ + I + + KLE
Sbjct: 338 SITSQCSRLSPSPTSPRSRISLRASSNDSQTEQHVSFEDEIIDDKNKKLEDINEATCKLE 397
Query: 385 PQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQ 444
+P S S+ S + + P++ T+ + E + N
Sbjct: 398 INLCDQPKS---SQILSFRSNFTTVPMIPTTTMTIVSMEQVPEQSQVYEKCIDQERNQSS 454
Query: 445 ESSGTLKRG----VITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM 500
G L ++ ++ + T Q N G++E+ + YD TT L + RA+GL+ M
Sbjct: 455 SEQGNLHSNNLIDLVRQQTPEYETRQ---NYGTLEVALRYDPTTQCLQCKVERARGLQPM 511
Query: 501 DIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLH 557
DIHG +DPFCKLN++P + T+ RLRTKT +T +PEF+E L FY +ETD+ + ++LH
Sbjct: 512 DIHGLADPFCKLNILPVDIVATTKRLRTKTVHKTRDPEFNETLNFYGTTETDIWNGKALH 571
Query: 558 ILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKI 617
IL+L DD G DFLGEA+FPL+ L+PH ++ + L HY V EE WG + G+I
Sbjct: 572 ILILQDDPAGQDFLGEAKFPLHELQPHQTKHYNVPLQDHYTVDNEEAAWGVISSGR-GQI 630
Query: 618 FLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYL-------------------- 657
++L + T++RAL V + + TNL+PMDSNGFSDPF+KL L
Sbjct: 631 QVSLSYCTRRRALTVTIHRATNLLPMDSNGFSDPFVKLCLIENVTNNHRQRVFDYSIARI 690
Query: 658 -------KPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSN 710
K ++ T +KWKTLNP +NEEFA T++T+L K TL +TVWDKD+GKSN
Sbjct: 691 TAKKLVSKKTTNRNAQSTTIKWKTLNPEWNEEFAFATRLTDLMKFTLYLTVWDKDFGKSN 750
Query: 711 DYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
DYLG LEL CNSKG RLRHW+D++K+PDH+H HNL
Sbjct: 751 DYLGGLELSCNSKGARLRHWIDVIKFPDHRHRAWHNL 787
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350399907|ref|XP_003485677.1| PREDICTED: rabphilin-3A-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 286/817 (35%), Positives = 402/817 (49%), Gaps = 192/817 (23%)
Query: 67 RLQTGWSVKAGQL---------------RRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQ 111
+LQTGWSVK G L R + L EQ+ I +VI+RAEAL+ EQ
Sbjct: 27 KLQTGWSVKTGSLDSKWGTYSNSYSSGTNRCAQSFVLTEEEQQTIIQVIQRAEALNLSEQ 86
Query: 112 ERVGRLVERVDNMKRNVT------------------GGAAAAHACALCGDKFSPIFDRLG 153
ER+GRLVER++NMKRNV A +CALCG+KF +
Sbjct: 87 ERIGRLVERLENMKRNVCIVTTTRLNERRRCSSRCLNSAHCVCSCALCGEKFGAVL---- 142
Query: 154 LFGAKCLVCHDCRGGVCQKCGIES---------VSASKK------------------ENI 186
GA +C DCR +CQKCGIE+ VS +++ +
Sbjct: 143 --GASANLCKDCRKYICQKCGIETNELNSILTNVSTTRERTQERTAMQRIVSRSSSGQRQ 200
Query: 187 WLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLPKYT 246
+LC+ICAE+REMWKKS AWF K G+PKY
Sbjct: 201 FLCRICAESREMWKKSGAWFLK--------------------------------GMPKYI 228
Query: 247 IPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSE-DNSSSDEEDAR---LARSKQVV 302
+P+K K R I K TW++ + +S+E +SSSDEE R LAR +
Sbjct: 229 LPEK----KERGWSRSIH--KTSTWTIGGNKSLESAEPQDSSSDEEVTRRLALARGQ--- 279
Query: 303 SDARATCP-NREVVTTARSSYPCSEEEEEEEVETDAEKSPSLK---------------SI 346
SD+ ++ N++ +TT +Y S + T + L ++
Sbjct: 280 SDSLSSLQRNQDSITTK--TYSSSSNSAQPTSSTSKSRGQRLSPLNSREECLDQLDRSTL 337
Query: 347 DIFTAISEFT-------------SIANVSDTEQPIVIPIRKI---------ASGGSVKLE 384
I + S + + +N S TEQ + I + + KLE
Sbjct: 338 SITSQCSRLSPSPTSPRSRISLKASSNDSQTEQHVSFEDEIIDDKNKKLEDINEATCKLE 397
Query: 385 PQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQ 444
+P S S+ S + + P++ T+ + E + N
Sbjct: 398 INLCDQPKS---SQILSFRSNFTTVPMIPTTTMTIVSMEQVPEQSQVYEKCIDQERNQSS 454
Query: 445 ESSGTLKRG----VITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM 500
G L ++ ++ + T Q N G++E+T+ YD TT L + RA+GL+ M
Sbjct: 455 SEQGNLHSNNQIDLVRQQTPEYETRQ---NYGTLEVTLRYDPTTQCLQCKVERARGLQPM 511
Query: 501 DIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLH 557
DIHG +DPFCKLN++P + T+ RLRTKT +T +PEF+E L FY +ETD+ + ++LH
Sbjct: 512 DIHGLADPFCKLNILPVDIVATTKRLRTKTVHKTRDPEFNETLNFYGTTETDIWNGKALH 571
Query: 558 ILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKI 617
IL+L DD G DFLGEA+FPL+ L+PH ++ + L HY V EE WG + G+I
Sbjct: 572 ILILQDDPAGQDFLGEAKFPLHELQPHQTKHYNVPLQDHYAVDNEEAAWGVISSGR-GQI 630
Query: 618 FLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYL-------------------- 657
++L + T++RAL V + + TNL+PMDSNGFSDPF+KL L
Sbjct: 631 QVSLSYCTRRRALTVTIHRATNLLPMDSNGFSDPFVKLCLIENVTNNHRQRVFDYSIARI 690
Query: 658 -------KPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSN 710
K ++ T +KWKTLNP +NEEF T++T+L K TL +TVWDKD+GKSN
Sbjct: 691 TAKKLVSKKTTNRNAQSTTIKWKTLNPEWNEEFTFATRLTDLMKFTLYLTVWDKDFGKSN 750
Query: 711 DYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
DYLG LEL CNSKG RLRHW+D++K+PDH+H HNL
Sbjct: 751 DYLGGLELSCNSKGARLRHWIDVIKFPDHRHRAWHNL 787
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|405977354|gb|EKC41811.1| Double C2-like domain-containing protein beta [Crassostrea gigas] | Back alignment and taxonomy information |
|---|
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 250/700 (35%), Positives = 373/700 (53%), Gaps = 112/700 (16%)
Query: 67 RLQTGWSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKR 126
+L TGWSV +L + K + L EQE I VI +A+ LD +EQER+GRLVE+++NMK+
Sbjct: 26 KLGTGWSVHTNKLSTFHKGDQLSMEEQEHIMNVIAKADYLDQVEQERIGRLVEKLENMKK 85
Query: 127 NVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENI 186
N G C LCGD+F GL GA C DC+ VC KCGI++ + S K+ +
Sbjct: 86 NAMGNGQT--QCILCGDEF-------GLLGASPTHCDDCKNAVCTKCGIDTFN-SNKQQL 135
Query: 187 WLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLPKYT 246
WLCKIC+E RE+WK+S AWFFK G+PKY
Sbjct: 136 WLCKICSEYREVWKRSGAWFFK--------------------------------GIPKYV 163
Query: 247 IP-KKTQPEKLAFNR-----------RPIENLKPPTWSLKIAS----ANKSSEDNSSSDE 290
+P KK + KLA + RP TWS AS S +++SSS +
Sbjct: 164 LPEKKLETSKLAGQKGHKEMRGSMRSRPGSVRGYNTWSRGRASHASYGESSEQESSSSSD 223
Query: 291 EDARLARSKQVV-SDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPSLKSIDIF 349
++ + + K V S N V ++A Y + + E S+ S + +
Sbjct: 224 DEVSIGKRKTVKHSGDSGESDNISVTSSASGQYYGN--------HVNKEPRSSITSSNYY 275
Query: 350 TAISEFTSIANVSDTEQPIVIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSS 409
T + D + + GG++ P P K + A + +
Sbjct: 276 GGQLSATESSRGDDVHEDT---DNESLGGGTIHHATNGSHDPCPP---SKLADEADIDDA 329
Query: 410 PLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADT 469
P + +E+++S SP SP ++G+L
Sbjct: 330 FTKYGKNHPHSEHEDNLS--SPESP-----------TNGSL------------------- 357
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
GS+E+++ YD+ +LH ++ RA+GL+AMD +G SDP+ KL+L+P S++LRTKT
Sbjct: 358 --GSLEMSLLYDAANNALHCSIVRARGLKAMDSNGLSDPYVKLHLLPGASKSNKLRTKTI 415
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDL 589
+T+NP++++ LT+Y ++E D+ ++L + VLD+D +G DF+GE R PL L+PH ++
Sbjct: 416 HKTLNPDWNKTLTYYGITEDDMYKKTLRLAVLDEDAFGFDFIGETRVPLKTLQPHQTKHF 475
Query: 590 CLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS 649
+ L K P +++++ + GKI L L +ST K+ L+VN+++C L DSNG+S
Sbjct: 476 NVCLEKAIPTDKDDDLLSHDR----GKILLGLKYSTAKQCLVVNVVRCVELAACDSNGYS 531
Query: 650 DPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708
DP++KLYLKPD KR K+KT +K KTLNP +NEEF + K EL+K+TL ITVWD+D GK
Sbjct: 532 DPYVKLYLKPDPEKRSKFKTAIKKKTLNPEYNEEFIYDIKHNELAKKTLEITVWDRDIGK 591
Query: 709 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748
+ND++G ++L NSKG RL+HW D +K PDHK E H L+
Sbjct: 592 ANDFIGGVQLGINSKGQRLKHWYDTLKNPDHKFERWHILA 631
|
Source: Crassostrea gigas Species: Crassostrea gigas Genus: Crassostrea Family: Ostreidae Order: Ostreoida Class: Bivalvia Phylum: Mollusca Superkingdom: Eukaryota |
| >gi|291406997|ref|XP_002719822.1| PREDICTED: Rabphilin 3A homolog (mouse)-like [Oryctolagus cuniculus] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 245/705 (34%), Positives = 367/705 (52%), Gaps = 67/705 (9%)
Query: 67 RLQTGWSVK-AGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMK 125
+LQ GWSV +GQ R +K E L E+E I VI RAE ++ +EQER+GRLV+R++NMK
Sbjct: 24 KLQAGWSVHPSGQHDRQRKQEELTDEEKEIINRVIARAEKMEEMEQERIGRLVDRLENMK 83
Query: 126 RNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKEN 185
++V G + C LCG++ LG+ G+ C+VC DC+ VC KCG+E+ S ++
Sbjct: 84 KSVAGDGV--NRCILCGEQ-------LGVLGSACVVCEDCKKNVCTKCGVET-SNNRPHP 133
Query: 186 IWLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLPKY 245
+WLCKIC E RE+WK+S AWFFK G P + L + +
Sbjct: 134 VWLCKICIEQREVWKRSGAWFFK--GFPKQVLPQPMP----------IKKTKPQQPASDP 181
Query: 246 TIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSE--DNSSSDEEDARLARSKQVVS 303
P++ PE + R P W L S S+ S L +
Sbjct: 182 AAPEQPTPEPKSSARAPARGDTGDGWVLLAVSRRPSTPTLHGPFSTHFLLFLPGPDPASA 241
Query: 304 DARAT-CPNREVVTTARSSYPCSEEEEEEEVETDAEKSPS--LKSIDIFTAISEFTSIAN 360
R + P + AR S PC E E DA +SP+ ++ + + S+ +
Sbjct: 242 PGRGSYGPPARRASEARMS-PCGREAESSGAAGDASRSPAGLRRANSVQASRPSPASLQS 300
Query: 361 VSDTE--QPIVIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLP 418
+ + QP V P S G+ + PR + FS+ AT
Sbjct: 301 PAPPQLGQPEVAPPSDPGSTGA-----PAPPREERMGGAGGFSAVATR------------ 343
Query: 419 LTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTV 478
+ + P P S EE+ S T LG++E ++
Sbjct: 344 ---EDRAAHPPGPFSQASAAAPQPAAAPPRQPPPPEEDEEEANSYDSDEATTLGALEFSL 400
Query: 479 TYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 538
YD SLH T+ +AKGL+ MD +G +DP+ KL+L+P S++LRTKT T NP ++
Sbjct: 401 LYDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWN 460
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISRDLCLNLCKHY 597
E L ++ ++E D+ ++L I V D+DK+GH+ F+GE RF L +L+P+ ++ + L +
Sbjct: 461 ETLVYHGITEEDVQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVI 520
Query: 598 PVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPM 643
P+ R EE+V + + GKI ++L +ST++ LIV +I+C +L M
Sbjct: 521 PMKRAGTTGSARGMALYEEEQVERVGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAM 580
Query: 644 DSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702
D+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF + K ++L+K++L I+VW
Sbjct: 581 DANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVW 640
Query: 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
D D GKSNDY+G +L ++KG+RLRHW + +K D K E H L
Sbjct: 641 DYDIGKSNDYIGGCQLGISAKGERLRHWYECLKNKDKKIERWHQL 685
|
Source: Oryctolagus cuniculus Species: Oryctolagus cuniculus Genus: Oryctolagus Family: Leporidae Order: Lagomorpha Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|443691870|gb|ELT93620.1| Rabphilin [Capitella teleta] | Back alignment and taxonomy information |
|---|
Score = 373 bits (958), Expect = e-100, Method: Compositional matrix adjust.
Identities = 247/699 (35%), Positives = 374/699 (53%), Gaps = 66/699 (9%)
Query: 67 RLQTGWSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKR 126
+L +GWSV +++ +++ E L+ EQE I VIKRAE +D +E ERVGRLV+R++NMK+
Sbjct: 23 KLGSGWSVHTNKMQGFRREEQLNCDEQECIMRVIKRAEMIDNLEMERVGRLVDRLENMKK 82
Query: 127 NVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENI 186
N G + C LC D+F GL A C DC+ VC KCG+++ + S + +
Sbjct: 83 NSIGNGNSQ--CVLCADEF-------GLLAASPTYCDDCKKAVCTKCGVDTFN-SHHQPL 132
Query: 187 WLCKICAETREMWKKSNAWFFKVSGLPYECL-------DHYTTEAVSGLPYECLDHYTTE 239
WLCKIC+E RE+WK+S AWFFK G+P L D + +S ++ +
Sbjct: 133 WLCKICSENRELWKRSGAWFFK--GIPKHVLPSKACKGDSSASSHLSPGNHKFAAPKSRA 190
Query: 240 AGLPKYTIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNS-SSDEEDARLARS 298
G P + P ++N TWS S +S S D
Sbjct: 191 KGSPSGGVKGNATPTPRSYN----------TWSRTGGSHTVGKAQSSVHSSLFDCLSGLQ 240
Query: 299 KQVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPSLKSIDIFTAISEFTSI 358
Q + RA R + RS+ + E + T ++E SI
Sbjct: 241 DQPL---RAVSRKRSQIQMMRSASDAGVAQNEAK-----------------TPVTESDSI 280
Query: 359 A-NVSDTEQPIVIPIRKIASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTL 417
+ S + P+ S GS + +P S +S + + + +S +
Sbjct: 281 SIGSSRSNNPLY------DSFGSRGRGRELYPDQISATESSREDNYKDFDTESDISSNAD 334
Query: 418 PLTVNEN--SISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFV-TSQADTNLGSI 474
L+ N + S + V+ + +G N++Q S G+ V EE S + T+LG++
Sbjct: 335 ALSRNNSMRSQTLVAESHDVVDGR-NSRQPSQGSYGPEVTEEEAPLSSPDSDSGTSLGTL 393
Query: 475 ELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 534
E ++ YDS+ +LH T+ RA+GLRAMD +G SDP+CKL+L+P S +LRTKT +T+N
Sbjct: 394 EFSLLYDSSNNALHCTISRARGLRAMDKNGFSDPYCKLHLLPGASKSFKLRTKTLPKTLN 453
Query: 535 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLC 594
P+++E LT+Y ++E D ++L + +LD+D +G DF+GE R PL L+ +++ + L
Sbjct: 454 PDWNETLTYYGITEDDCRRKTLRLSILDEDTFGSDFIGETRVPLKLLKTEQTKNFSVYLE 513
Query: 595 KHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIK 654
+ +++E +E G+I L L FS++K+ V +++C+ L MDSNG+SDP++K
Sbjct: 514 RKQIDEKQDENDPDE----RGRILLNLRFSSQKQKFTVRVVRCSALAAMDSNGYSDPYVK 569
Query: 655 LYLKPD-LHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYL 713
+YLKPD K KYKT K +TLNP +NEEF + EL K+TL ITVWDKD GK NDY+
Sbjct: 570 VYLKPDKGKKSKYKTTTKKRTLNPEYNEEFHYDISQPELDKKTLEITVWDKDIGKQNDYI 629
Query: 714 GCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752
G ++L +KGDRLRHW +++K PD HE H LS L
Sbjct: 630 GGVQLGNQAKGDRLRHWNEVLKIPDRNHEHWHPLSADGL 668
|
Source: Capitella teleta Species: Capitella teleta Genus: Capitella Family: Capitellidae Order: Capitellida Class: Polychaeta Phylum: Annelida Superkingdom: Eukaryota |
| >gi|431914212|gb|ELK15470.1| Rabphilin-3A [Pteropus alecto] | Back alignment and taxonomy information |
|---|
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 239/704 (33%), Positives = 359/704 (50%), Gaps = 88/704 (12%)
Query: 67 RLQTGWSVK-AGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMK 125
+LQ GWSV GQ R +K E L E+E I VI RAE ++ +EQER+GRLV+R++NM+
Sbjct: 24 KLQAGWSVHPGGQPDRQRKQEELTDEEKEIINRVIARAEKMEEMEQERIGRLVDRLENMR 83
Query: 126 RNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKEN 185
+NV G + C LCG++ LG+ G+ C+VC DC+ VC KCG+E+ S ++
Sbjct: 84 KNVAG--DGVNRCILCGEQ-------LGILGSACVVCEDCKKNVCTKCGVET-SNNRPHP 133
Query: 186 IWLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLPKY 245
+WLCKIC E RE+WK+S AWFFK G PK
Sbjct: 134 VWLCKICIEQREVWKRSGAWFFK--------------------------------GFPKQ 161
Query: 246 TIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNSSSDEEDARLARSKQVVSDA 305
+P QP + + + +P + ++ + D ED R K A
Sbjct: 162 VLP---QPMPIKKTKPQLPVSEPAAPEQPASEPKHTARAPTRGDAEDRRGPGQKPGPDPA 218
Query: 306 RATCPNREVVTTARSSY-PCSEEEEEEEVETDAEKSPSLKSIDIFTAISEFTSIANVSDT 364
A+ R SY P E + + S S TA S A
Sbjct: 219 SAS---------GRGSYGPPVRRASEARMSSSGRDSESWDQGHGATAGDSSRSPAG---- 265
Query: 365 EQPIVIPIRKIASGGSVKLEPQSF-----PRPTSPVDSEKFSSSATVRSSPLMSRHTLPL 419
+R+ S + + P S P+P P + S + P R
Sbjct: 266 -------LRRANSVQAARPAPTSMQSPAPPQPGQPEVAPSDSGYIGATAPPREERMGGVG 318
Query: 420 TVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVT 479
T + + P P S + + EE+ S T LG++E ++
Sbjct: 319 TREDRAAHPPGPYSQVSAAAPQPATAPARQPPPPEEDEEEANSYDSDEATTLGALEFSLL 378
Query: 480 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHE 539
YD SLH T+ +AKGL+ MD +G +DP+ KL+L+P S++LRTKT T NP ++E
Sbjct: 379 YDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPIWNE 438
Query: 540 KLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISRDLCLNLCKHYP 598
L ++ +++ D+ ++L I V D+DK+GH+ F+GE RF L +L+P+ ++ + L + P
Sbjct: 439 TLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICLERVIP 498
Query: 599 VPR--------------EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD 644
+ R EE+V + + GKI ++L +ST++ LIV +I+C +L MD
Sbjct: 499 MKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMD 558
Query: 645 SNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703
+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF + K ++L+K++L I+VWD
Sbjct: 559 ANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD 618
Query: 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
D GKSNDY+G +L ++KG+RL+HW + +K D K E H L
Sbjct: 619 YDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQL 662
|
Source: Pteropus alecto Species: Pteropus alecto Genus: Pteropus Family: Pteropodidae Order: Chiroptera Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|242009815|ref|XP_002425678.1| hypothetical protein Phum_PHUM215280 [Pediculus humanus corporis] gi|212509571|gb|EEB12940.1| hypothetical protein Phum_PHUM215280 [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 168/275 (61%), Positives = 217/275 (78%), Gaps = 1/275 (0%)
Query: 468 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTK 527
+ LG++E+++ YD +LH TLHR KGLRA DI+G +DPFCKLN++P TS RL+TK
Sbjct: 565 NAQLGTLEISLWYDPVRSALHCTLHRGKGLRATDINGLADPFCKLNILPTNATSFRLKTK 624
Query: 528 TCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISR 587
T +TINPEF+E + FY ++E D+ ++LHILVLDDDKYG+DFLGEAR PL R+ ++
Sbjct: 625 TVHKTINPEFNETVNFYGITEMDIQKKTLHILVLDDDKYGNDFLGEARIPLFRVGAKQTK 684
Query: 588 DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG 647
+ + L KHY V E +VWGE+ W GKI +TLC+STKKRALIV + +CTNL+PMD+NG
Sbjct: 685 HITVFLEKHYQVDDENKVWGEDN-WNRGKILITLCYSTKKRALIVVIGRCTNLLPMDNNG 743
Query: 648 FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707
SDPF+KL+L D + +KYKT VKWK LNP+FNEEF ETK+T+L KQTL++TVWDKDYG
Sbjct: 744 LSDPFVKLHLSSDPNHKKYKTSVKWKNLNPVFNEEFVFETKMTDLPKQTLILTVWDKDYG 803
Query: 708 KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742
KSNDYLG LEL SKG+RL+HW+D++K+PDHKHE
Sbjct: 804 KSNDYLGGLELGWKSKGERLKHWIDVIKFPDHKHE 838
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|348554373|ref|XP_003463000.1| PREDICTED: rabphilin-3A-like isoform 2 [Cavia porcellus] | Back alignment and taxonomy information |
|---|
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 240/721 (33%), Positives = 367/721 (50%), Gaps = 105/721 (14%)
Query: 67 RLQTGWSVK-AGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMK 125
RLQ GWSV +GQ R +K E L E+E I VI RAE ++ +EQER+GRLV+R++NM+
Sbjct: 24 RLQAGWSVHPSGQTDRQRKQEELTDEEKEIINRVIARAEKMEEMEQERIGRLVDRLENMR 83
Query: 126 RNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKEN 185
+NV G + C LCG++ LG+ G+ C+VC DC+ VC KCG+E+ S ++
Sbjct: 84 KNVAGDGV--NRCILCGEQ-------LGMLGSACVVCEDCKKNVCTKCGVET-SNNRPHP 133
Query: 186 IWLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLPKY 245
+WLCKIC E RE+WK+S AWFFK G P + L P+
Sbjct: 134 VWLCKICLEQREVWKRSGAWFFK------------------GFPKQVL---------PQP 166
Query: 246 TIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNSSSDEE---DARLARSK--- 299
KKT+P++ +E P A A +ED ++ D A +
Sbjct: 167 MPIKKTKPQQPVTEPAGLEQPAPEPKHTARAPARGDTEDRRGPGQKPGPDPASAPGRGSY 226
Query: 300 ----QVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPS----LKSIDIFTA 351
+ S+AR T RE S + DA +SP+ S+
Sbjct: 227 GPPVRRASEARMTPAGRESE---------SWDHGHGGGAADASRSPAGLRRTNSVQASRP 277
Query: 352 ISEFTSIANVSDTEQPIVIPIRKIASGGSVKLEPQ---------SFPRPTSPVDSEKFSS 402
+ P + A G + + Q +P T+PV E+ +
Sbjct: 278 AAASGPSPAPPQPGPPGPAGGTRAAPGPAGRFPDQRAEVATGDPGYPGVTAPVREERTGA 337
Query: 403 SATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYF 462
+ R++P ++ + PL P +S
Sbjct: 338 AREERAAPTAGPYSQASATVPQPATSARPLPPEEEEEEANSYDSDEA------------- 384
Query: 463 VTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSH 522
T LG++E ++ YD SL T+ +AKGL+ MD +G +DP+ KL+L+P S+
Sbjct: 385 ------TTLGALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSN 438
Query: 523 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRL 581
+LRTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH+ F+GE RF L +L
Sbjct: 439 KLRTKTLRNTRNPIWNETLVYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 498
Query: 582 RPHISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKK 627
+P+ ++ + L + P+ R EE+V + + GKI ++L +ST++
Sbjct: 499 KPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQ 558
Query: 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE 686
LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF +
Sbjct: 559 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 618
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 746
K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D + E H
Sbjct: 619 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKRIERWHQ 678
Query: 747 L 747
L
Sbjct: 679 L 679
|
Source: Cavia porcellus Species: Cavia porcellus Genus: Cavia Family: Caviidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|348554371|ref|XP_003462999.1| PREDICTED: rabphilin-3A-like isoform 1 [Cavia porcellus] | Back alignment and taxonomy information |
|---|
Score = 370 bits (949), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 239/721 (33%), Positives = 367/721 (50%), Gaps = 105/721 (14%)
Query: 67 RLQTGWSVK-AGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMK 125
+LQ GWSV +GQ R +K E L E+E I VI RAE ++ +EQER+GRLV+R++NM+
Sbjct: 28 QLQAGWSVHPSGQTDRQRKQEELTDEEKEIINRVIARAEKMEEMEQERIGRLVDRLENMR 87
Query: 126 RNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKEN 185
+NV G + C LCG++ LG+ G+ C+VC DC+ VC KCG+E+ S ++
Sbjct: 88 KNVAGDGV--NRCILCGEQ-------LGMLGSACVVCEDCKKNVCTKCGVET-SNNRPHP 137
Query: 186 IWLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLPKY 245
+WLCKIC E RE+WK+S AWFFK G P + L P+
Sbjct: 138 VWLCKICLEQREVWKRSGAWFFK------------------GFPKQVL---------PQP 170
Query: 246 TIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNSSSDEE---DARLARSK--- 299
KKT+P++ +E P A A +ED ++ D A +
Sbjct: 171 MPIKKTKPQQPVTEPAGLEQPAPEPKHTARAPARGDTEDRRGPGQKPGPDPASAPGRGSY 230
Query: 300 ----QVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPS----LKSIDIFTA 351
+ S+AR T RE S + DA +SP+ S+
Sbjct: 231 GPPVRRASEARMTPAGRESE---------SWDHGHGGGAADASRSPAGLRRTNSVQASRP 281
Query: 352 ISEFTSIANVSDTEQPIVIPIRKIASGGSVKLEPQ---------SFPRPTSPVDSEKFSS 402
+ P + A G + + Q +P T+PV E+ +
Sbjct: 282 AAASGPSPAPPQPGPPGPAGGTRAAPGPAGRFPDQRAEVATGDPGYPGVTAPVREERTGA 341
Query: 403 SATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYF 462
+ R++P ++ + PL P +S
Sbjct: 342 AREERAAPTAGPYSQASATVPQPATSARPLPPEEEEEEANSYDSDEA------------- 388
Query: 463 VTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSH 522
T LG++E ++ YD SL T+ +AKGL+ MD +G +DP+ KL+L+P S+
Sbjct: 389 ------TTLGALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLPGASKSN 442
Query: 523 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRL 581
+LRTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH+ F+GE RF L +L
Sbjct: 443 KLRTKTLRNTRNPIWNETLVYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 502
Query: 582 RPHISRDLCLNLCKHYPVPR--------------EEEVWGEEECWQHGKIFLTLCFSTKK 627
+P+ ++ + L + P+ R EE+V + + GKI ++L +ST++
Sbjct: 503 KPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSLMYSTQQ 562
Query: 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE 686
LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNEEF +
Sbjct: 563 GGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD 622
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 746
K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D + E H
Sbjct: 623 IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKRIERWHQ 682
Query: 747 L 747
L
Sbjct: 683 L 683
|
Source: Cavia porcellus Species: Cavia porcellus Genus: Cavia Family: Caviidae Order: Rodentia Class: Mammalia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|301613932|ref|XP_002936460.1| PREDICTED: rabphilin-3A-like, partial [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 367 bits (941), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 246/738 (33%), Positives = 369/738 (50%), Gaps = 132/738 (17%)
Query: 64 FVHRLQTGWSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDN 123
V RL GWSV R +K E L E+E I VI RA ++ +EQER+GRLV+ +++
Sbjct: 3 LVSRLDAGWSVHPNNQERQRKHEELTDEEKEIINRVIARAAKMEEMEQERIGRLVDNLED 62
Query: 124 MKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKK 183
M++ VTG + C LCG++ LGL G KC+VC DC+ VC KCG++S S+
Sbjct: 63 MRKTVTGDGV--NRCILCGEQ-------LGLPGTKCVVCEDCKKNVCTKCGVQS--NSRP 111
Query: 184 ENIWLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEAGLP 243
+IWLCKIC+E RE+WK+S AWFFK G P
Sbjct: 112 HSIWLCKICSEQREVWKRSGAWFFK--------------------------------GFP 139
Query: 244 KYTIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNSSSDEEDARLARSKQVVS 303
K+ +P+ P+ KP K S + S +E R R++
Sbjct: 140 KHVLPQPI----------PVNKSKP----------QKPSAVSEDSGQEQKRYPRTQSRAQ 179
Query: 304 DARATCPNREVVTT-------ARSSYP-------------CSEEEEEEE-------VETD 336
A P++E T R++YP SE E EE V+ D
Sbjct: 180 VELAAQPDQEPYETESTAANPGRTNYPPPARKAESRMAPSGSEYEGEETRDSSYGGVDND 239
Query: 337 AEKSPS-LKSIDIFTAISEFTSI--ANVSDTEQPIVIPIRKIASGGSVKLEPQSFPRPTS 393
+SP +K +++ +N+ T+Q P + P+ T
Sbjct: 240 INRSPGGVKRGSSVQGTRPTSAVQGSNIQPTQQASARPAARPTPANRF---PEEQGGTTL 296
Query: 394 PVDSEKFSSSATVRS-------SPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQES 446
P + + SA+V +P R PL + S V ++ TQ E
Sbjct: 297 PASQPESTYSASVPRNEKADSFTPQGVRQDRPLRQAASYTSSVPTVAAPSARQPQTQDEE 356
Query: 447 SGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS 506
EE+ S T LGS+E ++ YD SLH + +AKGL+ MD +G +
Sbjct: 357 ----------EEEANSYDSDEATTLGSLEFSLFYDQENNSLHCGIIKAKGLKPMDSNGLA 406
Query: 507 DPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566
DP+ KL+L+P +++LRTKT T NP ++E L ++ +++ +L ++L I V D+DK+
Sbjct: 407 DPYVKLHLLPGASKANKLRTKTLRNTRNPIWNETLVYHGITDEELQRKTLRISVCDEDKF 466
Query: 567 GHD-FLGEARFPLNRLRPHISRDLCLNLCKHYPVPR---------------EEEVWGEEE 610
GH+ F+GE RF L +L+P+ + + L + P+ R E + G+ E
Sbjct: 467 GHNEFIGETRFSLKKLKPNQKKSFNVCLERVIPMKRAGTTGSVRGMALYEDENDRGGDVE 526
Query: 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTG 669
+ GKI ++L ++T++ LIV +++C +L MD+NG+SDPF+KL+LKPD+ K+ K KT
Sbjct: 527 --ERGKILVSLMYNTQQGGLIVGIVRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKNKTQ 584
Query: 670 VKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRH 729
+K KTLNP FNEEF E K ++L+K+ L ++VWD D GKSNDY+G +L N+KG+RL+H
Sbjct: 585 IKKKTLNPEFNEEFFYEIKHSDLAKKQLDVSVWDYDIGKSNDYIGGCQLGINAKGERLKH 644
Query: 730 WVDMMKYPDHKHEGIHNL 747
W + +K D K E H L
Sbjct: 645 WYECLKNKDKKIERWHVL 662
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 754 | ||||||
| FB|FBgn0030230 | 638 | Rph "Rabphilin" [Drosophila me | 0.480 | 0.567 | 0.395 | 4.3e-97 | |
| UNIPROTKB|A6QR65 | 704 | RPH3A "Rabphilin 3A homolog (M | 0.384 | 0.411 | 0.413 | 1.3e-96 | |
| UNIPROTKB|Q06846 | 704 | RPH3A "Rabphilin-3A" [Bos taur | 0.384 | 0.411 | 0.413 | 1.3e-96 | |
| UNIPROTKB|Q9Y2J0 | 694 | RPH3A "Rabphilin-3A" [Homo sap | 0.384 | 0.417 | 0.410 | 9.9e-95 | |
| UNIPROTKB|E1BY01 | 669 | RPH3A "Uncharacterized protein | 0.385 | 0.434 | 0.408 | 9.9e-95 | |
| UNIPROTKB|E2QRX9 | 702 | RPH3A "Uncharacterized protein | 0.384 | 0.413 | 0.407 | 1.3e-94 | |
| RGD|620073 | 684 | Rph3a "rabphilin 3A" [Rattus n | 0.384 | 0.423 | 0.413 | 2.1e-94 | |
| UNIPROTKB|P47709 | 684 | Rph3a "Rabphilin-3A" [Rattus n | 0.384 | 0.423 | 0.413 | 2.1e-94 | |
| MGI|MGI:102788 | 681 | Rph3a "rabphilin 3A" [Mus musc | 0.384 | 0.425 | 0.410 | 4.3e-94 | |
| UNIPROTKB|E1BVF7 | 704 | E1BVF7 "Uncharacterized protei | 0.180 | 0.193 | 0.518 | 1.3e-91 |
| FB|FBgn0030230 Rph "Rabphilin" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 4.3e-97, Sum P(3) = 4.3e-97
Identities = 153/387 (39%), Positives = 219/387 (56%)
Query: 372 IRKIASGGSVKLEPQSF------PRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENS 425
IR GG KL F RP+ + + S S R S + R ++ + S
Sbjct: 261 IRSFIDGGERKLSNSFFFNRQQSQRPSECPEYDSVSMSKLRRESSFLRRGSVS---SSWS 317
Query: 426 ISPVSPLSPICNGNFNTQQESSGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTC 485
IS S +GN TQ + + ++ D LG +E+ ++Y
Sbjct: 318 ISDSSGSGSNNSGNSQTQSQYQ---------QHQQQLQQHCRDPLLGWLEIAISYREAFH 368
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PL--TKTSHRLRTKTCLRTINPEFHEKLT 542
SL T+ RA+ L AMD G +DP+CKLN++ P TK + RTKT +T NPEF+E L
Sbjct: 369 SLDCTMVRARDLPAMDAAGLADPYCKLNIITPEAHTKYTRWQRTKTVHKTRNPEFNETLQ 428
Query: 543 FYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRX 602
F V +L +++ + DDDKYGHDFLG A+ L+ + + + L +
Sbjct: 429 FVGVEPEELGNSLIYVALFDDDKYGHDFLGAAKVCLSTVHSTSQYRISVPLGVE---DQY 485
Query: 603 XXXXXXXXCWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH 662
W +GK+ L+LC++TK+RAL+VN+ +C NL+ MD+NG SDPF+K+ LKPD H
Sbjct: 486 SNAAEMAQNWPNGKMLLSLCYNTKRRALVVNVKQCINLMAMDNNGSSDPFVKIQLKPDAH 545
Query: 663 K-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCN 721
K +K+KT VKW+TLNPI+NEEF E +L+K+ L++TVWDKD GKSND+LG L+L
Sbjct: 546 KNKKHKTSVKWRTLNPIYNEEFYFEASPHDLNKEMLILTVWDKDLGKSNDFLGSLQLGAQ 605
Query: 722 SKGDRLRHWVDMMKYPDHKHEGIHNLS 748
SKG+RL+ W+D ++ PDH HE H L+
Sbjct: 606 SKGERLQQWLDCIRLPDHFHEKWHCLA 632
|
|
| UNIPROTKB|A6QR65 RPH3A "Rabphilin 3A homolog (Mouse)" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 127/307 (41%), Positives = 198/307 (64%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
EE + + +A T LG++E ++ YD SLH T+ +AKGL+ MD +G +DP+ KL+L+P
Sbjct: 390 EEANSYDSDEA-TTLGALEFSLLYDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLP 448
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ +++ D+ ++L I V D+DK+GH +F+GE R
Sbjct: 449 GASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETR 508
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 621
F L +L+P+ ++ + L + P+ R + GKI ++L
Sbjct: 509 FSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 568
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 680
+ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct: 569 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 628
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
EEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K
Sbjct: 629 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 688
Query: 741 HEGIHNL 747
E H L
Sbjct: 689 IERWHQL 695
|
|
| UNIPROTKB|Q06846 RPH3A "Rabphilin-3A" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 621 (223.7 bits), Expect = 1.3e-96, Sum P(2) = 1.3e-96
Identities = 127/307 (41%), Positives = 198/307 (64%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
EE + + +A T LG++E ++ YD SLH T+ +AKGL+ MD +G +DP+ KL+L+P
Sbjct: 390 EEANSYDSDEA-TTLGALEFSLLYDQDNSSLHCTIIKAKGLKPMDSNGLADPYVKLHLLP 448
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ +++ D+ ++L I V D+DK+GH +F+GE R
Sbjct: 449 GASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETR 508
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 621
F L +L+P+ ++ + L + P+ R + GKI ++L
Sbjct: 509 FSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 568
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 680
+ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct: 569 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 628
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
EEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K
Sbjct: 629 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 688
Query: 741 HEGIHNL 747
E H L
Sbjct: 689 IERWHQL 695
|
|
| UNIPROTKB|Q9Y2J0 RPH3A "Rabphilin-3A" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
Identities = 126/307 (41%), Positives = 197/307 (64%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
EE + + +A T LG++E ++ YD SL T+ +AKGL+ MD +G +DP+ KL+L+P
Sbjct: 380 EEANSYDSDEA-TTLGALEFSLLYDQDNSSLQCTIIKAKGLKPMDSNGLADPYVKLHLLP 438
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ +++ D+ ++L I V D+DK+GH +F+GE R
Sbjct: 439 GASKSNKLRTKTLRNTRNPIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETR 498
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 621
F L +L+P+ ++ + L + P+ R + GKI ++L
Sbjct: 499 FSLKKLKPNQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERVGDIEERGKILVSL 558
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 680
+ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct: 559 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 618
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
EEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K
Sbjct: 619 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 678
Query: 741 HEGIHNL 747
E H L
Sbjct: 679 IERWHQL 685
|
|
| UNIPROTKB|E1BY01 RPH3A "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 610 (219.8 bits), Expect = 9.9e-95, Sum P(2) = 9.9e-95
Identities = 125/306 (40%), Positives = 193/306 (63%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
EE S T LG++E ++ YD +LH TL RAKGL+ MD +G +DP+ KL+L+P
Sbjct: 355 EEDANSYDSDEGTTLGALEFSLLYDQENSALHCTLIRAKGLKPMDSNGLADPYVKLHLLP 414
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ +++ D++ ++L I V D+DK+GH +F+GE R
Sbjct: 415 GASKSNKLRTKTLRNTRNPVWNETLVYHGITDEDMTRKTLRISVCDEDKFGHNEFIGETR 474
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW-------------QHGKIFLTLC 622
L +L+ + ++ + L + P+ R + GKI ++L
Sbjct: 475 VSLKKLKANQKKNFNICLERVIPMKRAGTTGSSRGMALYEEEVDRGGDVEERGKILVSLM 534
Query: 623 FSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNE 681
+ST++ LIV +++C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FNE
Sbjct: 535 YSTQQGGLIVGIVRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNE 594
Query: 682 EFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741
EF + K ++L+K++L I+VWD D GKSNDY+G +L +KG+RL+HW + +K D K
Sbjct: 595 EFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGITAKGERLKHWYECLKNKDKKI 654
Query: 742 EGIHNL 747
E H L
Sbjct: 655 ERWHTL 660
|
|
| UNIPROTKB|E2QRX9 RPH3A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 613 (220.8 bits), Expect = 1.3e-94, Sum P(2) = 1.3e-94
Identities = 125/307 (40%), Positives = 198/307 (64%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
+E + + +A T LG++E ++ YD SL+ T+ +AKGL+ MD +G +DP+ KL+L+P
Sbjct: 388 DEANSYDSDEA-TTLGALEFSLLYDQDNSSLNCTIIKAKGLKPMDSNGLADPYVKLHLLP 446
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ +++ D+ ++L I V D+DK+GH +F+GE R
Sbjct: 447 GASKSNKLRTKTLRNTRNPVWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETR 506
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 621
F L +L+P+ ++ + L + P+ R + GKI ++L
Sbjct: 507 FSLKKLKPNQKKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 566
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 680
+ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct: 567 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 626
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
EEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K
Sbjct: 627 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 686
Query: 741 HEGIHNL 747
E H L
Sbjct: 687 IERWHQL 693
|
|
| RGD|620073 Rph3a "rabphilin 3A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 127/307 (41%), Positives = 196/307 (63%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
EE + + QA T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P
Sbjct: 370 EEANSYDSDQA-TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 428
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH +F+GE R
Sbjct: 429 GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 488
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 621
F L +L+ + ++ + L + P+ R + GKI ++L
Sbjct: 489 FSLKKLKANQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 548
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 680
+ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct: 549 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 608
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
EEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K
Sbjct: 609 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 668
Query: 741 HEGIHNL 747
E H L
Sbjct: 669 IERWHQL 675
|
|
| UNIPROTKB|P47709 Rph3a "Rabphilin-3A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 611 (220.1 bits), Expect = 2.1e-94, Sum P(2) = 2.1e-94
Identities = 127/307 (41%), Positives = 196/307 (63%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
EE + + QA T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P
Sbjct: 370 EEANSYDSDQA-TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 428
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH +F+GE R
Sbjct: 429 GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 488
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 621
F L +L+ + ++ + L + P+ R + GKI ++L
Sbjct: 489 FSLKKLKANQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 548
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 680
+ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct: 549 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 608
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
EEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K
Sbjct: 609 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 668
Query: 741 HEGIHNL 747
E H L
Sbjct: 669 IERWHQL 675
|
|
| MGI|MGI:102788 Rph3a "rabphilin 3A" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 608 (219.1 bits), Expect = 4.3e-94, Sum P(2) = 4.3e-94
Identities = 126/307 (41%), Positives = 196/307 (63%)
Query: 457 EEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP 516
EE + + +A T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P
Sbjct: 367 EEANSYDSDEA-TTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP 425
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEAR 575
S++LRTKT T NP ++E L ++ ++E D+ ++L I V D+DK+GH +F+GE R
Sbjct: 426 GASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETR 485
Query: 576 FPLNRLRPHISRDLCLNLCKHYPVPRXXXXXXXXXCW--------------QHGKIFLTL 621
F L +L+ + ++ + L + P+ R + GKI ++L
Sbjct: 486 FSLKKLKANQRKNFNICLERVIPMKRAGTTGSARGMALYEEEQVERIGDIEERGKILVSL 545
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFN 680
+ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD+ K+ K+KT +K KTLNP FN
Sbjct: 546 MYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFN 605
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
EEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW + +K D K
Sbjct: 606 EEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKK 665
Query: 741 HEGIHNL 747
E H L
Sbjct: 666 IERWHQL 672
|
|
| UNIPROTKB|E1BVF7 E1BVF7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 1.3e-91, Sum P(5) = 1.3e-91
Identities = 71/137 (51%), Positives = 101/137 (73%)
Query: 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 671
+ G+I ++L +S++K+ L+V +I+C +L MD+NG+SDP++K YLKPD K+ K+KT VK
Sbjct: 558 ERGRILISLKYSSQKQGLLVGIIRCAHLAAMDANGYSDPYVKTYLKPDEDKKSKHKTAVK 617
Query: 672 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 731
KTLNP FNEEF E K +L+K+TL +TVWD D GKSND++G + L N+KG+RL+HW
Sbjct: 618 KKTLNPEFNEEFCYEIKHGDLAKKTLEVTVWDYDIGKSNDFIGGVVLGINAKGERLKHWF 677
Query: 732 DMMKYPDHKHEGIHNLS 748
D +K D K E H L+
Sbjct: 678 DCLKNKDKKIERWHTLT 694
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 754 | |||
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 1e-61 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 7e-49 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 3e-26 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 1e-25 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 1e-25 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 4e-24 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 7e-24 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 9e-24 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-22 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 4e-22 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 3e-21 | |
| pfam00168 | 85 | pfam00168, C2, C2 domain | 5e-21 | |
| cd00030 | 102 | cd00030, C2, C2 domain | 5e-20 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 9e-20 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 1e-19 | |
| smart00239 | 101 | smart00239, C2, Protein kinase C conserved region | 2e-19 | |
| cd04035 | 123 | cd04035, C2A_Rabphilin_Doc2, C2 domain first repea | 3e-19 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 3e-19 | |
| pfam02318 | 92 | pfam02318, RPH3A_effect_N, Rabphilin-3A effector d | 5e-19 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 5e-19 | |
| cd08384 | 133 | cd08384, C2B_Rabphilin_Doc2, C2 domain second repe | 6e-19 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 7e-19 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 1e-17 | |
| cd08385 | 124 | cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain | 4e-17 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 7e-17 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 8e-17 | |
| cd04026 | 131 | cd04026, C2_PKC_alpha_gamma, C2 domain in Protein | 1e-15 | |
| cd08386 | 125 | cd08386, C2A_Synaptotagmin-7, C2A domain first rep | 1e-15 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 1e-15 | |
| cd04030 | 127 | cd04030, C2C_KIAA1228, C2 domain third repeat pres | 2e-15 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 2e-15 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 2e-15 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 2e-15 | |
| cd04031 | 125 | cd04031, C2A_RIM1alpha, C2 domain first repeat con | 3e-15 | |
| cd08521 | 123 | cd08521, C2A_SLP, C2 domain first repeat present i | 6e-15 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 4e-14 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 8e-14 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 2e-13 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 4e-13 | |
| cd04009 | 133 | cd04009, C2B_Munc13-like, C2 domain second repeat | 6e-13 | |
| cd04020 | 162 | cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat | 6e-13 | |
| cd00276 | 134 | cd00276, C2B_Synaptotagmin, C2 domain second repea | 1e-12 | |
| cd08388 | 128 | cd08388, C2A_Synaptotagmin-4-11, C2A domain first | 1e-12 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 2e-12 | |
| cd08387 | 124 | cd08387, C2A_Synaptotagmin-8, C2A domain first rep | 4e-12 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 7e-12 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 1e-11 | |
| cd08405 | 136 | cd08405, C2B_Synaptotagmin-7, C2 domain second rep | 2e-11 | |
| cd08403 | 134 | cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s | 3e-11 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 4e-11 | |
| cd08402 | 136 | cd08402, C2B_Synaptotagmin-1, C2 domain second rep | 1e-10 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 1e-10 | |
| cd04029 | 125 | cd04029, C2A_SLP-4_5, C2 domain first repeat prese | 3e-10 | |
| cd08381 | 122 | cd08381, C2B_PI3K_class_II, C2 domain second repea | 4e-10 | |
| cd08390 | 123 | cd08390, C2A_Synaptotagmin-15-17, C2A domain first | 5e-10 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 6e-10 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 1e-09 | |
| cd08408 | 138 | cd08408, C2B_Synaptotagmin-14_16, C2 domain second | 1e-09 | |
| cd04040 | 115 | cd04040, C2D_Tricalbin-like, C2 domain fourth repe | 3e-09 | |
| cd08676 | 153 | cd08676, C2A_Munc13-like, C2 domain first repeat i | 3e-09 | |
| cd08393 | 125 | cd08393, C2A_SLP-1_2, C2 domain first repeat prese | 5e-09 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 7e-09 | |
| cd08404 | 136 | cd08404, C2B_Synaptotagmin-4, C2 domain second rep | 1e-08 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 8e-08 | |
| cd08410 | 135 | cd08410, C2B_Synaptotagmin-17, C2 domain second re | 9e-08 | |
| cd08376 | 116 | cd08376, C2B_MCTP_PRT, C2 domain second repeat fou | 1e-07 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 1e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-07 | |
| cd08675 | 137 | cd08675, C2B_RasGAP, C2 domain second repeat of Ra | 1e-07 | |
| cd04017 | 135 | cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe | 2e-07 | |
| cd04036 | 119 | cd04036, C2_cPLA2, C2 domain present in cytosolic | 2e-07 | |
| cd08377 | 119 | cd08377, C2C_MCTP_PRT, C2 domain third repeat foun | 3e-07 | |
| cd08688 | 110 | cd08688, C2_KIAA0528-like, C2 domain found in the | 3e-07 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 3e-07 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 4e-07 | |
| cd04042 | 121 | cd04042, C2A_MCTP_PRT, C2 domain first repeat foun | 5e-07 | |
| cd04043 | 126 | cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma | 8e-07 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 1e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-06 | |
| cd00275 | 128 | cd00275, C2_PLC_like, C2 domain present in Phospho | 2e-06 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-06 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 2e-06 | |
| cd08392 | 128 | cd08392, C2A_SLP-3, C2 domain first repeat present | 2e-06 | |
| cd04048 | 120 | cd04048, C2A_Copine, C2 domain first repeat in Cop | 3e-06 | |
| cd04054 | 121 | cd04054, C2A_Rasal1_RasA4, C2 domain first repeat | 3e-06 | |
| cd08409 | 137 | cd08409, C2B_Synaptotagmin-15, C2 domain second re | 5e-06 | |
| cd04044 | 124 | cd04044, C2A_Tricalbin-like, C2 domain first repea | 7e-06 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 8e-06 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 8e-06 | |
| cd08680 | 124 | cd08680, C2_Kibra, C2 domain found in Human protei | 8e-06 | |
| cd04024 | 128 | cd04024, C2A_Synaptotagmin-like, C2 domain first r | 1e-05 | |
| cd04041 | 111 | cd04041, C2A_fungal, C2 domain first repeat; funga | 1e-05 | |
| cd04022 | 127 | cd04022, C2A_MCTP_PRT_plant, C2 domain first repea | 2e-05 | |
| cd08391 | 121 | cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir | 3e-05 | |
| cd04037 | 124 | cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer | 3e-05 | |
| cd04038 | 145 | cd04038, C2_ArfGAP, C2 domain present in Arf GTPas | 3e-05 | |
| cd04046 | 126 | cd04046, C2_Calpain, C2 domain present in Calpain | 6e-05 | |
| cd08375 | 136 | cd08375, C2_Intersectin, C2 domain present in Inte | 7e-05 | |
| cd04039 | 108 | cd04039, C2_PSD, C2 domain present in Phosphatidyl | 7e-05 | |
| cd08389 | 124 | cd08389, C2A_Synaptotagmin-14_16, C2A domain first | 9e-05 | |
| cd08374 | 133 | cd08374, C2F_Ferlin, C2 domain sixth repeat in Fer | 1e-04 | |
| cd08392 | 128 | cd08392, C2A_SLP-3, C2 domain first repeat present | 2e-04 | |
| cd04047 | 110 | cd04047, C2B_Copine, C2 domain second repeat in Co | 2e-04 | |
| cd04027 | 127 | cd04027, C2B_Munc13, C2 domain second repeat in Mu | 3e-04 | |
| cd04033 | 133 | cd04033, C2_NEDD4_NEDD4L, C2 domain present in the | 4e-04 | |
| cd04025 | 123 | cd04025, C2B_RasA1_RasA4, C2 domain second repeat | 4e-04 | |
| cd08407 | 138 | cd08407, C2B_Synaptotagmin-13, C2 domain second re | 7e-04 | |
| cd04050 | 105 | cd04050, C2B_Synaptotagmin-like, C2 domain second | 0.001 | |
| COG5038 | 1227 | COG5038, COG5038, Ca2+-dependent lipid-binding pro | 0.002 | |
| cd04049 | 124 | cd04049, C2_putative_Elicitor-responsive_gene, C2 | 0.002 | |
| cd08406 | 136 | cd08406, C2B_Synaptotagmin-12, C2 domain second re | 0.003 | |
| cd08685 | 119 | cd08685, C2_RGS-like, C2 domain of the Regulator O | 0.003 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 1e-61
Identities = 80/133 (60%), Positives = 104/133 (78%), Gaps = 1/133 (0%)
Query: 616 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKT 674
KI ++L ++T++R LIV +I+C NL MD+NG+SDPF+KLYLKPD K+ K+KT VK KT
Sbjct: 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKT 60
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 734
LNP FNEEF + K ++L+K+TL ITVWDKD GKSNDY+G L+L N+KG+RLRHW+D +
Sbjct: 61 LNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCL 120
Query: 735 KYPDHKHEGIHNL 747
K PD K E H L
Sbjct: 121 KNPDKKIEAWHTL 133
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 167 bits (425), Expect = 7e-49
Identities = 59/118 (50%), Positives = 88/118 (74%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
LG++E T+ YD +LH T+ RAKGL+AMD +G SDP+ KLNL+P + +LRTKT
Sbjct: 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVH 60
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRD 588
+T NPEF+E LT+Y ++E D+ ++L +LVLD+D++G+DFLGE R PL +L+P+ ++
Sbjct: 61 KTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQ 118
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 47/122 (38%), Positives = 71/122 (58%), Gaps = 5/122 (4%)
Query: 621 LCFSTKKR----ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL 675
+CFS + L V +++ NL MD G SDP++K++L + + +K KT +K +TL
Sbjct: 4 ICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTL 63
Query: 676 NPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK 735
NP +NE F+ E ++ K L++TV D D ND +G + L CN+ G LRHW DM+
Sbjct: 64 NPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLA 123
Query: 736 YP 737
P
Sbjct: 124 SP 125
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 53/127 (41%), Positives = 76/127 (59%), Gaps = 7/127 (5%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----RKYKTGV 670
G++ L+LC++ + VN+IK NL MD NG SDP++K++L ++K K KT +
Sbjct: 2 GELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWL---MYKDKRVEKKKTVI 58
Query: 671 KWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 730
K +TLNP+FNE F + L + TL+ITV DKD ND +G + L S G L+HW
Sbjct: 59 KKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHW 118
Query: 731 VDMMKYP 737
DM+ P
Sbjct: 119 KDMLSKP 125
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 49/124 (39%), Positives = 72/124 (58%), Gaps = 1/124 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G++ L+L + L V ++K NL P D G SDP++K+ L K +K KT VK
Sbjct: 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG 60
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
TLNP+FNE F+ + +L + +LVITV DKD N+ +G + L +S G+ L HW +M
Sbjct: 61 TLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEM 120
Query: 734 MKYP 737
+ P
Sbjct: 121 LASP 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 4e-24
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V +I+ NL D NG SDP++K+ L K+K+KT V TLNP++NE F +
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFP--V 55
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLEL 718
+ TL + VWDKD +D+LG +E+
Sbjct: 56 LDPESDTLTVEVWDKDRFSKDDFLGEVEI 84
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 7e-24
Identities = 34/88 (38%), Positives = 46/88 (52%), Gaps = 3/88 (3%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V +I NL P D NG SDP++K+ L K KT V TLNP++NE F E +
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQ-KKDTKKTKVVKNTLNPVWNETFTFE--V 57
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLE 717
T L I V+D D +D++G +
Sbjct: 58 TLPELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 96.9 bits (242), Expect = 9e-24
Identities = 45/103 (43%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL-HKRKYKTGVKWK 673
G+I+L S K L V + + NLIPMD NG SDP++KL L PD ++ K KT K
Sbjct: 2 GRIYLK--ISVKDNKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK 59
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCL 716
TLNP++NE F + K + ++ L I VWD D ND++G L
Sbjct: 60 TLNPVWNETFTFDLKPADKDRR-LSIEVWDWDRTTRNDFMGSL 101
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 92.2 bits (229), Expect = 2e-22
Identities = 38/103 (36%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V +I NL P D G SDP++K+ L D K K KT V TLNP++NE F E +
Sbjct: 2 LTVKIISARNLPPKDKGGKSDPYVKVSLDGD-PKEKKKTKVVKNTLNPVWNETFEFE--V 58
Query: 690 TELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHW 730
L I V+DKD +D++G + L G R
Sbjct: 59 PPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 4e-22
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
GK+ +L + + L V +I+ +L MD G SDP++K+YL PD K+K++T V KT
Sbjct: 3 GKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-KKKKFETKVHRKT 61
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKD 705
LNP+FNE F + +EL +TLV +V+D D
Sbjct: 62 LNPVFNETFTFKVPYSELGNKTLVFSVYDFD 92
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 3e-21
Identities = 38/106 (35%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD---LHKRKYKTGVK 671
G + + + +++L V ++ NL+P+DSNG SDPF+K+ L P KT VK
Sbjct: 3 GVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVK 62
Query: 672 WKTLNPIFNE--EFAIETKITELSKQTLVITVWDKDYGKSNDYLGC 715
KTL P+F+E EF + + + L+ TV D D SND+ G
Sbjct: 63 KKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLGSNDFEGE 108
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|215765 pfam00168, C2, C2 domain | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-21
Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 6/90 (6%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L VT+ AK L D++G SDP+ K++L + +TK T+NP ++E TF
Sbjct: 1 LRVTVISAKNLPPKDLNGKSDPYVKVSLGG--QKKDTKKTKVVKNTLNPVWNETFTFEVT 58
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEAR 575
L L I V D D++G DF+GE
Sbjct: 59 LP---ELAELRIEVYDYDRFGKDDFIGEVT 85
|
Length = 85 |
| >gnl|CDD|175973 cd00030, C2, C2 domain | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 5e-20
Identities = 36/109 (33%), Positives = 54/109 (49%), Gaps = 9/109 (8%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L VT+ A+ L A D++G SDP+ K++L + +TK T+NP ++E F
Sbjct: 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEF--- 53
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR-PHISRDLCLNL 593
D +L + V D D++ DFLGE PL+ L +L L L
Sbjct: 54 PVLDPESDTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 9e-20
Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 1/124 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G++ +LC+ L + +IK NL MD GFSDP++K+ L + + +K KT VK
Sbjct: 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
TLNP +NE + + +L+I V D D N+ +G + N+ G HW +M
Sbjct: 61 TLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEM 120
Query: 734 MKYP 737
+ P
Sbjct: 121 LANP 124
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 1e-19
Identities = 42/127 (33%), Positives = 65/127 (51%), Gaps = 4/127 (3%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKT 528
LG++ ++ Y+S +L V + + L AMD GTSDP+ KL L+P + H+++T+
Sbjct: 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRV 58
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISR 587
+T NP + E TFY + L SLH VL D+Y D +GE PL
Sbjct: 59 LRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEG 118
Query: 588 DLCLNLC 594
+L ++
Sbjct: 119 ELLVSRE 125
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 2e-19
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 6/106 (5%)
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 545
+L V + A+ L D G SDP+ K++L K +TK T+NP ++E F
Sbjct: 1 TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKK--KTKVVKNTLNPVWNETFEFE- 57
Query: 546 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 590
L L I V D D++G DF+G+ PL+ L +
Sbjct: 58 --VPPPELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101 |
| >gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-19
Identities = 41/104 (39%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G + TL + AL +I+ L MD+NG SDP++KL L P K K +T K
Sbjct: 2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHK 61
Query: 674 TLNPIFNEEFAIETKITE--LSKQTLVITVWDKD-YGKSNDYLG 714
T NP FNE ITE + ++TL + V D+D +G ND+LG
Sbjct: 62 TRNPEFNETLTYY-GITEEDIQRKTLRLLVLDEDRFG--NDFLG 102
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 3e-19
Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 3/111 (2%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
NLG I+ +V+YD +L + + +A L A D GTSDPF K+ L+P K H+L TK
Sbjct: 1 NLGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVK 58
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 579
+ +NP ++E F L + L++ VLD D++ +D +GE PLN
Sbjct: 59 RKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLN 109
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|145459 pfam02318, RPH3A_effect_N, Rabphilin-3A effector domain N-terminal | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 5e-19
Identities = 33/64 (51%), Positives = 46/64 (71%)
Query: 67 RLQTGWSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKR 126
+LQ GWSV GQ + +K E L EQE I VI RAE ++ +EQ+R+GRLV+R++NM++
Sbjct: 25 KLQAGWSVHTGQQEKQRKTESLTDAEQEIINRVIARAEKMESMEQQRIGRLVDRLENMRK 84
Query: 127 NVTG 130
NV G
Sbjct: 85 NVMG 88
|
This is a the N-terminus of a family of proteins involved in protein transport in synaptic vesicles. Rabphilin-3A has been shown to contact Rab3A, a small G protein important in neurotransmitter release, in two distinct areas. Most member proteins carry an FVHE-PHD type zinc-finger domain at the C-terminus. Length = 92 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 83.0 bits (206), Expect = 5e-19
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V++I NL D NG SDPF+K YL ++ +KT KTLNP++NE F + +
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYLN---GEKVFKTKTIKKTLNPVWNESFEVP--V 55
Query: 690 TELSKQTLVITVWDKDYGKSNDYLG 714
+ L + V+D D G +D LG
Sbjct: 56 PSRVRAVLKVEVYDWDRGGKDDLLG 80
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 6e-19
Identities = 36/100 (36%), Positives = 57/100 (57%), Gaps = 2/100 (2%)
Query: 474 IELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 533
I +++ Y++ L V + R L AMD +G SDPF KL L P + +T+ +T+
Sbjct: 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTL 61
Query: 534 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLG 572
NPEF+E+ FY + +DL+ ++L I V D D D++G
Sbjct: 62 NPEFNEEF-FYDIKHSDLAKKTLEITVWDKDIGKSNDYIG 100
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 7e-19
Identities = 38/88 (43%), Positives = 57/88 (64%), Gaps = 1/88 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 673
G+I LT+ +S++++ LIV + KC NL P DS+ DP+++LYL PD K + KT VK
Sbjct: 3 GRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD 62
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITV 701
LNP+F+E F + EL ++TL + V
Sbjct: 63 NLNPVFDETFEFPVSLEELKRRTLDVAV 90
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-17
Identities = 44/118 (37%), Positives = 62/118 (52%), Gaps = 9/118 (7%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKR-KYKTGVKW 672
G + L + K R L V++I+C +L D SDP++K YL PD R K KT VK
Sbjct: 2 GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK 61
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 730
KTLNP+FNE + + EL + L ++VW +D N +LG +E+ L W
Sbjct: 62 KTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEV-------DLGSW 112
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-17
Identities = 42/111 (37%), Positives = 64/111 (57%), Gaps = 4/111 (3%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
LG ++ ++ YD + L V + +A L AMD+ GTSDP+ K+ L+P K + TK
Sbjct: 1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVH 58
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 579
+T+NP F+E TF V ++L ++L V D D++ HD +GE R PL
Sbjct: 59 RKTLNPVFNETFTF-KVPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLL 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 7e-17
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 7/138 (5%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR----KYKTGV 670
G++ L+LC+ L V ++K +L MD +G +DP++K+ L + + K KT V
Sbjct: 2 GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNL---YYGKKRISKKKTHV 58
Query: 671 KWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 730
K TLNP+FNE F + EL ++ V D D N+ +G L L + G HW
Sbjct: 59 KKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHW 118
Query: 731 VDMMKYPDHKHEGIHNLS 748
++ P + H L
Sbjct: 119 KEVCNPPRRQIAEWHMLC 136
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 8e-17
Identities = 39/106 (36%), Positives = 61/106 (57%), Gaps = 2/106 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKR-KYKTGVKW 672
G+I +L ++ K +L V++ +C NL D S+P++K+YL PD K+ K KT VK
Sbjct: 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
T NP+FNE ++L +TL ++VW D N +LG +E+
Sbjct: 61 NTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEI 106
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-15
Identities = 39/111 (35%), Positives = 58/111 (52%), Gaps = 5/111 (4%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G I L ++ L V + AK L MD +G SDP+ KL L+P K + +TKT +
Sbjct: 2 GRIYLKISVKDN--KLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKK 59
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
T+NP ++E TF + D + L I V D D+ +DF+G F ++ L
Sbjct: 60 TLNPVWNETFTFD-LKPADKD-RRLSIEVWDWDRTTRNDFMGSLSFGVSEL 108
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131 |
| >gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
G+I ++ + ++ L + ++K L D +G SDPF+K+YL PD K K +T VK K
Sbjct: 3 GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 61
Query: 675 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
LNP +NE F E +L ++ L + V D D ND +G + L
Sbjct: 62 LNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSL 106
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 1e-15
Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 4/109 (3%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G + ++ YD L+V L +A+ L+ D GT+DP+CK+ L+P + ++K
Sbjct: 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNT--KQSKIHK 59
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPL 578
+T+NPEF E F V +L ++L +L+ D D++ + +G PL
Sbjct: 60 KTLNPEFDESFVF-EVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPL 107
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 1/90 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
LG I+LT+ Y S L VT+H+ + L D DP+ +L L+P S R +T
Sbjct: 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKK 61
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILV 560
+NP F E F VS +L ++L + V
Sbjct: 62 DNLNPVFDETFEF-PVSLEELKRRTLDVAV 90
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-15
Identities = 40/106 (37%), Positives = 60/106 (56%), Gaps = 8/106 (7%)
Query: 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL---HKRKYKTGV 670
G+I + L + LIV +++ +L P D +P++K+YL PD KR+ KT V
Sbjct: 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKT-V 60
Query: 671 KWKTLNPIFNEEFAIETKIT--ELSKQTLVITVWDKDYGKSNDYLG 714
K KTLNP +N+ F + + L ++TL +TVWD D ND+LG
Sbjct: 61 K-KTLNPEWNQTF-EYSNVRRETLKERTLEVTVWDYDRDGENDFLG 104
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 2e-15
Identities = 39/98 (39%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + RA GL A DI G SDPFC L LV + RL+T T +T+NPE+++ TF
Sbjct: 3 LQVKVIRASGLAAADIGGKSDPFCVLELV-----NARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 547 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583
D+ L + V D+DK +FLG+ PL ++
Sbjct: 58 DIHDV----LEVTVYDEDKDKKPEFLGKVAIPLLSIKN 91
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-15
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 8/86 (9%)
Query: 631 IVN--LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 688
+V L++ NL PMD NG SDP++K L KYK+ V KTLNP + E+F +
Sbjct: 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG----NEKYKSKVCSKTLNPQWLEQF--DLH 54
Query: 689 ITELSKQTLVITVWDKDYGKSNDYLG 714
+ + Q L I VWDKD GK ++++G
Sbjct: 55 LFDDQSQILEIEVWDKDTGKKDEFIG 80
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 3e-15
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 1/103 (0%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G I++ + YD T L VT+ +A+ L D +P+ K+ L+P + RTKT +
Sbjct: 3 GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK 62
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGE 573
T+NPE+++ + +V L ++L + V D D+ G +DFLGE
Sbjct: 63 TLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRDGENDFLGE 105
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125 |
| >gnl|CDD|176056 cd08521, C2A_SLP, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 71.5 bits (176), Expect = 6e-15
Identities = 36/124 (29%), Positives = 59/124 (47%), Gaps = 3/124 (2%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G IE +++Y+ T SL V + + L D S+P+ K+ L+P + +T
Sbjct: 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKK 60
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDL 589
T NP F+E L Y +S++ L ++L + V D++G FLGE PL+ +
Sbjct: 61 NTTNPVFNETLK-YHISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSE 119
Query: 590 CLNL 593
L
Sbjct: 120 WYPL 123
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 41/117 (35%), Positives = 59/117 (50%), Gaps = 15/117 (12%)
Query: 637 CTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE-TKITELSK 694
NL + S G SD F+K YL PD K+ K KT V K++NP++N F + +LS+
Sbjct: 36 AKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQ 95
Query: 695 QTLVITVWDKDYGKSNDYLGCLELCC-------------NSKGDRLRHWVDMMKYPD 738
L +TVWD D SND+LG + L +S G+ + W M+ P+
Sbjct: 96 ACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPN 152
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 8e-14
Identities = 35/91 (38%), Positives = 49/91 (53%), Gaps = 6/91 (6%)
Query: 620 TLCFSTKKRA----LIVNLIKCTNLIP-MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
L FS + L V+LIK NL P DPF+K+ L PD +R ++ VK KT
Sbjct: 2 RLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPD-ERRSLQSKVKRKT 60
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKD 705
NP F+E F + EL ++TL ++V+D D
Sbjct: 61 QNPNFDETFVFQVSFKELQRRTLRLSVYDVD 91
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-13
Identities = 40/122 (32%), Positives = 61/122 (50%), Gaps = 10/122 (8%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G++ L++ S K L V ++ NL +D + DP++K YL PD K K KT V K
Sbjct: 2 GQVKLSI--SYKNGTLFVMVMHAKNLPLLDGSD-PDPYVKTYLLPDPQKTTKRKTKVVRK 58
Query: 674 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHW 730
T NP FNE + + +L ++ L ++VW D N++LG C+ L K D +
Sbjct: 59 TRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPL---KKLDLSQET 115
Query: 731 VD 732
Sbjct: 116 EK 117
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-13
Identities = 38/121 (31%), Positives = 56/121 (46%), Gaps = 1/121 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G+I L+L + L V ++K NL+ + +DPF+K+YL D K K KT VK
Sbjct: 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD 61
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
NPIFNE L +L +TV + +G + + + G L HW M
Sbjct: 62 DTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQM 121
Query: 734 M 734
+
Sbjct: 122 L 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 6e-13
Identities = 40/113 (35%), Positives = 58/113 (51%), Gaps = 8/113 (7%)
Query: 476 LTVT--YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLR 531
LTV Y ++ SL V + A+ L +D +G+SDPF K+ L+P L +T+ +
Sbjct: 5 LTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK 64
Query: 532 TINPEFHEKLTFYSVSETDLSLQS--LHILVLDDDKYG-HDFLGEARFPLNRL 581
T+ P F E F +V S++ L V D D G +DF GEA PLN +
Sbjct: 65 TLFPLFDESFEF-NVPPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133 |
| >gnl|CDD|175987 cd04020, C2B_SLP_1-2-3-4, C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 6e-13
Identities = 34/96 (35%), Positives = 48/96 (50%), Gaps = 1/96 (1%)
Query: 482 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 541
+T LHV + AK L A+ GTSD F K L+P + +T +++NP ++
Sbjct: 24 PSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTF 83
Query: 542 TFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARF 576
+ VS DLS L + V D DK +DFLG R
Sbjct: 84 VYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRL 119
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 162 |
| >gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-12
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL---RTKT 528
G + L+++Y T L V + +A+ L D G SDP+ K++L+ + +L +T
Sbjct: 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLL---QGGKKLKKKKTSV 57
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 579
T+NP F+E +F V L SL I V+D D G ++ +G+ +
Sbjct: 58 KKGTLNPVFNEAFSF-DVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPD 108
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 1e-12
Identities = 31/71 (43%), Positives = 50/71 (70%), Gaps = 2/71 (2%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWK 673
G +F +L ++++K+AL+VN+I+C +L MD +G SDP++KL L P+ + K KT V K
Sbjct: 3 GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE-KEHKVKTRVLRK 61
Query: 674 TLNPIFNEEFA 684
T NP+++E F
Sbjct: 62 TRNPVYDETFT 72
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 2e-12
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 2/122 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYK-TGVKWK 673
G++ L+L + L V++I+ L+ D + SDPF+K+ L L K K T
Sbjct: 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVD 732
T++P +NE F+ + EL +LV TV+ + SND++G + + S G HW
Sbjct: 61 TIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRR 120
Query: 733 MM 734
M+
Sbjct: 121 ML 122
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 4e-12
Identities = 37/104 (35%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
G++ +L + L V LI+ NL P D +G +DP+ K+ L PD K ++ + KT
Sbjct: 3 GELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTK-QSKIHKKT 61
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
LNP F+E F E EL K+TL + ++D D ++ +G +EL
Sbjct: 62 LNPEFDESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVEL 105
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 7e-12
Identities = 37/110 (33%), Positives = 63/110 (57%), Gaps = 2/110 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 672
G+I +L + K ++L V++ +C NL D + S+P++K YL PD ++ K KT +K
Sbjct: 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722
T NP++NE ++L +TL ++VW D N +LG +E+ +S
Sbjct: 62 NTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDS 111
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 1e-11
Identities = 42/93 (45%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L + L NL D NG+SDPF+KL+L K YKT V KTLNP++NEEF IE +
Sbjct: 1042 LTIMLRSGENLPSSDENGYSDPFVKLFLN---EKSVYKTKVVKKTLNPVWNEEFTIE--V 1096
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722
K L I V D D G+ ND LG E+ +
Sbjct: 1097 LNRVKDVLTINVNDWDSGEKNDLLGTAEIDLSK 1129
|
Length = 1227 |
| >gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 2e-11
Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 2/105 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G + L++ Y+ T + V + +A+ L+AMDI+GTSDP+ K+ L+ K + +T
Sbjct: 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKK 60
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEA 574
RT+NP F+E F ++ L +L I V+D D+ +D +G+
Sbjct: 61 RTLNPVFNESFIF-NIPLERLRETTLIITVMDKDRLSRNDLIGKI 104
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 3e-11
Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 1/98 (1%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G + ++ Y T L +T+ +A+ L+AMDI G SDP+ K++L+ + + +T
Sbjct: 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKN 60
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD 569
T+NP ++E L F V ++ SL I V+D D+ GH+
Sbjct: 61 TLNPTYNEALVF-DVPPENVDNVSLIIAVVDYDRVGHN 97
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 4e-11
Identities = 35/118 (29%), Positives = 53/118 (44%), Gaps = 31/118 (26%)
Query: 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKL-------------YLKPDLHKRK------- 665
L V +I+ L+ D NGFSDP+ L K H++K
Sbjct: 26 PIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTV 85
Query: 666 -----YKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
T VK +TLNP++NE F E + ++S L + +WD D +D+LGC+ +
Sbjct: 86 PAKSIKVTEVKPQTLNPVWNETFRFE--VEDVSNDQLHLDIWDHD----DDFLGCVNI 137
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-10
Identities = 35/104 (33%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 60
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGE 573
RT+NP ++E +F V + L + VLD D+ G +D +G+
Sbjct: 61 RTLNPYYNESFSF-EVPFEQIQKVHLIVTVLDYDRIGKNDPIGK 103
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-10
Identities = 29/85 (34%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L ++L + NL D G SDP++K K YK+ +K LNP+++E+F +
Sbjct: 2 LDIHLKEGRNLAARDRGGTSDPYVKFKYG---GKTVYKSKTIYKNLNPVWDEKFTL---P 55
Query: 690 TELSKQTLVITVWDKDYGKSNDYLG 714
E Q L I V+D D G ++D++G
Sbjct: 56 IEDVTQPLYIKVFDYDRGLTDDFMG 80
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|175995 cd04029, C2A_SLP-4_5, C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 3e-10
Identities = 35/110 (31%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G I +++YD T SL+V + + L D S+P+ K L+P + +T
Sbjct: 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKR 61
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLN 579
T NP ++E L YS+S + L ++L + V D++G + FLGE PL+
Sbjct: 62 NTTNPVYNETLK-YSISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLD 110
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176027 cd08381, C2B_PI3K_class_II, C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 4e-10
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS-DPFCKLNLVPLTKTSHRLRTKTCL 530
G ++L+++Y + T L V + AK L +D G+ DP+ K L+P + + + +TK
Sbjct: 2 GQVKLSISYKNGT--LFVMVMHAKNLPLLD--GSDPDPYVKTYLLPDPQKTTKRKTKVVR 57
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDL 589
+T NP F+E L + + DL + L + V D ++FLG PL +L DL
Sbjct: 58 KTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKL------DL 111
Query: 590 CLNLCKHYP 598
K YP
Sbjct: 112 SQETEKWYP 120
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 122 |
| >gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 5e-10
Identities = 41/125 (32%), Positives = 61/125 (48%), Gaps = 11/125 (8%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGL--RAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G + +V YD L V+L +A+ L R D+ DPF K+ L+P + L++K
Sbjct: 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVA-HCDPFVKVCLLPDER--RSLQSKVK 57
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP----H 584
+T NP F E F VS +L ++L + V D D++ H +G FPL L
Sbjct: 58 RKTQNPNFDETFVF-QVSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGV 116
Query: 585 ISRDL 589
+ RDL
Sbjct: 117 VWRDL 121
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 6e-10
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 13/93 (13%)
Query: 632 VNLIKCTNLIPMDSN------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI 685
+++I+ +L+ D G SDP++ + + + +K+ V + LNP +NE +
Sbjct: 5 IHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA----QTFKSKVIKENLNPKWNEVY-- 58
Query: 686 ETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
E + E+ Q L I ++D+D K D+LG L +
Sbjct: 59 EAVVDEVPGQELEIELFDEDPDKD-DFLGRLSI 90
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 1e-09
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 635 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY---KTGVKWKTLNPIFNEEFAIETKITE 691
++ NL P D NG SDP YLK L K+K + TLNP+F + F +E +
Sbjct: 7 VRARNLQPKDPNGKSDP----YLKIKLGKKKINDRDNYIP-NTLNPVFGKMFELEATLPG 61
Query: 692 LSKQTLVITVWDKDYGKSNDYLG 714
S L I+V D D S+D +G
Sbjct: 62 NS--ILKISVMDYDLLGSDDLIG 82
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176053 cd08408, C2B_Synaptotagmin-14_16, C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-09
Identities = 34/126 (26%), Positives = 59/126 (46%), Gaps = 3/126 (2%)
Query: 617 IFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKT 674
+ L L ++ L V +IK +N + N D ++KL L + K KT ++
Sbjct: 4 LLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQ 63
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDM 733
+P F E F + + +LS+ TL+ +V++K K + +G L NS G + HW +M
Sbjct: 64 PDPEFKETFVFQVALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEM 123
Query: 734 MKYPDH 739
+
Sbjct: 124 KESKGQ 129
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 35/108 (32%), Positives = 49/108 (45%), Gaps = 8/108 (7%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + A+ L + D +G SDPF K L +TKT +T+NP ++E
Sbjct: 1 LTVDVISAENLPSADRNGKSDPFVKFYL----NGEKVFKTKTIKKTLNPVWNESFEVPVP 56
Query: 547 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593
S L + V D D+ G D LG A L+ L P + +L L L
Sbjct: 57 SRVR---AVLKVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPL 101
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115 |
| >gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 3e-09
Identities = 39/124 (31%), Positives = 52/124 (41%), Gaps = 30/124 (24%)
Query: 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL--------TKTSHRLRTKTCLR---- 531
L VT+ AKGL A D++G SDP+C L +VP +K R K L+
Sbjct: 27 IFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVP 86
Query: 532 ------------TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLN 579
T+NP ++E F D+S LH+ + D D DFLG PL
Sbjct: 87 AKSIKVTEVKPQTLNPVWNETFRFEV---EDVSNDQLHLDIWDHDD---DFLGCVNIPLK 140
Query: 580 RLRP 583
L
Sbjct: 141 DLPS 144
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153 |
| >gnl|CDD|176039 cd08393, C2A_SLP-1_2, C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 5e-09
Identities = 35/109 (32%), Positives = 53/109 (48%), Gaps = 3/109 (2%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
GS++ + YD LHV + + + L A D SDP+ K L+P + +T
Sbjct: 2 GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKK 61
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPL 578
+T+NP F+E L Y V +L + L++ V D G + FLGE L
Sbjct: 62 KTLNPVFNETLR-YKVEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 7e-09
Identities = 28/90 (31%), Positives = 39/90 (43%), Gaps = 9/90 (10%)
Query: 635 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTG---VKWKTLNPIFNEEFAIETKITE 691
I C NL+ D SDPF+ +Y+K + + G V LNP F F ++ E
Sbjct: 7 ISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE 66
Query: 692 LSKQTLVITVWDKD----YGKSNDYLGCLE 717
Q L V+D D +D+LG E
Sbjct: 67 --VQKLRFEVYDVDSKSKDLSDHDFLGEAE 94
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|176049 cd08404, C2B_Synaptotagmin-4, C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-08
Identities = 32/94 (34%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G + L++ Y TT L V + +A+ L MD+ G +DP+ K+NL K + +T
Sbjct: 2 GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKC 61
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565
T+NP F+E F + +L S+ LVLD D+
Sbjct: 62 TLNPVFNESFVF-DIPSEELEDISVEFLVLDSDR 94
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-08
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
LG I++++TY+ T L V + RA+GLR +D H + + K++L+ K +T+
Sbjct: 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVD 59
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVL 561
+P F+E +F V+ L SL + V+
Sbjct: 60 GAASPSFNESFSF-KVTSRQLDTASLSLSVM 89
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176055 cd08410, C2B_Synaptotagmin-17, C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 9e-08
Identities = 33/103 (32%), Positives = 51/103 (49%), Gaps = 2/103 (1%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G + L++ Y + L+V + RAK L D+ SDPF K+ LV K +T
Sbjct: 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG 60
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD-KYGHDFLGE 573
TI+P ++E +F V + +L SL V + K +DF+G
Sbjct: 61 TIDPFYNESFSFK-VPQEELENVSLVFTVYGHNVKSSNDFIGR 102
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 135 |
| >gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-07
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 9/94 (9%)
Query: 489 VTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548
+ L K L MD +G SDP+ K L + + ++K C +T+NP++ E+ + +
Sbjct: 4 IVLVEGKNLPPMDDNGLSDPYVKFRL-----GNEKYKSKVCSKTLNPQWLEQFDLHLFDD 58
Query: 549 TDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRL 581
Q L I V D D D F+G L+ L
Sbjct: 59 QS---QILEIEVWDKDTGKKDEFIGRCEIDLSAL 89
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 1e-07
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 504 GTSDPFCKLNLVPL-TKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVL 561
DP+ ++ + L S + +TK NP ++E F V+ +L+ L +V
Sbjct: 23 SIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEF-DVTVPELAF--LRFVVY 79
Query: 562 DDDKYGHDFLGEARFPLNRLRP 583
D+D DFLG+A PL+ LR
Sbjct: 80 DEDSGDDDFLGQACLPLDSLRQ 101
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 36/111 (32%), Positives = 45/111 (40%), Gaps = 19/111 (17%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPF--CKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF- 543
L V + + L A+ +GT DPF LN T T RTK +T NP F E F
Sbjct: 1 LSVRVLECRDL-ALKSNGTCDPFARVTLNYSSKTDTK---RTKVKKKTNNPRFDEAFYFE 56
Query: 544 -----------YSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLR 582
+ V E DL L + + D FLGE R PL L+
Sbjct: 57 LTIGFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQ 107
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-07
Identities = 30/98 (30%), Positives = 44/98 (44%), Gaps = 14/98 (14%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA----- 684
L V +++C +L + SNG DPF ++ L +T VK KT NP F+E F
Sbjct: 1 LSVRVLECRDL-ALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTI 59
Query: 685 ---IETKIT-----ELSKQTLVITVWDKDYGKSNDYLG 714
E K +L K L + +W +D+LG
Sbjct: 60 GFSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLG 97
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137 |
| >gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 2e-07
Identities = 20/83 (24%), Positives = 46/83 (55%), Gaps = 11/83 (13%)
Query: 639 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNE-----EFAIETKITELS 693
+L+ D +G SDPF ++ L++ + +T V +TL+P +++ E + E++
Sbjct: 12 DLLAADKSGLSDPFARVSF---LNQSQ-ETEVIKETLSPTWDQTLIFDEVELYGSPEEIA 67
Query: 694 KQ--TLVITVWDKDYGKSNDYLG 714
+ +V+ ++D+D +++LG
Sbjct: 68 QNPPLVVVELFDQDSVGKDEFLG 90
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135 |
| >gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 2e-07
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 15/102 (14%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + RA + D+ T D + +L L P T + + RTKT +INP ++E TF
Sbjct: 2 LTVRVLRATNITKGDLLSTPDCYVELWL-P-TASDEKKRTKTIKNSINPVWNE--TFE-- 55
Query: 547 SETDLSLQS-----LHILVLDDDKYGHDFLGEARFPLNRLRP 583
+QS L + V+D+D D LG F +++L+
Sbjct: 56 ----FRIQSQVKNVLELTVMDEDYVMDDHLGTVLFDVSKLKL 93
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119 |
| >gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 9/89 (10%)
Query: 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 688
L V +I+ + L D G SDPF L +L + +T +KTLNP +N+ F K
Sbjct: 2 FLQVKVIRASGLAAADIGGKSDPFCVL----ELVNARLQTHTIYKTLNPEWNKIFTFPIK 57
Query: 689 -ITELSKQTLVITVWDKDYGKSNDYLGCL 716
I L +TV+D+D K ++LG +
Sbjct: 58 DIH----DVLEVTVYDEDKDKKPEFLGKV 82
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119 |
| >gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 3e-07
Identities = 30/93 (32%), Positives = 46/93 (49%), Gaps = 6/93 (6%)
Query: 632 VNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKI 689
V ++ +L MD S+ +D F+++ YKT V K+LNP++N E F E
Sbjct: 3 VRVVAARDLPVMDRSSDLTDAFVEVKFG----STTYKTDVVKKSLNPVWNSEWFRFEVDD 58
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722
EL + L I V D D +ND +G + + N
Sbjct: 59 EELQDEPLQIRVMDHDTYSANDAIGKVYIDLNP 91
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-07
Identities = 28/85 (32%), Positives = 53/85 (62%), Gaps = 6/85 (7%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L+V +++ +L P +SNG SDP+ ++ + +++KT V TLNP +N +++ +
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEV----SMGSQEHKTKVVSDTLNPKWN--SSMQFFV 70
Query: 690 TELSKQTLVITVWDKDYGKSNDYLG 714
+L + L ITV+D+D+ +D+LG
Sbjct: 71 KDLEQDVLCITVFDRDFFSPDDFLG 95
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 7/98 (7%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLV--PLTKTSHRLRTKTCLRTINPEFHEKLTFY 544
L V + L DI G SDP+ K++L ++TKT +T+NP+++E+ F
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF- 60
Query: 545 SVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRL 581
+ L V D+++ D FLG+ PLN L
Sbjct: 61 ---RVNPREHRLLFEVFDENRLTRDDFLGQVEVPLNNL 95
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-07
Identities = 31/100 (31%), Positives = 45/100 (45%), Gaps = 13/100 (13%)
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL--RTKTCLRTINPEFHEKLTF 543
L + L + L A D GTSDP+ K K + ++KT + +NP + EK T
Sbjct: 1 QLDIHLKEGRNLAARDRGGTSDPYVKF------KYGGKTVYKSKTIYKNLNPVWDEKFTL 54
Query: 544 YSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 582
+ Q L+I V D D+ DF+G A L+ L
Sbjct: 55 ----PIEDVTQPLYIKVFDYDRGLTDDFMGSAFVDLSTLE 90
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121 |
| >gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 8e-07
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Query: 639 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 698
NL SNG SDP++ L + + +R KT + TLNP ++EEF +E E +
Sbjct: 12 NLKADSSNGLSDPYVTL-VDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGE--PLWIS 68
Query: 699 ITVWDKDYGKSNDYLG 714
TVWD+ + +D G
Sbjct: 69 ATVWDRSFVGKHDLCG 84
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 47.2 bits (113), Expect = 1e-06
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 630 LIVNLIKCTNLIP---MDSNGFS-DPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI 685
+ + + T+L P M GF DPF+ + +R ++T + TLNP+FNE A
Sbjct: 3 VFMEIKSITDLPPLKNMTRTGFDMDPFVII----SFGRRVFRTSWRRHTLNPVFNERLAF 58
Query: 686 ETKITELSKQTLVITVWDKDYGKSNDYLG 714
E E + + V DKD NDY+
Sbjct: 59 EVYPHEKNFD-IQFKVLDKDKFSFNDYVA 86
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
Query: 629 ALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 686
L V++++ +L D G SDP+ L + +++KT TLNP +N + E
Sbjct: 2 VLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG----AQRFKTQTIPNTLNPKWN--YWCE 55
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELC 719
I Q L + +WDKD DYLG + L
Sbjct: 56 FPIFSAQNQLLKLILWDKDRFAGKDYLGEFDIALE 90
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 30/101 (29%), Positives = 48/101 (47%), Gaps = 10/101 (9%)
Query: 627 KRALIVNLIKCTNLIPMDSNGFS--DPFIKLYLK--PDLHKRKYKTG-VKWKTLNPIFNE 681
L + +I L + S DP++++ + P K+KT VK NP++NE
Sbjct: 1 PLTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNE 60
Query: 682 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCC 720
F + + EL+ L V+D+D G +D+LG CL L
Sbjct: 61 TFEFDVTVPELA--FLRFVVYDEDSGD-DDFLGQACLPLDS 98
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 2e-06
Identities = 32/128 (25%), Positives = 52/128 (40%), Gaps = 30/128 (23%)
Query: 494 AKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET-DLS 552
A+ L D G+S + +L+ + RT+T + +NP ++EKL F +VS+ LS
Sbjct: 9 AQDLMPKDGQGSSSAYVELDF-----DGQKKRTRTKPKDLNPVWNEKLVF-NVSDPSRLS 62
Query: 553 LQSLHILVLDD--DKYGHDFLGEAR----------------FPLNR--LRPHISRDLCLN 592
L + V +D FLG R +PL + L + ++ L
Sbjct: 63 NLVLEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGL- 121
Query: 593 LCKHYPVP 600
K Y
Sbjct: 122 --KVYITD 127
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-06
Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 4/100 (4%)
Query: 487 LHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 545
L VT+HRA L D G+SDP+ + K T+ + +NP + E
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKP--LYSTRIIRKDLNPVWEETWFVLV 60
Query: 546 VSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584
+ + + L + D D++ D LG L L
Sbjct: 61 TPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED 100
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 2e-06
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 2/102 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFS-DPFIKLYLKPD-LHKRKYKTGVKW 672
G+I L ++ + L + + C NL D P++K+ L PD H K KT VK
Sbjct: 2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKK 61
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 714
T+NP+FNE + LS + L ++VW K +LG
Sbjct: 62 GTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTLKRRVFLG 103
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176013 cd04048, C2A_Copine, C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 3e-06
Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 17/105 (16%)
Query: 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL----RTKTCLRTINPEFH 538
L ++ + L D+ SDPF + + T S + RT+ +NP+F
Sbjct: 1 PKVELSIS---CRNLLDKDVLSKSDPFVVVYVK--TGGSGQWVEIGRTEVIKNNLNPDFV 55
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDK-----YGHDFLGEARFPL 578
T E +Q L V D D HDFLGEA L
Sbjct: 56 TTFTVDYYFEE---VQKLRFEVYDVDSKSKDLSDHDFLGEAECTL 97
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 120 |
| >gnl|CDD|176018 cd04054, C2A_Rasal1_RasA4, C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-06
Identities = 37/127 (29%), Positives = 59/127 (46%), Gaps = 17/127 (13%)
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFC--KLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF 543
SL++ + K L A DI G+SDP+C K++ + +RT T +T+NP + E+ T
Sbjct: 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVI------IRTATVWKTLNPFWGEEYTV 54
Query: 544 YSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR-DLCLNLCKHYPVPR 601
+ ++ VLD+D D +G+ + H D +NL V
Sbjct: 55 H----LPPGFHTVSFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLT---EVDP 107
Query: 602 EEEVWGE 608
+EEV GE
Sbjct: 108 DEEVQGE 114
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121 |
| >gnl|CDD|176054 cd08409, C2B_Synaptotagmin-15, C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 6/127 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKW 672
G I ++L ++ L V +++ L +D + ++K+ L + K K KT V
Sbjct: 2 GDIQISLTYNPTLNRLTVVVLRARGLRQLDHAH-TSVYVKVSLMIHNKVVKTK-KTEVVD 59
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL--CCNSKGDRLRHW 730
+P FNE F+ + +L +L ++V + + LG + L ++G L HW
Sbjct: 60 GAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHW 119
Query: 731 VDMMKYP 737
DM+ P
Sbjct: 120 NDMLSKP 126
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 137 |
| >gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 7e-06
Identities = 32/100 (32%), Positives = 48/100 (48%), Gaps = 13/100 (13%)
Query: 487 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 545
L VT+ A+GL+ D I GT DP+ + ++ RTK T NP ++E T Y
Sbjct: 4 LAVTIKSARGLKGSDIIGGTVDPYVTFS---ISNRRELARTKVKKDTSNPVWNE--TKYI 58
Query: 546 V--SETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLR 582
+ S T+ L++ V D + D +G A F L+ L
Sbjct: 59 LVNSLTE----PLNLTVYDFNDKRKDKLIGTAEFDLSSLL 94
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 27/93 (29%), Positives = 44/93 (47%), Gaps = 11/93 (11%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + R L D +SDP+ V LT + +++T+ + +NP ++E+LT
Sbjct: 4 LKVRVVRGTNLAVRDFT-SSDPY-----VVLTLGNQKVKTRVIKKNLNPVWNEELTL--- 54
Query: 547 SETDLSLQSLHILVLDDDKY-GHDFLGEARFPL 578
S + L + V D D + D +GEA L
Sbjct: 55 SVPNPMAP-LKLEVFDKDTFSKDDSMGEAEIDL 86
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 8e-06
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 6/76 (7%)
Query: 639 NLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLV 698
+L P D NG SDPF++++ + +T V K+ P +NE F E ++ E + L
Sbjct: 11 DLAPKDRNGTSDPFVRVFYN----GQTLETSVVKKSCYPRWNEVF--EFELMEGADSPLS 64
Query: 699 ITVWDKDYGKSNDYLG 714
+ VWD D ND+LG
Sbjct: 65 VEVWDWDLVSKNDFLG 80
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176062 cd08680, C2_Kibra, C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 8e-06
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Query: 480 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL-TKTSHRLRTKTCLRTINPEFH 538
YDS SL +++ + + L A+ I S + ++ L+P + TS RTK P F+
Sbjct: 9 YDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFN 68
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEA 574
E +S T L ++L + V + LG A
Sbjct: 69 EVFRV-PISSTKLYQKTLQVDVCSVGPDQQEECLGGA 104
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that promotes SWH pathway activity. Kibra contains two amino-terminal WW domains, an internal C2-like domain, and a carboxy-terminal glutamic acid-rich stretch. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 124 |
| >gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Query: 487 LHVTLHRAKGLRAMDIH--GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 544
L V + AK L A D G SDP+ L+ + R +T+T T+NP+++ F
Sbjct: 3 LRVHVVEAKDLAAKDRSGKGKSDPY-----AILSVGAQRFKTQTIPNTLNPKWNYWCEFP 57
Query: 545 SVSETDLSLQSLHILVLDDDKY-GHDFLGEARFPL 578
S + Q L +++ D D++ G D+LGE L
Sbjct: 58 IFSAQN---QLLKLILWDKDRFAGKDYLGEFDIAL 89
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 1e-05
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
Query: 630 LIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETK 688
L+V + + T+L D SDP++ K Y T + K LNP++ E + +
Sbjct: 3 LVVTIHRATDLPKADFGTGSSDPYVTASFAKF-GKPLYSTRIIRKDLNPVWEETWFVLVT 61
Query: 689 ITEL-SKQTLVITVWDKDYGKSNDYLGCLEL 718
E+ + + L +WD D ++D LG +E+
Sbjct: 62 PDEVKAGERLSCRLWDSDRFTADDRLGRVEI 92
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111 |
| >gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 8/88 (9%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNE--EFAIET 687
L+V ++ +L+P D G S +++L D +K +T K K LNP++NE F + +
Sbjct: 2 LVVEVVDAQDLMPKDGQGSSSAYVEL----DFDGQKKRTRTKPKDLNPVWNEKLVFNV-S 56
Query: 688 KITELSKQTLVITVW-DKDYGKSNDYLG 714
+ LS L + V+ D+ G+ +LG
Sbjct: 57 DPSRLSNLVLEVYVYNDRRSGRRRSFLG 84
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127 |
| >gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-05
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 14/98 (14%)
Query: 487 LHVTLHRAKGLRAMDI------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEK 540
L + + A+ L A D G SDP+ + + T ++K +NP+++E
Sbjct: 3 LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQT-----FKSKVIKENLNPKWNE- 56
Query: 541 LTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPL 578
Y ++ Q L I + D+D DFLG L
Sbjct: 57 --VYEAVVDEVPGQELEIELFDEDPDKDDFLGRLSIDL 92
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121 |
| >gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 3e-05
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 9/83 (10%)
Query: 493 RAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS 552
RA+ L+ D +G SDP+ K+ L K R T+NP F + E L
Sbjct: 8 RARNLQPKDPNGKSDPYLKIK---LGKKKINDRDNYIPNTLNPVFGKMFEL----EATLP 60
Query: 553 LQS-LHILVLDDDKYGHD-FLGE 573
S L I V+D D G D +GE
Sbjct: 61 GNSILKISVMDYDLLGSDDLIGE 83
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124 |
| >gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-05
Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 8/85 (9%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V +++ TNL D SDP++ L L +K KT V K LNP++NEE + +
Sbjct: 4 LKVRVVRGTNLAVRDFTS-SDPYVVLTLG----NQKVKTRVIKKNLNPVWNEELTL--SV 56
Query: 690 TELSKQTLVITVWDKDYGKSNDYLG 714
L + V+DKD +D +G
Sbjct: 57 PNPMAP-LKLEVFDKDTFSKDDSMG 80
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145 |
| >gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 6e-05
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 9/104 (8%)
Query: 488 HVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547
V +H A+GL D G +DP+ + +R+ T++PEF + FY
Sbjct: 6 QVHVHSAEGLSKQDSGGGADPYVI-----IKCEGESVRSPVQKDTLSPEFDTQAIFYR-K 59
Query: 548 ETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCL 591
+ + I V + + +FLG+A + R L L
Sbjct: 60 KPR---SPIKIQVWNSNLLCDEFLGQATLSADPNDSQTLRTLPL 100
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126 |
| >gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 7e-05
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + + L+ + +G SDP+C++++ S +TK T+NP+++ + F+
Sbjct: 17 LMVVIVEGRDLKPCNSNGKSDPYCEVSM-----GSQEHKTKVVSDTLNPKWNSSMQFFV- 70
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPL 578
DL L I V D D + DFLG +
Sbjct: 71 --KDLEQDVLCITVFDRDFFSPDDFLGRTEIRV 101
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136 |
| >gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 7e-05
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY-GHDFLGEARFPLNRL 581
RT T+NP F+E+L F V + + + VLD DK+ +D++ + L
Sbjct: 39 FRTSWRRHTLNPVFNERLAF-EVYPHEKNF-DIQFKVLDKDKFSFNDYVATGSLSVQEL 95
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108 |
| >gnl|CDD|176035 cd08389, C2A_Synaptotagmin-14_16, C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 9e-05
Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G +++ YD + L VT+ RA+ + D G S L L+P K R +TK R
Sbjct: 3 GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKV-QR 59
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 583
NP F+E TF V +L+ +L + ++ + +GE PL++L
Sbjct: 60 GPNPVFNETFTFSRVEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNL 112
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124 |
| >gnl|CDD|176020 cd08374, C2F_Ferlin, C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 32/118 (27%), Positives = 51/118 (43%), Gaps = 31/118 (26%)
Query: 628 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNE 681
R ++ N +++ D+N SD ++K +L L + K KT V +++L+ FN
Sbjct: 3 RVIVWN---TRDVLNDDTNITGEKMSDIYVKGWLDG-LEEDKQKTDVHYRSLDGEGNFNW 58
Query: 682 EF-------AIETKITELSKQT--------------LVITVWDKDYGKSNDYLGCLEL 718
F E KI + K+ L + VWD D +D+LG LEL
Sbjct: 59 RFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLEL 116
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the sixth C2 repeat, C2E, and has a type-II topology. Length = 133 |
| >gnl|CDD|176038 cd08392, C2A_SLP-3, C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 2e-04
Identities = 35/111 (31%), Positives = 50/111 (45%), Gaps = 7/111 (6%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS-DPFCKLNLVPLTKTSHRLRTKTCL 530
G IE + Y+ T L +T+ + L D P+ K+ L+P SH + KT +
Sbjct: 2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLP--DKSHNSKRKTAV 59
Query: 531 R--TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPL 578
+ T+NP F+E L Y V LS + L + V FLGE PL
Sbjct: 60 KKGTVNPVFNETLK-YVVEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPL 109
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128 |
| >gnl|CDD|176012 cd04047, C2B_Copine, C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 2e-04
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 635 IKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK--YKTGVKWKTLNPIFNEEFAIETKITEL 692
L D G SDPF+++ + + Y+T V TLNP++ + +L
Sbjct: 7 FSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWKP---FTIPLQKL 63
Query: 693 SK----QTLVITVWDKDYGKSNDYLG 714
+ + I V+D D +D +G
Sbjct: 64 CNGDYDRPIKIEVYDYDSSGKHDLIG 89
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 110 |
| >gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 3e-04
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 21/102 (20%)
Query: 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 544
+ +T+ A+GL A D GTSDP+ V + KT + RTKT + +NP ++EK F
Sbjct: 1 AKISITVVCAQGLIAKDKTGTSDPYVT---VQVGKT--KKRTKTIPQNLNPVWNEKFHFE 55
Query: 545 SVSETDLSLQSLHILVLDDD------------KYGHDFLGEA 574
+ +D + + V D+D + DFLG+
Sbjct: 56 CHNSSD----RIKVRVWDEDDDIKSRLKQKFTRESDDFLGQT 93
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127 |
| >gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 29/92 (31%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYL-KPDLHKR--KYKTGVKWKTLNPIFNEEFAIE 686
L V ++ +L D G SDP++K+ L PD + +T KTLNP +NEEF
Sbjct: 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
+ L+ V+D++ +D+LG +E+
Sbjct: 62 VNP---REHRLLFEVFDENRLTRDDFLGQVEV 90
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133 |
| >gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 9/97 (9%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L + A+ L D +GTSDPF V + L T ++ P ++E F
Sbjct: 2 LRCHVLEARDLAPKDRNGTSDPF-----VRVFYNGQTLETSVVKKSCYPRWNEVFEF--- 53
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 582
+ + L + V D D +DFLG+ F + L+
Sbjct: 54 ELMEGADSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQ 90
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123 |
| >gnl|CDD|176052 cd08407, C2B_Synaptotagmin-13, C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 7e-04
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 3/127 (2%)
Query: 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF--SDPFIKLYLKPDLHKRKYKTGVK 671
G++ L++ + L+V +IK NL D +K+ LK K K K +
Sbjct: 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKR 60
Query: 672 WK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHW 730
K +NP++NE E L+ ++ + V ++D + LG L ++ G +HW
Sbjct: 61 AKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHW 120
Query: 731 VDMMKYP 737
+M+ P
Sbjct: 121 EEMLDNP 127
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 138 |
| >gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.001
Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 12/96 (12%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V L AK L P+ +L + KT+ + +K RT NP + E TF V
Sbjct: 2 LFVYLDSAKNLPLAKSTKEPSPYVELTV---GKTTQK--SKVKERTNNPVWEEGFTFL-V 55
Query: 547 SETDLSLQSLHILVLDDDKYGHDF-LGEARFPLNRL 581
+ Q L I V DD LG PL+ L
Sbjct: 56 R--NPENQELEIEVKDDK---TGKSLGSLTLPLSEL 86
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105 |
| >gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 29/98 (29%), Positives = 49/98 (50%), Gaps = 6/98 (6%)
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 545
L + L + L + D +G SDPF KL L + S +TK +T+NP ++E+ T
Sbjct: 1041 YLTIMLRSGENLPSSDENGYSDPFVKLF---LNEKSVY-KTKVVKKTLNPVWNEEFTI-E 1095
Query: 546 VSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRP 583
V + ++++ D + +D LG A L++L P
Sbjct: 1096 VLNRVKDVLTINVNDWDSGE-KNDLLGTAEIDLSKLEP 1132
|
Length = 1227 |
| >gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.002
Identities = 29/94 (30%), Positives = 42/94 (44%), Gaps = 7/94 (7%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V L AKGL+ D G DP+ + +T R NPE++EK F +V
Sbjct: 3 LEVLLISAKGLQDTDFLGKIDPYVIIQC----RTQERKSKVAKGDGRNPEWNEKFKF-TV 57
Query: 547 SETDLSLQS-LHILVLDDDKY-GHDFLGEARFPL 578
+ L + ++D D + DF+GEA L
Sbjct: 58 EYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124 |
| >gnl|CDD|176051 cd08406, C2B_Synaptotagmin-12, C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.003
Identities = 27/89 (30%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G I L+++Y T L V + +A+ L + T+DPF K+ L+ + + +T
Sbjct: 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRD 61
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILV 560
NP F+E + F SV L SL + V
Sbjct: 62 DTNPIFNEAMIF-SVPAIVLQDLSLRVTV 89
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136 |
| >gnl|CDD|176067 cd08685, C2_RGS-like, C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Score = 37.8 bits (88), Expect = 0.003
Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 673
G++ L++ R L +++++ L +S + ++K+ L PD + + KT
Sbjct: 1 GQLKLSIEGQN--RKLTLHVLEAKGLRSTNSGT-CNSYVKISLSPDKEVRFRQKTSTVPD 57
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG 724
+ NP+F+E F+ + + K+ LV TVW+ K + L C S G
Sbjct: 58 SANPLFHETFSFDVNERDYQKRLLV-TVWN----KLSKSRDSGLLGCMSFG 103
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 119 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| KOG1028|consensus | 421 | 100.0 | ||
| KOG1013|consensus | 362 | 100.0 | ||
| PF02318 | 118 | FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 | 100.0 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.97 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.97 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.96 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.95 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.95 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.95 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.94 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.94 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.94 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.94 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.94 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.93 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.92 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.91 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.9 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.9 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.89 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.89 | |
| cd08677 | 118 | C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a | 99.88 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.88 | |
| KOG2059|consensus | 800 | 99.88 | ||
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.87 | |
| cd08393 | 125 | C2A_SLP-1_2 C2 domain first repeat present in Syna | 99.87 | |
| cd08381 | 122 | C2B_PI3K_class_II C2 domain second repeat present | 99.87 | |
| cd08392 | 128 | C2A_SLP-3 C2 domain first repeat present in Synapt | 99.86 | |
| cd04029 | 125 | C2A_SLP-4_5 C2 domain first repeat present in Syna | 99.86 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.86 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.85 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.85 | |
| cd08680 | 124 | C2_Kibra C2 domain found in Human protein Kibra. K | 99.85 | |
| cd08389 | 124 | C2A_Synaptotagmin-14_16 C2A domain first repeat pr | 99.85 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.85 | |
| cd08388 | 128 | C2A_Synaptotagmin-4-11 C2A domain first repeat pre | 99.85 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.85 | |
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.84 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.84 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.83 | |
| cd04028 | 146 | C2B_RIM1alpha C2 domain second repeat contained in | 99.83 | |
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.83 | |
| cd08385 | 124 | C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe | 99.83 | |
| cd08387 | 124 | C2A_Synaptotagmin-8 C2A domain first repeat presen | 99.83 | |
| KOG1013|consensus | 362 | 99.82 | ||
| cd04031 | 125 | C2A_RIM1alpha C2 domain first repeat contained in | 99.82 | |
| cd08521 | 123 | C2A_SLP C2 domain first repeat present in Synaptot | 99.82 | |
| cd08407 | 138 | C2B_Synaptotagmin-13 C2 domain second repeat prese | 99.82 | |
| cd08406 | 136 | C2B_Synaptotagmin-12 C2 domain second repeat prese | 99.82 | |
| cd08386 | 125 | C2A_Synaptotagmin-7 C2A domain first repeat presen | 99.82 | |
| cd04030 | 127 | C2C_KIAA1228 C2 domain third repeat present in unc | 99.82 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.82 | |
| KOG0696|consensus | 683 | 99.81 | ||
| cd08685 | 119 | C2_RGS-like C2 domain of the Regulator Of G-Protei | 99.8 | |
| cd08390 | 123 | C2A_Synaptotagmin-15-17 C2A domain first repeat pr | 99.8 | |
| cd04020 | 162 | C2B_SLP_1-2-3-4 C2 domain second repeat present in | 99.8 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.79 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.79 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.78 | |
| cd08409 | 137 | C2B_Synaptotagmin-15 C2 domain second repeat prese | 99.78 | |
| cd08404 | 136 | C2B_Synaptotagmin-4 C2 domain second repeat presen | 99.77 | |
| cd08408 | 138 | C2B_Synaptotagmin-14_16 C2 domain second repeat pr | 99.77 | |
| cd08405 | 136 | C2B_Synaptotagmin-7 C2 domain second repeat presen | 99.77 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.76 | |
| cd08403 | 134 | C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe | 99.76 | |
| cd08402 | 136 | C2B_Synaptotagmin-1 C2 domain second repeat presen | 99.76 | |
| cd08395 | 120 | C2C_Munc13 C2 domain third repeat in Munc13 (mamma | 99.75 | |
| cd08384 | 133 | C2B_Rabphilin_Doc2 C2 domain second repeat present | 99.75 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.75 | |
| cd04035 | 123 | C2A_Rabphilin_Doc2 C2 domain first repeat present | 99.75 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.74 | |
| cd08410 | 135 | C2B_Synaptotagmin-17 C2 domain second repeat prese | 99.74 | |
| cd04009 | 133 | C2B_Munc13-like C2 domain second repeat in Munc13 | 99.74 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.74 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.73 | |
| cd08682 | 126 | C2_Rab11-FIP_classI C2 domain found in Rab11-famil | 99.73 | |
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.73 | |
| cd00276 | 134 | C2B_Synaptotagmin C2 domain second repeat present | 99.72 | |
| cd08692 | 135 | C2B_Tac2-N C2 domain second repeat found in Tac2-N | 99.71 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.71 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.71 | |
| KOG1028|consensus | 421 | 99.71 | ||
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.7 | |
| cd04016 | 121 | C2_Tollip C2 domain present in Toll-interacting pr | 99.7 | |
| cd04022 | 127 | C2A_MCTP_PRT_plant C2 domain first repeat found in | 99.7 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.7 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.69 | |
| cd04010 | 148 | C2B_RasA3 C2 domain second repeat present in RAS p | 99.69 | |
| KOG1030|consensus | 168 | 99.69 | ||
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.68 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.68 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.68 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.68 | |
| cd08376 | 116 | C2B_MCTP_PRT C2 domain second repeat found in Mult | 99.68 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.68 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.68 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.67 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.67 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.67 | |
| cd04042 | 121 | C2A_MCTP_PRT C2 domain first repeat found in Multi | 99.67 | |
| KOG3799|consensus | 169 | 99.67 | ||
| cd04026 | 131 | C2_PKC_alpha_gamma C2 domain in Protein Kinase C ( | 99.66 | |
| cd08401 | 121 | C2A_RasA2_RasA3 C2 domain first repeat present in | 99.66 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.66 | |
| cd08375 | 136 | C2_Intersectin C2 domain present in Intersectin. A | 99.66 | |
| cd08681 | 118 | C2_fungal_Inn1p-like C2 domain found in fungal Ing | 99.66 | |
| cd04019 | 150 | C2C_MCTP_PRT_plant C2 domain third repeat found in | 99.66 | |
| KOG0696|consensus | 683 | 99.65 | ||
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.65 | |
| cd04036 | 119 | C2_cPLA2 C2 domain present in cytosolic PhosphoLip | 99.65 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.65 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.65 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.65 | |
| cd04025 | 123 | C2B_RasA1_RasA4 C2 domain second repeat present in | 99.64 | |
| cd08379 | 126 | C2D_MCTP_PRT_plant C2 domain fourth repeat found i | 99.64 | |
| cd04041 | 111 | C2A_fungal C2 domain first repeat; fungal group. C | 99.64 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.64 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.64 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.64 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.64 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.63 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.63 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.63 | |
| cd08378 | 121 | C2B_MCTP_PRT_plant C2 domain second repeat found i | 99.63 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.62 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.62 | |
| cd04033 | 133 | C2_NEDD4_NEDD4L C2 domain present in the Human neu | 99.62 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.62 | |
| COG5038 | 1227 | Ca2+-dependent lipid-binding protein, contains C2 | 99.62 | |
| cd04024 | 128 | C2A_Synaptotagmin-like C2 domain first repeat pres | 99.62 | |
| cd08678 | 126 | C2_C21orf25-like C2 domain found in the Human chro | 99.62 | |
| cd08688 | 110 | C2_KIAA0528-like C2 domain found in the Human KIAA | 99.61 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.61 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.6 | |
| cd08391 | 121 | C2A_C2C_Synaptotagmin_like C2 domain first and thi | 99.6 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.6 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.6 | |
| cd08377 | 119 | C2C_MCTP_PRT C2 domain third repeat found in Multi | 99.6 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.59 | |
| cd04015 | 158 | C2_plant_PLD C2 domain present in plant phospholip | 99.59 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.59 | |
| KOG1030|consensus | 168 | 99.59 | ||
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.59 | |
| cd04017 | 135 | C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl | 99.58 | |
| cd04043 | 126 | C2_Munc13_fungal C2 domain in Munc13 (mammalian un | 99.58 | |
| cd04039 | 108 | C2_PSD C2 domain present in Phosphatidylserine dec | 99.58 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.58 | |
| cd08400 | 126 | C2_Ras_p21A1 C2 domain present in RAS p21 protein | 99.57 | |
| cd04054 | 121 | C2A_Rasal1_RasA4 C2 domain first repeat present in | 99.57 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.57 | |
| cd08690 | 155 | C2_Freud-1 C2 domain found in 5' repressor element | 99.57 | |
| cd04046 | 126 | C2_Calpain C2 domain present in Calpain proteins. | 99.57 | |
| cd04014 | 132 | C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) | 99.57 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.56 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.56 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.56 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.55 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.55 | |
| cd04011 | 111 | C2B_Ferlin C2 domain second repeat in Ferlin. Ferl | 99.54 | |
| cd08382 | 123 | C2_Smurf-like C2 domain present in Smad ubiquitina | 99.54 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.53 | |
| cd04050 | 105 | C2B_Synaptotagmin-like C2 domain second repeat pre | 99.53 | |
| cd08373 | 127 | C2A_Ferlin C2 domain first repeat in Ferlin. Ferli | 99.53 | |
| cd04027 | 127 | C2B_Munc13 C2 domain second repeat in Munc13 (mamm | 99.52 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.52 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.52 | |
| cd08675 | 137 | C2B_RasGAP C2 domain second repeat of Ras GTPase a | 99.52 | |
| cd04049 | 124 | C2_putative_Elicitor-responsive_gene C2 domain pre | 99.51 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.51 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.5 | |
| cd04018 | 151 | C2C_Ferlin C2 domain third repeat in Ferlin. Ferli | 99.5 | |
| cd08676 | 153 | C2A_Munc13-like C2 domain first repeat in Munc13 ( | 99.5 | |
| cd04032 | 127 | C2_Perforin C2 domain of Perforin. Perforin contai | 99.49 | |
| cd04044 | 124 | C2A_Tricalbin-like C2 domain first repeat present | 99.49 | |
| cd04037 | 124 | C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli | 99.48 | |
| cd04048 | 120 | C2A_Copine C2 domain first repeat in Copine. There | 99.48 | |
| cd04038 | 145 | C2_ArfGAP C2 domain present in Arf GTPase Activati | 99.48 | |
| cd04040 | 115 | C2D_Tricalbin-like C2 domain fourth repeat present | 99.48 | |
| cd08691 | 137 | C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li | 99.47 | |
| cd08394 | 127 | C2A_Munc13 C2 domain first repeat in Munc13 (mamma | 99.47 | |
| cd08383 | 117 | C2A_RasGAP C2 domain (first repeat) of Ras GTPase | 99.46 | |
| cd04045 | 120 | C2C_Tricalbin-like C2 domain third repeat present | 99.45 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.45 | |
| cd04047 | 110 | C2B_Copine C2 domain second repeat in Copine. Ther | 99.44 | |
| cd04051 | 125 | C2_SRC2_like C2 domain present in Soybean genes Re | 99.43 | |
| PLN03008 | 868 | Phospholipase D delta | 99.43 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.42 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.41 | |
| cd08686 | 118 | C2_ABR C2 domain in the Active BCR (Breakpoint clu | 99.41 | |
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.4 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.4 | |
| cd00275 | 128 | C2_PLC_like C2 domain present in Phosphoinositide- | 99.39 | |
| KOG1326|consensus | 1105 | 99.37 | ||
| cd04021 | 125 | C2_E3_ubiquitin_ligase C2 domain present in E3 ubi | 99.35 | |
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.35 | |
| KOG1328|consensus | 1103 | 99.31 | ||
| cd04052 | 111 | C2B_Tricalbin-like C2 domain second repeat present | 99.3 | |
| PLN03008 | 868 | Phospholipase D delta | 99.26 | |
| PF00168 | 85 | C2: C2 domain; InterPro: IPR000008 The C2 domain i | 99.26 | |
| cd04013 | 146 | C2_SynGAP_like C2 domain present in Ras GTPase act | 99.25 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.25 | |
| KOG0905|consensus | 1639 | 99.23 | ||
| KOG1326|consensus | 1105 | 99.23 | ||
| KOG0905|consensus | 1639 | 99.19 | ||
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.19 | |
| cd08374 | 133 | C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli | 99.19 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 99.18 | |
| KOG1011|consensus | 1283 | 99.14 | ||
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 99.13 | |
| smart00239 | 101 | C2 Protein kinase C conserved region 2 (CalB). Ca2 | 99.04 | |
| KOG1327|consensus | 529 | 99.04 | ||
| KOG1328|consensus | 1103 | 98.99 | ||
| cd00030 | 102 | C2 C2 domain. The C2 domain was first identified i | 98.98 | |
| KOG1011|consensus | 1283 | 98.95 | ||
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.94 | |
| KOG1031|consensus | 1169 | 98.91 | ||
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.9 | |
| PLN02223 | 537 | phosphoinositide phospholipase C | 98.84 | |
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.82 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.79 | |
| PLN02952 | 599 | phosphoinositide phospholipase C | 98.78 | |
| PLN02270 | 808 | phospholipase D alpha | 98.73 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 98.72 | |
| KOG2059|consensus | 800 | 98.71 | ||
| KOG0169|consensus | 746 | 98.69 | ||
| PLN02230 | 598 | phosphoinositide phospholipase C 4 | 98.68 | |
| KOG1031|consensus | 1169 | 98.67 | ||
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.67 | |
| PLN02222 | 581 | phosphoinositide phospholipase C 2 | 98.63 | |
| PLN02228 | 567 | Phosphoinositide phospholipase C | 98.62 | |
| KOG1264|consensus | 1267 | 98.57 | ||
| KOG2060|consensus | 405 | 98.51 | ||
| KOG0169|consensus | 746 | 98.5 | ||
| PLN02270 | 808 | phospholipase D alpha | 98.5 | |
| KOG1264|consensus | 1267 | 98.44 | ||
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.39 | |
| cd08689 | 109 | C2_fungal_Pkc1p C2 domain found in protein kinase | 98.36 | |
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 98.1 | |
| PLN02352 | 758 | phospholipase D epsilon | 97.78 | |
| KOG2060|consensus | 405 | 97.76 | ||
| cd08683 | 143 | C2_C2cd3 C2 domain found in C2 calcium-dependent d | 97.64 | |
| cd08684 | 103 | C2A_Tac2-N C2 domain first repeat found in Tac2-N | 97.55 | |
| PLN02352 | 758 | phospholipase D epsilon | 97.34 | |
| PLN02964 | 644 | phosphatidylserine decarboxylase | 97.28 | |
| KOG1327|consensus | 529 | 97.1 | ||
| PLN02964 | 644 | phosphatidylserine decarboxylase | 96.86 | |
| KOG3837|consensus | 523 | 96.77 | ||
| KOG1265|consensus | 1189 | 96.68 | ||
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 96.42 | |
| KOG1265|consensus | 1189 | 96.34 | ||
| PF05715 | 61 | zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 | 96.26 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 96.23 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 96.18 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 96.15 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 96.08 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 95.19 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 95.18 | |
| cd08693 | 173 | C2_PI3K_class_I_beta_delta C2 domain present in cl | 94.78 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 94.75 | |
| cd08398 | 158 | C2_PI3K_class_I_alpha C2 domain present in class I | 94.59 | |
| KOG3837|consensus | 523 | 94.22 | ||
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 94.17 | |
| cd08380 | 156 | C2_PI3K_like C2 domain present in phosphatidylinos | 93.89 | |
| cd00065 | 57 | FYVE FYVE domain; Zinc-binding domain; targets pro | 93.89 | |
| PF01363 | 69 | FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f | 93.51 | |
| smart00064 | 68 | FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | 93.21 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 93.19 | |
| cd08397 | 159 | C2_PI3K_class_III C2 domain present in class III p | 92.84 | |
| PF12416 | 340 | DUF3668: Cep120 protein; InterPro: IPR022136 This | 92.66 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 92.6 | |
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 92.26 | |
| PTZ00303 | 1374 | phosphatidylinositol kinase; Provisional | 92.09 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 91.98 | |
| PF15627 | 156 | CEP76-C2: CEP76 C2 domain | 91.79 | |
| PF14429 | 184 | DOCK-C2: C2 domain in Dock180 and Zizimin proteins | 91.79 | |
| cd04012 | 171 | C2A_PI3K_class_II C2 domain first repeat present i | 91.74 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 91.07 | |
| cd08399 | 178 | C2_PI3K_class_I_gamma C2 domain present in class I | 91.05 | |
| PRK12495 | 226 | hypothetical protein; Provisional | 89.97 | |
| cd08694 | 196 | C2_Dock-A C2 domains found in Dedicator Of CytoKin | 88.37 | |
| cd08695 | 189 | C2_Dock-B C2 domains found in Dedicator Of CytoKin | 87.77 | |
| smart00142 | 100 | PI3K_C2 Phosphoinositide 3-kinase, region postulat | 86.41 | |
| PF00792 | 142 | PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I | 85.92 | |
| KOG1452|consensus | 442 | 85.62 | ||
| PF10358 | 143 | NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; | 85.44 | |
| KOG1729|consensus | 288 | 82.93 |
| >KOG1028|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-47 Score=422.98 Aligned_cols=270 Identities=34% Similarity=0.547 Sum_probs=246.0
Q ss_pred CCCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeee
Q psy7848 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546 (754)
Q Consensus 467 ~~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I 546 (754)
.....|+|+|++.|+.....|.|+|++|++|+.+|..|.+||||+++|+|+.. .+++|++.++|+||+|||+|.|. |
T Consensus 149 ~~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~--~k~kT~v~r~tlnP~fnEtf~f~-v 225 (421)
T KOG1028|consen 149 NVKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKK--GKFKTRVHRKTLNPVFNETFRFE-V 225 (421)
T ss_pred cceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCC--CcceeeeeecCcCCccccceEee-c
Confidence 34789999999999999999999999999999999778899999999999874 88999999999999999999996 8
Q ss_pred eccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 547 SETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 547 ~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
...++...+|.|.|||+|+|++ ++||++.++|..+.......+|.++.. .... .....|+|+++|+|.|
T Consensus 226 ~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~------~~~~----~~~~~gel~~sL~Y~p 295 (421)
T KOG1028|consen 226 PYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQP------SSTD----SEELAGELLLSLCYLP 295 (421)
T ss_pred CHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeecccc------ccCC----cccccceEEEEEEeec
Confidence 8999999999999999999999 999999999999887766566666643 1110 0122289999999999
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
..|+|+|.|++|+||..++.++.+|||||+++..+..+. ++||.++++++||+|||+|.|.|+.+.|.+.+|.|+|||+
T Consensus 296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~ 375 (421)
T KOG1028|consen 296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH 375 (421)
T ss_pred CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence 999999999999999999999999999999999876443 9999999999999999999999999999999999999999
Q ss_pred cCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 705 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
|.++.+++||.+.|+..+.+++..||.+|+++|+.++++||.|..
T Consensus 376 d~~~~~~~iG~~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~~ 420 (421)
T KOG1028|consen 376 DTLGSNDLIGRCILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLRS 420 (421)
T ss_pred ccccccceeeEEEecCCCCchHHHHHHHHHhCccCceeeeEeccc
Confidence 999999999999999999899999999999999999999999975
|
|
| >KOG1013|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=319.13 Aligned_cols=282 Identities=37% Similarity=0.596 Sum_probs=261.0
Q ss_pred CCCCCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEe
Q psy7848 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 544 (754)
Q Consensus 465 ~~~~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~ 544 (754)
.++...+|.++|.+.|+..+..+.++|..|++|.+++.++..|||++++++|......+++|++..+++||.|||+..+.
T Consensus 73 ~~~at~lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~ 152 (362)
T KOG1013|consen 73 SDPATTLGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYE 152 (362)
T ss_pred cchhhhccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceec
Confidence 34447899999999999999999999999999999999999999999999997777788999999999999999999988
Q ss_pred eeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 545 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 545 ~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
.|..++...+.+++.|+|.+.+.+ +++|+..|++..|...+.+.|..+|+...+... ....+.+++|+|.++|.|
T Consensus 153 ~i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~r----ad~~~~E~rg~i~isl~~ 228 (362)
T KOG1013|consen 153 GITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSER----ADRDEDEERGAILISLAY 228 (362)
T ss_pred ccccchhhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCccc----ccccchhhccceeeeecc
Confidence 888888888999999999999998 999999999999999988888888876554221 122335899999999999
Q ss_pred cccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 624 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 624 ~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
......|.|.+++|.+|..+|.+|.+||||+.++.++.+++ ++||.+.++|+||+||+.|.|++.+.+|....+.|+||
T Consensus 229 ~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvg 308 (362)
T KOG1013|consen 229 SSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVG 308 (362)
T ss_pred CcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeec
Confidence 99999999999999999999999999999999999887776 99999999999999999999999999999999999999
Q ss_pred EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
|++.+++++++|++.+++...++...||..++.+++..++.||.|..+
T Consensus 309 d~~~G~s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~~ 356 (362)
T KOG1013|consen 309 DYDIGKSNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLETE 356 (362)
T ss_pred ccCCCcCccCCCcccccccccchhhcCccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999875
|
|
| >PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-35 Score=270.85 Aligned_cols=113 Identities=40% Similarity=0.808 Sum_probs=101.7
Q ss_pred CCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHH--HHhhhhccCC--CccccccccccccCCCccccccccCCCCcc
Q psy7848 86 EPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERV--DNMKRNVTGG--AAAAHACALCGDKFSPIFDRLGLFGAKCLV 161 (754)
Q Consensus 86 ~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l--~~~k~~~~~~--~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~ 161 (754)
.+||+||+++|++||+||++|+++|++||++|+++| +.+|+.+.++ ..++++|++|+++|| |++|++++
T Consensus 1 s~Lt~eE~~~I~~Vl~R~~~l~~~E~~Ri~kLk~~L~~e~~r~~~~~~~~~~~~~~C~~C~~~fg-------~l~~~~~~ 73 (118)
T PF02318_consen 1 SHLTEEEREIILQVLQRDEELRKKEEERIRKLKQELQKEKMRREALGNSQKYGERHCARCGKPFG-------FLFNRGRV 73 (118)
T ss_dssp TTS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSCSTTHCCSB-TTTS-BCS-------CTSTTCEE
T ss_pred CCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCcchhhhCCccc-------ccCCCCCc
Confidence 489999999999999999999999999999999999 6677777655 347799999999999 89999999
Q ss_pred ccccccccccccccccccCCCCCCceeeccchhhhhhhhhcccccccc
Q psy7848 162 CHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKV 209 (754)
Q Consensus 162 C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~~ 209 (754)
|.+|+++||++|+++.+ ++..|+|++|++++++|++||+|||++
T Consensus 74 C~~C~~~VC~~C~~~~~----~~~~WlC~vC~k~rel~~~sG~Wf~~~ 117 (118)
T PF02318_consen 74 CVDCKHRVCKKCGVYSK----KEPIWLCKVCQKQRELKKKSGEWFYEE 117 (118)
T ss_dssp ETTTTEEEETTSEEETS----SSCCEEEHHHHHHHHHHHHCSHHHHCC
T ss_pred CCcCCccccCccCCcCC----CCCCEEChhhHHHHHHHHHhhhHHhcc
Confidence 99999999999999975 588999999999999999999999995
|
The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A. |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=253.44 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=126.8
Q ss_pred cceeEEeeeccccccceeeccccccccccCCC--CCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~--~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
.|+|+++|.|.|..++|.|.|++|+||..++. .+.+||||||+|.++..+ .++||+++++++||+|||+|.|.|+.+
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~ 80 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSE 80 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHH
Confidence 39999999999999999999999999999983 345999999999987644 388999999999999999999999999
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
+|.+.+|.|+|||+|.+++|++||+|.|++.+.|++++||.+|+.+|+.++++||.|.
T Consensus 81 ~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~~~hW~~ml~~p~~~va~WH~L~ 138 (138)
T cd08407 81 LLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTERQHWEEMLDNPRRQIAMWHQLH 138 (138)
T ss_pred HhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcHHHHHHHHHhCCCCchhEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999985
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-30 Score=247.13 Aligned_cols=135 Identities=30% Similarity=0.402 Sum_probs=128.2
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
.|+|+++|.|.+..++|.|.|++|+||+.++.+|.+||||+|+|.+++.+. ++||+++++++||+|||+|.|.|+..++
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHh
Confidence 399999999999999999999999999999999999999999999876543 8899999999999999999999998889
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
.+.+|.|+|||+|.++++++||++.|+..+.|++++||++|+.+|+.++++||.|.
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l~ 136 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPLR 136 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeecC
Confidence 99999999999999999999999999999999999999999999999999999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-29 Score=240.02 Aligned_cols=132 Identities=16% Similarity=0.265 Sum_probs=120.7
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCC-CCccceeEEEEeecCcc
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTL-NPIFNEEFAIETKITEL 692 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTl-NP~wNEtF~F~V~~~dL 692 (754)
.+|+++|+|.|..++|+|.|++|+||++++..+.+||||||+|.+.+.+ .++||+++++|+ ||+|||+|.|+|+..+
T Consensus 1 ~el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~- 79 (135)
T cd08692 1 AELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQE- 79 (135)
T ss_pred CeEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchh-
Confidence 3799999999999999999999999999977778899999999977655 399999999996 6999999999998765
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCC-CCchhhhHHhhhcCCCcceeeEEee
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s-~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
.+..|.|+|||++.+++|++||++.||.++ .+++.+||.+|+.+|+++|++||.|
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L 135 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL 135 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence 468999999999999999999999999987 5678999999999999999999987
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-28 Score=233.36 Aligned_cols=134 Identities=27% Similarity=0.412 Sum_probs=126.1
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc--ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
|+|+++|.|.+..++|.|.|++|+||+.++.+|.+|||||++|.|+.++ .++||+++++++||+|||+|.|.|+..++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l 81 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL 81 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence 7999999999999999999999999999999999999999999986554 37899999999999999999999998889
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCc-hhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge-~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
...+|.|+|||++.++++++||++.|++...|. +..||++|+.+|+.++++||.|.
T Consensus 82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l~ 138 (138)
T cd08408 82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTLL 138 (138)
T ss_pred CccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeecC
Confidence 999999999999999999999999999998874 78999999999999999999984
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=228.67 Aligned_cols=133 Identities=24% Similarity=0.388 Sum_probs=123.9
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
.|+|+|+|.|.+..++|.|.|++|+||+.++ .+.+||||+|+|.++..+ .++||+++++++||+|||+|.|.|+.+++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHh
Confidence 4999999999999999999999999999998 778999999999876544 37899999999999999999999998889
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecC--CCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCN--SKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~--s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...+|.|+|||++.++.+++||++.|+.. +.|++.+||++|+.+|+++|++||.|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l 136 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHAL 136 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeC
Confidence 88999999999999999999999999964 57899999999999999999999998
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=225.99 Aligned_cols=135 Identities=36% Similarity=0.608 Sum_probs=126.0
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
.|+|.++|.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++... .+++|.++++++||+|||+|.|.+...++
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l 80 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQI 80 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHh
Confidence 49999999999999999999999999999999999999999999764433 37899999999999999999999987777
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
....|.|+|||++.+++|++||.+.|++.+.+++..||++|+.+|+.++++||.|+
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~~~~W~~~~~~~~~~~~~wh~~~ 136 (136)
T cd08402 81 QKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDMLASPRRPIAQWHTLQ 136 (136)
T ss_pred CCCEEEEEEEeCCCCCCCceeEEEEECCccCChHHHHHHHHHhCCCCeeeEEEEcC
Confidence 77899999999999999999999999999999999999999999999999999986
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-27 Score=224.21 Aligned_cols=133 Identities=30% Similarity=0.511 Sum_probs=122.5
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.++|.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++... .++||+++++|+||+|||+|.|.+...++.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~ 80 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE 80 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence 8999999999999999999999999999999999999999998654332 378999999999999999999999888888
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCCCc-hhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge-~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...|.|+|||++..+++++||++.|+..+.+. +..||+.|+.+|+.++++||.|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l 135 (135)
T cd08410 81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL 135 (135)
T ss_pred CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence 88999999999999999999999999877554 7899999999999999999987
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.1e-27 Score=222.24 Aligned_cols=132 Identities=61% Similarity=0.999 Sum_probs=123.8
Q ss_pred eeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCC
Q psy7848 616 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSK 694 (754)
Q Consensus 616 eL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~ 694 (754)
+|+|+|.|.+..+.|.|.|++|+||++++.+|.+||||+|++.++..+ .++||+++++++||+|||+|.|.+...++..
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~ 80 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK 80 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence 489999999999999999999999999999999999999999876544 3889999999999999999999998777778
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
..|.|+|||++.++++++||.+.|++.+.++...||++|+.+|++++++||.|
T Consensus 81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~~l~~~~~~~~~wh~l 133 (133)
T cd08384 81 KTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRHWLDCLKNPDKKIEAWHTL 133 (133)
T ss_pred CEEEEEEEeCCCCCCccEEEEEEEecCCCCchHHHHHHHHhCCCCChheeecC
Confidence 89999999999999999999999999999999999999999999999999987
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=221.18 Aligned_cols=135 Identities=40% Similarity=0.658 Sum_probs=125.5
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|.++|+|.+..+.|.|.|++|+||+.++.+|.+||||+|++.+.+.. .++||+++++++||+|||+|.|.++..++
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHh
Confidence 59999999999999999999999999999999999999999999765433 37899999999999999999999987777
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
.+..|.|+|||++.++++++||.+.|++.+.+.+.+||++|+..|+.++++||.|.
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~~~~~w~~~~~~~~~~~~~wh~l~ 136 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSGGLELKHWKDMLSKPRQPVAQWHRLK 136 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccCCchHHHHHHHHhCCCCchhEEEecC
Confidence 77899999999999999999999999999999999999999999999999999984
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-26 Score=219.47 Aligned_cols=133 Identities=32% Similarity=0.569 Sum_probs=124.1
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.+++.|.+..+.|.|.|++|++|++++.+|.+||||+|++.+.+.+ .+++|.++++++||+|||+|.|.+...++.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~ 80 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD 80 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence 8999999999999999999999999999999999999999999765433 388999999999999999999999777777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...|.|+|||++.+++|++||.+.|++.+.+.+..||++|+.+|+.++++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~~~~~~~~w~~~~~~~~~~~~~wh~~ 134 (134)
T cd08403 81 NVSLIIAVVDYDRVGHNELIGVCRVGPNADGQGREHWNEMLANPRKPIAQWHQL 134 (134)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEECCCCCCchHHHHHHHHHCCCCeeeEeecC
Confidence 778999999999999999999999999998999999999999999999999987
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-26 Score=219.24 Aligned_cols=134 Identities=32% Similarity=0.524 Sum_probs=125.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|.|+|+|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++... .++||.++++++||+|||+|.|.++..++
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHh
Confidence 59999999999999999999999999999999999999999999766433 37899999999999999999999987777
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
....|.|+|||++.++++++||.+.|++.+.+++..||++|...|++++.+||.|
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~~~~~w~~l~~~~~~~i~~Wh~l 135 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKASGSGGHHWKEVCNPPRRQIAEWHML 135 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcCCCchHHHHHHHHhCCCCeeeEEEec
Confidence 7789999999999999999999999999998899999999999999999999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-25 Score=208.48 Aligned_cols=116 Identities=22% Similarity=0.259 Sum_probs=107.1
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 694 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~ 694 (754)
|+|+++|.|.+..+.|+|.|++|+||+ + .|.+||||||+|.++.++.+++|+++++|+||+|||+|.|.|+.+++.+
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~ 77 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD 77 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence 689999999999999999999999998 3 4669999999998765556889999999999999999999999999999
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCC--CCchhhhHHhh
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDM 733 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~ge~~~hW~~l 733 (754)
.+|.|+|||+|.+++|++||++.|++.+ .+.+..||.+|
T Consensus 78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 9999999999999999999999999996 57888999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-24 Score=205.36 Aligned_cols=133 Identities=38% Similarity=0.598 Sum_probs=124.2
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.|+|.|.+..+.|.|.|++|+||+..+.++.+||||++++.++.... +++|+++.++.||.|||+|.|.+...++.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~ 80 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE 80 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence 89999999999999999999999999999989999999999998765443 78999999999999999999999877777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
...|.|+|||++.++.+++||.+.|++...+.+.+||++|+..|++++++||.|
T Consensus 81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~wh~~ 134 (134)
T cd00276 81 EVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEHWNEMLASPRKPIARWHKL 134 (134)
T ss_pred CcEEEEEEEecCCCCCCceeEEEEECCCCCCcHHHHHHHHHhCCCCceEEeeeC
Confidence 789999999999988999999999999998899999999999999999999987
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.9e-24 Score=211.39 Aligned_cols=135 Identities=35% Similarity=0.552 Sum_probs=122.4
Q ss_pred cceeEEeeeccc------------cccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccc
Q psy7848 614 HGKIFLTLCFST------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFN 680 (754)
Q Consensus 614 ~GeL~VsL~y~p------------~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wN 680 (754)
+|+|.++|.|.| ..+.|.|.|++|+||+.++.+|.+||||+|++.++..+ .++||+++++|+||+||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999999 44899999999999999999999999999999876544 48999999999999999
Q ss_pred eeEEEEe-ecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC-------------CCchhhhHHhhhcCCCcceeeEEe
Q psy7848 681 EEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-------------KGDRLRHWVDMMKYPDHKHEGIHN 746 (754)
Q Consensus 681 EtF~F~V-~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s-------------~ge~~~hW~~ll~~P~~~ie~Wh~ 746 (754)
|+|.|.+ ...++.+..|.|+|||++.+++|++||.+.|++.. .+++..||++|+.+|..+|++..+
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~~~~~ 160 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVEGTLP 160 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCChHHHHHHHHHHhCCCCeEEEEEe
Confidence 9999984 45677778999999999999999999999999885 488999999999999999999998
Q ss_pred ec
Q psy7848 747 LS 748 (754)
Q Consensus 747 L~ 748 (754)
|.
T Consensus 161 ~~ 162 (162)
T cd04020 161 LR 162 (162)
T ss_pred cC
Confidence 73
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=198.14 Aligned_cols=117 Identities=18% Similarity=0.310 Sum_probs=106.7
Q ss_pred eeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc--ceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 616 KIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 616 eL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
+|+++|.|.+..+.|.|.|++|+||++++..|.+|||||++|+|+.++ .++||+++++++||+|||+|.|+|+.++|.
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~ 81 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY 81 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence 689999999999999999999999999999999999999999998764 489999999999999999999999999999
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC---CchhhhHHh
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK---GDRLRHWVD 732 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~---ge~~~hW~~ 732 (754)
+.+|.|+|||++.++++++||+++|++... ++...+||+
T Consensus 82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~ 123 (124)
T cd08680 82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYN 123 (124)
T ss_pred cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCcccccccc
Confidence 999999999999999999999999998753 234555654
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=196.53 Aligned_cols=110 Identities=38% Similarity=0.610 Sum_probs=102.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCC-CCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
+|+|+|+|.|.+..+.|.|.|++|+||++++.. |.+||||+|++.|+... .++||+++++|+||+|||+|.|.+...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~ 80 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREE 80 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHH
Confidence 599999999999999999999999999999976 89999999999987654 3789999999999999999999998888
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
+....|.|+|||++.++++++||++.|++...
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~ 112 (125)
T cd08393 81 LPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSW 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeEEEEEecCcc
Confidence 88899999999999999999999999999864
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.1e-23 Score=194.62 Aligned_cols=123 Identities=33% Similarity=0.531 Sum_probs=109.9
Q ss_pred cceeEEeeeccccccceeeccccccccccCCC-CCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
.|+|+++|.|.+..+.|.|.|++|+||++.+. +|.+||||+|++.|+..+ .++||+++++++||+|||+|.|.|...+
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHH
Confidence 49999999999999999999999999998875 588999999999887654 3889999999999999999999998888
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
+....|.|+|||++.++++++||++.|++.+. .++..++.|++|+
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~------------~~~~~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSW------------NFDSQHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcc------------cccCCcccEEECc
Confidence 88889999999999999999999999999864 3445677888775
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=195.79 Aligned_cols=110 Identities=29% Similarity=0.438 Sum_probs=102.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCC-CCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
.|+|.|+|.|.+..+.|.|.|++|+||++++.. |.+||||+++|.|+.+.. ++||+++++++||+|||+|.|.|...+
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADL 80 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHH
Confidence 499999999999999999999999999999875 999999999999886554 889999999999999999999998888
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
+....|.|.|||++.++++++||++.|++...
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~ 112 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADW 112 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCc
Confidence 88899999999999999999999999999863
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd08677 C2A_Synaptotagmin-13 C2 domain | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-22 Score=187.42 Aligned_cols=114 Identities=16% Similarity=0.262 Sum_probs=101.3
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|+|+|.|++..+.|+|+|++|+||+ . .|.+||||+++|+++.. ..+++|+++++|+||+|||+|.| .|+.+++
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~-~--~g~sDPYVKv~L~~~~k-~~k~kT~v~rktlnPvfnE~f~F-~v~~~~l 75 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS-V--DAGCECYISGCVSVSEG-QKEAQTALKKLALHTQWEEELVF-PLPEEES 75 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC-C--CCCCCeEEEEEEcCCcC-ccEEEcceecCCCCCccccEEEE-eCCHHHh
Confidence 689999999999999999999999998 3 46699999999987543 36789999999999999999999 4999999
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceE
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLC 590 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~ 590 (754)
...+|.|+|||+|++++ ++||++.+++.++........|
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W 115 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQW 115 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccch
Confidence 99999999999999999 9999999999987555444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-23 Score=192.05 Aligned_cols=107 Identities=32% Similarity=0.538 Sum_probs=98.4
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEe-ecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V-~~~d 691 (754)
.|+|.++|.|. .+.|.|.|++|+||++++ +|.+||||+|+|.++..+ .++||+++++++||+|||+|.|.+ +..+
T Consensus 1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~ 77 (122)
T cd08381 1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED 77 (122)
T ss_pred CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence 38999999999 689999999999999999 899999999999987654 389999999999999999999997 6667
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
+....|.|+|||++.+++|++||++.|++...
T Consensus 78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l 109 (122)
T cd08381 78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKL 109 (122)
T ss_pred hCCCEEEEEEEeCCCCcCCcEEEEEEEecccc
Confidence 88899999999999999999999999999864
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >KOG2059|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=225.83 Aligned_cols=236 Identities=25% Similarity=0.358 Sum_probs=191.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
...|.|.|.+|+||++.+..|..||||.|.+. .....||.++.+++.|.|.|+|.|+ |+.. ...|.|.|||.
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~lD----~E~v~RT~tv~ksL~PF~gEe~~~~-iP~~---F~~l~fYv~D~ 75 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD----QEEVCRTATVEKSLCPFFGEEFYFE-IPRT---FRYLSFYVWDR 75 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEeec----chhhhhhhhhhhhcCCccccceEEe-cCcc---eeeEEEEEecc
Confidence 46799999999999999999999999999996 3468899999999999999999984 5544 58899999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc--ccceeecccccccc
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK--KRALIVNLIKCTNL 640 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~--~g~L~V~V~~A~nL 640 (754)
| +++ +.||.+.|.-.+|......+.|+.|.. +++ +.+..|+|++.+.+.+. ...+...++.++++
T Consensus 76 d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~---VD~--------dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~ 143 (800)
T KOG2059|consen 76 D-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQP---VDP--------DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQG 143 (800)
T ss_pred c-cccccccceeeeeHHHHhhCCCCccceeccc---cCC--------ChhhceeEEEEEEeccccCCCcchhhhhhhccc
Confidence 9 677 999999999999887777777777653 222 25789999999999765 35677888888888
Q ss_pred ccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC-------------ccCCCeEEEEEEE-ccC
Q psy7848 641 IPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQTLVITVWD-KDY 706 (754)
Q Consensus 641 ~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-------------dL~~~~L~ItV~D-~d~ 706 (754)
.+.+.++ +|||+.+.+.........+|.++++|.||.|||.|.|.+... +-....|.+.+|| .+.
T Consensus 144 ~P~~~~~-~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~ 222 (800)
T KOG2059|consen 144 LPIINGQ-CDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNL 222 (800)
T ss_pred CceeCCC-CCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhh
Confidence 7775554 999999998654333468999999999999999999998644 1123568889998 566
Q ss_pred CCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
+..++|+|.+.|++... | -....+.|+.|+|+|-
T Consensus 223 ~~~~~FlGevrv~v~~~------~------~~s~p~~W~~Lqp~~~ 256 (800)
T KOG2059|consen 223 VINDVFLGEVRVPVDVL------R------QKSSPAAWYYLQPRPN 256 (800)
T ss_pred hhhhhhceeEEeehhhh------h------hccCccceEEEecCCC
Confidence 77799999999998742 2 2345679999999875
|
|
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-22 Score=191.15 Aligned_cols=124 Identities=24% Similarity=0.347 Sum_probs=106.2
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCC-CCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~ 688 (754)
....|+|.++|.| ..+.|.|.|++|+||++++ .+|.+|||||++|.++..+ .++||+++++|+||+|||+|.|.|.
T Consensus 14 ~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~ 91 (146)
T cd04028 14 SPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVS 91 (146)
T ss_pred CCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEc
Confidence 4568999999999 4689999999999999874 6789999999999987654 3899999999999999999999996
Q ss_pred cCccCCCeEEEEEE-EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 689 ITELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 689 ~~dL~~~~L~ItV~-D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
+.+..|.|+|| |++.+.+|+|||.+.|+|+.. ..+.....||.|.+.-
T Consensus 92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l------------~~~~~~~~Wy~L~~~~ 140 (146)
T cd04028 92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDL------------DLSNLVIGWYKLFPTS 140 (146)
T ss_pred ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccc------------cCCCCceeEEecCCcc
Confidence 67889999999 688888999999999999864 2234566788777653
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2 | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-22 Score=186.43 Aligned_cols=122 Identities=29% Similarity=0.453 Sum_probs=108.7
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
+|+|+|+|.|+...+.|.|+|++|+||+.++.. |.+||||+++++|+.....+++|+++++++||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~-v~~~ 79 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK-VERE 79 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-CCHH
Confidence 599999999999999999999999999999976 89999999999987755567899999999999999999994 7777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++....|.|.|||+|.+++ ++||++.|+|.++...+....|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L 124 (125)
T cd08393 80 ELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPL 124 (125)
T ss_pred HhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEEC
Confidence 7888899999999999888 9999999999999776555555544
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety |
| >cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-21 Score=183.69 Aligned_cols=119 Identities=29% Similarity=0.492 Sum_probs=106.2
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|+|+|.|+ .+.|.|+|++|+||+.++ .+.+||||+|+++|+.....+.+|++++++.||+|||+|.|..++..++
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l 78 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDL 78 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHh
Confidence 8999999998 799999999999999999 8999999999999876556789999999999999999999965477778
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
....|+|.|||+|.+++ +|||++.|+|.++........|+.|
T Consensus 79 ~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 79 QQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred CCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 88999999999999987 9999999999999876555555544
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut |
| >cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3 | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-21 Score=182.49 Aligned_cols=113 Identities=27% Similarity=0.419 Sum_probs=104.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.|+|+|+|.|+...+.|.|+|++|+||+.++.. |.+||||+++++|+.....++||++++++.||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~-v~~~ 79 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV-VEAD 79 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-cCHH
Confidence 499999999999999999999999999999975 99999999999997766678899999999999999999995 7888
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
++....|+|.|||++.+++ +|||++.|+|.++...
T Consensus 80 ~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~ 115 (128)
T cd08392 80 LLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFE 115 (128)
T ss_pred HhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccC
Confidence 8888999999999999888 9999999999998654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids |
| >cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5 | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=180.59 Aligned_cols=122 Identities=30% Similarity=0.508 Sum_probs=108.8
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~-~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.|+|+|++.|+...+.|.|+|++|+||+..+. .+.+||||+|++.|+.....++||+++++++||+|||+|.|. ++..
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~~~ 79 (125)
T cd04029 1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS-ISHS 79 (125)
T ss_pred CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE-CCHH
Confidence 49999999999999999999999999999875 588999999999987655567899999999999999999994 7777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++....|.|.|||+|.+++ ++||++.|+|..+...+....|++|
T Consensus 80 ~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l 124 (125)
T cd04029 80 QLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPL 124 (125)
T ss_pred HhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEEC
Confidence 7878899999999999888 9999999999999887666666654
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2 |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.6e-21 Score=181.41 Aligned_cols=109 Identities=33% Similarity=0.511 Sum_probs=101.2
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
+|+|+++|.|.+..+.|.|.|++|+||++++.+|.+||||+|++.++. ..++||+++++++||+|||+|.|.+...++.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~ 80 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDR-SNTKQSKIHKKTLNPEFDESFVFEVPPQELP 80 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCC-CCcEeCceEcCCCCCCcccEEEEeCCHHHhC
Confidence 699999999999999999999999999999999999999999997653 3478999999999999999999999887887
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
...|.|+|||++.++.|++||++.|++...
T Consensus 81 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~ 110 (124)
T cd08387 81 KRTLEVLLYDFDQFSRDECIGVVELPLAEV 110 (124)
T ss_pred CCEEEEEEEECCCCCCCceeEEEEEecccc
Confidence 889999999999999999999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.9e-21 Score=181.73 Aligned_cols=122 Identities=21% Similarity=0.291 Sum_probs=110.7
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEE-eecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~-V~~~dL 692 (754)
.|+|.+++.|.+..++|.|+|++|+||++++.+|.+||||++++.++. +.++||+++++ +||+|||+|.|. +...++
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~-~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l 79 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSK-KQRAKTKVQRG-PNPVFNETFTFSRVEPEEL 79 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCC-cceeecccccC-CCCcccCEEEECCCCHHHh
Confidence 699999999999999999999999999999999999999999998764 45889999887 999999999998 888888
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
.+..|.|+|||++.++++++||.+.|+++.. .++.....|++|+|
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l------------~~~~~~~~w~~L~p 124 (124)
T cd08389 80 NNMALRFRLYGVERMRKERLIGEKVVPLSQL------------NLEGETTVWLTLEP 124 (124)
T ss_pred ccCEEEEEEEECCCcccCceEEEEEEecccc------------CCCCCceEEEeCCC
Confidence 9999999999999999999999999999864 34566888998875
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=182.36 Aligned_cols=119 Identities=37% Similarity=0.639 Sum_probs=105.9
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
.|+|.|++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..+++|+++++++||+|||+|.|.+...++.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~ 80 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDK-KKKFETKVHRKTLNPVFNETFTFKVPYSELG 80 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCC-CCceecccCcCCCCCceeeeEEEeCCHHHhC
Confidence 699999999999999999999999999999999999999999997653 3478999999999999999999999877777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC--CchhhhHHhh
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDM 733 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~--ge~~~hW~~l 733 (754)
...|.|.|||++.++.+++||.+.|++... +....+|++|
T Consensus 81 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08385 81 NKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDL 122 (124)
T ss_pred CCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEc
Confidence 789999999999999999999999999863 4455555554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08680 C2_Kibra C2 domain found in Human protein Kibra | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-21 Score=179.57 Aligned_cols=111 Identities=24% Similarity=0.386 Sum_probs=103.4
Q ss_pred EEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC-ceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 473 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 473 ~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~-~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
+|+|+|.|++..+.|.|+|++|+||+.++..+.+||||+++|+|+... ..+++|+++++++||+|||+|.|. |+.+++
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~-v~~~~L 80 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP-ISSTKL 80 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-CCHHHh
Confidence 699999999999999999999999999998899999999999997754 368899999999999999999995 899999
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
...+|+|+|||++.+++ ++||++.|+|.++...
T Consensus 81 ~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~ 114 (124)
T cd08680 81 YQKTLQVDVCSVGPDQQEECLGGAQISLADFESS 114 (124)
T ss_pred hcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCC
Confidence 99999999999999888 9999999999998654
|
Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom |
| >cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-21 Score=178.43 Aligned_cols=121 Identities=28% Similarity=0.406 Sum_probs=110.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|++.|+...+.|.|+|++|+||+.++..+.+||||++.++|++. .+.+|+++++ .||+|||+|.|..++..+
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~--~~~kTkv~~~-~nP~fnE~F~f~~i~~~~ 78 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKK--QRAKTKVQRG-PNPVFNETFTFSRVEPEE 78 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCc--ceeecccccC-CCCcccCEEEECCCCHHH
Confidence 7999999999999999999999999999999889999999999988654 6789999887 999999999996688888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+...+|+|.|||++.+++ ++||++.|+|.++..+.....|++|+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 79 LNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred hccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 889999999999999987 99999999999998877777777664
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-21 Score=179.94 Aligned_cols=126 Identities=29% Similarity=0.484 Sum_probs=109.2
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCC-CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEE-EeecC
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAI-ETKIT 690 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F-~V~~~ 690 (754)
.+|+|.+++.|.+..+.|.|.|++|+||+.++.. |.+||||+|++.++. ..++||+++++++||+|||+|.| .+...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~-~~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEK-EHKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCc-CceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 3799999999999999999999999999999876 899999999997653 34779999999999999999999 57767
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
++....|.|+|||+|.+++|++||++.|++.... + .-+.+.+.|..|||
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~--------~--~~~~~~~~~~~~~~ 128 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGAD--------L--LNEGELLVSREIQP 128 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccC--------C--CCCceEEEEEeccC
Confidence 7777899999999999999999999999998642 1 11355778888875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11 | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-20 Score=177.96 Aligned_cols=121 Identities=34% Similarity=0.550 Sum_probs=106.6
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
+|+|+|++.|+...+.|.|+|++|+||+.++.. +.+||||+|+++++.. .+.||+++++++||+|||+|.|+.++..
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~--~~~kT~v~~~t~nP~wnE~F~f~~~~~~ 79 (128)
T cd08388 2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKE--HKVKTRVLRKTRNPVYDETFTFYGIPYN 79 (128)
T ss_pred CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcC--ceeeccEEcCCCCCceeeEEEEcccCHH
Confidence 799999999999999999999999999999876 8999999999987543 5789999999999999999999667777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC--CccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH--ISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~--~~~~~~~~L 593 (754)
++....|.|.|||+|.+++ ++||++.|+|.++... .....|+++
T Consensus 80 ~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~ 126 (128)
T cd08388 80 QLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREI 126 (128)
T ss_pred HhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEec
Confidence 7777889999999999887 9999999999998655 344455554
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-21 Score=180.51 Aligned_cols=111 Identities=36% Similarity=0.610 Sum_probs=101.6
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
..|+|.|+|.|.+..+.|.|.|++|+||+.++.++.+||||+|++.++... .++||+++++++||+|||+|.|.+...+
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~ 80 (127)
T cd04030 1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEE 80 (127)
T ss_pred CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHH
Confidence 369999999999999999999999999999999999999999999876543 4899999999999999999999998878
Q ss_pred cCCCeEEEEEEEccCC--CCCceeEEEEEecCCC
Q psy7848 692 LSKQTLVITVWDKDYG--KSNDYLGCLELCCNSK 723 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~--~~ddfLG~v~L~l~s~ 723 (754)
+....|.|.|||++.+ +.+++||.+.|++...
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l 114 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDL 114 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccc
Confidence 8889999999999975 6899999999999863
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-21 Score=178.88 Aligned_cols=117 Identities=25% Similarity=0.490 Sum_probs=99.5
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.+++.| ..+.|.|.|++|+||++++ .|.+||||+++|.|+..+. ++||+++++++||+|||+|.|.+...++.
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~ 77 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ 77 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence 789999998 5789999999999999998 8899999999999876544 88999999999999999999999876664
Q ss_pred CCeEEEEEEEccCCC-CCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 694 KQTLVITVWDKDYGK-SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~-~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
..|.|+|||++.+. .+++||++.|++.+. . .+..+.+||.|
T Consensus 78 -~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~----------~--~~~~~~~Wy~l 119 (119)
T cd08685 78 -KRLLVTVWNKLSKSRDSGLLGCMSFGVKSI----------V--NQKEISGWYYL 119 (119)
T ss_pred -CEEEEEEECCCCCcCCCEEEEEEEecHHHh----------c--cCccccceEeC
Confidence 57999999999875 478999999999753 2 24456677765
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.2e-21 Score=178.66 Aligned_cols=109 Identities=37% Similarity=0.578 Sum_probs=100.3
Q ss_pred ceeEEeeeccccccceeeccccccccccCC-CCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
|+|.++|.|.+..+.|.|.|++|+||+.++ ..|.+||||+|++.++... .+++|+++++++||+|||+|.|.+...++
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l 80 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL 80 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence 899999999999999999999999999998 7889999999999876543 37899999999999999999999987778
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
....|.|.|||++.++++++||.+.|++...
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l 111 (123)
T cd08521 81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSW 111 (123)
T ss_pred CCCEEEEEEEeCCCCcCCceeeEEEEecccc
Confidence 7889999999999999999999999999864
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-20 Score=174.62 Aligned_cols=124 Identities=32% Similarity=0.474 Sum_probs=107.1
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEe-ecCc
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KITE 691 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V-~~~d 691 (754)
+.|+|++++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..+++|+++++++||+|||+|.|.+ +...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 1 NLGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred CccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCC-CcceeeeeecCCCCCccceeEEEcccCHHH
Confidence 4699999999999999999999999999999999999999999997653 3478999999999999999999984 4445
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
+....|.|+|||++.++.+++||.+.|++.... .+.....|+.|+|
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~l~~ 125 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVD------------LTEEQTFWKDLKP 125 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEeccccc------------CCCCcceEEecCC
Confidence 666789999999999999999999999998632 2445677887765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-20 Score=177.53 Aligned_cols=120 Identities=25% Similarity=0.338 Sum_probs=102.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
..+|+|+|+|.| ..+.|.|+|++|+||+.++ ..|.+||||+++|++++....+.||+++++|+||+|||+|.|. +.
T Consensus 15 ~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~-v~ 91 (146)
T cd04028 15 PSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFD-VS 91 (146)
T ss_pred CCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEE-Ec
Confidence 469999999999 4789999999999999875 6788999999999997765678999999999999999999995 44
Q ss_pred ccccCcceEEEEEe-eCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 548 ETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 548 ~~el~~~~L~~sV~-D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+....|.|+|| |++.+.+ +|||++.|+|.++..+.....|+.|.
T Consensus 92 ---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~ 137 (146)
T cd04028 92 ---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLF 137 (146)
T ss_pred ---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecC
Confidence 56789999999 6888777 99999999999997665554555543
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-20 Score=176.99 Aligned_cols=109 Identities=33% Similarity=0.590 Sum_probs=99.3
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEe-ecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET-KITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V-~~~d 691 (754)
.|+|.++|.|.+..+.|.|.|++|+||+.++.++.+||||+|++.++... .++||+++++++||+|||+|.|.+ ...+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 59999999999999999999999999999999999999999999875443 488999999999999999999985 4456
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
+....|.|+|||++.++.+++||.+.|++..
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~ 112 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLAD 112 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccc
Confidence 6678999999999999999999999999986
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-20 Score=172.60 Aligned_cols=122 Identities=34% Similarity=0.556 Sum_probs=107.9
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.+|+|.|++.|+...+.|.|+|++|+||+.++..+.+||||++++.++.. ..++|++++++.||+|||.|.|. +...
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~-i~~~ 77 (124)
T cd08385 1 KLGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFTFK-VPYS 77 (124)
T ss_pred CccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCC--CceecccCcCCCCCceeeeEEEe-CCHH
Confidence 37999999999999999999999999999999889999999999987543 57899999999999999999994 6666
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
++....|.|.|||+|.++. ++||++.|+|.++..+.....|+.|+
T Consensus 78 ~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 78 ELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred HhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 6667899999999999887 99999999999987766666666653
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and |
| >cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8 | Back alignment and domain information |
|---|
Probab=99.83 E-value=5e-20 Score=172.76 Aligned_cols=121 Identities=30% Similarity=0.574 Sum_probs=108.3
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.+|+|+|++.|++..+.|.|+|++|+||+.++..+.+||||+|+++++.. ..++|++++++.||+|||+|.|. ++..
T Consensus 1 ~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f~-v~~~ 77 (124)
T cd08387 1 TRGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRS--NTKQSKIHKKTLNPEFDESFVFE-VPPQ 77 (124)
T ss_pred CCCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCC--CcEeCceEcCCCCCCcccEEEEe-CCHH
Confidence 37999999999999999999999999999999999999999999986543 56899999999999999999994 7777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++....|.|.|||++.+++ ++||++.|+|.++..+.....|+.|
T Consensus 78 ~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l 122 (124)
T cd08387 78 ELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKI 122 (124)
T ss_pred HhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEEC
Confidence 7777899999999999887 9999999999999877666666655
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv |
| >KOG1013|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=196.50 Aligned_cols=258 Identities=21% Similarity=0.192 Sum_probs=220.9
Q ss_pred CCcccchhhccccccCceeecccccccCCCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhccCCCccc
Q psy7848 56 LSDVSLFGFVHRLQTGWSVKAGQLRRWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAA 135 (754)
Q Consensus 56 ~~~~~~~~~~~~l~~~~s~~~~~~~~~~~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~ 135 (754)
+.|++ +|+ .|+++|++++.+.+++.-..+|+..+- |+|+++++.++..++.+|..+.++|..||.+.++++.
T Consensus 70 ~~d~~-~at--~lg~~~~~~~y~~~~~~~~~tl~~a~~---lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~l-- 141 (362)
T KOG1013|consen 70 SYDSD-PAT--TLGALEFELLYDSESRMLDTTLDRAKG---LKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTL-- 141 (362)
T ss_pred ccccc-hhh--hccchhhhhhhhhhhhhcceeechhcc---cchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCc--
Confidence 56777 666 999999999998888877788988776 9999999999999999999999999999999999888
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCC-ceeeccchhhhhhhhhcccccccccCCCc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKEN-IWLCKICAETREMWKKSNAWFFKVSGLPY 214 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~-~WlC~vC~~~rel~~~sG~Wf~~~~~~~~ 214 (754)
+.|..|..+++ ++......|.+|++.||.+|...++ .+..+. .|+|++|..++ +.++.||++
T Consensus 142 N~~w~etev~~-------~i~~~~~~~K~~Rk~vcdn~~~~~~-~sqGq~r~~lkKl~p~q~---k~f~~cl~~------ 204 (362)
T KOG1013|consen 142 NPEWNETEVYE-------GITDDDTHLKVLRKVVCDNDKKTHN-ESQGQSRVSLKKLKPLQR---KSFNICLEK------ 204 (362)
T ss_pred Ccceeccceec-------ccccchhhhhhhheeeccCcccccc-cCcccchhhhhccChhhc---chhhhhhhc------
Confidence 99999999999 8888899999999999999999875 233333 59999999999 899999999
Q ss_pred ccccccccccccCCCcccCCcccccCCCCcccCCCCCCchhhccccCCccCCCCCCccccccccCCCCCCCCCChhHHHH
Q psy7848 215 ECLDHYTTEAVSGLPYECLDHYTTEAGLPKYTIPKKTQPEKLAFNRRPIENLKPPTWSLKIASANKSSEDNSSSDEEDAR 294 (754)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~k~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (754)
++| +.+. +
T Consensus 205 --------------------------~lp----~~ra--------------------------------d---------- 212 (362)
T KOG1013|consen 205 --------------------------SLP----SERA--------------------------------D---------- 212 (362)
T ss_pred --------------------------cCC----cccc--------------------------------c----------
Confidence 232 0000 0
Q ss_pred HhhccccccccCCCCCCCccccccCCCCCCCcchhhhhhcccccCCCCcccccccccccccccccccCCCCCcccccccc
Q psy7848 295 LARSKQVVSDARATCPNREVVTTARSSYPCSEEEEEEEVETDAEKSPSLKSIDIFTAISEFTSIANVSDTEQPIVIPIRK 374 (754)
Q Consensus 295 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (754)
T Consensus 213 -------------------------------------------------------------------------------- 212 (362)
T KOG1013|consen 213 -------------------------------------------------------------------------------- 212 (362)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCccccCCCCCCCCCCCCCCcCCCCCcccCCCCCcccccCCCccCCCCCCCCCCCCCCcCCCCCCccCCCCCccccc
Q psy7848 375 IASGGSVKLEPQSFPRPTSPVDSEKFSSSATVRSSPLMSRHTLPLTVNENSISPVSPLSPICNGNFNTQQESSGTLKRGV 454 (754)
Q Consensus 375 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~r~s~p~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~s~~~~~ 454 (754)
| + .
T Consensus 213 ---------------------------------------~----------------~---------------------~- 215 (362)
T KOG1013|consen 213 ---------------------------------------R----------------D---------------------E- 215 (362)
T ss_pred ---------------------------------------c----------------c---------------------c-
Confidence 0 0 0
Q ss_pred ccCcccccccCCCCCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCC
Q psy7848 455 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 534 (754)
Q Consensus 455 ~s~~~~~~e~~~~~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlN 534 (754)
.+.+|.|.+++.|+.....|.|++++|.+|..+|.++-+||||++++.|+.....+.+|.+.++|+|
T Consensus 216 -------------~E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~ 282 (362)
T KOG1013|consen 216 -------------DEERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLN 282 (362)
T ss_pred -------------hhhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCC
Confidence 0236778888888888888999999999999999999999999999998887778999999999999
Q ss_pred CeeceeEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 535 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 535 P~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
|+||+.|.| .|...+|....+.|.|||++..+. +++|-+..-+-..
T Consensus 283 p~fd~~~~~-~i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~rr 329 (362)
T KOG1013|consen 283 PEFDEEFFY-DIGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYRR 329 (362)
T ss_pred ccccccccc-cCCccchhcceEEEeecccCCCcCccCCCccccccccc
Confidence 999999987 699999999999999999999866 9999877655443
|
|
| >cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-20 Score=170.70 Aligned_cols=122 Identities=30% Similarity=0.463 Sum_probs=104.7
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|+|.|+...+.|.|+|++|+||+.++..+.+||||+|++.++.....+++|++++++.||+|||+|.|..+...+
T Consensus 2 ~G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 2 TGRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred cEEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHH
Confidence 79999999999999999999999999999998899999999999875544568899999999999999999996556566
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||++.++. ++||++.++|.+.... ....|++|
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~L 124 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALLD-DEPHWYPL 124 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEeccccccc-CCcceEEC
Confidence 667899999999999887 9999999999983322 33344444
|
RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as |
| >cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-19 Score=169.92 Aligned_cols=120 Identities=28% Similarity=0.513 Sum_probs=105.6
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
|+|+|++.|+...+.|.|+|++|+||+.++ ..+.+||||+|++.++.....+.+|++++++.||+|||+|.|. +...+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-i~~~~ 79 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH-ISKSQ 79 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe-CCHHH
Confidence 899999999999999999999999999998 7789999999999876554467899999999999999999995 77777
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEee
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLN 592 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~ 592 (754)
+....|.|.|||++.+++ ++||++.++|.++..+.....|++
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~ 122 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYP 122 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEE
Confidence 777899999999999887 999999999999976555544543
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into |
| >cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13 | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.1e-20 Score=176.33 Aligned_cols=109 Identities=25% Similarity=0.327 Sum_probs=100.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~--~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
.|+|.|+|.|.+..+.|.|+|++|+||+.+|. .+.+||||+|+|+++.....+.||+++++++||+|||.|.| .|+.
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F-~v~~ 79 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMF-ELPS 79 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEE-ECCH
Confidence 49999999999999999999999999999983 35589999999998766667889999999999999999999 4888
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
+++...+|.|+|||+|.+++ ++||++.|++..
T Consensus 80 ~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~ 112 (138)
T cd08407 80 ELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT 112 (138)
T ss_pred HHhCccEEEEEEEeCCCCcCcceeceEEecCcC
Confidence 89989999999999999998 999999999975
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy |
| >cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12 | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-20 Score=175.81 Aligned_cols=110 Identities=25% Similarity=0.307 Sum_probs=101.1
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
.|+|.|+|.|++..+.|.|+|++|+||+.++..|.+||||+|+|+|++....+.+|+++++++||+|||+|.|. |+..+
T Consensus 1 ~G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~-v~~~~ 79 (136)
T cd08406 1 VGEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS-VPAIV 79 (136)
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-CCHHH
Confidence 49999999999999999999999999999998999999999999987655567899999999999999999994 88888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
+....|+|+|||+|.+++ ++||++.|.....
T Consensus 80 l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~ 111 (136)
T cd08406 80 LQDLSLRVTVAESTEDGKTPNVGHVIIGPAAS 111 (136)
T ss_pred hCCcEEEEEEEeCCCCCCCCeeEEEEECCCCC
Confidence 989999999999999888 9999999987643
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl |
| >cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-19 Score=170.16 Aligned_cols=122 Identities=34% Similarity=0.572 Sum_probs=108.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|++.|+...+.|.|+|++|+||+.++..+.+||||+++++++.. ...+|++++++.||+|||+|.|..++.+.
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~~P~Wne~f~f~~~~~~~ 79 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPYEK 79 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCC--cceeeeeecCCCCCccceeEEEcccCHHH
Confidence 6999999999999999999999999999999889999999999976543 56899999999999999999996555666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+....|.|+|||++.+++ +|||++.|+|.++........|..|.
T Consensus 80 l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 80 LQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred hCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 666889999999999887 99999999999998877777777663
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-19 Score=169.49 Aligned_cols=122 Identities=30% Similarity=0.466 Sum_probs=107.8
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
.|+|+|+|.|+...+.|.|+|++|+||+..+..+.+||||+|+++++.....+++|++++++.||+|||+|.|. +...+
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~-i~~~~ 80 (127)
T cd04030 2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP-VSLEE 80 (127)
T ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-cCHHH
Confidence 79999999999999999999999999999998899999999999886655678999999999999999999995 77677
Q ss_pred cCcceEEEEEeeCCCC--CC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKY--GH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~--g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||.+.+ ++ ++||++.|+|.++........|+.|
T Consensus 81 l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L 126 (127)
T cd04030 81 LKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDL 126 (127)
T ss_pred hcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEEC
Confidence 7778999999999975 45 9999999999999776555555544
|
KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1 |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.8e-20 Score=170.17 Aligned_cols=108 Identities=31% Similarity=0.536 Sum_probs=99.2
Q ss_pred ceeEEeeeccccccceeeccccccccccCC-CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS 693 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~ 693 (754)
|+|.|+|.|.+..+.|.|.|++|+||+.++ .++.+||||+|++.++. ...++|+++++++||+|||+|.|.+...++.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~-~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDE-RRSLQSKVKRKTQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCC-CCceEeeeEcCCCCCccceEEEEEcCHHHhc
Confidence 899999999999999999999999999998 68899999999997654 3467899999999999999999999877777
Q ss_pred CCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 694 KQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 694 ~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
...|.|.|||++..+.+++||.+.|++...
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l 109 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDL 109 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccce
Confidence 789999999999988999999999999863
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >KOG0696|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-20 Score=198.50 Aligned_cols=129 Identities=34% Similarity=0.626 Sum_probs=114.8
Q ss_pred ccccccccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeE
Q psy7848 605 VWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEF 683 (754)
Q Consensus 605 ~~~~~~~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF 683 (754)
..+.+..+.+|+|.+.+.. ....|.|.|.+|+||.+||.||.|||||++.|.|+.... ++||++++.|+||+|||+|
T Consensus 159 lCG~DhtE~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtf 236 (683)
T KOG0696|consen 159 LCGTDHTERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETF 236 (683)
T ss_pred ccCCcchhhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCcccccee
Confidence 4456668899999988876 667899999999999999999999999999999987654 9999999999999999999
Q ss_pred EEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC-CCchhhhHHhhhcC
Q psy7848 684 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVDMMKY 736 (754)
Q Consensus 684 ~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s-~ge~~~hW~~ll~~ 736 (754)
+|.+.+.|. +..|.|+|||||..+.|||||...++++. .-+..+-||++++.
T Consensus 237 tf~Lkp~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~p~~GWyKlLsq 289 (683)
T KOG0696|consen 237 TFKLKPSDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKAPVDGWYKLLSQ 289 (683)
T ss_pred EEecccccc-cceeEEEEecccccccccccceecccHHHHhhcchhhHHHHhhh
Confidence 999988775 58999999999999999999999999887 34567789999975
|
|
| >cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-19 Score=166.94 Aligned_cols=114 Identities=26% Similarity=0.418 Sum_probs=97.8
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|.|++.| ..+.|.|+|++|+||+.++ .|.+||||+++|+|+.....+.||+++.++.||+|||+|.|. +...++
T Consensus 1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-v~~~~~ 76 (119)
T cd08685 1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-VNERDY 76 (119)
T ss_pred CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE-cChHHh
Confidence 789999998 6799999999999999998 889999999999997766678899999999999999999994 666655
Q ss_pred CcceEEEEEeeCCCCC-C-ccceeeeecCcccCCCCccceE
Q psy7848 552 SLQSLHILVLDDDKYG-H-DFLGEARFPLNRLRPHISRDLC 590 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g-~-dfLGev~I~L~~L~~~~~~~~~ 590 (754)
. ..|.|+|||++... + +|||++.|+|.++..+....-|
T Consensus 77 ~-~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~W 116 (119)
T cd08685 77 Q-KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGW 116 (119)
T ss_pred C-CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccce
Confidence 4 57899999999875 4 8999999999999755443333
|
This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho |
| >cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17 | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.2e-19 Score=165.90 Aligned_cols=120 Identities=30% Similarity=0.450 Sum_probs=107.8
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
|+|.|++.|+...+.|.|+|++|+||+.++ ..+.+||||+|++.++.. ...+|+++.+++||+|||.|.|. ++..+
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~--~~~~T~v~~~~~~P~wne~f~f~-i~~~~ 77 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDER--RSLQSKVKRKTQNPNFDETFVFQ-VSFKE 77 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCC--CceEeeeEcCCCCCccceEEEEE-cCHHH
Confidence 899999999999999999999999999998 688999999999987553 46789999999999999999995 77666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+....|.|.|||++..++ ++||++.|+|.++........|++|+
T Consensus 78 l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 78 LQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred hcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 666899999999999887 99999999999998887777887774
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat |
| >cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4 | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.8e-19 Score=174.38 Aligned_cols=123 Identities=30% Similarity=0.440 Sum_probs=107.1
Q ss_pred eeEEEEEEEEEC------------cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeec
Q psy7848 471 LGSIELTVTYDS------------TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 538 (754)
Q Consensus 471 ~G~I~~sl~Yd~------------~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~Wn 538 (754)
+|+|.|+|.|++ ..+.|.|+|++|+||+..+..+.+||||+|++.++.....+++|++++++.||+||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 599999999999 45899999999999999998899999999999886656678999999999999999
Q ss_pred eeEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 539 E~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
|+|.|..+...++....|.|.|||++.+++ +|||++.|++.++........|+.+
T Consensus 81 E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~ 136 (162)
T cd04020 81 HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDS 136 (162)
T ss_pred CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccC
Confidence 999996566666777889999999999987 9999999999998765544444443
|
All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-19 Score=165.03 Aligned_cols=108 Identities=20% Similarity=0.222 Sum_probs=89.2
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecC--C-CCcceeeeeeecCCCCCccceeEEEEeecC-ccCCCeEEEEEEEc
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP--D-LHKRKYKTGVKWKTLNPIFNEEFAIETKIT-ELSKQTLVITVWDK 704 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~--~-~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-dL~~~~L~ItV~D~ 704 (754)
+|+|.|++|+||+..+ .|.+||||+|+|.+ . ..+++++|+++.+|+||+|||+|.|.|... ++....|.|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 4899999999999887 58999999999863 1 122378999999999999999999999754 45668899999999
Q ss_pred cCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 705 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
+.+++|++||++.|++.+. . ++.....|++|..
T Consensus 80 d~~~~dd~IG~~~l~l~~~----------~--~~~~~~~w~~L~~ 112 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDI----------A--QAGSCACWLPLGR 112 (120)
T ss_pred cccCCCCEEEEEEEEHHHC----------c--CCCcEEEEEECcC
Confidence 9888899999999998853 2 3445677887754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.3e-19 Score=163.91 Aligned_cols=123 Identities=49% Similarity=0.908 Sum_probs=108.3
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|++.|++..+.|.|+|++|++|+..+..+.+||||++++.++.......+|++++++.||.|||.|.|..+...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 59999999999999999999999999999998899999999999875544568899999999999999999995455566
Q ss_pred cCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||++.+++++||++.|+|.+|..+..++++++|
T Consensus 81 ~~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 81 IQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred hCCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 6678999999999988449999999999999988777776543
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.2e-19 Score=165.17 Aligned_cols=107 Identities=24% Similarity=0.359 Sum_probs=90.8
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec---CccCCCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI---TELSKQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~---~dL~~~~L~ItV~D~d~ 706 (754)
+.|.|++|+||+.++.+|.+||||+|++ +..++||+++++++||+|||+|.|.+.. .++....|.|.|||++.
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l----~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~ 76 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL----GKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNL 76 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE----CCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccc
Confidence 5799999999999999999999999999 3458899999999999999999999865 23567899999999999
Q ss_pred CCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
+++|++||.+.|++.. +...++..+..||+|.++
T Consensus 77 ~~~d~~iG~~~i~l~~----------l~~~~~~~~~~W~~L~~~ 110 (126)
T cd08682 77 LGLDKFLGQVSIPLND----------LDEDKGRRRTRWFKLESK 110 (126)
T ss_pred cCCCceeEEEEEEHHH----------hhccCCCcccEEEECcCC
Confidence 9899999999999974 333445566777777654
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15 | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-19 Score=169.28 Aligned_cols=121 Identities=25% Similarity=0.405 Sum_probs=105.0
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|+|.|++..+.|.|+|++|+||+..+ .+.+||||+|+|.++.....+.+|++++++.||+|||.|.| .|+.++
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f-~i~~~~ 78 (137)
T cd08409 1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSF-KVTSRQ 78 (137)
T ss_pred CcEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEE-ECCHHH
Confidence 5999999999999999999999999999998 78899999999988654445779999999999999999999 488888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
+....|.|.|||++..++ ++||++.|.......+....+|..+
T Consensus 79 l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~ 122 (137)
T cd08409 79 LDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDM 122 (137)
T ss_pred hCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHH
Confidence 888999999999998887 9999999997766554444555443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id |
| >cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=165.80 Aligned_cols=109 Identities=30% Similarity=0.469 Sum_probs=99.1
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|++.|+...+.|.|+|++|+||+.+|..|.+||||+|++.++.....+.+|+++++++||.|||+|.|. +...+
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~-v~~~~ 79 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD-IPSEE 79 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE-CCHHH
Confidence 59999999999999999999999999999999999999999999876544457899999999999999999995 66666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
+....|.|.|||+|.+++ ++||++.|++..
T Consensus 80 ~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~ 110 (136)
T cd08404 80 LEDISVEFLVLDSDRVTKNEVIGRLVLGPKA 110 (136)
T ss_pred hCCCEEEEEEEECCCCCCCccEEEEEECCcC
Confidence 667889999999999988 999999999997
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s |
| >cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16 | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=164.70 Aligned_cols=110 Identities=22% Similarity=0.323 Sum_probs=99.9
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
|+|.|+|.|+...+.|.|+|++|+||+.++..|.+||||+++++|+.. ...+.+|++++++.||+|||+|.|. |+.++
T Consensus 2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~-i~~~~ 80 (138)
T cd08408 2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ-VALFQ 80 (138)
T ss_pred CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-CCHHH
Confidence 789999999999999999999999999999999999999999998543 2356799999999999999999995 88888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccC
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~ 582 (754)
+...+|.|.|||++.+++ ++||++.|++...-
T Consensus 81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG 113 (138)
T ss_pred hCccEEEEEEEECCCCCCCcEEEEEEECCcCCC
Confidence 888999999999999888 99999999988543
|
Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle |
| >cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7 | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-18 Score=165.34 Aligned_cols=110 Identities=32% Similarity=0.513 Sum_probs=98.9
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|+|.|++..+.|.|+|++|+||+.++..+.+||||+|++.+........+|+++.++.||+|||+|.|. ++.++
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~-i~~~~ 79 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN-IPLER 79 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe-CCHHH
Confidence 59999999999999999999999999999998999999999999765444457899999999999999999995 66666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
+....|.|+|||++.+++ ++||++.|++.+.
T Consensus 80 ~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~ 111 (136)
T cd08405 80 LRETTLIITVMDKDRLSRNDLIGKIYLGWKSG 111 (136)
T ss_pred hCCCEEEEEEEECCCCCCCcEeEEEEECCccC
Confidence 666789999999999987 9999999999876
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=163.57 Aligned_cols=109 Identities=36% Similarity=0.485 Sum_probs=98.2
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCC---cceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH---KRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~---k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
.|+|.|++.|.+..+.|.|.|++|++|+.++.+|.+||||+|++.+... ..++||+++++|+||+|||+|.|.+...
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~ 81 (133)
T cd04009 2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE 81 (133)
T ss_pred ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence 6999999999999999999999999999999999999999999976542 3489999999999999999999998653
Q ss_pred c--cCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 691 E--LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 691 d--L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
+ +....|.|+|||++.++++++||.+.|++..
T Consensus 82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~ 115 (133)
T cd04009 82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLND 115 (133)
T ss_pred hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHH
Confidence 2 3467999999999999999999999999875
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10 | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-18 Score=162.44 Aligned_cols=108 Identities=33% Similarity=0.538 Sum_probs=97.3
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|.|++.|.+..+.|.|+|++|++|+.++..+.+||||+|++.+.+......+|+++.+++||+|||+|.|. +..+.+
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~~ 79 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD-VPPENV 79 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-CCHHHh
Confidence 8999999999999999999999999999999999999999999865544467899999999999999999994 666666
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
....|.|+|||++.++. +|||++.|++..
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~IG~~~l~~~~ 109 (134)
T cd08403 80 DNVSLIIAVVDYDRVGHNELIGVCRVGPNA 109 (134)
T ss_pred CCCEEEEEEEECCCCCCCceeEEEEECCCC
Confidence 66789999999999987 999999999873
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind |
| >cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1 | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.4e-18 Score=162.31 Aligned_cols=110 Identities=33% Similarity=0.498 Sum_probs=99.1
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|++.|.+..+.|.|+|++|++|+.++..+.+||||+|++.+........+|+++++++||+|||+|.|. ++..+
T Consensus 1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-i~~~~ 79 (136)
T cd08402 1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE-VPFEQ 79 (136)
T ss_pred CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-CCHHH
Confidence 59999999999999999999999999999999999999999999865544467889999999999999999995 66666
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
+....|.|+|||++.++. +|||++.|++...
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~ 111 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNAT 111 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCccC
Confidence 766789999999999987 9999999999864
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: |
| >cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.8e-18 Score=157.53 Aligned_cols=113 Identities=23% Similarity=0.290 Sum_probs=93.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeC--CCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP--LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp--~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.|+|+|++|+||+..+ .|.+||||+|+|.+ ......+++|+++.+|+||+|||+|.|.......+....|+|.|||+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~ 79 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY 79 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence 3899999999999987 49999999999953 11233578999999999999999999964334456678899999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCC
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPV 599 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l 599 (754)
|..+. ++||++.|+|.++........|++|....++
T Consensus 80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 98876 9999999999999988888888888764433
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-18 Score=160.66 Aligned_cols=107 Identities=33% Similarity=0.532 Sum_probs=97.3
Q ss_pred EEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccC
Q psy7848 473 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS 552 (754)
Q Consensus 473 ~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~ 552 (754)
+|+|+|.|+...+.|.|+|++|+||+.+|..+.+||||+|++.++.......+|+++.+++||+|||+|.|. +...++.
T Consensus 1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-~~~~~l~ 79 (133)
T cd08384 1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD-IKHSDLA 79 (133)
T ss_pred CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE-CCHHHhC
Confidence 489999999999999999999999999998899999999999886555567899999999999999999994 6666677
Q ss_pred cceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 553 LQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 553 ~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
...|.|.|||+|..+. ++||++.|++..
T Consensus 80 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~ 108 (133)
T cd08384 80 KKTLEITVWDKDIGKSNDYIGGLQLGINA 108 (133)
T ss_pred CCEEEEEEEeCCCCCCccEEEEEEEecCC
Confidence 7899999999999887 999999999985
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.4e-18 Score=164.34 Aligned_cols=94 Identities=29% Similarity=0.465 Sum_probs=81.9
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEee-------------cCccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK-------------ITELSK 694 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~-------------~~dL~~ 694 (754)
+|.|.|++|+||++ .+|.+||||+|++.+...+ .++||+++++|+||+|||+|.|.+. ..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999988 6789999999999875444 3889999999999999999999984 335556
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCCCC
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNSKG 724 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s~g 724 (754)
..|.|.|||++.++.|+|||++.|++....
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~ 108 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLD 108 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEeccccc
Confidence 789999999999889999999999998643
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.3e-18 Score=158.77 Aligned_cols=115 Identities=32% Similarity=0.466 Sum_probs=100.3
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEE-eecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~-V~~~d 691 (754)
.|+|.++|.|.+..+.|.|.|++|++|+..+..+.+||||++++.++..+ .+++|+++++++||+|||+|.|. +...+
T Consensus 1 ~G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~ 80 (123)
T cd04035 1 LGTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEED 80 (123)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHH
Confidence 49999999999999999999999999999998899999999999766543 48999999999999999999996 54456
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhh
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRH 729 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~h 729 (754)
+....|.|+|||++.+ .+++||.+.+++........+
T Consensus 81 ~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~ 117 (123)
T cd04035 81 IQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTK 117 (123)
T ss_pred hCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcce
Confidence 6678999999999988 899999999999875443333
|
Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-17 Score=192.77 Aligned_cols=232 Identities=31% Similarity=0.435 Sum_probs=169.7
Q ss_pred EECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEE
Q psy7848 480 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 559 (754)
Q Consensus 480 Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~s 559 (754)
|+..-|.++|+|..|.+|......+.+|||+++.+. +..++||-....++||+||+......++. .+.|.+.
T Consensus 706 ~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n----~~~k~rti~~~~~~npiw~~i~Yv~v~sk----~~r~~l~ 777 (1227)
T COG5038 706 YDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN----NLVKYRTIYGSSTLNPIWNEILYVPVTSK----NQRLTLE 777 (1227)
T ss_pred ecCccceEEEEeehhhcccccccCcccccceEEEec----ceeEEEEecccCccccceeeeEEEEecCC----ccEEeee
Confidence 566669999999999999977788999999999996 35788999999999999999886543332 2668899
Q ss_pred EeeCCCCCC-ccceeeeecCcccCCCCccce---E---------eec---------------cc---CCCC---------
Q psy7848 560 VLDDDKYGH-DFLGEARFPLNRLRPHISRDL---C---------LNL---------------CK---HYPV--------- 599 (754)
Q Consensus 560 V~D~d~~g~-dfLGev~I~L~~L~~~~~~~~---~---------~~L---------------~~---~~~l--------- 599 (754)
.+|++..++ .+||++.|++.++........ . +.+ .. .+.+
T Consensus 778 ~~~~~~sgddr~lg~~~i~vsn~~~k~~~s~~~~~i~g~~~t~~l~~~~~~~~~tit~~~~f~p~~i~~s~ee~~~~~k~ 857 (1227)
T COG5038 778 CMDYEESGDDRNLGEVNINVSNVSKKDEDSALMETIDGAEETGKLSLTGKKVKGTITYKCRFYPAVIVLSLEEVRYVDKV 857 (1227)
T ss_pred eecchhccccceeceeeeeeeeeeecCCCcceEEeecCcccccccccccCCcceeEEEEEEEEeecccCChHHhcchhhh
Confidence 999999998 999999999988755111000 0 000 00 0000
Q ss_pred --------------Cccccccc-c---------------c-------------cccccc---------------------
Q psy7848 600 --------------PREEEVWG-E---------------E-------------ECWQHG--------------------- 615 (754)
Q Consensus 600 --------------~~~~~~~~-~---------------~-------------~~~~~G--------------------- 615 (754)
+.+ ..+. + + -....|
T Consensus 858 ~~e~~~~~~~~~~l~ek-~~~~~D~~~~~~e~~~v~~~~d~~~~k~k~~lne~lq~~sgv~~i~i~~g~l~~~~~~l~~f 936 (1227)
T COG5038 858 SSEKRKSEKRKSALDEK-TISLVDKEDSVEESIEVEELTDMYSLKPKLDLNEALQYKSGVLGIQILSGELPDPGQYLQIF 936 (1227)
T ss_pred hhHHHHhhhhhcccCcc-ccchhccccchhcceeeccccchhhcchhhhhhhhhcccCCceEEEEEEeecCCcceEEEEE
Confidence 000 0000 0 0 000001
Q ss_pred -------------------------------------------------------------------------------e
Q psy7848 616 -------------------------------------------------------------------------------K 616 (754)
Q Consensus 616 -------------------------------------------------------------------------------e 616 (754)
.
T Consensus 937 ~Dd~~~~~i~s~~~~t~~~~~~~~g~~~ireL~~s~~tfrv~K~a~~~dk~v~e~t~~t~~lvs~~~~kp~~ln~~g~~~ 1016 (1227)
T COG5038 937 FDDASHPQIVSSKAPTRGERNGESGDTFIRELEYSETTFRVTKNAKKSDKVVCEVTLPTLDLVSNAYEKPSSLNFPGSAK 1016 (1227)
T ss_pred ecCCCCceeeccCCcccccccchhhhhhhhhhccceEEEEeccCCcccCceeeecccchhHHHHHhhCCCcEEecCCCce
Confidence 1
Q ss_pred eEEeeecccc------------ccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEE
Q psy7848 617 IFLTLCFSTK------------KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 684 (754)
Q Consensus 617 L~VsL~y~p~------------~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~ 684 (754)
+.+.+.|.|- .|.|.|.+..|.||++.|.+|++||||++.+. +++.+||.++++|+||+|||.|.
T Consensus 1017 ~~v~~~~tPv~~~l~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln---~k~vyktkv~KktlNPvwNEe~~ 1093 (1227)
T COG5038 1017 VLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLN---EKSVYKTKVVKKTLNPVWNEEFT 1093 (1227)
T ss_pred EEEEEEEeecccccCcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEec---ceecccccchhccCCCCccccce
Confidence 1122222221 28899999999999999999999999999994 34499999999999999999999
Q ss_pred EEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCc
Q psy7848 685 IETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGD 725 (754)
Q Consensus 685 F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge 725 (754)
.+|... ....|.|.|+|||...+|+.||.+.|+|.....
T Consensus 1094 i~v~~r--~~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~ 1132 (1227)
T COG5038 1094 IEVLNR--VKDVLTINVNDWDSGEKNDLLGTAEIDLSKLEP 1132 (1227)
T ss_pred Eeeecc--ccceEEEEEeecccCCCccccccccccHhhcCc
Confidence 998643 468899999999999999999999999987443
|
|
| >cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.2e-17 Score=159.36 Aligned_cols=109 Identities=29% Similarity=0.395 Sum_probs=96.6
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|.|+|.|.+..+.|.|+|++|+||+.+|..|.+||||+|++.++.......+|+++++|+||+|||+|.|. ++..++
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~-i~~~~l 79 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK-VPQEEL 79 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-CCHHHh
Confidence 8999999999999999999999999999999899999999999765444456899999999999999999995 776777
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
....|.|.|||+|..++ ++||++.|.....
T Consensus 80 ~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~ 110 (135)
T cd08410 80 ENVSLVFTVYGHNVKSSNDFIGRIVIGQYSS 110 (135)
T ss_pred CCCEEEEEEEeCCCCCCCcEEEEEEEcCccC
Confidence 77789999999999887 9999998766443
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta- |
| >cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.8e-17 Score=157.70 Aligned_cols=113 Identities=32% Similarity=0.471 Sum_probs=98.7
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC--CceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~--~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
.+|+|.|++.|+...+.|.|+|++|++|+.++..+.+||||+|++.+... ....++|+++.+|+||+|||+|.|. +.
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~-i~ 79 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFN-VP 79 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEE-ec
Confidence 37999999999999999999999999999999889999999999986442 2468899999999999999999995 44
Q ss_pred cc--ccCcceEEEEEeeCCCCCC-ccceeeeecCcccCC
Q psy7848 548 ET--DLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 548 ~~--el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~ 583 (754)
.. .+....|.|.|||++.+++ +|||++.|+|.+|..
T Consensus 80 ~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 80 PEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred hhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 32 2345789999999999986 999999999998864
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.9e-18 Score=154.55 Aligned_cols=106 Identities=28% Similarity=0.396 Sum_probs=91.5
Q ss_pred eeeccccccccccCCC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCcc-ceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 630 LIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~w-NEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|++|+||+.++. +|.+||||++++. ..++||+++++++||.| ||+|.|.+...++....|.|+|||++.+
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~----~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~ 76 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG----STTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTY 76 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC----CeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCC
Confidence 6799999999999984 7899999999994 36899999999999999 9999999987777778999999999999
Q ss_pred CCCceeEEEEEecCCCCchhhhHHhhhc-CCCcceeeEEeecC
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWVDMMK-YPDHKHEGIHNLSI 749 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~~ll~-~P~~~ie~Wh~L~~ 749 (754)
++|++||++.+++.. ++. .++..+.+|++|..
T Consensus 77 ~~~~~iG~~~~~l~~----------l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 77 SANDAIGKVYIDLNP----------LLLKDSVSQISGWFPIYD 109 (110)
T ss_pred CCCCceEEEEEeHHH----------hcccCCccccCCeEEccc
Confidence 999999999999974 333 23555778888763
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.4e-17 Score=153.51 Aligned_cols=117 Identities=17% Similarity=0.285 Sum_probs=93.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecC-CCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~-TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|.|+|++|++|+..+ .|.+||||+|.+. ..+++|+++.+ +.||+|||+|.|. +... ...|.|+|||+
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg-----~~~~kT~v~~~~~~nP~WNe~F~f~-v~~~---~~~l~~~V~d~ 71 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVG-----HAVYETPTAYNGAKNPRWNKTIQCT-LPEG---VDSIYIEIFDE 71 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEEC-----CEEEEeEEccCCCCCCccCeEEEEE-ecCC---CcEEEEEEEeC
Confidence 68999999999988777 7899999999994 36789999876 7999999999995 4432 36799999999
Q ss_pred CCCCC-ccceeeeecCc-ccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 564 DKYGH-DFLGEARFPLN-RLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~-~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
|.++. ++||++.|+|. .+..++..+.|++|. +.. .....|+|+++|+|
T Consensus 72 d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~------~~~------~~~~~g~i~l~l~y 121 (121)
T cd04016 72 RAFTMDERIAWTHITIPESVFNGETLDDWYSLS------GKQ------GEDKEGMINLVFSY 121 (121)
T ss_pred CCCcCCceEEEEEEECchhccCCCCccccEeCc------Ccc------CCCCceEEEEEEeC
Confidence 99997 99999999996 566654544454443 221 13467999999988
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=154.25 Aligned_cols=120 Identities=23% Similarity=0.375 Sum_probs=95.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec---cccCcceEEEEEeeC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE---TDLSLQSLHILVLDD 563 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~---~el~~~~L~~sV~D~ 563 (754)
++|+|++|+||+.++..|.+||||+|.+.+ .+++|+++.+++||+|||+|.|. +.. +++....|.|.|||+
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~-----~~~kT~v~~~t~nP~Wne~f~F~-v~~~~~~~~~~~~l~~~v~d~ 74 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGK-----EKYSTSVKEKTTSPVWKEECSFE-LPGLLSGNGNRATLQLTVMHR 74 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEECC-----eeeeeeeecCCCCCEeCceEEEE-ecCcccCCCcCCEEEEEEEEc
Confidence 579999999999999999999999999953 67899999999999999999995 444 234568999999999
Q ss_pred CCCCC-ccceeeeecCcccC--CCCccceEeecccCCCCCccccccccccccccceeEEeee
Q psy7848 564 DKYGH-DFLGEARFPLNRLR--PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC 622 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~--~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~ 622 (754)
+.++. ++||++.|+|.++. .+.....|++| ..... ......|+|+|.++
T Consensus 75 ~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L------~~~~~----~~~~~~Gei~l~~~ 126 (126)
T cd08682 75 NLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKL------ESKPG----KDDKERGEIEVDIQ 126 (126)
T ss_pred cccCCCceeEEEEEEHHHhhccCCCcccEEEEC------cCCCC----CCccccceEEEEeC
Confidence 99886 99999999999987 33333444444 32211 12457899998874
|
Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member |
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=155.54 Aligned_cols=106 Identities=41% Similarity=0.706 Sum_probs=94.6
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|+|++.|.+ +.|.|.|++|+||+..+..+.+||||+|.+.+.... .+++|++++++.||.|||+|.|.+...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~- 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPAD- 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchh-
Confidence 599999999988 889999999999999988899999999999765443 4899999999999999999999986544
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
....|.|+|||++.++.+++||.+.+++..
T Consensus 78 ~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~ 107 (131)
T cd04026 78 KDRRLSIEVWDWDRTTRNDFMGSLSFGVSE 107 (131)
T ss_pred cCCEEEEEEEECCCCCCcceeEEEEEeHHH
Confidence 347899999999998899999999999875
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.7e-17 Score=155.53 Aligned_cols=119 Identities=28% Similarity=0.399 Sum_probs=102.3
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|+|++.|+...+.|.|+|++|+||+..+..+..||||++++.+........+|+++.++.||.|||+|.|. +....+
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~-i~~~~l 79 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD-VPAEQL 79 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-CCHHHh
Confidence 8999999999999999999999999999998899999999999875544457899999999999999999995 666666
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
....|.|.|||++.++. ++||++.|++.+ .+...+.|..+
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l 120 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEM 120 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHH
Confidence 67899999999999777 999999999998 33344444444
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin |
| >cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.9e-17 Score=153.89 Aligned_cols=107 Identities=13% Similarity=0.202 Sum_probs=95.4
Q ss_pred EEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCC-CCeeceeEEEeeeecccc
Q psy7848 473 SIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 473 ~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~Tl-NP~WnE~f~F~~I~~~el 551 (754)
+|.|+|.|.+..+.|.|+|++|+||++++..+..||||||+|.+.+....+.||+++++|+ ||+|||+|.|. |+.++.
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd-v~~~~~ 80 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP-VTQQEH 80 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-CCchhh
Confidence 7999999999999999999999999998767778999999999877666789999999996 69999999995 666554
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
...|.|+|||++..++ ++||++.+.....
T Consensus 81 -~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~ 110 (135)
T cd08692 81 -GIQFLIKLYSRSSVRRKHFLGQVWISSDSS 110 (135)
T ss_pred -eeEEEEEEEeCCCCcCCceEEEEEECCccC
Confidence 5899999999999888 9999999999764
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=149.58 Aligned_cols=120 Identities=30% Similarity=0.414 Sum_probs=101.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
+|.|+|++|++|+..|..+.+||||++.+.+ ...++|+++.++.||+|||.|.|. +. .+ ...|.|+|||++.
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~----~~~~kT~~~~~t~nP~Wne~f~f~-v~--~~-~~~l~~~v~D~d~ 72 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGG----KTVYKSKTIYKNLNPVWDEKFTLP-IE--DV-TQPLYIKVFDYDR 72 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEECC----EEEEEeeeccCCCCCccceeEEEE-ec--CC-CCeEEEEEEeCCC
Confidence 4899999999999999999999999999852 367899999999999999999995 43 22 3789999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
++. ++||++.|+|.++..+...+.|++|... ......|+|+|.+.|.|
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~------------~~~~~~G~l~l~~~~~~ 121 (121)
T cd04042 73 GLTDDFMGSAFVDLSTLELNKPTEVKLKLEDP------------NSDEDLGYISLVVTLTP 121 (121)
T ss_pred CCCCcceEEEEEEHHHcCCCCCeEEEEECCCC------------CCccCceEEEEEEEECC
Confidence 976 9999999999999988777788777531 01356899999999865
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.71 E-value=9.4e-17 Score=151.37 Aligned_cols=122 Identities=27% Similarity=0.350 Sum_probs=96.6
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|.|+|++|++|+..+..+.+||||+|++.+ .+++|+++.++.||+|||.|.|.......+....|.|.|||++.
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~-----~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~ 75 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDG-----QKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRR 75 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEECC-----EEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCC
Confidence 3899999999999999889999999999964 67899999999999999999996333344445789999999998
Q ss_pred CC-C-ccceeeeecCcccC-CCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 566 YG-H-DFLGEARFPLNRLR-PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 566 ~g-~-dfLGev~I~L~~L~-~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++ . +|||++.|++.++. .+.....|+.|+. ... ....+|+|.|.+.+
T Consensus 76 ~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~------~~~-----~~~~~G~l~l~~~~ 125 (127)
T cd04022 76 SGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEK------RGL-----FSRVRGEIGLKVYI 125 (127)
T ss_pred CcCCCCeeeEEEEcHHHcCCCCCccceEeEeee------CCC-----CCCccEEEEEEEEE
Confidence 85 5 99999999999987 3334444555542 110 12468999998876
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG1028|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-17 Score=183.49 Aligned_cols=123 Identities=35% Similarity=0.541 Sum_probs=110.1
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|.+++.|......|.|.|++|.||++++..|.+|||||++|+|+. +.+.+|+++++|+||+|||+|.|.|...
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk-~~k~kT~v~r~tlnP~fnEtf~f~v~~~ 228 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDK-KGKFKTRVHRKTLNPVFNETFRFEVPYE 228 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCC-CCcceeeeeecCcCCccccceEeecCHH
Confidence 467899999999999999999999999999999988899999999999986 5699999999999999999999999989
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCc--hhhhHHhhh
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGD--RLRHWVDMM 734 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge--~~~hW~~ll 734 (754)
++....|.++|||+|.|+.|++||.|.|++..... ....|+++.
T Consensus 229 ~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~ 274 (421)
T KOG1028|consen 229 ELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQ 274 (421)
T ss_pred HhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccc
Confidence 99999999999999999999999999999875322 223455444
|
|
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.4e-17 Score=147.54 Aligned_cols=102 Identities=29% Similarity=0.355 Sum_probs=89.1
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+..+.+|.+||||+|++. .+++||+++++|.||+|||.|.|.+.. .....|.|+|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~~l~v~v~d~~~--- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVG----KTTQKSKVKERTNNPVWEEGFTFLVRN--PENQELEIEVKDDKT--- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEEC----CEEEeCccccCCCCCcccceEEEEeCC--CCCCEEEEEEEECCC---
Confidence 78999999999999989999999999993 468899999999999999999999963 334689999999886
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
+++||.+.|++. +++..|+..+.+||.|.+.
T Consensus 73 ~~~iG~~~i~l~----------~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 73 GKSLGSLTLPLS----------ELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred CCccEEEEEEHH----------HhhccccceeeeeEecCCC
Confidence 789999999987 4566677778899999765
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip) | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.7e-17 Score=150.74 Aligned_cols=100 Identities=13% Similarity=0.282 Sum_probs=84.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecC-CCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kk-TlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|+|++|++|+..+ .|.+||||+|.+ +..+++|+++.+ ++||+|||+|.|.+... ...|.|+|||+|.
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l----g~~~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~ 73 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV----GHAVYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERA 73 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE----CCEEEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCC
Confidence 68999999999988777 789999999999 456789999765 89999999999998642 3679999999999
Q ss_pred CCCCceeEEEEEecCC---CCchhhhHHhhhc
Q psy7848 707 GKSNDYLGCLELCCNS---KGDRLRHWVDMMK 735 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s---~ge~~~hW~~ll~ 735 (754)
+++|++||.+.|++.. .|+..+.|++|..
T Consensus 74 ~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~ 105 (121)
T cd04016 74 FTMDERIAWTHITIPESVFNGETLDDWYSLSG 105 (121)
T ss_pred CcCCceEEEEEEECchhccCCCCccccEeCcC
Confidence 9999999999999953 4555677777654
|
Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian |
| >cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.3e-17 Score=152.09 Aligned_cols=91 Identities=26% Similarity=0.478 Sum_probs=80.2
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec-CccCCCeEEEEEEEccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-TELSKQTLVITVWDKDYG 707 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~-~dL~~~~L~ItV~D~d~~ 707 (754)
+|.|.|++|+||++.+.+|.+||||+|++. ..++||+++++++||+|||.|.|.+.. ..+....|.|+|||++.+
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~----~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~ 76 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD----GQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRS 76 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC----CEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence 489999999999999999999999999994 357899999999999999999999863 334467899999999988
Q ss_pred C-CCceeEEEEEecCCC
Q psy7848 708 K-SNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~-~ddfLG~v~L~l~s~ 723 (754)
+ .++|||++.|++...
T Consensus 77 ~~~d~~lG~v~i~l~~l 93 (127)
T cd04022 77 GRRRSFLGRVRISGTSF 93 (127)
T ss_pred cCCCCeeeEEEEcHHHc
Confidence 6 899999999999753
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.8e-17 Score=156.33 Aligned_cols=89 Identities=26% Similarity=0.331 Sum_probs=78.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecC-CCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kk-TlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
.|.|.|++|+||++++.+|.+||||+|++. ..+++|+++.+ |+||+|||+|.|.+. +.....|.|.|||++.+
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~----~~~~kTk~~~~~t~nP~WNE~F~f~v~--~~~~~~l~v~V~d~~~~ 74 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLG----NQVLRTRPSQTRNGNPSWNEELMFVAA--EPFEDHLILSVEDRVGP 74 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEEC----CEEeeeEeccCCCCCCcccCcEEEEec--CccCCeEEEEEEEecCC
Confidence 378999999999999999999999999994 46889998766 699999999999985 33457899999999998
Q ss_pred CCCceeEEEEEecCCC
Q psy7848 708 KSNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ 723 (754)
+.|++||.+.|++...
T Consensus 75 ~~dd~lG~v~i~L~~l 90 (150)
T cd04019 75 NKDEPLGRAVIPLNDI 90 (150)
T ss_pred CCCCeEEEEEEEHHHC
Confidence 8899999999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-17 Score=150.32 Aligned_cols=94 Identities=28% Similarity=0.440 Sum_probs=83.2
Q ss_pred cceeeccccccccccCCCC-CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCcc-CCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL-~~~~L~ItV~D~d 705 (754)
|.|.|.|++|+||+.++.. |.+||||+|++.+. ++..++|+++++|+||+|||+|.|.+...++ ....|.|+|||+|
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~-~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d 79 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKF-GKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSD 79 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccC-CCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCC
Confidence 5799999999999999988 99999999999654 3457899999999999999999999865554 3578999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy7848 706 YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s 722 (754)
.++.|++||.+.|++..
T Consensus 80 ~~~~dd~lG~~~i~l~~ 96 (111)
T cd04041 80 RFTADDRLGRVEIDLKE 96 (111)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 99999999999999874
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3) | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-16 Score=153.88 Aligned_cols=107 Identities=30% Similarity=0.375 Sum_probs=87.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeee------------eccccCc
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV------------SETDLSL 553 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I------------~~~el~~ 553 (754)
.|.|+|++|+||+. .+|.+||||+|++.++.....+.+|+++.+|+||+|||+|.|... +..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 38999999999998 578999999999987654456789999999999999999999631 3345556
Q ss_pred ceEEEEEeeCCCCCC-ccceeeeecCcccCCC-CccceEeecc
Q psy7848 554 QSLHILVLDDDKYGH-DFLGEARFPLNRLRPH-ISRDLCLNLC 594 (754)
Q Consensus 554 ~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~-~~~~~~~~L~ 594 (754)
..|.|.|||++.+++ +|||++.|+|..+... .....|++|.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~ 121 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQ 121 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecC
Confidence 789999999999877 9999999999998865 3344444443
|
RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain |
| >KOG1030|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-17 Score=155.82 Aligned_cols=97 Identities=33% Similarity=0.406 Sum_probs=88.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|-|.|.|++|.||...|..+.+||||.+.| +.++.||+++++++||+|||.|+|.|. |. ...|.++|||+|.+
T Consensus 6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~l----g~q~lkT~~v~~n~NPeWNe~ltf~v~--d~-~~~lkv~VyD~D~f 78 (168)
T KOG1030|consen 6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLEL----GNQKLKTRVVYKNLNPEWNEELTFTVK--DP-NTPLKVTVYDKDTF 78 (168)
T ss_pred eEEEEEEEeecCeeeeccccCCCCeEEEEE----CCeeeeeeeecCCCCCcccceEEEEec--CC-CceEEEEEEeCCCC
Confidence 778999999999999999899999999999 667999999999999999999999996 32 58999999999999
Q ss_pred CCCceeEEEEEecCCCCchhhhHH
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWV 731 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~ 731 (754)
++|||||.+.|++...-+....|+
T Consensus 79 s~dD~mG~A~I~l~p~~~~~~~~~ 102 (168)
T KOG1030|consen 79 SSDDFMGEATIPLKPLLEAQKMDY 102 (168)
T ss_pred CcccccceeeeccHHHHHHhhhhc
Confidence 999999999999998777677776
|
|
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=149.78 Aligned_cols=99 Identities=16% Similarity=0.214 Sum_probs=83.5
Q ss_pred ceeeccccccc---cccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 629 ALIVNLIKCTN---LIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 629 ~L~V~V~~A~n---L~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
.|.|.|++|+| |.++|..|.+||||+|.+ +.++.||+++++++||+|||+|.|.+.. . ...|+|+|||++
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~----g~~~~rTk~~~~~~nP~WnE~f~f~v~~--~-~~~l~v~V~d~d 73 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKY----GPKWVRTRTVEDSSNPRWNEQYTWPVYD--P-CTVLTVGVFDNS 73 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEE----CCEEeEcCcccCCCCCcceeEEEEEecC--C-CCEEEEEEEECC
Confidence 48899999999 899999999999999999 4558899999999999999999999853 2 358999999999
Q ss_pred CCC------CCceeEEEEEecCCC--CchhhhHHhhh
Q psy7848 706 YGK------SNDYLGCLELCCNSK--GDRLRHWVDMM 734 (754)
Q Consensus 706 ~~~------~ddfLG~v~L~l~s~--ge~~~hW~~ll 734 (754)
.++ .|++||.+.|++.+. +....+||+|.
T Consensus 74 ~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 74 QSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 873 899999999998863 33445566555
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.9e-16 Score=146.59 Aligned_cols=99 Identities=36% Similarity=0.568 Sum_probs=83.7
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|+|.|++|+||+.++.+|.+||||++++ +..++||+++++|+||.|||+|.|.+.. .....|.|+|||++.++.
T Consensus 2 ~~V~v~~a~~L~~~~~~~~~dPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~~l~v~v~d~~~~~~ 75 (116)
T cd08376 2 VTIVLVEGKNLPPMDDNGLSDPYVKFRL----GNEKYKSKVCSKTLNPQWLEQFDLHLFD--DQSQILEIEVWDKDTGKK 75 (116)
T ss_pred EEEEEEEEECCCCCCCCCCCCcEEEEEE----CCEeEecccccCCCCCceeEEEEEEecC--CCCCEEEEEEEECCCCCC
Confidence 6899999999999999999999999999 3457899999999999999999999863 346899999999999999
Q ss_pred CceeEEEEEecCCC--CchhhhHHhhh
Q psy7848 710 NDYLGCLELCCNSK--GDRLRHWVDMM 734 (754)
Q Consensus 710 ddfLG~v~L~l~s~--ge~~~hW~~ll 734 (754)
|++||.+.+++... ++....|++|.
T Consensus 76 ~~~iG~~~~~l~~l~~~~~~~~w~~L~ 102 (116)
T cd08376 76 DEFIGRCEIDLSALPREQTHSLELELE 102 (116)
T ss_pred CCeEEEEEEeHHHCCCCCceEEEEEcc
Confidence 99999999998753 23344454443
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-16 Score=148.65 Aligned_cols=89 Identities=30% Similarity=0.535 Sum_probs=79.7
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
+|.|.|++|+||..++.+|.+||||+|++ +..+++|+++++|+||.|||+|.|.+... ....|.|+|||++.++
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~----~~~~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~~~v~d~~~~~ 74 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY----NGQTLETSVVKKSCYPRWNEVFEFELMEG--ADSPLSVEVWDWDLVS 74 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE----CCEEEeceeecCCCCCccCcEEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 58999999999999999999999999998 33578999999999999999999998643 2578999999999999
Q ss_pred CCceeEEEEEecCCC
Q psy7848 709 SNDYLGCLELCCNSK 723 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~ 723 (754)
.+++||.+.+++...
T Consensus 75 ~~~~iG~~~~~l~~l 89 (123)
T cd04025 75 KNDFLGKVVFSIQTL 89 (123)
T ss_pred CCcEeEEEEEEHHHc
Confidence 999999999998753
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-16 Score=146.68 Aligned_cols=117 Identities=27% Similarity=0.426 Sum_probs=94.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|.|+|++|+||+..+..+.+||||+|.+.+ ...+|+++. +++||+|||.|.|. +... ....|.|+|||+
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~-v~~~--~~~~l~i~v~d~ 72 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGG-----VTKKTKTDFRGGQHPEWDEELRFE-ITED--KKPILKVAVFDD 72 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEECC-----CccccccccCCCCCCccCceEEEE-ecCC--CCCEEEEEEEeC
Confidence 57999999999999999899999999999964 567888875 47999999999994 4432 347899999999
Q ss_pred CCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 564 DKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 564 d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+..++++||++.|++.++....... .|+++... ....|+|++.|.|
T Consensus 73 ~~~~~~~iG~~~~~l~~~~~~~~~~------~w~~L~~~--------~~~~G~i~l~l~f 118 (118)
T cd08681 73 DKRKPDLIGDTEVDLSPALKEGEFD------DWYELTLK--------GRYAGEVYLELTF 118 (118)
T ss_pred CCCCCcceEEEEEecHHHhhcCCCC------CcEEeccC--------CcEeeEEEEEEEC
Confidence 9877799999999999986654433 44444321 3578999999987
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.2e-16 Score=144.26 Aligned_cols=114 Identities=29% Similarity=0.493 Sum_probs=96.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|+|+|++|+||+..+..+.+||||++++. ..+.+|+++.+|+||.|||.|.|. +.. .....|.|.|||++.
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~-----~~~~kT~v~~~t~nP~Wne~f~f~-~~~--~~~~~l~v~v~d~~~ 72 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLG-----NEKYKSKVCSKTLNPQWLEQFDLH-LFD--DQSQILEIEVWDKDT 72 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEEC-----CEeEecccccCCCCCceeEEEEEE-ecC--CCCCEEEEEEEECCC
Confidence 378999999999999988999999999994 367899999999999999999995 332 235789999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
++. ++||++.++|.++..+.....|++|.. ..|+|++.+.|.
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-----------------~~G~~~~~~~~~ 115 (116)
T cd08376 73 GKKDEFIGRCEIDLSALPREQTHSLELELED-----------------GEGSLLLLLTLT 115 (116)
T ss_pred CCCCCeEEEEEEeHHHCCCCCceEEEEEccC-----------------CCcEEEEEEEec
Confidence 877 999999999999988777777777742 259998888763
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.5e-16 Score=154.63 Aligned_cols=89 Identities=25% Similarity=0.377 Sum_probs=77.6
Q ss_pred ceeeccccccccccCCCCC--------------CCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNG--------------FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 694 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G--------------~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~ 694 (754)
.|.|+|++|++|+.+|.++ .+||||+|.+. .++.||+++++++||+|||+|.|.+...++ .
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~----g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~-~ 75 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFA----GQKVKTSVKKNSYNPEWNEQIVFPEMFPPL-C 75 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEEC----CEeeecceEcCCCCCCcceEEEEEeeCCCc-C
Confidence 4789999999999998654 68999999983 346799999999999999999999754333 4
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
..|.|+|||+|..++|++||.+.|++..
T Consensus 76 ~~l~~~v~D~d~~~~dd~iG~~~l~l~~ 103 (151)
T cd04018 76 ERIKIQIRDWDRVGNDDVIGTHFIDLSK 103 (151)
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence 6899999999999999999999999875
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.4e-16 Score=148.35 Aligned_cols=129 Identities=27% Similarity=0.435 Sum_probs=101.9
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC--CCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT--KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~--~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.|.|+|++|+||+..+..+.+||||+|++.+.. ......+|+++.+|.||+|||+|.|. +... ...|.|.|||+
T Consensus 1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~ 76 (133)
T cd04033 1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR-VNPR---EHRLLFEVFDE 76 (133)
T ss_pred CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEE-EcCC---CCEEEEEEEEC
Confidence 388999999999999988999999999997531 12236799999999999999999995 4332 36799999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+.++. ++||++.|++.++..............||+|.+... .....|+|++++.|
T Consensus 77 ~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~G~l~~~~~~ 132 (133)
T cd04033 77 NRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSS-----KSRVKGHLRLYMAY 132 (133)
T ss_pred CCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCC-----CCcceeEEEEEEee
Confidence 99987 999999999999987644433334556777764321 13569999999987
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-16 Score=150.20 Aligned_cols=114 Identities=27% Similarity=0.371 Sum_probs=93.3
Q ss_pred cccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 624 STKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 624 ~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
....|.|.|.|++|++|+.++.+|.+||||++++ +..+++|+++++++||.|||+|.|.+. ++....|.|+|||
T Consensus 11 ~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~----~~~~~kT~vi~~t~nP~Wne~f~f~v~--~~~~~~l~i~V~D 84 (136)
T cd08375 11 ASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM----GSQEHKTKVVSDTLNPKWNSSMQFFVK--DLEQDVLCITVFD 84 (136)
T ss_pred CCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE----CCEeeeccccCCCCCCccCceEEEEec--CccCCEEEEEEEE
Confidence 3445899999999999999999999999999999 345899999999999999999999985 4556799999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
++.++.|++||.+.|++...-.+.. .....++.|+.|...
T Consensus 85 ~d~~~~d~~lG~~~i~l~~l~~~~~-------~~~~~~~~~~~~~~~ 124 (136)
T cd08375 85 RDFFSPDDFLGRTEIRVADILKETK-------ESKGPITKRLLLHEV 124 (136)
T ss_pred CCCCCCCCeeEEEEEEHHHhccccc-------cCCCcEEEEeccccc
Confidence 9999999999999999875322111 233456677777543
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-16 Score=146.59 Aligned_cols=104 Identities=20% Similarity=0.283 Sum_probs=85.7
Q ss_pred eeeccccccccccCC-CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 630 LIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 630 L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
|.|.|++|+||++++ .+|.+||||+|++. +...+||+++++|+||+|||+|.|.|... ...|.|.|||++.++
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~---~~~~~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~~ 75 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD---QEEVFRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVLR 75 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC---CccEEEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCCC
Confidence 678999999999974 46889999999993 22478999999999999999999999632 368999999999999
Q ss_pred CCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 709 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
+|++||.+.|+++... .+...+.|+.|++..
T Consensus 76 ~~~~iG~~~i~l~~l~------------~~~~~~~w~~L~~~~ 106 (121)
T cd08401 76 RDSVIGKVAIKKEDLH------------KYYGKDTWFPLQPVD 106 (121)
T ss_pred CCceEEEEEEEHHHcc------------CCCCcEeeEEEEccC
Confidence 9999999999987532 133456777777643
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.67 E-value=4.3e-16 Score=145.12 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=95.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|++|+..+..+.+||||++++.+.. ....+|+++.++.||+|||+|.|. +... ....|.|.|||+|.+
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~vv~~t~nP~Wne~f~f~-i~~~--~~~~l~v~v~d~d~~ 76 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTAS--DEKKRTKTIKNSINPVWNETFEFR-IQSQ--VKNVLELTVMDEDYV 76 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCC--CccCccceecCCCCCccceEEEEE-eCcc--cCCEEEEEEEECCCC
Confidence 78999999999999988999999999996432 257799999999999999999994 4433 246799999999998
Q ss_pred CCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 567 GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++++||++.+++.++..+.....|++|.. ...|+|.+.+.+
T Consensus 77 ~~~~iG~~~~~l~~l~~g~~~~~~~~L~~----------------~~~g~l~~~~~~ 117 (119)
T cd04036 77 MDDHLGTVLFDVSKLKLGEKVRVTFSLNP----------------QGKEELEVEFLL 117 (119)
T ss_pred CCcccEEEEEEHHHCCCCCcEEEEEECCC----------------CCCceEEEEEEe
Confidence 44999999999999988777777777642 357888877754
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-16 Score=147.86 Aligned_cols=103 Identities=27% Similarity=0.458 Sum_probs=87.1
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
+|.|.|++|+||+.++.+|.+||||++++. ++..++|+++++++||+|||+|.|.+. ++ ...|.|+|||++.++
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~---~~~~~kT~~~~~t~nP~Wne~f~f~v~--~~-~~~l~~~v~D~d~~~ 74 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYG---GKTVYKSKTIYKNLNPVWDEKFTLPIE--DV-TQPLYIKVFDYDRGL 74 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEEC---CEEEEEeeeccCCCCCccceeEEEEec--CC-CCeEEEEEEeCCCCC
Confidence 488999999999999999999999999983 335889999999999999999999985 33 478999999999999
Q ss_pred CCceeEEEEEecCC--CCchhhhHHhhhcCC
Q psy7848 709 SNDYLGCLELCCNS--KGDRLRHWVDMMKYP 737 (754)
Q Consensus 709 ~ddfLG~v~L~l~s--~ge~~~hW~~ll~~P 737 (754)
+|++||.+.|++.. .+...+.|++|....
T Consensus 75 ~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~ 105 (121)
T cd04042 75 TDDFMGSAFVDLSTLELNKPTEVKLKLEDPN 105 (121)
T ss_pred CCcceEEEEEEHHHcCCCCCeEEEEECCCCC
Confidence 99999999999986 334555566665433
|
MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein |
| >KOG3799|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-17 Score=147.51 Aligned_cols=116 Identities=22% Similarity=0.512 Sum_probs=96.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhc-------cCCC-ccccccccccccCCCcccccccc
Q psy7848 84 KPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNV-------TGGA-AAAHACALCGDKFSPIFDRLGLF 155 (754)
Q Consensus 84 ~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~-------~~~~-~~~~~C~~C~~~~g~~~~~~~~~ 155 (754)
+..|||++|+-.|.+|+.|+..-+..+-+-.++-++++-++.... +..| ..+..|.+|+++.+ +
T Consensus 6 d~sh~T~he~~qik~vf~rqk~ee~kq~ei~~~~~~e~~el~~Qi~erkEqqKKaGv~ddatC~IC~KTKF--------A 77 (169)
T KOG3799|consen 6 DLSHLTPHERMQIKEVFIRQKIEEHKQFEIYKEQVKEMGELSQQIQERKEQQKKAGVGDDATCGICHKTKF--------A 77 (169)
T ss_pred chhhcCccchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcCcchhhhhhccc--------c
Confidence 456999999999999999999888888887777777664433222 1111 24699999999998 9
Q ss_pred CCCCccccccccccccccccccccCCCCCCceeeccchhhhhhhhhccccccc
Q psy7848 156 GAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFK 208 (754)
Q Consensus 156 ~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~ 208 (754)
++.|+.|.+|+.+.|.+||.... ...+..+|+|++|.+..++..+||+|||+
T Consensus 78 DG~GH~C~YCq~r~CARCGGrv~-lrsNKv~wvcnlc~k~q~il~ksg~wf~~ 129 (169)
T KOG3799|consen 78 DGCGHNCSYCQTRFCARCGGRVS-LRSNKVMWVCNLCRKQQEILTKSGAWFYN 129 (169)
T ss_pred cccCcccchhhhhHHHhcCCeee-eccCceEEeccCCcHHHHHHHhcchHHHh
Confidence 99999999999999999999886 23356799999999999999999999998
|
|
| >cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.7e-16 Score=145.74 Aligned_cols=118 Identities=35% Similarity=0.496 Sum_probs=98.8
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|++.|+. +.|.|+|++|+||+..+..+.+||||+|.+.+.......++|+++.++.||.|||+|.|+ +...+
T Consensus 1 ~g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~-~~~~~ 77 (131)
T cd04026 1 RGRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFD-LKPAD 77 (131)
T ss_pred CcEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEe-CCchh
Confidence 599999999975 999999999999999988899999999999865444578899999999999999999995 43333
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
....|.|.|||++..+. ++||++.++|.++... ....|+.|
T Consensus 78 -~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L 119 (131)
T cd04026 78 -KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKL 119 (131)
T ss_pred -cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEEC
Confidence 24789999999998877 9999999999998754 33334444
|
A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd |
| >cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3 | Back alignment and domain information |
|---|
Probab=99.66 E-value=9e-16 Score=143.88 Aligned_cols=118 Identities=24% Similarity=0.384 Sum_probs=94.8
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 487 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 487 L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
|.|+|++|+||+.++ ..|.+||||+|.+. .....+|+++.+|+||+|||+|.|. +... ...|.|.|||++.
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~----~~~~~kT~v~~kt~~P~WnE~F~f~-v~~~---~~~l~~~v~d~~~ 73 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLD----QEEVFRTKTVEKSLCPFFGEDFYFE-IPRT---FRHLSFYIYDRDV 73 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEEC----CccEEEeeEEECCCCCccCCeEEEE-cCCC---CCEEEEEEEECCC
Confidence 789999999999974 46789999999994 2246899999999999999999995 5432 3689999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++. ++||.+.++|.++..+...+.|++|... . ......|+|++++.|
T Consensus 74 ~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~-----~~~~~~G~i~l~~~~ 121 (121)
T cd08401 74 LRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPV------D-----ADSEVQGKVHLELRL 121 (121)
T ss_pred CCCCceEEEEEEEHHHccCCCCcEeeEEEEcc------C-----CCCcccEEEEEEEEC
Confidence 987 9999999999999876666666666421 0 012358999998865
|
RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.66 E-value=4e-16 Score=143.42 Aligned_cols=90 Identities=29% Similarity=0.416 Sum_probs=78.6
Q ss_pred cceeeccccccccccCCCC----CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSN----GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~----G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
|.|.|+|++|+||++.+.. +.+||||+|++ ++.++||+++++++||+|||+|.|.+...+. ...|.|.|||
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~----~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~-~~~L~~~V~D 75 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF----GRRVFRTSWRRHTLNPVFNERLAFEVYPHEK-NFDIQFKVLD 75 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE----CCEeEeeeeecCCCCCcccceEEEEEeCccC-CCEEEEEEEE
Confidence 5789999999999988642 35899999999 4457899999999999999999999875443 4689999999
Q ss_pred ccCCCCCceeEEEEEecCC
Q psy7848 704 KDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s 722 (754)
++.+++|++||.+.|++..
T Consensus 76 ~d~~~~dd~IG~~~l~L~~ 94 (108)
T cd04039 76 KDKFSFNDYVATGSLSVQE 94 (108)
T ss_pred CCCCCCCcceEEEEEEHHH
Confidence 9999999999999999875
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd08375 C2_Intersectin C2 domain present in Intersectin | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.5e-16 Score=147.40 Aligned_cols=122 Identities=25% Similarity=0.449 Sum_probs=95.8
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.-|.|.|+|++|++|+..|..|.+||||++++. ...++|+++.++.||.|||+|.|. +. ++....|.|.|||
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~-----~~~~kT~vi~~t~nP~Wne~f~f~-v~--~~~~~~l~i~V~D 84 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMG-----SQEHKTKVVSDTLNPKWNSSMQFF-VK--DLEQDVLCITVFD 84 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEEC-----CEeeeccccCCCCCCccCceEEEE-ec--CccCCEEEEEEEE
Confidence 347899999999999999999999999999984 367899999999999999999994 33 3345789999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+|.++. ++||++.|+|.++...... ....+..|..+ .....|+|++.+.+
T Consensus 85 ~d~~~~d~~lG~~~i~l~~l~~~~~~-~~~~~~~~~~~----------~~~~~g~i~l~~~~ 135 (136)
T cd08375 85 RDFFSPDDFLGRTEIRVADILKETKE-SKGPITKRLLL----------HEVPTGEVVVKLDL 135 (136)
T ss_pred CCCCCCCCeeEEEEEEHHHhcccccc-CCCcEEEEecc----------ccccceeEEEEEEe
Confidence 999887 9999999999998752111 11112222222 14678999998876
|
A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro |
| >cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-16 Score=146.39 Aligned_cols=102 Identities=25% Similarity=0.354 Sum_probs=85.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|.|++|+||+..+..|.+||||+|++. ..+++|+++. .++||+|||.|.|.+... ....|.|+|||++.
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~----~~~~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~ 74 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG----GVTKKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK 74 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC----CCccccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC
Confidence 5799999999999999999999999999994 3577888865 579999999999999743 35789999999998
Q ss_pred CCCCceeEEEEEecCC--CCchhhhHHhhhcC
Q psy7848 707 GKSNDYLGCLELCCNS--KGDRLRHWVDMMKY 736 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s--~ge~~~hW~~ll~~ 736 (754)
.+ |++||.+.|++.. .+....+|++|...
T Consensus 75 ~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~ 105 (118)
T cd08681 75 RK-PDLIGDTEVDLSPALKEGEFDDWYELTLK 105 (118)
T ss_pred CC-CcceEEEEEecHHHhhcCCCCCcEEeccC
Confidence 76 9999999999985 34456778877643
|
Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr |
| >cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=148.23 Aligned_cols=135 Identities=24% Similarity=0.281 Sum_probs=100.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecC-CCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~-TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
.|.|+|++|+||+.+|..|.+||||+|.+.+ ...+|+++.+ |+||+|||.|.|. +. +.....|.|.|||++
T Consensus 1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~-----~~~kTk~~~~~t~nP~WNE~F~f~-v~--~~~~~~l~v~V~d~~ 72 (150)
T cd04019 1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGN-----QVLRTRPSQTRNGNPSWNEELMFV-AA--EPFEDHLILSVEDRV 72 (150)
T ss_pred CEEEEEEEeECCCCCCCCCCCCeEEEEEECC-----EEeeeEeccCCCCCCcccCcEEEE-ec--CccCCeEEEEEEEec
Confidence 3899999999999999999999999999964 7889999876 6999999999994 43 223468999999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccc-cccccccccceeEEeeeccccccce
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV-WGEEECWQHGKIFLTLCFSTKKRAL 630 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~-~~~~~~~~~GeL~VsL~y~p~~g~L 630 (754)
..++ ++||++.|+|.++..+.. .......||+|...... .+.......|+|+|.+.|.+....+
T Consensus 73 ~~~~dd~lG~v~i~L~~l~~~~~--~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~~~~~ 138 (150)
T cd04019 73 GPNKDEPLGRAVIPLNDIERRVD--DRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGGYHVL 138 (150)
T ss_pred CCCCCCeEEEEEEEHHHCcccCC--CCccCCceEECcCCCCcccccccCcccccEEEEEEecCcceEe
Confidence 8876 999999999999864311 11123455555433210 0111235689999999998654443
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates |
| >KOG0696|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.2e-17 Score=172.17 Aligned_cols=112 Identities=35% Similarity=0.508 Sum_probs=101.5
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
+.+|+|.+.+.. ....|+|+|.+|+||.+||.+|.+||||++.|.|+.+...+.+|++++.|+||+|||+|.|. +..
T Consensus 166 E~RGrl~l~~~~--~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~-Lkp 242 (683)
T KOG0696|consen 166 ERRGRLYLEAHI--KRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFK-LKP 242 (683)
T ss_pred hhcceEEEEEEe--cCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEe-ccc
Confidence 679999998887 68899999999999999999999999999999998888889999999999999999999995 444
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
.+. .+.|.|+|||||+.++ +|+|...+.+.+|...
T Consensus 243 ~Dk-drRlsiEvWDWDrTsRNDFMGslSFgisEl~K~ 278 (683)
T KOG0696|consen 243 SDK-DRRLSIEVWDWDRTSRNDFMGSLSFGISELQKA 278 (683)
T ss_pred ccc-cceeEEEEecccccccccccceecccHHHHhhc
Confidence 444 3789999999999999 9999999999998654
|
|
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.8e-16 Score=144.47 Aligned_cols=108 Identities=28% Similarity=0.371 Sum_probs=92.4
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|++++..|.+||||+|++.+. ....||.++++++||+|||+|.|.+.. .....|.|+|||++.++.
T Consensus 2 lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~--~~~~kT~~v~~t~nP~Wne~f~f~~~~--~~~~~L~~~V~d~d~~~~ 77 (124)
T cd04037 2 VRVYVVRARNLQPKDPNGKSDPYLKIKLGKK--KINDRDNYIPNTLNPVFGKMFELEATL--PGNSILKISVMDYDLLGS 77 (124)
T ss_pred EEEEEEECcCCCCCCCCCCCCcEEEEEECCe--eccceeeEEECCCCCccceEEEEEecC--CCCCEEEEEEEECCCCCC
Confidence 7899999999999999999999999999422 235788888999999999999998742 235789999999999999
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
|++||.+.|++....- ..||+.|...|.....
T Consensus 78 dd~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~ 109 (124)
T cd04037 78 DDLIGETVIDLEDRFF-SKHRATCGLPPTYEES 109 (124)
T ss_pred CceeEEEEEeeccccc-chHHHhccCCCccccc
Confidence 9999999999997644 7899999988876644
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2) | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-16 Score=144.24 Aligned_cols=89 Identities=28% Similarity=0.443 Sum_probs=78.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+..+..|.+||||++++.+. ...++||+++++++||+|||+|.|.+... ....|.|+|||++.+ .
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~-~ 77 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTA-SDEKKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV-M 77 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCC-CCccCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC-C
Confidence 7899999999999998899999999998543 23578999999999999999999998643 346799999999998 8
Q ss_pred CceeEEEEEecCC
Q psy7848 710 NDYLGCLELCCNS 722 (754)
Q Consensus 710 ddfLG~v~L~l~s 722 (754)
|++||.+.+++..
T Consensus 78 ~~~iG~~~~~l~~ 90 (119)
T cd04036 78 DDHLGTVLFDVSK 90 (119)
T ss_pred CcccEEEEEEHHH
Confidence 9999999999875
|
A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-16 Score=145.10 Aligned_cols=118 Identities=29% Similarity=0.429 Sum_probs=92.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+.+ .+||||++++.. .+.+|++++++.||+|||+|.|. ...+....|.|.|||+|..
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~~-----~~~kT~v~~~t~nP~Wne~F~f~---~~~~~~~~L~~~v~d~d~~ 69 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLGN-----YKGSTKAIERTSNPEWNQVFAFS---KDRLQGSTLEVSVWDKDKA 69 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEECC-----ccccccccCCCCCCccceEEEEE---cCCCcCCEEEEEEEeCCCC
Confidence 89999999999987 689999999953 57799999999999999999995 2334568899999999988
Q ss_pred CCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 567 GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+++|||++.|+|.++....... ......||+|.+... ...+|+|+|++.|
T Consensus 70 ~~~~lG~~~i~l~~l~~~~~~~-~~~~~~W~~L~~~~~------~~~~G~i~l~~~~ 119 (121)
T cd08378 70 KDDFLGGVCFDLSEVPTRVPPD-SPLAPQWYRLEDKKG------GRVGGELMLAVWF 119 (121)
T ss_pred cCceeeeEEEEhHhCcCCCCCC-CCCCcceEEccCCCC------CccceEEEEEEEe
Confidence 6699999999999986542210 111234555543321 3578999999987
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.8e-16 Score=144.55 Aligned_cols=89 Identities=29% Similarity=0.441 Sum_probs=80.4
Q ss_pred cceeeccccccccccCCC--CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~--~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
|.|.|.|++|+||+..+. .|.+||||+|++ +..+++|+++++++||.|||+|.|.+.. .....|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~----~~~~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~ 74 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV----GAQRFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKD 74 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE----CCEEEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECC
Confidence 578999999999999988 889999999998 3458899999999999999999999863 45689999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy7848 706 YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s 722 (754)
.++.+++||.+.|++..
T Consensus 75 ~~~~~~~lG~~~i~l~~ 91 (128)
T cd04024 75 RFAGKDYLGEFDIALEE 91 (128)
T ss_pred CCCCCCcceEEEEEHHH
Confidence 99899999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.4e-16 Score=142.74 Aligned_cols=106 Identities=25% Similarity=0.312 Sum_probs=87.4
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec--CccCCCeEEEEEEE
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI--TELSKQTLVITVWD 703 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~--~dL~~~~L~ItV~D 703 (754)
....|.|.|++|+||. +|.+||||+|++. ..+++|+++++++||.|||+|.|.+.. .++.+..|.|+|||
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d 73 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG----GQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYD 73 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEEC----CEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEc
Confidence 3467899999999998 6789999999994 347799999999999999999999642 34556899999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCC-cceeeEEeecC
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPD-HKHEGIHNLSI 749 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~-~~ie~Wh~L~~ 749 (754)
++.+++|++||.+.|++... +..|+ .-+..|+.|..
T Consensus 74 ~~~~~~~~~iG~~~i~l~~v----------~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 74 SRSLRSDTLIGSFKLDVGTV----------YDQPDHAFLRKWLLLTD 110 (111)
T ss_pred CcccccCCccEEEEECCccc----------cCCCCCcceEEEEEeeC
Confidence 99998899999999999864 33333 34578988864
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-15 Score=141.41 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=94.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|+|+|++|++|+.++..+.+||||+|++.. ...+|+++.++.||+|||+|.|. +... ....|.|+|||++.
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-~~~~--~~~~l~~~v~d~~~ 72 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNG-----QTLETSVVKKSCYPRWNEVFEFE-LMEG--ADSPLSVEVWDWDL 72 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEECC-----EEEeceeecCCCCCccCcEEEEE-cCCC--CCCEEEEEEEECCC
Confidence 3899999999999999888999999999842 67899999999999999999995 3322 25789999999999
Q ss_pred CCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEee
Q psy7848 566 YGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL 621 (754)
++. +|||++.++|.++........|+.|.. .... ........|.|.|.+
T Consensus 73 ~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~------~~~~-~~~~~~~~G~l~~~~ 122 (123)
T cd04025 73 VSKNDFLGKVVFSIQTLQQAKQEEGWFRLLP------DPRA-EEESGGNLGSLRLKV 122 (123)
T ss_pred CCCCcEeEEEEEEHHHcccCCCCCCEEECCC------CCCC-CccccCceEEEEEEe
Confidence 887 999999999999876544455555542 1111 112256778887765
|
RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a |
| >cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.4e-16 Score=145.08 Aligned_cols=100 Identities=28% Similarity=0.424 Sum_probs=85.5
Q ss_pred EEEEEEEEecC---CCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 486 SLHVTLHRAKG---LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 486 ~L~VtIi~Arn---L~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.|+|+|++|+| |..+|..|.+||||+|.+.+ .+.||+++.+++||+|||+|.|+ +... ...|.|.|||
T Consensus 1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~-----~~~rTk~~~~~~nP~WnE~f~f~-v~~~---~~~l~v~V~d 71 (126)
T cd08379 1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGP-----KWVRTRTVEDSSNPRWNEQYTWP-VYDP---CTVLTVGVFD 71 (126)
T ss_pred CeEEEEEEeECCccccccccCCCCCeeEEEEECC-----EEeEcCcccCCCCCcceeEEEEE-ecCC---CCEEEEEEEE
Confidence 38999999999 88999999999999999943 68899999999999999999995 3221 2589999999
Q ss_pred CCCC-------CCccceeeeecCcccCCCCccceEeecc
Q psy7848 563 DDKY-------GHDFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 563 ~d~~-------g~dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
++.+ +++|||++.|+|..+..+.....|++|.
T Consensus 72 ~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~ 110 (126)
T cd08379 72 NSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLL 110 (126)
T ss_pred CCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeE
Confidence 9987 4499999999999998876666676665
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd04041 C2A_fungal C2 domain first repeat; fungal group | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.1e-16 Score=141.75 Aligned_cols=96 Identities=26% Similarity=0.415 Sum_probs=82.7
Q ss_pred CEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc-CcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el-~~~~L~~sV~D 562 (754)
|.|+|+|++|++|+..|.. +.+||||+|++.+.+ ....+|+++++++||+|||.|.|. +...++ ....|.|.|||
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~--~~~~kT~v~~~t~nP~Wne~f~f~-~~~~~~~~~~~l~~~V~d 77 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFG--KPLYSTRIIRKDLNPVWEETWFVL-VTPDEVKAGERLSCRLWD 77 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCC--CccEeeeeECCCCCCccceeEEEE-eCchhccCCCEEEEEEEe
Confidence 6799999999999999987 899999999996543 356899999999999999999985 333323 35789999999
Q ss_pred CCCCCC-ccceeeeecCcccCC
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~ 583 (754)
+|.++. ++||++.+++.+|..
T Consensus 78 ~d~~~~dd~lG~~~i~l~~l~~ 99 (111)
T cd04041 78 SDRFTADDRLGRVEIDLKELIE 99 (111)
T ss_pred CCCCCCCCcceEEEEEHHHHhc
Confidence 999987 999999999999974
|
C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=145.80 Aligned_cols=110 Identities=19% Similarity=0.261 Sum_probs=87.5
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec-----CccC--CCeEEEEE
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI-----TELS--KQTLVITV 701 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~-----~dL~--~~~L~ItV 701 (754)
+|.|.|++|++|+.+|.+|.+||||+|++. ..++||+++++|+||.|||+|.|.+.. .++. ...|.|+|
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~----~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V 77 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFL----NQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVEL 77 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEEC----CeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEE
Confidence 689999999999999999999999999993 458899999999999999999998431 1222 25799999
Q ss_pred EEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 702 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
||++..+.|++||++.+........ . .++..+.+||+|...
T Consensus 78 ~d~d~~~~d~~iG~~~i~~~~~~~~--~------~~~~~~~~W~~L~~~ 118 (135)
T cd04017 78 FDQDSVGKDEFLGRSVAKPLVKLDL--E------EDFPPKLQWFPIYKG 118 (135)
T ss_pred EeCcCCCCCccceEEEeeeeeeccc--C------CCCCCCceEEEeecC
Confidence 9999999999999999853321110 0 156778899998744
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-16 Score=151.85 Aligned_cols=95 Identities=35% Similarity=0.613 Sum_probs=82.2
Q ss_pred eccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-------------------------ceeeeeeecCCCC
Q psy7848 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-------------------------RKYKTGVKWKTLN 676 (754)
Q Consensus 622 ~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-------------------------~k~KT~v~kkTlN 676 (754)
...|..+.|.|.|++|+||.++|.+|.+||||+|++.+.... ..++|.++++|+|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 456677999999999999999999999999999999654211 2479999999999
Q ss_pred CccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 677 PIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 677 P~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
|.|||+|.|.+. ++....|.|+|||++ ++|||.+.|+++.
T Consensus 102 P~WnE~F~f~v~--~~~~~~L~i~V~D~d----d~~IG~v~i~l~~ 141 (153)
T cd08676 102 PVWNETFRFEVE--DVSNDQLHLDIWDHD----DDFLGCVNIPLKD 141 (153)
T ss_pred CccccEEEEEec--cCCCCEEEEEEEecC----CCeEEEEEEEHHH
Confidence 999999999985 445689999999998 8999999999875
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.4e-15 Score=147.49 Aligned_cols=123 Identities=25% Similarity=0.342 Sum_probs=98.1
Q ss_pred CCEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEEeCCCCCceEEEeeeecCCC
Q psy7848 484 TCSLHVTLHRAKGLRAMD------------------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 533 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d------------------------------~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~Tl 533 (754)
.|.|.|+|++|++|+.+| ..|.+||||+|.+.+ ....+|+++.++.
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~----~~~~rT~v~~~~~ 81 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAG----ARVARTRVIENSE 81 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECC----eEeeEEEEeCCCC
Confidence 388999999999999988 346789999999953 2457999999999
Q ss_pred CCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccc
Q psy7848 534 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQ 613 (754)
Q Consensus 534 NP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~ 613 (754)
||+|||.|.|+ +... ...|.|.|||+|.++.++||.+.|+++++..+...+.|++|.... ......
T Consensus 82 nP~WnE~F~~~-~~~~---~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~----------~~~~~~ 147 (158)
T cd04015 82 NPVWNESFHIY-CAHY---ASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSN----------GKPPKP 147 (158)
T ss_pred CCccceEEEEE-ccCC---CCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCC----------CCCCCC
Confidence 99999999985 3322 357999999999988899999999999998776666677664310 111345
Q ss_pred cceeEEeeecc
Q psy7848 614 HGKIFLTLCFS 624 (754)
Q Consensus 614 ~GeL~VsL~y~ 624 (754)
.|+|+|++.|.
T Consensus 148 ~~~l~v~~~f~ 158 (158)
T cd04015 148 GAKIRVSLQFT 158 (158)
T ss_pred CCEEEEEEEEC
Confidence 78999999883
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-15 Score=143.05 Aligned_cols=104 Identities=26% Similarity=0.394 Sum_probs=85.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||++++.+|.+||||+|.+. +....||+++++++||.|||.|.|.+... ...|.|.|||++.++.
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~~---~~~l~v~v~d~~~~~~ 75 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKVD---NEVIIRTATVWKTLNPFWGEEYTVHLPPG---FHTVSFYVLDEDTLSR 75 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEEC---CEeeeeeeeEcCCCCCcccceEEEeeCCC---CCEEEEEEEECCCCCC
Confidence 78999999999999999999999999993 23367999999999999999999998532 3689999999999999
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
|++||.+.|++.. +. ..+..++.|+.|++.
T Consensus 76 d~~iG~~~~~~~~----------~~-~~~~~~~~W~~L~~~ 105 (121)
T cd04054 76 DDVIGKVSLTREV----------IS-AHPRGIDGWMNLTEV 105 (121)
T ss_pred CCEEEEEEEcHHH----------hc-cCCCCCCcEEECeee
Confidence 9999999999752 22 223345677777653
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-15 Score=141.68 Aligned_cols=122 Identities=28% Similarity=0.381 Sum_probs=97.6
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+. ..+.+||||++++.. ...+++|+++.+|+||+|||.|.|. +... ...|.|.|||++..
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~---~~~~~kT~v~~~t~nP~Wne~f~f~-~~~~---~~~l~~~v~d~~~~ 71 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE---PPQKYQSSTQKNTSNPFWDEHFLFE-LSPN---SKELLFEVYDNGKK 71 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC---CCcEEEeEEEecCCCCccCceEEEE-eCCC---CCEEEEEEEECCCC
Confidence 6899999999988 678999999999852 1356899999999999999999985 4322 47899999999998
Q ss_pred CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccccc
Q psy7848 567 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK 627 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~ 627 (754)
++ +|||++.|++.++........|++|.. ... ......|+|.+.+.|.+..
T Consensus 72 ~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~------~~~----~~~~~~G~l~l~~~~~~~~ 123 (126)
T cd08678 72 SDSKFLGLAIVPFDELRKNPSGRQIFPLQG------RPY----EGDSVSGSITVEFLFMEPA 123 (126)
T ss_pred CCCceEEEEEEeHHHhccCCceeEEEEecC------CCC----CCCCcceEEEEEEEEeccc
Confidence 87 999999999999987656555655542 110 1246799999999997654
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.3e-15 Score=143.92 Aligned_cols=112 Identities=27% Similarity=0.505 Sum_probs=91.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC-
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG- 707 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~- 707 (754)
.|.|.|++|++|+.+|.+|.+||||+|++. ..+++|+++++|+||.|||+|.|.+... ...|.|+|||+|..
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~----~~~~kT~~v~~t~~P~Wne~f~f~~~~~---~~~l~i~v~d~d~~~ 74 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVG----KTKKRTKTIPQNLNPVWNEKFHFECHNS---SDRIKVRVWDEDDDI 74 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEEC----CEeeecceecCCCCCccceEEEEEecCC---CCEEEEEEEECCCCc
Confidence 588999999999999999999999999983 3478999999999999999999987422 46899999999852
Q ss_pred ----------CCCceeEEEEEecCCCCchhhhHHhhhcCCC-cceeeEEee
Q psy7848 708 ----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPD-HKHEGIHNL 747 (754)
Q Consensus 708 ----------~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~-~~ie~Wh~L 747 (754)
+.+++||.+.+++.........||.|....+ ..+.++..|
T Consensus 75 ~~~~~~~~~~~~~~~iG~~~i~l~~~~~~~~~w~~L~~~~~~~~~~G~i~~ 125 (127)
T cd04027 75 KSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKRTDKSAVSGAIRL 125 (127)
T ss_pred ccccceeccccCCCcceEEEEEhHHccCCCCeEEECccCCCCCcEeEEEEE
Confidence 5799999999999877667777888775443 244555554
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.6e-15 Score=145.38 Aligned_cols=109 Identities=29% Similarity=0.452 Sum_probs=89.7
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC-------------ccCCCe
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-------------ELSKQT 696 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-------------dL~~~~ 696 (754)
|.|.|++|+||+.+ .+|.+||||+|++.......+++|++++++.||.|||+|.|.+... ++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 67999999999998 8889999999999754224589999999999999999999998653 446789
Q ss_pred EEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 697 LVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 697 L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
|.|+|||++.++.++|||.+.|++.... .....+.|+.|++..
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~------------~~~~~~~W~~L~~~~ 122 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQ------------QAGSHQAWYFLQPRE 122 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhcc------------CCCcccceEecCCcC
Confidence 9999999999889999999999988532 233456777776654
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.1e-16 Score=143.82 Aligned_cols=84 Identities=31% Similarity=0.445 Sum_probs=74.5
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|.|.|++|+||+.+ .+||||++++. ..+.||+++++|+||+|||+|.|.+. ++....|.|+|||++.+
T Consensus 1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~----~~~~kT~v~~~t~nP~Wne~F~f~~~--~~~~~~L~~~v~d~d~~- 69 (121)
T cd08378 1 YLYVRVVKARGLPAN----SNDPVVEVKLG----NYKGSTKAIERTSNPEWNQVFAFSKD--RLQGSTLEVSVWDKDKA- 69 (121)
T ss_pred CEEEEEEEecCCCcc----cCCCEEEEEEC----CccccccccCCCCCCccceEEEEEcC--CCcCCEEEEEEEeCCCC-
Confidence 378999999999887 68999999994 35789999999999999999999974 44678999999999987
Q ss_pred CCceeEEEEEecCCC
Q psy7848 709 SNDYLGCLELCCNSK 723 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~ 723 (754)
.+++||.+.|++...
T Consensus 70 ~~~~lG~~~i~l~~l 84 (121)
T cd08378 70 KDDFLGGVCFDLSEV 84 (121)
T ss_pred cCceeeeEEEEhHhC
Confidence 789999999999864
|
MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.9e-16 Score=149.25 Aligned_cols=106 Identities=20% Similarity=0.285 Sum_probs=87.0
Q ss_pred eeeccccccc--cccCCCCCCCCceEEEEe-cCCCCcceeeeeeecCCCCCccceeEEEEeecC------ccCCCeEEEE
Q psy7848 630 LIVNLIKCTN--LIPMDSNGFSDPFIKLYL-KPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT------ELSKQTLVIT 700 (754)
Q Consensus 630 L~V~V~~A~n--L~~~d~~G~sDPYVKV~L-~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~------dL~~~~L~It 700 (754)
+.++|..|.+ |++.+.++.+||||++++ .|.....+.||+++++|+||+|||+|.|.|... .+....|.|+
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~ 83 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE 83 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence 3455555555 788888999999999997 454445699999999999999999999999654 3567889999
Q ss_pred EEEccCC-CCCceeEEEEEecCCC--CchhhhHHhhhc
Q psy7848 701 VWDKDYG-KSNDYLGCLELCCNSK--GDRLRHWVDMMK 735 (754)
Q Consensus 701 V~D~d~~-~~ddfLG~v~L~l~s~--ge~~~hW~~ll~ 735 (754)
|||++.+ .+|++||.+.|.|... ..+..+|++|+.
T Consensus 84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~ 121 (155)
T cd08690 84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD 121 (155)
T ss_pred EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh
Confidence 9999976 5799999999999875 456777998884
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.3e-15 Score=138.79 Aligned_cols=115 Identities=27% Similarity=0.382 Sum_probs=92.8
Q ss_pred CEEEEEEEEecCCCCCCC------CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDI------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~------~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
|.|.|+|++|+||+..+. .+.+||||++++.+ ..++|+++.++.||+|||.|.|. +.. .....|.|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~-----~~~kT~~~~~t~~P~W~e~f~~~-v~~--~~~~~l~i 72 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGA-----QTFKSKVIKENLNPKWNEVYEAV-VDE--VPGQELEI 72 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECC-----EeEEccccCCCCCCcccceEEEE-eCC--CCCCEEEE
Confidence 579999999999998874 36899999999953 68899999999999999999984 332 23579999
Q ss_pred EEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 559 LVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 559 sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
.|||++...+++||++.++|.++........|++|. ....|+|++.+++
T Consensus 73 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~----------------~~~~G~~~~~~~~ 121 (121)
T cd08391 73 ELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLE----------------DVKSGRLHLKLEW 121 (121)
T ss_pred EEEecCCCCCCcEEEEEEEHHHhcccCccceEEECc----------------CCCCceEEEEEeC
Confidence 999999884499999999999987654444555553 1257999888764
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.9e-15 Score=143.28 Aligned_cols=90 Identities=31% Similarity=0.434 Sum_probs=79.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCC-CCc--ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHK--RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~-~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|++|+||+.++..|.+||||+|++.+. .+. .+++|.++++|+||.|||+|.|.+... ...|.|+|||++.
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~ 78 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENR 78 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCC
Confidence 7899999999999999999999999999754 121 267999999999999999999998643 4679999999999
Q ss_pred CCCCceeEEEEEecCC
Q psy7848 707 GKSNDYLGCLELCCNS 722 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s 722 (754)
++.+++||.+.|++.+
T Consensus 79 ~~~~~~iG~~~i~l~~ 94 (133)
T cd04033 79 LTRDDFLGQVEVPLNN 94 (133)
T ss_pred CCCCCeeEEEEEEHHH
Confidence 9999999999999876
|
Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-15 Score=141.73 Aligned_cols=101 Identities=32% Similarity=0.500 Sum_probs=86.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|.|++|+||+.++.++.+||||+|++. ...++|+++++++||.|||+|.|.+. ++ ...|.|+|||++..
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~----~~~~~T~~~~~t~nP~W~e~f~~~~~--~~-~~~l~~~v~d~~~~ 73 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELV----NARLQTHTIYKTLNPEWNKIFTFPIK--DI-HDVLEVTVYDEDKD 73 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEEC----CEeeecceecCCcCCccCcEEEEEec--Cc-CCEEEEEEEECCCC
Confidence 5789999999999999999999999999993 33679999999999999999999985 33 47899999999998
Q ss_pred CCCceeEEEEEecCCCCchhhhHHhhhc
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWVDMMK 735 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~~ll~ 735 (754)
+++++||.+.+++.....+..+|+.+..
T Consensus 74 ~~~~~iG~~~~~l~~~~~~~~~~~~l~~ 101 (119)
T cd08377 74 KKPEFLGKVAIPLLSIKNGERKWYALKD 101 (119)
T ss_pred CCCceeeEEEEEHHHCCCCCceEEECcc
Confidence 8999999999998775555566776653
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=7.8e-15 Score=173.44 Aligned_cols=225 Identities=23% Similarity=0.367 Sum_probs=163.3
Q ss_pred CCEEEEEEEEecCCCCCC--CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d--~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~ 561 (754)
-|+|.|+|..|++|...+ .++..|||+.+.+.. ....||++++++.||+|||+|.. ....+ ...|.|+||
T Consensus 435 IGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~----r~~gkT~v~~nt~nPvwNEt~Yi---~lns~-~d~L~Lsly 506 (1227)
T COG5038 435 IGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSD----RVIGKTRVKKNTLNPVWNETFYI---LLNSF-TDPLNLSLY 506 (1227)
T ss_pred eEEEEEEEeeccCcccccccccCCCCceEEEEecc----ccCCccceeeccCCccccceEEE---Eeccc-CCceeEEEE
Confidence 378999999999999988 679999999999753 24459999999999999999865 22333 478999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCCCccce-Eeec-------------ccCCCCCccc-cccccc---c------------
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPHISRDL-CLNL-------------CKHYPVPREE-EVWGEE---E------------ 610 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~~~~~~-~~~L-------------~~~~~l~~~~-~~~~~~---~------------ 610 (754)
|.+.+.. +.+|.+.++|..|..+..... ...+ .+||+.-... ...+.. +
T Consensus 507 D~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~ 586 (1227)
T COG5038 507 DFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLR 586 (1227)
T ss_pred eccccCCcceeeeEEechHHhhhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEee
Confidence 9776665 999999999998876533321 1111 0233321100 000000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy7848 611 -------------------------------------------------------------------------------- 610 (754)
Q Consensus 611 -------------------------------------------------------------------------------- 610 (754)
T Consensus 587 ~~~~l~~~~~~~~~~~a~l~~~~keV~st~~~k~t~~~~wn~~~~~~v~~~~ns~~~~~~~d~~~g~~i~~~~~~l~~li 666 (1227)
T COG5038 587 EVKALDELSSKKDNKSAELYTNAKEVYSTGKLKFTNHPSWNLQYNVLVTDRKNSSIKVVTFDVQSGKVIATEGSTLPDLI 666 (1227)
T ss_pred ccccccCccccccceeEEEEecceEEeccceeeeccCCceeeecceEeccCcceeEEEEecccccCceeccccccchHhh
Confidence
Q ss_pred ------------ccccceeEEeeeccc---------------cccceeeccccccccccCCCCCCCCceEEEEecCCCCc
Q psy7848 611 ------------CWQHGKIFLTLCFST---------------KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK 663 (754)
Q Consensus 611 ------------~~~~GeL~VsL~y~p---------------~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k 663 (754)
...+|+|.++..+.| ..|.++|.|..|.+|.....+|.+|||.+|.+. +.
T Consensus 667 ~~t~dt~~~f~~~~~kg~I~~t~~W~Pi~~~~~~~s~~~~~~pIg~irv~v~~andl~n~i~g~~~dPya~v~~n---~~ 743 (1227)
T COG5038 667 DRTLDTFLVFPLRNPKGRIFITNYWKPIYNAGGSSSKTVYDTPIGAIRVSVRKANDLRNEIPGGKSDPYATVLVN---NL 743 (1227)
T ss_pred hccccceEEEEcCCCcceEEEEeccceeeccccccceeeecCccceEEEEeehhhcccccccCcccccceEEEec---ce
Confidence 011223333222111 128899999999999988889999999999994 34
Q ss_pred ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 664 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 664 ~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
.++||-....|+||.||+....+|.. ....|.+.++|++..+.|.+||++.+.+..
T Consensus 744 ~k~rti~~~~~~npiw~~i~Yv~v~s---k~~r~~l~~~~~~~sgddr~lg~~~i~vsn 799 (1227)
T COG5038 744 VKYRTIYGSSTLNPIWNEILYVPVTS---KNQRLTLECMDYEESGDDRNLGEVNINVSN 799 (1227)
T ss_pred eEEEEecccCccccceeeeEEEEecC---CccEEeeeeecchhccccceeceeeeeeee
Confidence 59999999999999999988777742 245689999999999999999999999875
|
|
| >cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.1e-15 Score=139.04 Aligned_cols=125 Identities=26% Similarity=0.372 Sum_probs=95.3
Q ss_pred CEEEEEEEEecCCCCCCC--CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~--~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
|.|.|+|++|+||+..+. .+.+||||+|++. ...++|+++.+++||.|||.|.|+ +.. .....|.|.|||
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~-----~~~~kT~~~~~t~~P~Wne~f~~~-~~~--~~~~~l~i~v~d 72 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVG-----AQRFKTQTIPNTLNPKWNYWCEFP-IFS--AQNQLLKLILWD 72 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEEC-----CEEEecceecCCcCCccCCcEEEE-ecC--CCCCEEEEEEEE
Confidence 579999999999999998 8899999999984 367899999999999999999985 332 345899999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
++..+. ++||++.|+|.++...... -....||.+.+... .......|+|+|.+.+
T Consensus 73 ~~~~~~~~~lG~~~i~l~~~~~~~~~---~~~~~w~~L~~~~~---~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 73 KDRFAGKDYLGEFDIALEEVFADGKT---GQSDKWITLKSTRP---GKTSVVSGEIHLQFSW 128 (128)
T ss_pred CCCCCCCCcceEEEEEHHHhhccccc---CccceeEEccCccc---CccccccceEEEEEEC
Confidence 999876 9999999999998632110 01123444443211 1224578999988753
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu |
| >cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein | Back alignment and domain information |
|---|
Probab=99.62 E-value=4e-15 Score=140.13 Aligned_cols=86 Identities=26% Similarity=0.447 Sum_probs=75.7
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+. .+|.+||||++++.. ...+++|+++++|+||+|||+|.|.+.. ....|.|.|||++..+.
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~--~~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~~~~ 73 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMDE--PPQKYQSSTQKNTSNPFWDEHFLFELSP---NSKELLFEVYDNGKKSD 73 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEECC--CCcEEEeEEEecCCCCccCceEEEEeCC---CCCEEEEEEEECCCCCC
Confidence 6799999999988 778999999999931 1347899999999999999999999853 25789999999999989
Q ss_pred CceeEEEEEecCC
Q psy7848 710 NDYLGCLELCCNS 722 (754)
Q Consensus 710 ddfLG~v~L~l~s 722 (754)
|+|||.+.|++..
T Consensus 74 ~~~lG~~~i~l~~ 86 (126)
T cd08678 74 SKFLGLAIVPFDE 86 (126)
T ss_pred CceEEEEEEeHHH
Confidence 9999999999985
|
The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a |
| >cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.5e-15 Score=138.25 Aligned_cols=91 Identities=29% Similarity=0.465 Sum_probs=81.6
Q ss_pred EEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCee-ceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 487 LHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 487 L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~W-nE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|+|++|++|+.++ ..+.+||||++++.+ .+++|+++.+++||.| ||.|.|. +...++....|.|+|||++
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~W~ne~f~f~-i~~~~l~~~~l~i~V~d~d 74 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGS-----TTYKTDVVKKSLNPVWNSEWFRFE-VDDEELQDEPLQIRVMDHD 74 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEECC-----eeEecceecCCCCCcccCcEEEEE-cChHHcCCCeEEEEEEeCC
Confidence 679999999999998 478899999999953 7889999999999999 9999994 6666666689999999999
Q ss_pred CCCC-ccceeeeecCcccCC
Q psy7848 565 KYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~ 583 (754)
.+++ ++||++.++|.++..
T Consensus 75 ~~~~~~~iG~~~~~l~~l~~ 94 (110)
T cd08688 75 TYSANDAIGKVYIDLNPLLL 94 (110)
T ss_pred CCCCCCceEEEEEeHHHhcc
Confidence 9887 999999999999876
|
The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.4e-15 Score=138.57 Aligned_cols=121 Identities=21% Similarity=0.274 Sum_probs=92.8
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|.|+|++|+||+.. +.+||||+|++.. ....+|++. ++.||.|||.|.|. +...++ ..|.|.|||++
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~----~~~~kT~v~-~~~nP~WnE~f~f~-~~~~~~--~~l~v~v~d~~ 72 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLNE----VKVARTKVR-EGPNPVWSEEFVFD-DLPPDV--NSFTISLSNKA 72 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEECC----EeEEEeecC-CCCCCccCCEEEEe-cCCCCc--CEEEEEEEECC
Confidence 4699999999999874 4789999999942 245688875 58999999999995 222222 47899999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
.++. ++||++.|+|..+..+...+.|+.|.. ... ......|+|+|++.|.+.
T Consensus 73 ~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~------~~~----~~~~~~G~i~l~l~~~~~ 125 (126)
T cd08400 73 KRSKDSEIAEVTVQLSKLQNGQETDEWYPLSS------ASP----LKGGEWGSLRIRARYSHE 125 (126)
T ss_pred CCCCCCeEEEEEEEHhHccCCCcccEeEEccc------CCC----CCCCcCcEEEEEEEEEcc
Confidence 9887 999999999999887655555555542 210 124578999999999764
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-15 Score=139.17 Aligned_cols=109 Identities=22% Similarity=0.320 Sum_probs=88.7
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCcc-CCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL-~~~~L~ItV~D~d 705 (754)
|.|.|.|++|+||+.++..+.+||||+|++. ...++|+++. +++||.|||+|.|.+...+. ....|.|.|||++
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~----~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~ 76 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCR----TQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKD 76 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEEC----CEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECc
Confidence 5789999999999999988999999999983 3467888877 48999999999999875432 2468999999999
Q ss_pred CCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 706 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
.++.+++||.+.|++.. ++.. ...++|+.|+|..+
T Consensus 77 ~~~~d~~iG~~~i~l~~----------l~~~--~~~~~~~~l~p~~~ 111 (124)
T cd04049 77 NFSDDDFIGEATIHLKG----------LFEE--GVEPGTAELVPAKY 111 (124)
T ss_pred cCCCCCeEEEEEEEhHH----------hhhC--CCCcCceEeeccce
Confidence 99899999999999874 3332 23467777777654
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=140.11 Aligned_cols=88 Identities=28% Similarity=0.497 Sum_probs=77.4
Q ss_pred cceeeccccccccccCCC------CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDS------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 701 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~------~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV 701 (754)
|.|.|.|++|+||+.++. .|.+||||+|++. ...++|+++++++||+|||.|.|.+.. .....|.|+|
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~----~~~~kT~~~~~t~~P~W~e~f~~~v~~--~~~~~l~i~v 74 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG----AQTFKSKVIKENLNPKWNEVYEAVVDE--VPGQELEIEL 74 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC----CEeEEccccCCCCCCcccceEEEEeCC--CCCCEEEEEE
Confidence 568999999999998875 3689999999994 368999999999999999999999853 3467999999
Q ss_pred EEccCCCCCceeEEEEEecCC
Q psy7848 702 WDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s 722 (754)
||++.. .+++||.+.|++..
T Consensus 75 ~d~~~~-~~~~iG~~~i~l~~ 94 (121)
T cd08391 75 FDEDPD-KDDFLGRLSIDLGS 94 (121)
T ss_pred EecCCC-CCCcEEEEEEEHHH
Confidence 999988 89999999999875
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.5e-15 Score=137.84 Aligned_cols=103 Identities=30% Similarity=0.511 Sum_probs=85.0
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|+|.|++|+||+.++.+|.+||||+|++.+. ....+||+++++++||.|||+|.|.+... ....|.|+|||++.++
T Consensus 2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~-~~~~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~ 78 (126)
T cd04043 2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNG-KRRIAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG 78 (126)
T ss_pred EEEEEEEEeECCCCCCCCCCCCceEEEEECCC-CeeeecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC
Confidence 57899999999999999999999999997432 23478999999999999999999998643 3578999999999988
Q ss_pred CCceeEEEEEecCCC-----CchhhhHHhhh
Q psy7848 709 SNDYLGCLELCCNSK-----GDRLRHWVDMM 734 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~-----ge~~~hW~~ll 734 (754)
.+++||.+.|++... +.....|++|.
T Consensus 79 ~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~ 109 (126)
T cd04043 79 KHDLCGRASLKLDPKRFGDDGLPREIWLDLD 109 (126)
T ss_pred CCceEEEEEEecCHHHcCCCCCCceEEEEcC
Confidence 999999999998741 22344566554
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=137.00 Aligned_cols=121 Identities=23% Similarity=0.334 Sum_probs=94.9
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|+|+|++|++|...+..|.+||||++.+.+ ..++|+++.++.||+|||.|.|+ +.. ....|.|+|||++
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-~~~---~~~~l~i~V~d~~ 73 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCEG-----ESVRSPVQKDTLSPEFDTQAIFY-RKK---PRSPIKIQVWNSN 73 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEECC-----EEEEeCccCCCCCCcccceEEEE-ecC---CCCEEEEEEEECC
Confidence 57999999999999999899999999999853 67899999999999999999985 222 2578999999999
Q ss_pred CCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 565 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 565 ~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
..+++|||++.+++.++..... .+++|.. .. ........|+|.+.+.+.+
T Consensus 74 ~~~d~~lG~~~~~l~~~~~~~~--~~~~l~~--~~-------~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 74 LLCDEFLGQATLSADPNDSQTL--RTLPLRK--RG-------RDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred CCCCCceEEEEEecccCCCcCc--eEEEccc--CC-------CCCCCCCCCEEEEEEEEcc
Confidence 9877999999999998654333 3333431 00 1123567899998887654
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP) | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-14 Score=135.26 Aligned_cols=117 Identities=37% Similarity=0.581 Sum_probs=93.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|.|+|++|+||+.++..+.+||||+|++.. ...+|+++.++.||.|||+|.|+ +. ++ ...|.|+|||++
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~-----~~~~T~~~~~t~nP~W~e~f~~~-~~--~~-~~~l~~~v~d~~ 71 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVN-----ARLQTHTIYKTLNPEWNKIFTFP-IK--DI-HDVLEVTVYDED 71 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECC-----EeeecceecCCcCCccCcEEEEE-ec--Cc-CCEEEEEEEECC
Confidence 57999999999999999889999999999953 56799999999999999999985 32 22 378999999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
..+. ++||++.+++.++..+.. .|+.| .... ......|+|++++.+
T Consensus 72 ~~~~~~~iG~~~~~l~~~~~~~~--~~~~l------~~~~-----~~~~~~G~i~l~~~~ 118 (119)
T cd08377 72 KDKKPEFLGKVAIPLLSIKNGER--KWYAL------KDKK-----LRTRAKGSILLEMDV 118 (119)
T ss_pred CCCCCceeeEEEEEHHHCCCCCc--eEEEC------cccC-----CCCceeeEEEEEEEe
Confidence 9776 999999999999875532 23333 2211 113468999999876
|
MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-15 Score=136.67 Aligned_cols=121 Identities=26% Similarity=0.342 Sum_probs=95.2
Q ss_pred CEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|.|+|++|++|+..+ ..+.+||||++.+.++ ....+|+++.++.||.|||.|.|. +. .....|.|+|||+
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~---~~~~kT~~~~~~~~P~Wne~~~~~-v~---~~~~~l~~~v~d~ 74 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR---RELARTKVKKDTSNPVWNETKYIL-VN---SLTEPLNLTVYDF 74 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC---CcceEeeeecCCCCCcceEEEEEE-eC---CCCCEEEEEEEec
Confidence 57999999999999765 4567999999999642 367899999999999999999984 44 2357999999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
+..+. ++||++.++|.++........+ ++.+.. .....|+|+|+|.|.|
T Consensus 75 ~~~~~d~~iG~~~~~l~~l~~~~~~~~~-----~~~~~~--------~~k~~G~i~~~l~~~p 124 (124)
T cd04044 75 NDKRKDKLIGTAEFDLSSLLQNPEQENL-----TKNLLR--------NGKPVGELNYDLRFFP 124 (124)
T ss_pred CCCCCCceeEEEEEEHHHhccCccccCc-----chhhhc--------CCccceEEEEEEEeCC
Confidence 99877 9999999999998865443211 112211 1356799999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD) | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.2e-15 Score=146.68 Aligned_cols=106 Identities=25% Similarity=0.331 Sum_probs=86.4
Q ss_pred cceeeccccccccccCC------------------------------CCCCCCceEEEEecCCCCcceeeeeeecCCCCC
Q psy7848 628 RALIVNLIKCTNLIPMD------------------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNP 677 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d------------------------------~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP 677 (754)
|.|.|+|++|++|+.|| ..|.+||||+|++. +.+..||+++++++||
T Consensus 7 G~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~---~~~~~rT~v~~~~~nP 83 (158)
T cd04015 7 GTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLA---GARVARTRVIENSENP 83 (158)
T ss_pred eeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEEC---CeEeeEEEEeCCCCCC
Confidence 78999999999999988 35779999999993 2235799999999999
Q ss_pred ccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC--CCchhhhHHhhhcCCCcc
Q psy7848 678 IFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 678 ~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~ge~~~hW~~ll~~P~~~ 740 (754)
+|||+|.|.+... ...|.|.|||+|.++ +++||.+.|++.. .+...++|++|....+.+
T Consensus 84 ~WnE~F~~~~~~~---~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~ 144 (158)
T cd04015 84 VWNESFHIYCAHY---ASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKP 144 (158)
T ss_pred ccceEEEEEccCC---CCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCCC
Confidence 9999999987532 357999999999886 6899999999886 455666777777654443
|
PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-15 Score=140.63 Aligned_cols=90 Identities=26% Similarity=0.450 Sum_probs=78.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
+.|.|.|++|++|+. +..|.+||||+|++. ..++||+++++++||+|||+|.|.+... .....|.|+|||++.+
T Consensus 28 ~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~----~~~~kT~vi~~t~nPvWNE~F~f~~~~~-~~~~~L~v~V~D~d~~ 101 (127)
T cd04032 28 ATLTVTVLRATGLWG-DYFTSTDGYVKVFFG----GQEKRTEVIWNNNNPRWNATFDFGSVEL-SPGGKLRFEVWDRDNG 101 (127)
T ss_pred EEEEEEEEECCCCCc-CcCCCCCeEEEEEEC----CccccCceecCCCCCcCCCEEEEecccC-CCCCEEEEEEEeCCCC
Confidence 789999999999974 677889999999993 3488999999999999999999974211 2457999999999999
Q ss_pred CCCceeEEEEEecCCC
Q psy7848 708 KSNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ 723 (754)
+.|++||.+.|++.+.
T Consensus 102 s~dd~IG~~~i~l~~~ 117 (127)
T cd04032 102 WDDDLLGTCSVVPEAG 117 (127)
T ss_pred CCCCeeEEEEEEecCC
Confidence 9999999999999863
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >KOG1030|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-15 Score=144.47 Aligned_cols=95 Identities=37% Similarity=0.614 Sum_probs=83.8
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
-|.|.|+|++|.||..+|..+.+||||.+.+. .++.+|+++.+++||+|||+|.|. |. +. ...|.+.|||+
T Consensus 5 vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg-----~q~lkT~~v~~n~NPeWNe~ltf~-v~--d~-~~~lkv~VyD~ 75 (168)
T KOG1030|consen 5 VGLLRVRVKRGKNLAIRDFLGSSDPYVVLELG-----NQKLKTRVVYKNLNPEWNEELTFT-VK--DP-NTPLKVTVYDK 75 (168)
T ss_pred ceEEEEEEEeecCeeeeccccCCCCeEEEEEC-----CeeeeeeeecCCCCCcccceEEEE-ec--CC-CceEEEEEEeC
Confidence 37899999999999999988999999999995 488999999999999999999994 33 22 37899999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCcc
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISR 587 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~ 587 (754)
|.+.. ||||+|.|+|..+......
T Consensus 76 D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 76 DTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred CCCCcccccceeeeccHHHHHHhhh
Confidence 99998 9999999999988765443
|
|
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-15 Score=142.66 Aligned_cols=111 Identities=27% Similarity=0.292 Sum_probs=89.6
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|.|++|+||+..+. +.+||||++++ +..++||+++++++||+|||+|.|.+... ...|.|+|||++.+
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~----g~~~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~ 73 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL----GNQKVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTF 73 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE----CCEEEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCC
Confidence 678999999999998887 88999999999 44689999999999999999999998632 57899999999999
Q ss_pred CCCceeEEEEEecCCCCch-hhhHHhhhcCCCcceeeEEee
Q psy7848 708 KSNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~-~~hW~~ll~~P~~~ie~Wh~L 747 (754)
+.|++||.+.+++...-+. ..+|..-+ ..+..+..|.+-
T Consensus 74 ~~dd~iG~a~i~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~ 113 (145)
T cd04038 74 SKDDSMGEAEIDLEPLVEAAKLDHLRDT-PGGTQIKKVLPS 113 (145)
T ss_pred CCCCEEEEEEEEHHHhhhhhhhhccccC-CCCEEEEEEecC
Confidence 9999999999998863321 22232222 226667777763
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-14 Score=137.40 Aligned_cols=124 Identities=22% Similarity=0.381 Sum_probs=93.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec----cccC--cceEEEE
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE----TDLS--LQSLHIL 559 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~----~el~--~~~L~~s 559 (754)
.|+|+|++|++|+.+|..|.+||||+|.+.. .+.+|+++.+|+||.|||.|.|..+.. .++. ...|.|+
T Consensus 2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~ 76 (135)
T cd04017 2 QLRAYIYQARDLLAADKSGLSDPFARVSFLN-----QSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVE 76 (135)
T ss_pred EEEEEEEEeecCcCCCCCCCCCCEEEEEECC-----eeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEE
Confidence 6899999999999999999999999999953 678999999999999999999854332 1121 2579999
Q ss_pred EeeCCCCCC-ccceeeee-cCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 560 VLDDDKYGH-DFLGEARF-PLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 560 V~D~d~~g~-dfLGev~I-~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
|||+|..++ +|||++.+ ++..+.... .......|++|... ....|+|+|++.+.+
T Consensus 77 V~d~d~~~~d~~iG~~~i~~~~~~~~~~---~~~~~~~W~~L~~~--------~~~~Geil~~~~~~~ 133 (135)
T cd04017 77 LFDQDSVGKDEFLGRSVAKPLVKLDLEE---DFPPKLQWFPIYKG--------GQSAGELLAAFELIE 133 (135)
T ss_pred EEeCcCCCCCccceEEEeeeeeecccCC---CCCCCceEEEeecC--------CCchhheeEEeEEEE
Confidence 999999887 99999987 544443210 11122344444322 247899999998865
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group | Back alignment and domain information |
|---|
Probab=99.58 E-value=2e-14 Score=134.93 Aligned_cols=118 Identities=25% Similarity=0.378 Sum_probs=93.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|+|++|++|+..+..+.+||||+|++.+.. ...++|+++.+++||.|||+|.|. +... ....|.|+|||++
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~--~~~~kT~~~~~t~~P~Wne~f~f~-i~~~--~~~~L~i~v~d~d 75 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGK--RRIAKTRTIYDTLNPRWDEEFELE-VPAG--EPLWISATVWDRS 75 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCC--eeeecccEecCCCCCcccceEEEE-cCCC--CCCEEEEEEEECC
Confidence 3689999999999999999999999999975421 357899999999999999999995 4332 3478999999999
Q ss_pred CCCC-ccceeeeecCcccCCC---CccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 565 KYGH-DFLGEARFPLNRLRPH---ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~---~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
..+. ++||++.++|..+... .....|+.|. ..|+|++.+.|..
T Consensus 76 ~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~------------------~~g~i~l~~~~~~ 122 (126)
T cd04043 76 FVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD------------------TQGRLLLRVSMEG 122 (126)
T ss_pred CCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC------------------CCCeEEEEEEEee
Confidence 9877 9999999999876432 2334455442 2588888887754
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap |
| >cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD) | Back alignment and domain information |
|---|
Probab=99.58 E-value=9.5e-15 Score=134.29 Aligned_cols=93 Identities=23% Similarity=0.359 Sum_probs=78.7
Q ss_pred CEEEEEEEEecCCCCCCCC----CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIH----GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~----g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
|.|.|+|++|++|+..+.. +.+||||+|++. ...+||+++++++||+|||.|.|. +...+. ...|.|.|
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~-----~~~~kT~v~~~t~nPvWne~f~f~-v~~~~~-~~~L~~~V 73 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFG-----RRVFRTSWRRHTLNPVFNERLAFE-VYPHEK-NFDIQFKV 73 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEEC-----CEeEeeeeecCCCCCcccceEEEE-EeCccC-CCEEEEEE
Confidence 6799999999999998742 358999999984 367899999999999999999995 433332 36899999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCC
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
||+|.+++ ++||++.|+|.+|...
T Consensus 74 ~D~d~~~~dd~IG~~~l~L~~l~~~ 98 (108)
T cd04039 74 LDKDKFSFNDYVATGSLSVQELLNA 98 (108)
T ss_pred EECCCCCCCcceEEEEEEHHHHHhh
Confidence 99999988 9999999999998654
|
PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.58 E-value=7.4e-15 Score=137.48 Aligned_cols=105 Identities=18% Similarity=0.246 Sum_probs=87.2
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|.|++|++|+..+.+|.+||||+|++. +..+++|.+++++.||.|||+|.|.+... ...|.|+|||++.+
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~ 74 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVN---GIVKGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKV 74 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEEC---CEEeeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCC
Confidence 5688999999999999999999999999993 23578999999999999999999988543 46899999999999
Q ss_pred CCCceeEEEEEecCC-CCchhhhHHhhhcCCC
Q psy7848 708 KSNDYLGCLELCCNS-KGDRLRHWVDMMKYPD 738 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s-~ge~~~hW~~ll~~P~ 738 (754)
+.|++||.+.+++.. ......-||.++..-.
T Consensus 75 ~~d~~IG~~~~~l~~l~~~~~~~~~~~~~~~~ 106 (120)
T cd04045 75 GKDRSLGSVEINVSDLIKKNEDGKYVEYDDEE 106 (120)
T ss_pred CCCCeeeEEEEeHHHhhCCCCCceEEecCCCc
Confidence 999999999999875 2224455666665543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1) | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.2e-14 Score=137.10 Aligned_cols=98 Identities=17% Similarity=0.371 Sum_probs=77.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..|.|.|++|+||+.. +.+||||+|++. +.+..||+++ +++||.|||+|.|.+...++ ..|.|.|||++.+
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~---~~~~~kT~v~-~~~nP~WnE~f~f~~~~~~~--~~l~v~v~d~~~~ 74 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISLN---EVKVARTKVR-EGPNPVWSEEFVFDDLPPDV--NSFTISLSNKAKR 74 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEEC---CEeEEEeecC-CCCCCccCCEEEEecCCCCc--CEEEEEEEECCCC
Confidence 4699999999999874 479999999993 2346788874 68999999999998654333 4789999999999
Q ss_pred CCCceeEEEEEecCC--CCchhhhHHhhh
Q psy7848 708 KSNDYLGCLELCCNS--KGDRLRHWVDMM 734 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s--~ge~~~hW~~ll 734 (754)
++|++||.+.|++.. .+...++||.|.
T Consensus 75 ~~d~~iG~v~i~l~~l~~~~~~~~W~~L~ 103 (126)
T cd08400 75 SKDSEIAEVTVQLSKLQNGQETDEWYPLS 103 (126)
T ss_pred CCCCeEEEEEEEHhHccCCCcccEeEEcc
Confidence 999999999999885 333445555554
|
RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki |
| >cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4 | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=134.26 Aligned_cols=118 Identities=29% Similarity=0.467 Sum_probs=91.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|.|+|++|++|+.++..|.+||||++.+.+ ....+|+++.+++||+|||.|.|. +... ...|.|.|||++.
T Consensus 1 ~l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~-~~~~---~~~l~v~v~d~~~ 72 (121)
T cd04054 1 SLYIRIVEGKNLPAKDITGSSDPYCIVKVDN----EVIIRTATVWKTLNPFWGEEYTVH-LPPG---FHTVSFYVLDEDT 72 (121)
T ss_pred CEEEEEEEeeCCcCCCCCCCCCceEEEEECC----EeeeeeeeEcCCCCCcccceEEEe-eCCC---CCEEEEEEEECCC
Confidence 3889999999999999999999999999852 245799999999999999999995 3322 3689999999999
Q ss_pred CCC-ccceeeeecCcccCCCC-ccceEeecccCCCCCccccccccccccccceeEEeee
Q psy7848 566 YGH-DFLGEARFPLNRLRPHI-SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC 622 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~~~-~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~ 622 (754)
++. ++||++.+++.++.... ..+.|+.| .+.. ......|+|++.+.
T Consensus 73 ~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L------~~~~-----~~~~~~G~i~l~~~ 120 (121)
T cd04054 73 LSRDDVIGKVSLTREVISAHPRGIDGWMNL------TEVD-----PDEEVQGEIHLELS 120 (121)
T ss_pred CCCCCEEEEEEEcHHHhccCCCCCCcEEEC------eeeC-----CCCccccEEEEEEE
Confidence 987 99999999998886432 23344444 3211 11346799988764
|
Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.5e-14 Score=137.33 Aligned_cols=100 Identities=24% Similarity=0.429 Sum_probs=82.7
Q ss_pred cceeeccccccccccCCC----------CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeE
Q psy7848 628 RALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTL 697 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~----------~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L 697 (754)
|.|.|.|++|+||...+. .|.+||||++++. +....+|+++++|+||.|||+|.|.+. ....|
T Consensus 4 g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~---~~~~~kT~~~~~t~~P~Wne~f~~~v~----~~~~l 76 (132)
T cd04014 4 GTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVD---DTHIGKTSTKPKTNSPVWNEEFTTEVH----NGRNL 76 (132)
T ss_pred eEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEEC---CEEEeEEeEcCCCCCCCcceeEEEEcC----CCCEE
Confidence 679999999999998876 3689999999993 234579999999999999999999995 34789
Q ss_pred EEEEEEccCCCCCceeEEEEEecCCC----CchhhhHHhhh
Q psy7848 698 VITVWDKDYGKSNDYLGCLELCCNSK----GDRLRHWVDMM 734 (754)
Q Consensus 698 ~ItV~D~d~~~~ddfLG~v~L~l~s~----ge~~~hW~~ll 734 (754)
.|.|||++.++.+++||.+.|++... +...+.|++|.
T Consensus 77 ~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 117 (132)
T cd04014 77 ELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE 117 (132)
T ss_pred EEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence 99999999988999999999998752 23345555553
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1) | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.4e-14 Score=138.51 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=95.7
Q ss_pred EEEEEEEecC--CCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc------ccCcceEEE
Q psy7848 487 LHVTLHRAKG--LRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET------DLSLQSLHI 558 (754)
Q Consensus 487 L~VtIi~Arn--L~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~------el~~~~L~~ 558 (754)
..++|+.|++ |+..+.++.+||||++++..+.....+.||+++++|+||+|||.|.|. |... .+....|.|
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~-I~~~~~~~~R~l~~~~L~~ 82 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLN-INRKHRSFQRVFKRHGLKF 82 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEE-eccccchhhhhccCCcEEE
Confidence 4556666666 778888889999999998432334579999999999999999999995 6544 355688999
Q ss_pred EEeeCCCC-CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 559 LVLDDDKY-GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 559 sV~D~d~~-g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
+|||++.+ .. ++||++.|+|..+........+++|.. ......|+|.|.+..-.
T Consensus 83 ~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-------------~~k~~Gg~l~v~ir~r~ 138 (155)
T cd08690 83 EVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-------------GRKATGGKLEVKVRLRE 138 (155)
T ss_pred EEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-------------CCCCcCCEEEEEEEecC
Confidence 99999986 33 999999999999977766555666532 11356688888877643
|
Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha |
| >cd04046 C2_Calpain C2 domain present in Calpain proteins | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.9e-15 Score=138.28 Aligned_cols=99 Identities=19% Similarity=0.329 Sum_probs=84.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..|.|.|++|++|...+.+|.+||||++++. ..+++|+++++++||+|||.|.|.+.. ....|.|+|||++.+
T Consensus 3 ~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~----~~~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~~~ 75 (126)
T cd04046 3 VVTQVHVHSAEGLSKQDSGGGADPYVIIKCE----GESVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSNLL 75 (126)
T ss_pred EEEEEEEEeCcCCCCCCCCCCcCccEEEEEC----CEEEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECCCC
Confidence 5689999999999999999999999999983 457899999999999999999998752 257899999999987
Q ss_pred CCCceeEEEEEecCCCCchhhhHHhhh
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWVDMM 734 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~~ll 734 (754)
+ |+|||.+.+++........+|+.|.
T Consensus 76 ~-d~~lG~~~~~l~~~~~~~~~~~~l~ 101 (126)
T cd04046 76 C-DEFLGQATLSADPNDSQTLRTLPLR 101 (126)
T ss_pred C-CCceEEEEEecccCCCcCceEEEcc
Confidence 5 8999999999987655555666664
|
A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic |
| >cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.8e-14 Score=135.40 Aligned_cols=115 Identities=24% Similarity=0.366 Sum_probs=94.1
Q ss_pred CCEEEEEEEEecCCCCCCCC----------CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCc
Q psy7848 484 TCSLHVTLHRAKGLRAMDIH----------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSL 553 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~----------g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~ 553 (754)
.|.|.|+|++|++|...+.. +.+||||++.+.+ ....+|+++.+|.||.|||+|.|+ +. ..
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~-v~----~~ 73 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDD----THIGKTSTKPKTNSPVWNEEFTTE-VH----NG 73 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECC----EEEeEEeEcCCCCCCCcceeEEEE-cC----CC
Confidence 47799999999999988863 6799999999952 245789999999999999999995 43 24
Q ss_pred ceEEEEEeeCCCCCC-ccceeeeecCcccCC--CCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 554 QSLHILVLDDDKYGH-DFLGEARFPLNRLRP--HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 554 ~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~--~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
..|.|.|||++.++. ++||++.++|.++.. ......|++|. ..|+|+|.+.|..
T Consensus 74 ~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~------------------~~G~l~l~~~~~~ 130 (132)
T cd04014 74 RNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE------------------PQGKLHVKIELKG 130 (132)
T ss_pred CEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc------------------CCcEEEEEEEEec
Confidence 789999999998877 999999999999886 34455566552 3699999988754
|
A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.3e-14 Score=136.32 Aligned_cols=84 Identities=20% Similarity=0.233 Sum_probs=71.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
+.|.|.|++|++|...+ ..||||.|.+ +..+.+|+++++ .||.|||+|.|.+. +. +..|.|.|||++.+
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~----g~~k~kT~v~~~-~nP~WnE~F~F~~~--~~-~~~L~v~V~dkd~~ 70 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV----QNVKSTTIAVRG-SQPCWEQDFMFEIN--RL-DLGLVIELWNKGLI 70 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE----CCEEeEeeECCC-CCCceeeEEEEEEc--CC-CCEEEEEEEeCCCc
Confidence 57999999999996543 4589999999 446889999877 49999999999984 33 34599999999976
Q ss_pred CCCceeEEEEEecCCC
Q psy7848 708 KSNDYLGCLELCCNSK 723 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ 723 (754)
.|||||.+.|+|.+.
T Consensus 71 -~DD~lG~v~i~L~~v 85 (127)
T cd08394 71 -WDTLVGTVWIPLSTI 85 (127)
T ss_pred -CCCceEEEEEEhHHc
Confidence 799999999999863
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.56 E-value=3e-14 Score=134.28 Aligned_cols=119 Identities=20% Similarity=0.274 Sum_probs=96.0
Q ss_pred EEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCC-c
Q psy7848 491 LHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-D 569 (754)
Q Consensus 491 Ii~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~-d 569 (754)
|+.|++|+. ..+.+||||+|++.. ..++|+++.++.||+|||+|.|. +.........|.|.|||++..+. +
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~~~-----~~~kT~v~~~~~nP~Wne~f~f~-~~~~~~~~~~l~~~v~d~~~~~~d~ 73 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTFRG-----VKKKTRVLENELNPVWNETFEWP-LAGSPDPDESLEIVVKDYEKVGRNR 73 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEECC-----EeeecceeCCCcCCcccceEEEE-eCCCcCCCCEEEEEEEECCCCCCCc
Confidence 789999998 678899999999943 57899999999999999999995 43322456899999999999877 9
Q ss_pred cceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccccccc
Q psy7848 570 FLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRA 629 (754)
Q Consensus 570 fLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~g~ 629 (754)
+||++.++|.++..+.....|++|.. . ......|+|++.+.|.|..+.
T Consensus 74 ~iG~~~~~l~~l~~~~~~~~~~~L~~------~------~~~~~~~~l~l~~~~~~~~~~ 121 (127)
T cd08373 74 LIGSATVSLQDLVSEGLLEVTEPLLD------S------NGRPTGATISLEVSYQPPDGA 121 (127)
T ss_pred eEEEEEEEhhHcccCCceEEEEeCcC------C------CCCcccEEEEEEEEEeCCCCc
Confidence 99999999999987766666666642 1 112346999999999987643
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=134.92 Aligned_cols=98 Identities=24% Similarity=0.385 Sum_probs=82.1
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|.|.|++|+||+.++.+|.+||||++++. +...++|.++++++||.|||+|.|.+.. ...|.|+|||++.++
T Consensus 1 ~l~v~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~ 73 (123)
T cd08382 1 KVRLTVLCADGLAKRDLFRLPDPFAVITVD---GGQTHSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFK 73 (123)
T ss_pred CeEEEEEEecCCCccCCCCCCCcEEEEEEC---CccceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCC
Confidence 378999999999999999999999999993 2458899999999999999999999963 579999999999877
Q ss_pred C--CceeEEEEEecCCCC---chhhhHHhh
Q psy7848 709 S--NDYLGCLELCCNSKG---DRLRHWVDM 733 (754)
Q Consensus 709 ~--ddfLG~v~L~l~s~g---e~~~hW~~l 733 (754)
+ ++|||.+.|++...- .....|+.|
T Consensus 74 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l 103 (123)
T cd08382 74 KKDQGFLGCVRIRANAVLPLKDTGYQRLDL 103 (123)
T ss_pred CCCCceEeEEEEEHHHccccCCCccceeEe
Confidence 5 579999999988622 123446555
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-14 Score=135.78 Aligned_cols=89 Identities=31% Similarity=0.395 Sum_probs=76.6
Q ss_pred eccccccccccCCCCCCCCceEEEEecCCC--Cc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC--
Q psy7848 632 VNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY-- 706 (754)
Q Consensus 632 V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~--~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~-- 706 (754)
...++|++|+.++..|.+||||+|++.+.. .. ..++|.++++|+||+|||+|.|.+...+ ...|.|+|||++.
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~--~~~l~~~V~d~d~~~ 81 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEE--VQKLRFEVYDVDSKS 81 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEe--eeEEEEEEEEecCCc
Confidence 356899999999999999999999998654 22 3789999999999999999999875433 3579999999997
Q ss_pred --CCCCceeEEEEEecCC
Q psy7848 707 --GKSNDYLGCLELCCNS 722 (754)
Q Consensus 707 --~~~ddfLG~v~L~l~s 722 (754)
++++++||.+.+++..
T Consensus 82 ~~~~~~d~iG~~~i~l~~ 99 (120)
T cd04048 82 KDLSDHDFLGEAECTLGE 99 (120)
T ss_pred CCCCCCcEEEEEEEEHHH
Confidence 8899999999999985
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.55 E-value=1e-14 Score=133.81 Aligned_cols=100 Identities=24% Similarity=0.310 Sum_probs=80.1
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCC--cceeeeeeecCCCCCccceeEEEEeecCccC----CCeEEEEEEE
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWD 703 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~--k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~----~~~L~ItV~D 703 (754)
+.+.+++|++|+.++..|.+||||+|++.+..+ ...++|+++++++||+|| +|.|.+. ++. ...|.|+|||
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~--~l~~~~~~~~l~~~V~d 78 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQ--KLCNGDYDRPIKIEVYD 78 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHH--HhcCCCcCCEEEEEEEE
Confidence 356677999999999999999999999876532 237999999999999999 6777642 332 4799999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHh
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVD 732 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ 732 (754)
++.+++|++||.+.+++...-.....++.
T Consensus 79 ~d~~~~d~~iG~~~~~l~~l~~~~~~~~~ 107 (110)
T cd04047 79 YDSSGKHDLIGEFETTLDELLKSSPLEFE 107 (110)
T ss_pred eCCCCCCcEEEEEEEEHHHHhcCCCceEE
Confidence 99999999999999999865433333333
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd04011 C2B_Ferlin C2 domain second repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-14 Score=130.99 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=80.2
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEee-eeccccCcceEEEEEe
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS-VSETDLSLQSLHILVL 561 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~-I~~~el~~~~L~~sV~ 561 (754)
....|+|+|++|++|. .+.+||||+|.+.+ .+.+|+++.++.||.|||+|.|.. .+..++....|.|.||
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~ 72 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVGG-----QKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVY 72 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEECC-----EeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEE
Confidence 4567999999999998 57899999999964 567899999999999999999953 2234455678999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCCCc
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPHIS 586 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~~~ 586 (754)
|++.++. ++||++.|+|.++.....
T Consensus 73 d~~~~~~~~~iG~~~i~l~~v~~~~~ 98 (111)
T cd04011 73 DSRSLRSDTLIGSFKLDVGTVYDQPD 98 (111)
T ss_pred cCcccccCCccEEEEECCccccCCCC
Confidence 9999887 999999999999866533
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme |
| >cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.8e-14 Score=131.82 Aligned_cols=117 Identities=26% Similarity=0.407 Sum_probs=91.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|+|+|++|++|+.++..+.+||||++++.+ ...++|+++.+++||.|||.|.|. +.. ...|.|.|||++.+
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~----~~~~kT~v~~~t~nP~Wne~f~~~-~~~----~~~l~i~V~d~~~~ 72 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITVDG----GQTHSTDVAKKTLDPKWNEHFDLT-VGP----SSIITIQVFDQKKF 72 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEECC----ccceEccEEcCCCCCcccceEEEE-eCC----CCEEEEEEEECCCC
Confidence 789999999999999889999999999953 367899999999999999999995 433 47999999999987
Q ss_pred CC---ccceeeeecCcccCCCCcc-ceEeecccCCCCCccccccccccccccceeEEee
Q psy7848 567 GH---DFLGEARFPLNRLRPHISR-DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621 (754)
Q Consensus 567 g~---dfLGev~I~L~~L~~~~~~-~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL 621 (754)
+. +|||++.|++.++...... ..|++|.. ... .......|+|.+.+
T Consensus 73 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~------~~~---~~~~~~~G~v~~~~ 122 (123)
T cd08382 73 KKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRK------LKK---SDNLSVRGKIVVSL 122 (123)
T ss_pred CCCCCceEeEEEEEHHHccccCCCccceeEeec------CCC---CCCceEeeEEEEEe
Confidence 63 6999999999998754332 34444432 110 01234578888775
|
A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-14 Score=133.92 Aligned_cols=107 Identities=21% Similarity=0.285 Sum_probs=84.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCc---------ceeeeeeecCCCCCcc-ceeEEEEeecCccCCCeEEE
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---------RKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVI 699 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k---------~k~KT~v~kkTlNP~w-NEtF~F~V~~~dL~~~~L~I 699 (754)
+.|.+++|+||+ ++..|.+||||++++.++... .++||.++++++||+| ||+|.|.+.. +..|.|
T Consensus 3 ~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~v 77 (137)
T cd08691 3 FSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP----TDVLEI 77 (137)
T ss_pred EEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC----CCEEEE
Confidence 568899999998 677899999999999765432 4799999999999999 9999999853 358999
Q ss_pred EEEEccCCCC---CceeEEEEEecCCCCchhhhHHhhhcCC-CcceeeEEeecCCC
Q psy7848 700 TVWDKDYGKS---NDYLGCLELCCNSKGDRLRHWVDMMKYP-DHKHEGIHNLSIKP 751 (754)
Q Consensus 700 tV~D~d~~~~---ddfLG~v~L~l~s~ge~~~hW~~ll~~P-~~~ie~Wh~L~~~~ 751 (754)
+|||++..+. +++||.+.|++.+ +++.+ ......|++|..+-
T Consensus 78 ~V~D~~~~~~~~~~d~lG~~~i~l~~----------l~~~~~~~~~~~~~~l~k~~ 123 (137)
T cd08691 78 EVKDKFAKSRPIIRRFLGKLSIPVQR----------LLERHAIGDQELSYTLGRRT 123 (137)
T ss_pred EEEecCCCCCccCCceEEEEEEEHHH----------hcccccCCceEEEEECCcCC
Confidence 9999875443 7999999999875 22222 22356777776554
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins | Back alignment and domain information |
|---|
Probab=99.53 E-value=4e-14 Score=129.11 Aligned_cols=88 Identities=32% Similarity=0.394 Sum_probs=77.5
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+..+..+.+||||+|++.+ ..++|+++.+|.||+|||.|.|. +.. .....|.|.|||++.
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~Wne~f~f~-v~~--~~~~~l~v~v~d~~~- 72 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTVGK-----TTQKSKVKERTNNPVWEEGFTFL-VRN--PENQELEIEVKDDKT- 72 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEECC-----EEEeCccccCCCCCcccceEEEE-eCC--CCCCEEEEEEEECCC-
Confidence 889999999999999889999999999953 78899999999999999999995 433 234689999999987
Q ss_pred CCccceeeeecCcccCCC
Q psy7848 567 GHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~ 584 (754)
+++||++.|+|.++...
T Consensus 73 -~~~iG~~~i~l~~l~~~ 89 (105)
T cd04050 73 -GKSLGSLTLPLSELLKE 89 (105)
T ss_pred -CCccEEEEEEHHHhhcc
Confidence 68999999999998754
|
Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd08373 C2A_Ferlin C2 domain first repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-14 Score=134.28 Aligned_cols=100 Identities=22% Similarity=0.208 Sum_probs=82.6
Q ss_pred cccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCcee
Q psy7848 634 LIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYL 713 (754)
Q Consensus 634 V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfL 713 (754)
|+.|+||+. ..|.+||||+|++ +..+++|++++++.||+|||+|.|.+.........|.|+|||++.+++|++|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~----~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~i 75 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTF----RGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLI 75 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEE----CCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceE
Confidence 789999988 6788999999999 3447899999999999999999999864434578999999999999999999
Q ss_pred EEEEEecCCC--CchhhhHHhhhcCCCc
Q psy7848 714 GCLELCCNSK--GDRLRHWVDMMKYPDH 739 (754)
Q Consensus 714 G~v~L~l~s~--ge~~~hW~~ll~~P~~ 739 (754)
|.+.|++... +.....|+.|....+.
T Consensus 76 G~~~~~l~~l~~~~~~~~~~~L~~~~~~ 103 (127)
T cd08373 76 GSATVSLQDLVSEGLLEVTEPLLDSNGR 103 (127)
T ss_pred EEEEEEhhHcccCCceEEEEeCcCCCCC
Confidence 9999999863 3445567777644343
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.52 E-value=1e-13 Score=130.95 Aligned_cols=114 Identities=31% Similarity=0.470 Sum_probs=88.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|.|+|++|++|+..|..+.+||||+|++.+ ...+|+++.+++||+|||.|.|. +... ...|.|.|||+|.
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~-----~~~kT~~v~~t~~P~Wne~f~f~-~~~~---~~~l~i~v~d~d~ 72 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGK-----TKKRTKTIPQNLNPVWNEKFHFE-CHNS---SDRIKVRVWDEDD 72 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEECC-----EeeecceecCCCCCccceEEEEE-ecCC---CCEEEEEEEECCC
Confidence 5899999999999999889999999999843 56799999999999999999984 3221 3689999999985
Q ss_pred C-----------CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEee
Q psy7848 566 Y-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621 (754)
Q Consensus 566 ~-----------g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL 621 (754)
. +. ++||++.+++.++... ...|+.|... . .....+|+|++.+
T Consensus 73 ~~~~~~~~~~~~~~~~~iG~~~i~l~~~~~~--~~~w~~L~~~------~-----~~~~~~G~i~~~~ 127 (127)
T cd04027 73 DIKSRLKQKFTRESDDFLGQTIIEVRTLSGE--MDVWYNLEKR------T-----DKSAVSGAIRLHI 127 (127)
T ss_pred CcccccceeccccCCCcceEEEEEhHHccCC--CCeEEECccC------C-----CCCcEeEEEEEEC
Confidence 3 34 9999999999987543 3455555421 1 1134689998764
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.5e-14 Score=130.99 Aligned_cols=84 Identities=26% Similarity=0.264 Sum_probs=72.5
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCC-cceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEc----
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK---- 704 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~---- 704 (754)
|.|.|++|+||. |.+||||++++.+... ..+.||+++++|+||+|||+|.|.+. ....|.|.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~----~s~~L~~~v~d~~~~~ 71 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE----GSQTLRILCYEKCYSK 71 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC----CCCEEEEEEEEccccc
Confidence 679999999995 5699999999976544 34899999999999999999999985 256999999998
Q ss_pred ---cCCCCCceeEEEEEecCC
Q psy7848 705 ---DYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 705 ---d~~~~ddfLG~v~L~l~s 722 (754)
|.++.|++||...|.|+.
T Consensus 72 ~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 72 VKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred ccccccCcccEEEEEEEEECH
Confidence 577889999998888864
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=132.26 Aligned_cols=99 Identities=23% Similarity=0.334 Sum_probs=82.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+.. |.+||||++++. +...++|+++++ +||.|||+|.|.+...++....|.|.|||++....
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~---~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~ 74 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD---QVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDR 74 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC---CEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCC
Confidence 78999999999876 789999999993 234689999988 99999999999998777666789999999998878
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhc
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMK 735 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~ 735 (754)
+.++|.+.|+....+...++|++|..
T Consensus 75 ~~~~g~v~l~~~~~~~~~~~w~~L~~ 100 (117)
T cd08383 75 DIVIGKVALSKLDLGQGKDEWFPLTP 100 (117)
T ss_pred eeEEEEEEecCcCCCCcceeEEECcc
Confidence 88999988887666666666666653
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.6e-14 Score=134.62 Aligned_cols=106 Identities=30% Similarity=0.392 Sum_probs=86.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec------------cccCcc
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE------------TDLSLQ 554 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~------------~el~~~ 554 (754)
|.|.|++|++|+.+ ..+.+||||+|++..+ .....++|+++.++.||.|||.|.|..... .++...
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~-~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~ 78 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYS-SKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKS 78 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecC-CcCCeeccceeeCCCCCCcceEEEEEcccccccccccccccccccccc
Confidence 67999999999998 7889999999999753 234778999999999999999999963332 244668
Q ss_pred eEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 555 SLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 555 ~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.|.|.|||++.++. +|||++.|+|.++........|+.|.
T Consensus 79 ~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~ 119 (137)
T cd08675 79 ELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119 (137)
T ss_pred EEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecC
Confidence 99999999999876 99999999999987554444444443
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin |
| >cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.6e-14 Score=131.26 Aligned_cols=103 Identities=29% Similarity=0.419 Sum_probs=84.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecC-CCCCeeceeEEEeeeecccc-CcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDL-SLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~-TlNP~WnE~f~F~~I~~~el-~~~~L~~sV~D 562 (754)
|.|.|+|++|++|+..+..+.+||||+|.+.. ...+|+++.+ +.||+|||.|.|. +..... ....|.|.|||
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~-----~~~~T~~~~~~t~nP~Wne~f~f~-v~~~~~~~~~~l~v~V~d 74 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRT-----QERKSKVAKGDGRNPEWNEKFKFT-VEYPGWGGDTKLILRIMD 74 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEECC-----EeeeeeEcCCCCCCCcccceEEEE-ecCcccCCCCEEEEEEEE
Confidence 57999999999999998889999999999843 5678888874 8999999999995 443322 34789999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++.++. ++||++.|+|.++........|+.|
T Consensus 75 ~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l 106 (124)
T cd04049 75 KDNFSDDDFIGEATIHLKGLFEEGVEPGTAEL 106 (124)
T ss_pred CccCCCCCeEEEEEEEhHHhhhCCCCcCceEe
Confidence 999877 9999999999999776555445444
|
In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-13 Score=127.88 Aligned_cols=88 Identities=38% Similarity=0.601 Sum_probs=78.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|+..+..|.+||||+|++.+ ...++|+++.+++||.|||+|.|.+... ....|.|+|||++..+.
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~---~~~~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~~~ 75 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG---EKVFKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRGGK 75 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC---CcceeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCCCC
Confidence 578999999999999889999999999942 3468999999999999999999998632 46789999999999989
Q ss_pred CceeEEEEEecCC
Q psy7848 710 NDYLGCLELCCNS 722 (754)
Q Consensus 710 ddfLG~v~L~l~s 722 (754)
+++||.+.+++..
T Consensus 76 ~~~iG~~~~~l~~ 88 (115)
T cd04040 76 DDLLGSAYIDLSD 88 (115)
T ss_pred CCceEEEEEEHHH
Confidence 9999999999875
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.2e-14 Score=130.71 Aligned_cols=91 Identities=19% Similarity=0.288 Sum_probs=78.4
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCcc--CCCeEEEEEEEcc
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITEL--SKQTLVITVWDKD 705 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL--~~~~L~ItV~D~d 705 (754)
.|.|.|++|++|+..+..+.+||||+|++.+ ..+++|++.. ++.||.|||.|.|.+....+ ....|.|+|||++
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~---~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~ 77 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP---SHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCER 77 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC---CcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECC
Confidence 3789999999999999889999999999953 2478898865 58999999999999865432 3578999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy7848 706 YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s 722 (754)
.++.|++||.+.|++..
T Consensus 78 ~~~~~~~lG~~~i~l~~ 94 (125)
T cd04051 78 PSLGDKLIGEVRVPLKD 94 (125)
T ss_pred CCCCCCcEEEEEEEHHH
Confidence 98899999999999875
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >cd04018 C2C_Ferlin C2 domain third repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.50 E-value=5e-14 Score=137.06 Aligned_cols=92 Identities=23% Similarity=0.390 Sum_probs=77.8
Q ss_pred EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 486 SLHVTLHRAKGLRAMDIHG--------------TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g--------------~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
.|.|+|++|++|+.+|..+ .+||||+|.+.+ .+.+|+++++++||+|||+|.|. +.....
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g-----~~~kT~v~~~t~nPvWNE~f~f~-v~~p~~ 74 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAG-----QKVKTSVKKNSYNPEWNEQIVFP-EMFPPL 74 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECC-----EeeecceEcCCCCCCcceEEEEE-eeCCCc
Confidence 3789999999999998543 689999999964 56799999999999999999995 322222
Q ss_pred CcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 552 SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
...|.|+|||+|..+. ++||.+.|+|.++...
T Consensus 75 -~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~ 107 (151)
T cd04018 75 -CERIKIQIRDWDRVGNDDVIGTHFIDLSKISNS 107 (151)
T ss_pred -CCEEEEEEEECCCCCCCCEEEEEEEeHHHhccC
Confidence 3689999999999876 9999999999998764
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.4e-14 Score=136.12 Aligned_cols=98 Identities=38% Similarity=0.608 Sum_probs=82.3
Q ss_pred EEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC------------------------ceEEEeeeecCCCC
Q psy7848 479 TYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT------------------------SHRLRTKTCLRTIN 534 (754)
Q Consensus 479 ~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~------------------------~~~~rTkvi~~TlN 534 (754)
.+.+..+.|.|+|++|+||..+|..|.+||||+|.+.+.... ....+|+++.+++|
T Consensus 22 ~~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tln 101 (153)
T cd08676 22 EAEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLN 101 (153)
T ss_pred hcCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCC
Confidence 344566889999999999999999999999999999753211 13589999999999
Q ss_pred CeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcccC
Q psy7848 535 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 582 (754)
Q Consensus 535 P~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~ 582 (754)
|.|||+|.|. + .++....|.|.|||++ ++|||++.|++.++.
T Consensus 102 P~WnE~F~f~-v--~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~ 143 (153)
T cd08676 102 PVWNETFRFE-V--EDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLP 143 (153)
T ss_pred CccccEEEEE-e--ccCCCCEEEEEEEecC---CCeEEEEEEEHHHhC
Confidence 9999999994 3 3334578999999998 789999999999987
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy |
| >cd04032 C2_Perforin C2 domain of Perforin | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=131.04 Aligned_cols=91 Identities=26% Similarity=0.296 Sum_probs=77.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
-+.|.|+|++|++|+. +..+.+||||+|++.+ .+++|++++++.||+|||+|.|..+... ....|.|+|||+
T Consensus 27 ~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~-----~~~kT~vi~~t~nPvWNE~F~f~~~~~~--~~~~L~v~V~D~ 98 (127)
T cd04032 27 LATLTVTVLRATGLWG-DYFTSTDGYVKVFFGG-----QEKRTEVIWNNNNPRWNATFDFGSVELS--PGGKLRFEVWDR 98 (127)
T ss_pred cEEEEEEEEECCCCCc-CcCCCCCeEEEEEECC-----ccccCceecCCCCCcCCCEEEEecccCC--CCCEEEEEEEeC
Confidence 4678999999999984 6778899999999953 4889999999999999999998532221 357999999999
Q ss_pred CCCCC-ccceeeeecCcccC
Q psy7848 564 DKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~ 582 (754)
|.++. ++||++.++|....
T Consensus 99 d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 99 DNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred CCCCCCCeeEEEEEEecCCc
Confidence 99977 99999999999664
|
Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few |
| >cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-13 Score=127.81 Aligned_cols=90 Identities=26% Similarity=0.348 Sum_probs=78.6
Q ss_pred cceeeccccccccccCC-CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|.|.|++|+||+..+ ..+.+||||++.+..+ ...++|+++.+++||.|||.|.|.+. .....|.|+|||++.
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~--~~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~ 76 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR--RELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFND 76 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC--CcceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCC
Confidence 67899999999999765 4567999999999542 35899999999999999999999986 235789999999999
Q ss_pred CCCCceeEEEEEecCC
Q psy7848 707 GKSNDYLGCLELCCNS 722 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s 722 (754)
.+.|++||.+.+++..
T Consensus 77 ~~~d~~iG~~~~~l~~ 92 (124)
T cd04044 77 KRKDKLIGTAEFDLSS 92 (124)
T ss_pred CCCCceeEEEEEEHHH
Confidence 9899999999999876
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.5e-13 Score=129.35 Aligned_cols=92 Identities=28% Similarity=0.342 Sum_probs=77.8
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK 565 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~ 565 (754)
.|+|+|++|++|+.+|..+.+||||+|++.+. ....+|.++.+++||+|||+|.|. +. ......|.|+|||+|.
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~---~~~~kT~~v~~t~nP~Wne~f~f~-~~--~~~~~~L~~~V~d~d~ 74 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKK---KINDRDNYIPNTLNPVFGKMFELE-AT--LPGNSILKISVMDYDL 74 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECCe---eccceeeEEECCCCCccceEEEEE-ec--CCCCCEEEEEEEECCC
Confidence 37899999999999999999999999999642 234678889999999999999984 32 2234789999999999
Q ss_pred CCC-ccceeeeecCcccCC
Q psy7848 566 YGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 566 ~g~-dfLGev~I~L~~L~~ 583 (754)
++. ++||++.|+|.+...
T Consensus 75 ~~~dd~iG~~~i~l~~~~~ 93 (124)
T cd04037 75 LGSDDLIGETVIDLEDRFF 93 (124)
T ss_pred CCCCceeEEEEEeeccccc
Confidence 877 999999999997754
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04048 C2A_Copine C2 domain first repeat in Copine | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-13 Score=128.03 Aligned_cols=102 Identities=26% Similarity=0.314 Sum_probs=84.2
Q ss_pred EEEEEecCCCCCCCCCCCCcEEEEEEeCCC--CCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCC-
Q psy7848 489 VTLHRAKGLRAMDIHGTSDPFCKLNLVPLT--KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDK- 565 (754)
Q Consensus 489 VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~--~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~- 565 (754)
...++|++|+..+..+.+||||+|++.+.. .....++|+++++++||+|||+|.|. +.... ...|.|+|||+|.
T Consensus 4 ~~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~-~~~~~--~~~l~~~V~d~d~~ 80 (120)
T cd04048 4 ELSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVD-YYFEE--VQKLRFEVYDVDSK 80 (120)
T ss_pred EEEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEE-EEeEe--eeEEEEEEEEecCC
Confidence 456899999999999999999999998753 33457899999999999999999984 33222 3689999999997
Q ss_pred ---CCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 566 ---YGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 566 ---~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++. ++||++.+++.+|.......+++.|
T Consensus 81 ~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l 112 (120)
T cd04048 81 SKDLSDHDFLGEAECTLGEIVSSPGQKLTLPL 112 (120)
T ss_pred cCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEc
Confidence 666 9999999999999877666666666
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma |
| >cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP) | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-13 Score=131.30 Aligned_cols=90 Identities=30% Similarity=0.512 Sum_probs=79.7
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|.|+|++|+||+..+. +.+||||++.+.. ...+|+++.++.||+|||+|.|. +... ...|.|.|||++
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~-----~~~kT~vvk~t~nP~WnE~f~f~-i~~~---~~~l~~~V~D~d 71 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGN-----QKVKTRVIKKNLNPVWNEELTLS-VPNP---MAPLKLEVFDKD 71 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEECC-----EEEEeeeEcCCCCCeecccEEEE-ecCC---CCEEEEEEEECC
Confidence 679999999999999887 8899999999953 78999999999999999999995 4322 578999999999
Q ss_pred CCCC-ccceeeeecCcccCCC
Q psy7848 565 KYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~ 584 (754)
.++. ++||++.|++.++...
T Consensus 72 ~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 72 TFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred CCCCCCEEEEEEEEHHHhhhh
Confidence 9987 9999999999998654
|
ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i |
| >cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-13 Score=124.89 Aligned_cols=101 Identities=35% Similarity=0.479 Sum_probs=86.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|++|+..+..+.+||||+|.+.+ ...++|+++.++.||.|||+|.|. +... ....|.|.|||++..
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~----~~~~~T~v~~~~~~P~Wne~f~~~-~~~~--~~~~l~~~v~d~~~~ 73 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLNG----EKVFKTKTIKKTLNPVWNESFEVP-VPSR--VRAVLKVEVYDWDRG 73 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEECC----CcceeeceecCCCCCcccccEEEE-eccC--CCCEEEEEEEeCCCC
Confidence 579999999999999888999999999953 355799999999999999999984 3322 357899999999998
Q ss_pred CC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 567 GH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+. ++||++.+++.++..+.....|++|.
T Consensus 74 ~~~~~iG~~~~~l~~l~~~~~~~~~~~L~ 102 (115)
T cd04040 74 GKDDLLGSAYIDLSDLEPEETTELTLPLD 102 (115)
T ss_pred CCCCceEEEEEEHHHcCCCCcEEEEEECc
Confidence 77 99999999999998776667777764
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1) | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.5e-13 Score=129.09 Aligned_cols=93 Identities=27% Similarity=0.411 Sum_probs=77.7
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC--------ceEEEeeeecCCCCCee-ceeEEEeeeeccccCcceE
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT--------SHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSL 556 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~--------~~~~rTkvi~~TlNP~W-nE~f~F~~I~~~el~~~~L 556 (754)
.+.|++++|+||+ ++..|.+||||++.+.++... ...++|+++.+++||+| ||.|.|. +.. ...|
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~-v~~----~~~L 75 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFV-GLP----TDVL 75 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEE-cCC----CCEE
Confidence 4679999999998 777899999999999875432 35789999999999999 9999995 332 3589
Q ss_pred EEEEeeCCCCC----CccceeeeecCcccCCC
Q psy7848 557 HILVLDDDKYG----HDFLGEARFPLNRLRPH 584 (754)
Q Consensus 557 ~~sV~D~d~~g----~dfLGev~I~L~~L~~~ 584 (754)
.|+|||++..+ +++||++.|+|.+|...
T Consensus 76 ~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~ 107 (137)
T cd08691 76 EIEVKDKFAKSRPIIRRFLGKLSIPVQRLLER 107 (137)
T ss_pred EEEEEecCCCCCccCCceEEEEEEEHHHhccc
Confidence 99999987543 48999999999998755
|
NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C |
| >cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.1e-13 Score=126.98 Aligned_cols=101 Identities=18% Similarity=0.216 Sum_probs=78.8
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|+|++|++|+..+ ..||||.|.+.. .+.+|+++.+ .||+|||+|.|+ + .+.. ..|.|.|||+|
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~-----~k~kT~v~~~-~nP~WnE~F~F~-~--~~~~-~~L~v~V~dkd 68 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKVQN-----VKSTTIAVRG-SQPCWEQDFMFE-I--NRLD-LGLVIELWNKG 68 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEECC-----EEeEeeECCC-CCCceeeEEEEE-E--cCCC-CEEEEEEEeCC
Confidence 46999999999997644 459999999953 6789999887 599999999995 3 3333 44999999999
Q ss_pred CCCCccceeeeecCcccCCCCccceEeecccCCCCCcc
Q psy7848 565 KYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPRE 602 (754)
Q Consensus 565 ~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~ 602 (754)
.+.++|||++.|+|.++...... --..||+|.++
T Consensus 69 ~~~DD~lG~v~i~L~~v~~~~~~----~~~~Wy~L~~~ 102 (127)
T cd08394 69 LIWDTLVGTVWIPLSTIRQSNEE----GPGEWLTLDSE 102 (127)
T ss_pred CcCCCceEEEEEEhHHcccCCCC----CCCccEecChH
Confidence 88779999999999998765332 01346666543
|
C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi |
| >cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs) | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.8e-13 Score=122.63 Aligned_cols=115 Identities=23% Similarity=0.357 Sum_probs=85.7
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+.. +.+||||++++.. ...++|+++.+ .||.|||+|.|. +...++....|.|.|||.+..
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~----~~~~kT~~~~~-~~P~Wne~f~f~-v~~~~~~~~~l~i~v~d~~~~ 72 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLDQ----VEVARTKTVEK-LNPFWGEEFVFD-DPPPDVTFFTLSFYNKDKRSK 72 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEECC----EEeEecceEEC-CCCcccceEEEe-cCCccccEEEEEEEEEecccC
Confidence 78999999999976 7899999999953 24578999998 999999999994 565555567899999998876
Q ss_pred CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 567 GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
.. .++|.+.|....+ +...+.|++|. +... .....|+|+|.+.|
T Consensus 73 ~~~~~~g~v~l~~~~~--~~~~~~w~~L~------~~~~-----~~~~~G~l~l~~~~ 117 (117)
T cd08383 73 DRDIVIGKVALSKLDL--GQGKDEWFPLT------PVDP-----DSEVQGSVRLRARY 117 (117)
T ss_pred CCeeEEEEEEecCcCC--CCcceeEEECc------cCCC-----CCCcCceEEEEEEC
Confidence 65 7777766554433 33444455543 2211 13578999999887
|
RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 |
| >cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.8e-13 Score=125.93 Aligned_cols=99 Identities=24% Similarity=0.323 Sum_probs=83.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
|.|.|+|++|++|+..+..+.+||||+|++.. ....+|+++.++.||.|||.|.|+ +... ...|.|+|||++
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~----~~~~kT~~~~~t~~P~Wne~f~~~-v~~~---~~~L~v~v~d~~ 72 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNG----IVKGRTVTISNTLNPVWDEVLYVP-VTSP---NQKITLEVMDYE 72 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEECC----EEeeceeEECCCcCCccCceEEEE-ecCC---CCEEEEEEEECC
Confidence 57999999999999999889999999999842 357899999999999999999884 3322 368999999999
Q ss_pred CCCC-ccceeeeecCcccCCCCccceEee
Q psy7848 565 KYGH-DFLGEARFPLNRLRPHISRDLCLN 592 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~~~~~~~~~ 592 (754)
.++. ++||++.++|.++... ..+.|+.
T Consensus 73 ~~~~d~~IG~~~~~l~~l~~~-~~~~~~~ 100 (120)
T cd04045 73 KVGKDRSLGSVEINVSDLIKK-NEDGKYV 100 (120)
T ss_pred CCCCCCeeeEEEEeHHHhhCC-CCCceEE
Confidence 9887 8999999999998765 3333333
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-13 Score=129.34 Aligned_cols=93 Identities=29% Similarity=0.413 Sum_probs=80.9
Q ss_pred ceeeccccccccccCC--CCC--CCCceEEEEecCCCCcceeeeeeecCCCC--CccceeEEEEeec-------------
Q psy7848 629 ALIVNLIKCTNLIPMD--SNG--FSDPFIKLYLKPDLHKRKYKTGVKWKTLN--PIFNEEFAIETKI------------- 689 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d--~~G--~sDPYVKV~L~~~~~k~k~KT~v~kkTlN--P~wNEtF~F~V~~------------- 689 (754)
.|+|.|++|+|++.++ ..| .+|||||++|.+. ...+++|.|.++++| |.||+.|.|++..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~-~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~ 79 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGL-EEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKE 79 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccC-cccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeec
Confidence 3789999999976544 366 4999999999865 345899999999999 9999999999776
Q ss_pred --------CccCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 690 --------TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 690 --------~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
+.+....|.|+|||+|.+++|++||.++|++..
T Consensus 80 ~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~ 120 (133)
T cd08374 80 HFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSI 120 (133)
T ss_pred cccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhh
Confidence 567789999999999999999999999999885
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd04047 C2B_Copine C2 domain second repeat in Copine | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-13 Score=122.65 Aligned_cols=99 Identities=25% Similarity=0.313 Sum_probs=79.9
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEeeeecCCCCCeeceeEEEeeeeccccC----cceEEEEEe
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS----LQSLHILVL 561 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~----~~~L~~sV~ 561 (754)
+.+.+++|++|+.+|..+.+||||+|++.+.. .....++|+++++++||+|| +|.|. ..++. ...|.|+||
T Consensus 2 ~~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~---~~~l~~~~~~~~l~~~V~ 77 (110)
T cd04047 2 VVELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIP---LQKLCNGDYDRPIKIEVY 77 (110)
T ss_pred EEEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEE---HHHhcCCCcCCEEEEEEE
Confidence 34667899999999999999999999997643 33457899999999999999 67663 33332 479999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCCCccce
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPHISRDL 589 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~~~~~~ 589 (754)
|++.+++ ++||++.+++.+|...+..++
T Consensus 78 d~d~~~~d~~iG~~~~~l~~l~~~~~~~~ 106 (110)
T cd04047 78 DYDSSGKHDLIGEFETTLDELLKSSPLEF 106 (110)
T ss_pred EeCCCCCCcEEEEEEEEHHHHhcCCCceE
Confidence 9999987 999999999999975544433
|
There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom |
| >cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.7e-13 Score=125.60 Aligned_cols=96 Identities=27% Similarity=0.379 Sum_probs=80.2
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeecccc--CcceEEEEEee
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDL--SLQSLHILVLD 562 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el--~~~~L~~sV~D 562 (754)
.|.|+|++|++|+..+..+.+||||+|++.+ ..+.+|+++. ++.||.|||.|.|. +....+ ....|.|.|||
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~----~~~~~T~~~~~~~~~P~Wne~f~f~-v~~~~~~~~~~~l~~~v~d 75 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDP----SHKQSTPVDRDGGTNPTWNETLRFP-LDERLLQQGRLALTIEVYC 75 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEECC----CcccccccccCCCCCCCCCCEEEEE-cChHhcccCccEEEEEEEE
Confidence 3889999999999999889999999999964 2567898875 58999999999994 444421 35789999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCc
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHIS 586 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~ 586 (754)
++.++. ++||++.|+|.++.....
T Consensus 76 ~~~~~~~~~lG~~~i~l~~l~~~~~ 100 (125)
T cd04051 76 ERPSLGDKLIGEVRVPLKDLLDGAS 100 (125)
T ss_pred CCCCCCCCcEEEEEEEHHHhhcccC
Confidence 998776 999999999999886644
|
SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.8e-13 Score=156.61 Aligned_cols=125 Identities=21% Similarity=0.326 Sum_probs=101.5
Q ss_pred CCEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEEeCCCCCc
Q psy7848 484 TCSLHVTLHRAKGLRAMDI------------------------------------------HGTSDPFCKLNLVPLTKTS 521 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~------------------------------------------~g~sDPYVkv~Llp~~~~~ 521 (754)
.|.|.|+|.+|++|+.||. .+.+||||+|.|.. .
T Consensus 13 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~----~ 88 (868)
T PLN03008 13 HGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQ----A 88 (868)
T ss_pred ecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECC----c
Confidence 4889999999999986432 23679999999942 3
Q ss_pred eEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCc
Q psy7848 522 HRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 601 (754)
Q Consensus 522 ~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~ 601 (754)
...||+++.++.||+|||+|.|+ +... ...|.|.|||+|.++.++||++.|||.+|..+...+.|++|.....
T Consensus 89 rv~RTrVi~n~~NPvWNE~F~f~-vah~---~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~--- 161 (868)
T PLN03008 89 TLARTRVLKNSQEPLWDEKFNIS-IAHP---FAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASG--- 161 (868)
T ss_pred ceeeEEeCCCCCCCCcceeEEEE-ecCC---CceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCC---
Confidence 56799999999999999999995 4442 3689999999999999999999999999999888888888864211
Q ss_pred cccccccccccccceeEEeeecccc
Q psy7848 602 EEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 602 ~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
......|+|+|+|.|.|.
T Consensus 162 -------kp~k~~~kl~v~lqf~pv 179 (868)
T PLN03008 162 -------KPPKAETAIFIDMKFTPF 179 (868)
T ss_pred -------CCCCCCcEEEEEEEEEEc
Confidence 124567899999999764
|
|
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-13 Score=125.53 Aligned_cols=104 Identities=25% Similarity=0.400 Sum_probs=84.7
Q ss_pred ceeeccccccccccCC--CCCCCCceEEEEecCCCC--cceeeeeeecCCC-CCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 629 ALIVNLIKCTNLIPMD--SNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTL-NPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d--~~G~sDPYVKV~L~~~~~--k~k~KT~v~kkTl-NP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
.|.|.|++|+||+.++ ..+..||||++++.+... ..++||+++.++. ||.|||+|.|.+...+ ...|.|+|||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~--~~~l~~~V~d 80 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPE--LAFLRFVVYD 80 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCC--eEEEEEEEEe
Confidence 6899999999999988 578899999999976543 3489999988776 9999999999987433 3579999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHhhhcC
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKY 736 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~ 736 (754)
++.. ++++||.+.+++.....+. .|+.|+..
T Consensus 81 ~~~~-~~~~iG~~~~~l~~l~~g~-~~~~l~~~ 111 (128)
T cd00275 81 EDSG-DDDFLGQACLPLDSLRQGY-RHVPLLDS 111 (128)
T ss_pred CCCC-CCcEeEEEEEEhHHhcCce-EEEEecCC
Confidence 9988 8999999999998754333 45566543
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-12 Score=125.38 Aligned_cols=126 Identities=16% Similarity=0.213 Sum_probs=93.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|.|++|++|++++ +|||.|.|.. ....||+++.++.||.|+|.|.|+... ....|.|.||+.+
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~----~~vaRT~v~~~~~nP~W~E~F~f~~~~----~~~~l~v~v~k~~ 77 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCLDK----TLYARTTSKLKTDTLFWGEHFEFSNLP----PVSVITVNLYRES 77 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEECC----EEEEEEEEEcCCCCCcceeeEEecCCC----cccEEEEEEEEcc
Confidence 67999999999999875 8999999963 355799999999999999999995221 2367999998765
Q ss_pred C-C----CCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 565 K-Y----GHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 565 ~-~----g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
. . ++++||.+.||+.++..+...+-|+++...... .+..+.......+.|+|+++|.+.
T Consensus 78 ~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~---~~~~~~~~~~~~~~lrik~rf~~~ 141 (146)
T cd04013 78 DKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGN---GKSGGKEGKGESPSIRIKARYQST 141 (146)
T ss_pred CccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCC---CccccccccCCCCEEEEEEEEEEe
Confidence 3 2 338999999999999977676667666532211 111111223556899999999654
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.8e-13 Score=122.39 Aligned_cols=83 Identities=24% Similarity=0.550 Sum_probs=69.2
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC---
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD--- 563 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~--- 563 (754)
|.|+|++|+||+ +.+||||++++.+.+....+.+|+++.+|+||+|||+|.|. +. ...+|+|.|||+
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~-l~----~s~~L~~~v~d~~~~ 70 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIE-LE----GSQTLRILCYEKCYS 70 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEE-eC----CCCEEEEEEEEcccc
Confidence 689999999996 45899999999875443478999999999999999999984 43 257999999998
Q ss_pred ----CCCCC-ccceeeeecCc
Q psy7848 564 ----DKYGH-DFLGEARFPLN 579 (754)
Q Consensus 564 ----d~~g~-dfLGev~I~L~ 579 (754)
|..+. ++||.+.|.|+
T Consensus 71 ~~~~d~~~~d~~~G~g~i~Ld 91 (118)
T cd08686 71 KVKLDGEGTDAIMGKGQIQLD 91 (118)
T ss_pred cccccccCcccEEEEEEEEEC
Confidence 45566 99988888776
|
The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr |
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-12 Score=122.64 Aligned_cols=86 Identities=26% Similarity=0.330 Sum_probs=74.4
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
.|.|.|..|+ |...+..+.+||||+|++. +..+++|+++++++||+|||+|.|.+.. ...|.|+|||++..+
T Consensus 3 ~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~---~~~~~kT~v~~~t~~P~Wne~f~~~~~~----~~~l~~~V~d~~~~~ 74 (125)
T cd04021 3 QLQITVESAK-LKSNSKSFKPDPYVEVTVD---GQPPKKTEVSKKTSNPKWNEHFTVLVTP----QSTLEFKVWSHHTLK 74 (125)
T ss_pred eEEEEEEeeE-CCCCCcCCCCCeEEEEEEC---CcccEEeeeeCCCCCCccccEEEEEeCC----CCEEEEEEEeCCCCC
Confidence 6889999998 6555668889999999993 2247899999999999999999999852 468999999999999
Q ss_pred CCceeEEEEEecCC
Q psy7848 709 SNDYLGCLELCCNS 722 (754)
Q Consensus 709 ~ddfLG~v~L~l~s 722 (754)
.+++||.+.+++..
T Consensus 75 ~~~~iG~~~i~l~~ 88 (125)
T cd04021 75 ADVLLGEASLDLSD 88 (125)
T ss_pred CCcEEEEEEEEHHH
Confidence 99999999999874
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-13 Score=113.97 Aligned_cols=85 Identities=36% Similarity=0.586 Sum_probs=75.0
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|+||+..+..+..||||++++..... ..++|.+++++.||.|||+|.|.+...+.. .|.|.|||++.++.
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~-~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~--~l~~~V~~~~~~~~ 77 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES-TKYKTKVKKNTSNPVWNEEFEFPLDDPDLD--SLSFEVWDKDSFGK 77 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC-EEEEECCBSSBSSEEEEEEEEEEESHGCGT--EEEEEEEEETSSSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee-eeeeeeeeeccccceeeeeeeeeeeccccc--ceEEEEEECCCCCC
Confidence 689999999999988888999999999975433 579999999999999999999998755554 49999999999999
Q ss_pred CceeEEEE
Q psy7848 710 NDYLGCLE 717 (754)
Q Consensus 710 ddfLG~v~ 717 (754)
|++||.+.
T Consensus 78 ~~~iG~~~ 85 (85)
T PF00168_consen 78 DELIGEVK 85 (85)
T ss_dssp EEEEEEEE
T ss_pred CCEEEEEC
Confidence 99999874
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC) | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.1e-12 Score=119.18 Aligned_cols=121 Identities=25% Similarity=0.397 Sum_probs=90.7
Q ss_pred EEEEEEEEecCCCCCC--CCCCCCcEEEEEEeCCCC-CceEEEeeeecCCC-CCeeceeEEEeeeeccccCcceEEEEEe
Q psy7848 486 SLHVTLHRAKGLRAMD--IHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTI-NPEFHEKLTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d--~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~Tl-NP~WnE~f~F~~I~~~el~~~~L~~sV~ 561 (754)
.|+|+|++|+||+..+ ..+..||||++++.+... ...+.+|+++.++. ||+|||+|.|. +... ....|.|.||
T Consensus 3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~-~~~~--~~~~l~~~V~ 79 (128)
T cd00275 3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFD-VTVP--ELAFLRFVVY 79 (128)
T ss_pred EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEE-EeCC--CeEEEEEEEE
Confidence 5899999999999988 578899999999976443 44788999988765 99999999995 3322 2357999999
Q ss_pred eCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 562 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 562 D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
|++..++++||++.++|.+|..+ ..++.|.. .. ......|.|.+.+.+
T Consensus 80 d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~------~~-----~~~~~~~~l~v~~~~ 127 (128)
T cd00275 80 DEDSGDDDFLGQACLPLDSLRQG---YRHVPLLD------SK-----GEPLELSTLFVHIDI 127 (128)
T ss_pred eCCCCCCcEeEEEEEEhHHhcCc---eEEEEecC------CC-----CCCCcceeEEEEEEE
Confidence 99988449999999999999543 23344432 10 112456888887754
|
PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking |
| >KOG1326|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.3e-13 Score=155.48 Aligned_cols=236 Identities=24% Similarity=0.269 Sum_probs=157.4
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
....+|.|++|-+|.+.|.+|.+||||+|.++. ....-++..+.+|+||+|++.|.+ .......+.|.+.|||+
T Consensus 612 ~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk---~~~~d~~~yip~tlnPVfgkmfel---~~~lp~ek~l~v~vyd~ 685 (1105)
T KOG1326|consen 612 KCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGK---KRTLDRAHYIPNTLNPVFGKMFEL---ECLLPFEKDLIVEVYDH 685 (1105)
T ss_pred eeeEEEEEEEeeeccccCCCCCcCceeeeeecc---chhhhhhhcCcCCCCcHHHHHHHh---hcccchhhcceeEEEEe
Confidence 356779999999999999999999999999964 223356778999999999999876 22333448899999999
Q ss_pred CCCCC-ccceeeeecCcccCCC-----CccceEee---cccCCCCCcc--------------------c---ccc-----
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPH-----ISRDLCLN---LCKHYPVPRE--------------------E---EVW----- 606 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~-----~~~~~~~~---L~~~~~l~~~--------------------~---~~~----- 606 (754)
|.++. +.||+..|+|..=-.. ......++ ...|...... . -.+
T Consensus 686 D~~~~d~~iget~iDLEnR~~T~~~a~cglaq~y~v~g~n~W~d~~~ps~iL~~~~Q~~~i~~P~~~~e~~~i~~~g~~~ 765 (1105)
T KOG1326|consen 686 DLEAQDEKIGETTIDLENRWLTRHRARCGLAQTYCVSGANIWRDRMDPSQILKEHCQPGGIPRPYYSYEVSAIKWKGESD 765 (1105)
T ss_pred ecccccchhhceehhhhhcccCcCCcccCccceeeeeccccccCccCHHHHHHHhhcccCCCCCeecCCcceEEecChhh
Confidence 99987 9999999998752110 00000000 0011100000 0 000
Q ss_pred --------------------------------------------ccccccccceeEEeeecccc---------------c
Q psy7848 607 --------------------------------------------GEEECWQHGKIFLTLCFSTK---------------K 627 (754)
Q Consensus 607 --------------------------------------------~~~~~~~~GeL~VsL~y~p~---------------~ 627 (754)
.......+|++.+-+.+.|. .
T Consensus 766 ~~d~~~~k~~~~~~L~~~~~r~~~~i~~~~~lvpehvetrtl~~~~~p~ieqgklq~Wvd~fp~d~~~ppl~itpr~~~~ 845 (1105)
T KOG1326|consen 766 IYDEKEAKTIEVPHLGNAWERLALWILMNQGLVPEHVETRTLHSKAFPNIEQGKLQMWVDFFPKDLYAPPLNITPRKPKK 845 (1105)
T ss_pred hhcccccCCCCCcccchHHHHHHHHhhhhcCcCCcccccccccCccccchhhcccchhhhhcccccCCCCCCCCCCChhh
Confidence 00112345555555544432 2
Q ss_pred cceeeccccccccccCCCCC----CCCceEEEEecCCCCcceeeeeeecCCC----CCccceeEEEEe-ecCccC-----
Q psy7848 628 RALIVNLIKCTNLIPMDSNG----FSDPFIKLYLKPDLHKRKYKTGVKWKTL----NPIFNEEFAIET-KITELS----- 693 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G----~sDPYVKV~L~~~~~k~k~KT~v~kkTl----NP~wNEtF~F~V-~~~dL~----- 693 (754)
..|+|.|..-.++...|.++ .+|.||+..+.++. ..+.+|.+.++++ |-.|.-.|.|+. +++++.
T Consensus 846 ~~lrviiWnt~~v~l~dd~~~ge~~sdIyv~gw~~gde-e~kq~tdvhyrsl~ge~~fnwr~~f~~Dyl~ae~~~vi~kk 924 (1105)
T KOG1326|consen 846 YELRVIIWNTDKVRLNDDEITGEKMSDIYVKGWVLGDE-EEKQKTDVHYRSLTGEGNFNWRFVFPFDYLPAEQLCVIAKK 924 (1105)
T ss_pred eeEEEEEeeccceeecCccceeeeccceEEecccccch-hhhcccceeeeeccCCcccceeeecccccchHhhHhhhhhh
Confidence 67889888888877666543 48999999997552 3477888877766 444555555542 222222
Q ss_pred -------------CCeEEEEEEEccCCCCCceeEEEEEecCCCCch
Q psy7848 694 -------------KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR 726 (754)
Q Consensus 694 -------------~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~ 726 (754)
-..|.|.|||.|.++.|+|||-.+|+|+.....
T Consensus 925 e~~ws~dete~k~p~rl~iqiWD~d~fs~Dd~Lg~lELdL~~~~~p 970 (1105)
T KOG1326|consen 925 EYSWSLDETEFKIPARLIIQIWDNDKFSKDDFLGALELDLSDMPAP 970 (1105)
T ss_pred hhccccccccccCchheEEEecccCccChhhhhhheeechhhCcCC
Confidence 146999999999999999999999999864433
|
|
| >cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.7e-12 Score=118.27 Aligned_cols=90 Identities=23% Similarity=0.367 Sum_probs=76.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|.|+|+.|+ |...+..+.+||||+|++.. ....+|+++.++.||+|||.|.|+ +.. ...|.|.|||++
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~----~~~~kT~v~~~t~~P~Wne~f~~~-~~~----~~~l~~~V~d~~ 71 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDG----QPPKKTEVSKKTSNPKWNEHFTVL-VTP----QSTLEFKVWSHH 71 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECC----cccEEeeeeCCCCCCccccEEEEE-eCC----CCEEEEEEEeCC
Confidence 46999999998 65555578899999999953 147899999999999999999985 432 368999999999
Q ss_pred CCCC-ccceeeeecCcccCCC
Q psy7848 565 KYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~ 584 (754)
..+. ++||++.++|.++...
T Consensus 72 ~~~~~~~iG~~~i~l~~l~~~ 92 (125)
T cd04021 72 TLKADVLLGEASLDLSDILKN 92 (125)
T ss_pred CCCCCcEEEEEEEEHHHhHhh
Confidence 9877 9999999999998754
|
E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e |
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.2e-12 Score=117.10 Aligned_cols=102 Identities=23% Similarity=0.320 Sum_probs=78.2
Q ss_pred CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCCCccceeeeecCccc
Q psy7848 502 IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRL 581 (754)
Q Consensus 502 ~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L 581 (754)
.+|.+||||+|.+.+ ....+|+++.++.||+|||.|.|. +. +.....|.|.|||++.+++++||++.|+|.++
T Consensus 9 ~~G~~dPYv~v~v~~----~~~~kT~v~~~t~nP~Wne~f~f~-v~--~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l 81 (111)
T cd04052 9 KTGLLSPYAELYLNG----KLVYTTRVKKKTNNPSWNASTEFL-VT--DRRKSRVTVVVKDDRDRHDPVLGSVSISLNDL 81 (111)
T ss_pred cCCCCCceEEEEECC----EEEEEEeeeccCCCCccCCceEEE-ec--CcCCCEEEEEEEECCCCCCCeEEEEEecHHHH
Confidence 468899999999952 246799999999999999999984 33 23457899999999999449999999999998
Q ss_pred CCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 582 RPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 582 ~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
...... ...|++|.. ...|+|++++.|.|
T Consensus 82 ~~~~~~-----~~~w~~L~~----------~~~G~i~~~~~~~p 110 (111)
T cd04052 82 IDATSV-----GQQWFPLSG----------NGQGRIRISALWKP 110 (111)
T ss_pred Hhhhhc-----cceeEECCC----------CCCCEEEEEEEEec
Confidence 543111 233444431 35799999999976
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >KOG1328|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=8.9e-13 Score=148.54 Aligned_cols=111 Identities=34% Similarity=0.539 Sum_probs=100.1
Q ss_pred cccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc---ceeeeeeecCCCCCccceeEEEEee
Q psy7848 612 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWKTLNPIFNEEFAIETK 688 (754)
Q Consensus 612 ~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k---~k~KT~v~kkTlNP~wNEtF~F~V~ 688 (754)
...|.+.|...|......|.|.|+.|+++.+.|.||.|||||.|.|.|...- ...+|.|+++|+||+|+|+|+|.|+
T Consensus 931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp 1010 (1103)
T KOG1328|consen 931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVP 1010 (1103)
T ss_pred CcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecC
Confidence 3568899999999999999999999999999999999999999999875422 2789999999999999999999998
Q ss_pred cCccC--CCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 689 ITELS--KQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 689 ~~dL~--~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
++... ..+|.++|+|+|.+..|||-|.+-|.++.
T Consensus 1011 ~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~ 1046 (1103)
T KOG1328|consen 1011 PEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGD 1046 (1103)
T ss_pred ccccccccceEEEEeeccceecccccchHHHHhhCC
Confidence 76654 57899999999999999999999999885
|
|
| >cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.5e-12 Score=115.82 Aligned_cols=86 Identities=26% Similarity=0.388 Sum_probs=68.2
Q ss_pred CCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 644 DSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 644 d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
..+|.+||||+|++. +...++|++++++.||.|||.|.|.+. +.....|.|.|||++.+ .+++||.+.|+|...
T Consensus 8 ~~~G~~dPYv~v~v~---~~~~~kT~v~~~t~nP~Wne~f~f~v~--~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l 81 (111)
T cd04052 8 SKTGLLSPYAELYLN---GKLVYTTRVKKKTNNPSWNASTEFLVT--DRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDL 81 (111)
T ss_pred ccCCCCCceEEEEEC---CEEEEEEeeeccCCCCccCCceEEEec--CcCCCEEEEEEEECCCC-CCCeEEEEEecHHHH
Confidence 357889999999993 224689999999999999999999985 33467899999999998 899999999998752
Q ss_pred ---CchhhhHHhhhc
Q psy7848 724 ---GDRLRHWVDMMK 735 (754)
Q Consensus 724 ---ge~~~hW~~ll~ 735 (754)
+.....|+.|..
T Consensus 82 ~~~~~~~~~w~~L~~ 96 (111)
T cd04052 82 IDATSVGQQWFPLSG 96 (111)
T ss_pred HhhhhccceeEECCC
Confidence 222344555543
|
5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. |
| >PLN03008 Phospholipase D delta | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.6e-12 Score=147.21 Aligned_cols=88 Identities=19% Similarity=0.316 Sum_probs=71.2
Q ss_pred CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC--CC
Q psy7848 647 GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KG 724 (754)
Q Consensus 647 G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~g 724 (754)
+.+||||+|.|. +.++.||+++++++||+|||+|.|.+.. . ...|.|+|||+|.++ +++||.+.|++.. .|
T Consensus 75 ~tSDPYV~I~Lg---~~rv~RTrVi~n~~NPvWNE~F~f~vah--~-~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~G 147 (868)
T PLN03008 75 ITSDPYVTVVVP---QATLARTRVLKNSQEPLWDEKFNISIAH--P-FAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASG 147 (868)
T ss_pred CCCCceEEEEEC---CcceeeEEeCCCCCCCCcceeEEEEecC--C-CceEEEEEEcCCccC-CceeEEEEEEHHHcCCC
Confidence 468999999992 2346799999999999999999999864 2 468999999999997 5899999999986 45
Q ss_pred chhhhHHhhhcCCCcce
Q psy7848 725 DRLRHWVDMMKYPDHKH 741 (754)
Q Consensus 725 e~~~hW~~ll~~P~~~i 741 (754)
+..+.|++|+..-+++.
T Consensus 148 e~vd~Wl~Ll~~~~kp~ 164 (868)
T PLN03008 148 ERISGWFPVLGASGKPP 164 (868)
T ss_pred CceEEEEEccccCCCCC
Confidence 56667777776654433
|
|
| >PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.5e-11 Score=104.31 Aligned_cols=84 Identities=32% Similarity=0.606 Sum_probs=72.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|+|++|+||+..+..+..||||++.+.+... ..++|+++.++.+|.|||+|.|. +...+. ..|.|+|||++..
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~--~~~~T~~~~~~~~P~w~e~~~~~-~~~~~~--~~l~~~V~~~~~~ 75 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSES--TKYKTKVKKNTSNPVWNEEFEFP-LDDPDL--DSLSFEVWDKDSF 75 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTC--EEEEECCBSSBSSEEEEEEEEEE-ESHGCG--TEEEEEEEEETSS
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeee--eeeeeeeeeccccceeeeeeeee-eecccc--cceEEEEEECCCC
Confidence 789999999999988888999999999986443 67999999999999999999995 444444 3499999999999
Q ss_pred CC-ccceeee
Q psy7848 567 GH-DFLGEAR 575 (754)
Q Consensus 567 g~-dfLGev~ 575 (754)
+. ++||++.
T Consensus 76 ~~~~~iG~~~ 85 (85)
T PF00168_consen 76 GKDELIGEVK 85 (85)
T ss_dssp SSEEEEEEEE
T ss_pred CCCCEEEEEC
Confidence 96 9999974
|
C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A .... |
| >cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.4e-11 Score=119.04 Aligned_cols=97 Identities=16% Similarity=0.278 Sum_probs=74.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
..|.|.|++|++|++++ |+||.|.| ++. ..||+++.++.||.|||.|.|...+. -..|.|.||+.+.
T Consensus 11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~L----d~~~vaRT~v~~~~~nP~W~E~F~f~~~~~---~~~l~v~v~k~~~ 78 (146)
T cd04013 11 NSLKLWIIEAKGLPPKK-----RYYCELCL----DKTLYARTTSKLKTDTLFWGEHFEFSNLPP---VSVITVNLYRESD 78 (146)
T ss_pred EEEEEEEEEccCCCCcC-----CceEEEEE----CCEEEEEEEEEcCCCCCcceeeEEecCCCc---ccEEEEEEEEccC
Confidence 57899999999999865 79999999 344 56999999999999999999975322 2679999986552
Q ss_pred -CC---CCceeEEEEEecCC--CCchhhhHHhhhcC
Q psy7848 707 -GK---SNDYLGCLELCCNS--KGDRLRHWVDMMKY 736 (754)
Q Consensus 707 -~~---~ddfLG~v~L~l~s--~ge~~~hW~~ll~~ 736 (754)
.+ ++.+||.|.|++.. .+...+.||+++..
T Consensus 79 ~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~ 114 (146)
T cd04013 79 KKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTP 114 (146)
T ss_pred ccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecC
Confidence 22 57899999999874 33344445444443
|
SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.6e-12 Score=158.66 Aligned_cols=101 Identities=21% Similarity=0.177 Sum_probs=85.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
|.|.|+|++|.||. +..|.+||||++.+.. ..++||++++++.||+|||+|+|.+.... .+..|.|+|||+|.+
T Consensus 1980 G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~---~~~~kTkvvk~~~nP~Wne~f~~~~~~p~-~~~~l~iev~d~d~f 2053 (2102)
T PLN03200 1980 GSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN---GPPRQTKVVSHSSSPEWKEGFTWAFDSPP-KGQKLHISCKSKNTF 2053 (2102)
T ss_pred cceEEEEeeccccc--cccCCCCCeEEEEECC---CCcccccccCCCCCCCcccceeeeecCCC-CCCceEEEEEecCcc
Confidence 89999999999997 5578899999999942 23779999999999999999998774221 246799999999999
Q ss_pred CCCceeEEEEEecCC--CCchhhhHHhhhc
Q psy7848 708 KSNDYLGCLELCCNS--KGDRLRHWVDMMK 735 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s--~ge~~~hW~~ll~ 735 (754)
++| .||.+.|++.. .+..+..||.|..
T Consensus 2054 ~kd-~~G~~~i~l~~vv~~~~~~~~~~L~~ 2082 (2102)
T PLN03200 2054 GKS-SLGKVTIQIDRVVMEGTYSGEYSLNP 2082 (2102)
T ss_pred CCC-CCceEEEEHHHHhcCceeeeeeecCc
Confidence 654 89999999987 4667888999885
|
|
| >KOG0905|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-12 Score=147.51 Aligned_cols=111 Identities=26% Similarity=0.354 Sum_probs=101.6
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEE-ee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE-TK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~-V~ 688 (754)
.+..|+|.+++.|. ++.|.|.|..|++|+-...+..+|||||.||.|+..+. |+||+++++|.||.|||...|. ++
T Consensus 1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence 45678999999997 79999999999999877778889999999999998775 9999999999999999999998 77
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
.+.+....|.++||..+.+..|.|||++.|+|...
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~ 1621 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKV 1621 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhc
Confidence 77888899999999999999999999999998864
|
|
| >KOG1326|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.9e-12 Score=149.38 Aligned_cols=87 Identities=28% Similarity=0.462 Sum_probs=75.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
++|.|++|-+|.+.|.+|.+||||++.+ +++ .-++..+.+|+||+|++-|++... ......|+|.|||+|.+
T Consensus 615 vrVyvv~A~~L~p~D~ng~adpYv~l~l----Gk~~~~d~~~yip~tlnPVfgkmfel~~~--lp~ek~l~v~vyd~D~~ 688 (1105)
T KOG1326|consen 615 VRVYVVEAFSLQPSDGNGDADPYVKLLL----GKKRTLDRAHYIPNTLNPVFGKMFELECL--LPFEKDLIVEVYDHDLE 688 (1105)
T ss_pred EEEEEEEeeeccccCCCCCcCceeeeee----ccchhhhhhhcCcCCCCcHHHHHHHhhcc--cchhhcceeEEEEeecc
Confidence 4488999999999999999999999999 444 467778999999999998888753 33468899999999999
Q ss_pred CCCceeEEEEEecCC
Q psy7848 708 KSNDYLGCLELCCNS 722 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s 722 (754)
+.|+.||+..+++..
T Consensus 689 ~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 689 AQDEKIGETTIDLEN 703 (1105)
T ss_pred cccchhhceehhhhh
Confidence 999999999999874
|
|
| >KOG0905|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-11 Score=143.90 Aligned_cols=124 Identities=26% Similarity=0.398 Sum_probs=110.5
Q ss_pred CCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 468 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 468 ~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
++.-|+|.++++|. ++.|.|.|.-|++|+-...+..+||||+.||+|+..+..++||+++++|.||.|||.+.|.+++
T Consensus 1509 ~~iggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p 1586 (1639)
T KOG0905|consen 1509 GEIGGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFP 1586 (1639)
T ss_pred cccCceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCc
Confidence 35678999999995 9999999999999987776778999999999999888889999999999999999999998888
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
.+.+..+.|+++||..+.+.. .|||.+.|+|.++...++..-|+.|
T Consensus 1587 ~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~l 1633 (1639)
T KOG0905|consen 1587 KEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNL 1633 (1639)
T ss_pred hhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeec
Confidence 888888999999999999888 9999999999998776555444444
|
|
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-10 Score=102.72 Aligned_cols=96 Identities=38% Similarity=0.469 Sum_probs=80.5
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|......+..+|||++.+.+.. ...++|+++.++.||.|||+|.|.+.... ...|.|+|||++..+.
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~-~~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~~ 78 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP-KEKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFGR 78 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc-cceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCccC
Confidence 67899999999888776789999999996543 34789999999999999999999986433 7899999999998888
Q ss_pred CceeEEEEEecCCCCchhh
Q psy7848 710 NDYLGCLELCCNSKGDRLR 728 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~ 728 (754)
+.+||.+.+++.....+..
T Consensus 79 ~~~~G~~~~~l~~~~~~~~ 97 (101)
T smart00239 79 DDFIGQVTIPLSDLLLGGR 97 (101)
T ss_pred CceeEEEEEEHHHcccCcc
Confidence 9999999999876444333
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.5e-11 Score=111.49 Aligned_cols=96 Identities=26% Similarity=0.356 Sum_probs=81.4
Q ss_pred EEEEEEEEecCCCCCC--CCC--CCCcEEEEEEeCCCCCceEEEeeeecCCCC--CeeceeEEEeeeec-----------
Q psy7848 486 SLHVTLHRAKGLRAMD--IHG--TSDPFCKLNLVPLTKTSHRLRTKTCLRTIN--PEFHEKLTFYSVSE----------- 548 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d--~~g--~sDPYVkv~Llp~~~~~~~~rTkvi~~TlN--P~WnE~f~F~~I~~----------- 548 (754)
.|+|.|.+|+|++..+ ..| .+||||++.|.+.. ..+++|.|.++++| |+||+.|.|. +..
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~--~~kqkTDVHyrslnG~~~FNwRfvF~-~~~~~~~~~~~~~~ 77 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLE--EDKQKTDVHYRSLDGEGNFNWRFVFP-FDYLPAEKKIVVIK 77 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCc--ccccccceEEecCCCCcEEeEEEEEe-eecCCccceeEEEe
Confidence 3899999999976554 356 49999999998752 47889999999999 9999999986 555
Q ss_pred ----------cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 549 ----------TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 549 ----------~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
+.+....|.|.|||.|.++. ++||++.++|..+...
T Consensus 78 ~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~ 124 (133)
T cd08374 78 KEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRP 124 (133)
T ss_pred eccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccc
Confidence 55667999999999999988 9999999999987654
|
Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-11 Score=151.36 Aligned_cols=120 Identities=25% Similarity=0.377 Sum_probs=93.4
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
-|.|.|+|++|.||. +..+.+||||++.+.. ..+.||++++++.||+|||+|.|. +... .....|+|+|||+
T Consensus 1979 ~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~----~~~~kTkvvk~~~nP~Wne~f~~~-~~~p-~~~~~l~iev~d~ 2050 (2102)
T PLN03200 1979 PGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGN----GPPRQTKVVSHSSSPEWKEGFTWA-FDSP-PKGQKLHISCKSK 2050 (2102)
T ss_pred CcceEEEEeeccccc--cccCCCCCeEEEEECC----CCcccccccCCCCCCCcccceeee-ecCC-CCCCceEEEEEec
Confidence 488999999999998 4468899999999963 346789999999999999999972 2221 1236799999999
Q ss_pred CCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccce---eEEeeeccc
Q psy7848 564 DKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGK---IFLTLCFST 625 (754)
Q Consensus 564 d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~Ge---L~VsL~y~p 625 (754)
|.|+++.||.+.|+|.++..+.....|++| ..+ ....|+ |.|.+.+.+
T Consensus 2051 d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L------~~~--------~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2051 NTFGKSSLGKVTIQIDRVVMEGTYSGEYSL------NPE--------SNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred CccCCCCCceEEEEHHHHhcCceeeeeeec------Ccc--------cccCCCcceEEEEEEecC
Confidence 999889999999999998876555545444 321 235677 888777653
|
|
| >KOG1011|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.7e-11 Score=133.85 Aligned_cols=106 Identities=26% Similarity=0.521 Sum_probs=93.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..++++|+.|.+|.+.|..|.+||||.+.+ ++.+++|+++...+||+|||.|.|+.... ...|.+.|||.|..
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv----~ktkrrtrti~~~lnpvw~ekfhfechns---tdrikvrvwded~d 367 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQV----GKTKRRTRTIHQELNPVWNEKFHFECHNS---TDRIKVRVWDEDND 367 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEee----cccchhhHhhhhccchhhhhheeeeecCC---CceeEEEEecCccc
Confidence 568899999999999999999999999999 67799999999999999999999998533 57899999998842
Q ss_pred -----------CCCceeEEEEEecCCCCchhhhHHhhhcCCCcc
Q psy7848 708 -----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 708 -----------~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ 740 (754)
.+|||||+..|.+.....+.+.||+|-+.-++.
T Consensus 368 lksklrqkl~resddflgqtvievrtlsgemdvwynlekrtdks 411 (1283)
T KOG1011|consen 368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGEMDVWYNLEKRTDKS 411 (1283)
T ss_pred HHHHHHHHhhhcccccccceeEEEEecccchhhhcchhhccchh
Confidence 579999999999999888999999998776553
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=99.46 Aligned_cols=102 Identities=37% Similarity=0.499 Sum_probs=84.2
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKS 709 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~ 709 (754)
|.|.|++|++|......+..||||.+.+.+ ...++|.++.++.||.||+.|.|.+... ....|.|.|||++..+.
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~---~~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~~ 75 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG---KQKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFSK 75 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc---CceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCCC
Confidence 568999999998877778899999999953 3578999999999999999999998642 46789999999998888
Q ss_pred CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 710 NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 710 ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
+.+||.+.+++.... ........|++|
T Consensus 76 ~~~ig~~~~~l~~l~-----------~~~~~~~~~~~l 102 (102)
T cd00030 76 DDFLGEVEIPLSELL-----------DSGKEGELWLPL 102 (102)
T ss_pred CceeEEEEEeHHHhh-----------hcCCcCcceecC
Confidence 999999999987532 345556666654
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >smart00239 C2 Protein kinase C conserved region 2 (CalB) | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-09 Score=95.38 Aligned_cols=93 Identities=34% Similarity=0.576 Sum_probs=78.0
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|.|++|++|......+..+|||++++.+.. ....+|+++.++.||.|||+|.|+ +.... ...|.|+|||.+..
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~--~~~~~T~~~~~~~~P~w~e~~~~~-~~~~~--~~~l~i~v~~~~~~ 76 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDP--KEKKKTKVVKNTLNPVWNETFEFE-VPPPE--LAELEIEVYDKDRF 76 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCc--cceEeeeEecCCCCCcccceEEEE-ecCcc--cCEEEEEEEecCCc
Confidence 78999999999988766788999999997532 257899999999999999999985 33222 68999999999988
Q ss_pred CC-ccceeeeecCcccCCC
Q psy7848 567 GH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~~~ 584 (754)
+. .+||.+.+++.++..+
T Consensus 77 ~~~~~~G~~~~~l~~~~~~ 95 (101)
T smart00239 77 GRDDFIGQVTIPLSDLLLG 95 (101)
T ss_pred cCCceeEEEEEEHHHcccC
Confidence 76 9999999999988654
|
Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. |
| >KOG1327|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.6e-09 Score=121.93 Aligned_cols=206 Identities=25% Similarity=0.313 Sum_probs=150.0
Q ss_pred CCCCCCCCCcEEEEEEeC--------------CCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 499 AMDIHGTSDPFCKLNLVP--------------LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 499 ~~d~~g~sDPYVkv~Llp--------------~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..|.....+|-|.+.... +.......+|.++.+.+||.|-+.|... .-.+. .+.|+|.++|-+
T Consensus 4 ~~d~~~~~~~~c~~~~~~s~~~~~~~~~l~~~~~~~~e~~rte~i~~~~~p~f~~~~~l~-y~fE~--vQ~l~~~~~~~~ 80 (529)
T KOG1327|consen 4 AYDIFSKSDPICKLFYLTSGGAWLETLELTKEDDVWEEVGRTEVIRNVLNPFFTKKFLLQ-YRFEK--VQLLRFEVYDID 80 (529)
T ss_pred ccccccccCceeeeeccCCCccccccccccccccccccccceeeeeccCCccceeeechh-heeee--eeeEEEEEeecC
Confidence 334455566666655431 2223455689999999999999988653 22222 378999999977
Q ss_pred CC----CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccccccceeeccccccc
Q psy7848 565 KY----GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTN 639 (754)
Q Consensus 565 ~~----g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~g~L~V~V~~A~n 639 (754)
.. .. +|+|++...+..+.........+.++. ......|.|.+.+.-............+|++
T Consensus 81 ~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~-------------~~~~~~g~iti~aee~~~~~~~~~~~~~~~~ 147 (529)
T KOG1327|consen 81 SRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKP-------------GKNAGSGTITISAEEDESDNDVVQFSFRAKN 147 (529)
T ss_pred CccCCcchhcccceeeeehhhhhhhhhhhhhhhccc-------------CccCCcccEEEEeecccccCceeeeeeeeee
Confidence 54 34 999999999998865433222221211 0246789998888776666666666778999
Q ss_pred cccCCCCCCCCceEEEEecCCCCc-c-eeeeeeecCCCCCccceeEEEEeecCccC----CCeEEEEEEEccCCCCCcee
Q psy7848 640 LIPMDSNGFSDPFIKLYLKPDLHK-R-KYKTGVKWKTLNPIFNEEFAIETKITELS----KQTLVITVWDKDYGKSNDYL 713 (754)
Q Consensus 640 L~~~d~~G~sDPYVKV~L~~~~~k-~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~----~~~L~ItV~D~d~~~~ddfL 713 (754)
|...|..+.+|||..++-..+++. . .++|.++++|+||.|-. |.|....++ +..+.|.+||++..+++++|
T Consensus 148 ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~---~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~i 224 (529)
T KOG1327|consen 148 LDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP---FSISLQSLCSKDGNRPIQIECYDYDSNGKHDLI 224 (529)
T ss_pred cCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc---cccchhhhcccCCCCceEEEEeccCCCCCcCce
Confidence 999999999999999997644433 3 89999999999999998 555555554 37899999999999999999
Q ss_pred EEEEEecCCC
Q psy7848 714 GCLELCCNSK 723 (754)
Q Consensus 714 G~v~L~l~s~ 723 (754)
|.++-.+...
T Consensus 225 g~~~tt~~~~ 234 (529)
T KOG1327|consen 225 GKFQTTLSEL 234 (529)
T ss_pred eEecccHHHh
Confidence 9999877653
|
|
| >KOG1328|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.9e-10 Score=128.68 Aligned_cols=114 Identities=32% Similarity=0.494 Sum_probs=100.0
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC--CceEEEeeeecCCCCCeeceeEEEeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK--TSHRLRTKTCLRTINPEFHEKLTFYSV 546 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~--~~~~~rTkvi~~TlNP~WnE~f~F~~I 546 (754)
-..|.+.+.+.|......|.|-|+-|+++.+.|.+|.+||||.|.|+|... .....+|+|+.+|+||+|+|.|.|. |
T Consensus 931 ~~fg~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs-V 1009 (1103)
T KOG1328|consen 931 HQFGVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS-V 1009 (1103)
T ss_pred CcCCceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-c
Confidence 468899999999999999999999999999999999999999999998432 2356899999999999999999995 6
Q ss_pred eccccC--cceEEEEEeeCCCCCC-ccceeeeecCcccCC
Q psy7848 547 SETDLS--LQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 547 ~~~el~--~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~ 583 (754)
+.+... ...|.|+|+|+|-... ||-|++.+.|.++..
T Consensus 1010 p~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1010 PPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred CccccccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence 655443 4779999999999988 999999999998753
|
|
| >cd00030 C2 C2 domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.8e-09 Score=92.76 Aligned_cols=89 Identities=37% Similarity=0.652 Sum_probs=76.3
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|.|++|++|.........+|||.+.+.+ ....+|.++.++.||.||+.|.|. +... ....|.|.||+.+..
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~----~~~~~T~~~~~~~~P~w~~~~~~~-~~~~--~~~~l~i~v~~~~~~ 73 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGG----KQKFKTKVVKNTLNPVWNETFEFP-VLDP--ESDTLTVEVWDKDRF 73 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEecc----CceEecceeCCCCCCcccceEEEE-ccCC--CCCEEEEEEEecCCC
Confidence 579999999998877778899999999964 367899999999999999999984 3321 357899999999988
Q ss_pred CC-ccceeeeecCcccC
Q psy7848 567 GH-DFLGEARFPLNRLR 582 (754)
Q Consensus 567 g~-dfLGev~I~L~~L~ 582 (754)
+. .+||.+.+++.++.
T Consensus 74 ~~~~~ig~~~~~l~~l~ 90 (102)
T cd00030 74 SKDDFLGEVEIPLSELL 90 (102)
T ss_pred CCCceeEEEEEeHHHhh
Confidence 76 99999999999987
|
The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. |
| >KOG1011|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.2e-10 Score=122.97 Aligned_cols=99 Identities=30% Similarity=0.469 Sum_probs=81.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
..+.++|+.|.+|.+.|..|.+||||.+.++ ..+.||+++...+||+|||.|+|. - + -....|.+.|||.|
T Consensus 295 akitltvlcaqgl~akdktg~sdpyvt~qv~-----ktkrrtrti~~~lnpvw~ekfhfe-c-h--nstdrikvrvwded 365 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVG-----KTKRRTRTIHQELNPVWNEKFHFE-C-H--NSTDRIKVRVWDED 365 (1283)
T ss_pred eeeEEeeeecccceecccCCCCCCcEEEeec-----ccchhhHhhhhccchhhhhheeee-e-c--CCCceeEEEEecCc
Confidence 4578999999999999999999999999995 467899999999999999999993 2 1 23478999999988
Q ss_pred CC------------CCccceeeeecCcccCCCCccceEeecc
Q psy7848 565 KY------------GHDFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 565 ~~------------g~dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.. +++|||+..|.+..|..+ .+.|+.|+
T Consensus 366 ~dlksklrqkl~resddflgqtvievrtlsge--mdvwynle 405 (1283)
T KOG1011|consen 366 NDLKSKLRQKLTRESDDFLGQTVIEVRTLSGE--MDVWYNLE 405 (1283)
T ss_pred ccHHHHHHHHhhhcccccccceeEEEEecccc--hhhhcchh
Confidence 42 349999999999988663 44555554
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-09 Score=121.91 Aligned_cols=111 Identities=18% Similarity=0.246 Sum_probs=85.9
Q ss_pred cceeeccccccccccC-----CCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEE
Q psy7848 628 RALIVNLIKCTNLIPM-----DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 701 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~-----d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV 701 (754)
..|.|.|+.|.+|+.. +.....||||+|.+.+-... .+++|.+..++.||+|||+|.|.|...+| ..|.|.|
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PEL--AlLrf~V 486 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDL--ALISFEV 486 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCc--eEEEEEE
Confidence 5688999999987521 22345799999999753322 36778888889999999999999876554 6899999
Q ss_pred EEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcce
Q psy7848 702 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~i 741 (754)
||+|..+.|+|||+..|++.+.-.++.| ..|+...|..+
T Consensus 487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR~-VpL~~~~g~~l 525 (537)
T PLN02223 487 YDYEVSTADAFCGQTCLPVSELIEGIRA-VPLYDERGKAC 525 (537)
T ss_pred EecCCCCCCcEEEEEecchHHhcCCcee-EeccCCCcCCC
Confidence 9999988999999999999987666654 35555555443
|
|
| >KOG1031|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.1e-09 Score=119.02 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=93.7
Q ss_pred cceeeccccccccccCCC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCccc-eeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 628 RALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wN-EtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
|.|-|.|..|++|+.||. ....|.||.|.+ ....+||.|..+++||.|| +-|.|+|...+|++..|.|+|.|+|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~----~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~d 78 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF----ANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHD 78 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEe----cccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccc
Confidence 678899999999999986 456899999999 4568999999999999999 5799999999999999999999999
Q ss_pred CCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 706 YGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
..+.||-||.|.|+++... +..--.-+...|.-+.+|.++.
T Consensus 79 tysandaigkv~i~idpl~--~e~aaqavhgkgtvisgw~pif 119 (1169)
T KOG1031|consen 79 TYSANDAIGKVNIDIDPLC--LEEAAQAVHGKGTVISGWFPIF 119 (1169)
T ss_pred ccccccccceeeeccChHH--HHhHHhhhcCCceEEeeeeecc
Confidence 9999999999999988421 0111112334566666776654
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.6e-09 Score=121.51 Aligned_cols=112 Identities=24% Similarity=0.244 Sum_probs=88.2
Q ss_pred cceeeccccccccccC------CCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~------d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~It 700 (754)
..|.|.|+.|.+|+.. +.....||||+|.+.+-... .+++|+++.++.||+|||+|.|.+...++ ..|.|.
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PEL--Allrf~ 547 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPEL--ALLRIE 547 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCc--cEEEEE
Confidence 5688999999887432 11233599999998753322 47799999999999999999999876554 589999
Q ss_pred EEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
|||+|..+.|+|+|+..|++...-.++. |..|+..-+..+.
T Consensus 548 V~D~D~~~~ddfiGq~~lPv~~Lr~GyR-~VpL~~~~G~~l~ 588 (599)
T PLN02952 548 VREYDMSEKDDFGGQTCLPVSELRPGIR-SVPLHDKKGEKLK 588 (599)
T ss_pred EEecCCCCCCCeEEEEEcchhHhcCCce-eEeCcCCCCCCCC
Confidence 9999999899999999999998777664 7777766565544
|
|
| >PLN02223 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=115.74 Aligned_cols=97 Identities=18% Similarity=0.262 Sum_probs=77.9
Q ss_pred CEEEEEEEEecCCCCC-----CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEE
Q psy7848 485 CSLHVTLHRAKGLRAM-----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 559 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~-----d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~s 559 (754)
..|.|+|+.|.+|+.. +.....||||+|.+.+-.......+|.+..|+.||+|||+|.|. |...++ ..|+|.
T Consensus 409 ~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~-i~~PEL--AlLrf~ 485 (537)
T PLN02223 409 KILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFP-LTYPDL--ALISFE 485 (537)
T ss_pred eEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEE-EEccCc--eEEEEE
Confidence 5799999999988521 22345799999999763333456788888889999999999995 555444 589999
Q ss_pred EeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 560 VLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 560 V~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|+|+|..+. +|+|++.+|+..|..+
T Consensus 486 V~D~D~~~~ddfiGQ~~LPv~~Lr~G 511 (537)
T PLN02223 486 VYDYEVSTADAFCGQTCLPVSELIEG 511 (537)
T ss_pred EEecCCCCCCcEEEEEecchHHhcCC
Confidence 999999776 9999999999999876
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.1e-09 Score=119.31 Aligned_cols=110 Identities=21% Similarity=0.270 Sum_probs=86.4
Q ss_pred cceeeccccccccccC------CCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPM------DSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~------d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~It 700 (754)
..|.|.|+.+.+++.. +.....||||+|.+.+-... .+++|+++.++.||+|||+|.|.+...+| ..|.|.
T Consensus 469 ~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPEL--AllRf~ 546 (598)
T PLN02230 469 KTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPEL--ALLRVE 546 (598)
T ss_pred cEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCce--eEEEEE
Confidence 5688999999986421 22335799999999753322 36789999999999999999999876665 789999
Q ss_pred EEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcc
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ 740 (754)
|+|+|..+.|+|||+..|++...-.++.|= .|+..-|..
T Consensus 547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~V-~L~~~~G~~ 585 (598)
T PLN02230 547 VHEHDINEKDDFGGQTCLPVSEIRQGIHAV-PLFNRKGVK 585 (598)
T ss_pred EEECCCCCCCCEEEEEEcchHHhhCccceE-eccCCCcCC
Confidence 999999889999999999999877777653 455555544
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.6e-08 Score=116.63 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=86.1
Q ss_pred cceeeccccccccc----cC--CCCCCCCceEEEEecCCCC-cceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLI----PM--DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~----~~--d~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~It 700 (754)
..|.|.|+.|.+++ .. +.....||||+|.+.+... ..+++|+++.++.||+|||+|.|.+...+| ..|.|.
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeL--AllRf~ 529 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPEL--ALLRLE 529 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCce--eEEEEE
Confidence 56888999988742 11 2234579999999974433 247799999999999999999999876655 789999
Q ss_pred EEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcce
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~i 741 (754)
|||+|..+.|+|||+..|++.....++.|= .|+..-+..+
T Consensus 530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR~V-~L~~~~g~~l 569 (581)
T PLN02222 530 VHEYDMSEKDDFGGQTCLPVWELSQGIRAF-PLHSRKGEKY 569 (581)
T ss_pred EEECCCCCCCcEEEEEEcchhhhhCccceE-EccCCCcCCC
Confidence 999998888999999999999887777763 4555545443
|
|
| >PLN02952 phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.2e-08 Score=113.69 Aligned_cols=97 Identities=26% Similarity=0.383 Sum_probs=78.2
Q ss_pred CEEEEEEEEecCCCCC------CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLRAM------DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~------d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
..|.|+|+.|.+|+.. +.....||||+|.+.+-.....+.+|+++.++.||+|||+|.|. +...++ ..|+|
T Consensus 470 ~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~-i~~PEL--Allrf 546 (599)
T PLN02952 470 KTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFP-LTVPEL--ALLRI 546 (599)
T ss_pred ceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEE-EEcCCc--cEEEE
Confidence 5799999999887532 11234599999999763334467799999999999999999995 554444 58999
Q ss_pred EEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 559 LVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 559 sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
.|||+|..+. +|+|++.|||..|..+
T Consensus 547 ~V~D~D~~~~ddfiGq~~lPv~~Lr~G 573 (599)
T PLN02952 547 EVREYDMSEKDDFGGQTCLPVSELRPG 573 (599)
T ss_pred EEEecCCCCCCCeEEEEEcchhHhcCC
Confidence 9999999876 9999999999999876
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.73 E-value=5.8e-08 Score=114.58 Aligned_cols=125 Identities=19% Similarity=0.302 Sum_probs=95.5
Q ss_pred CCEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEEeCCCCCceEEEeeeecCC-CCCeeceeEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMD------------------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFY 544 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d------------------~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~T-lNP~WnE~f~F~ 544 (754)
.|.|.|+|.+|++|+.++ ..+.+||||.|.|. +....||+++.+. .||.|||.|.++
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~a~v~rtr~~~~~~~~p~w~e~f~i~ 82 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE----KARVGRTRKIENEPKNPRWYESFHIY 82 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC----CcEEEEEeecCCCCCCCccccceEEe
Confidence 488999999999998642 12567999999996 4578899999885 699999999875
Q ss_pred eeeccccCcceEEEEEeeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 545 SVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 545 ~I~~~el~~~~L~~sV~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
+.+. ...|.|.|.|.|.+|..+||.+.||+.+|..+...+-|+++.. ... ........|+|+++|.
T Consensus 83 -~ah~---~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~------~~~----~p~~~~~~~~~~~~f~ 148 (808)
T PLN02270 83 -CAHM---ASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILD------NDK----NPIHGGSKIHVKLQYF 148 (808)
T ss_pred -eccC---cceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccC------CCC----CcCCCCCEEEEEEEEE
Confidence 3333 3789999999999999999999999999988766555555532 110 1122335888898886
Q ss_pred cc
Q psy7848 625 TK 626 (754)
Q Consensus 625 p~ 626 (754)
+.
T Consensus 149 ~~ 150 (808)
T PLN02270 149 EV 150 (808)
T ss_pred Ec
Confidence 53
|
|
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=98.72 E-value=1e-08 Score=89.11 Aligned_cols=99 Identities=20% Similarity=0.309 Sum_probs=81.5
Q ss_pred eccccccccccCCC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCC
Q psy7848 632 VNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSN 710 (754)
Q Consensus 632 V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~d 710 (754)
++|+.|+||.-... +.....|||.-+.-. .....||+++....||+|+|+|.|.|...+|....|.|.|+. ...+.
T Consensus 3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~-kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK 79 (103)
T cd08684 3 ITVLKCKDLSWPSSCGENPTIYIKGILTLP-KPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK 79 (103)
T ss_pred EEEEEecccccccccCcCCeeEEEEEEecC-CCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence 67889999965544 345677998776421 123789999999999999999999999999999999999998 55678
Q ss_pred ceeEEEEEecCCCC-chhhhHHhh
Q psy7848 711 DYLGCLELCCNSKG-DRLRHWVDM 733 (754)
Q Consensus 711 dfLG~v~L~l~s~g-e~~~hW~~l 733 (754)
+.||.|.|++++.| ++..||.++
T Consensus 80 e~iG~~sL~l~s~geeE~~HW~e~ 103 (103)
T cd08684 80 RTIGECSLSLRTLSTQETDHWLEI 103 (103)
T ss_pred ceeeEEEeecccCCHHHhhhhhcC
Confidence 99999999999977 589999864
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >KOG2059|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.9e-08 Score=114.76 Aligned_cols=87 Identities=29% Similarity=0.434 Sum_probs=77.4
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..|.|.|.+|+||++.+..|.+|||+.|.+. .....+|.++.+++.|.|.|+|.|+|+.. =..|.|-|||+| +
T Consensus 5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD---~E~v~RT~tv~ksL~PF~gEe~~~~iP~~---F~~l~fYv~D~d-~ 77 (800)
T KOG2059|consen 5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLD---QEEVCRTATVEKSLCPFFGEEFYFEIPRT---FRYLSFYVWDRD-L 77 (800)
T ss_pred cceeEEEeecccCCCCCCCCCcCcceEEeec---chhhhhhhhhhhhcCCccccceEEecCcc---eeeEEEEEeccc-c
Confidence 4688999999999999999999999999994 23488999999999999999999999643 478999999999 8
Q ss_pred CCCceeEEEEEecC
Q psy7848 708 KSNDYLGCLELCCN 721 (754)
Q Consensus 708 ~~ddfLG~v~L~l~ 721 (754)
+.|+.||.|.|.-.
T Consensus 78 ~~D~~IGKvai~re 91 (800)
T KOG2059|consen 78 KRDDIIGKVAIKRE 91 (800)
T ss_pred ccccccceeeeeHH
Confidence 99999999999854
|
|
| >KOG0169|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-08 Score=115.71 Aligned_cols=108 Identities=25% Similarity=0.346 Sum_probs=86.3
Q ss_pred ceeeccccccccccCC----CCCCCCceEEEEecCCCCcc-eeeee-eecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 629 ALIVNLIKCTNLIPMD----SNGFSDPFIKLYLKPDLHKR-KYKTG-VKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d----~~G~sDPYVKV~L~~~~~k~-k~KT~-v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
.|.|.|+.+.+++..- .+..+||||.|.+.+-.... +.+|+ |..++.||.|+|+|+|.+...+| ..|.|.|+
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPEL--AliRF~V~ 694 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPEL--ALIRFEVH 694 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccce--eEEEEEEE
Confidence 5899999999765432 24568999999986544433 88999 56788999999999999987776 68999999
Q ss_pred EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCc
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 739 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~ 739 (754)
|+|..++|+|+|+.+|++...-+++.|- .|+..-|+
T Consensus 695 d~d~~~~ddF~GQ~tlP~~~L~~GyRhV-pL~~~~G~ 730 (746)
T KOG0169|consen 695 DYDYIGKDDFIGQTTLPVSELRQGYRHV-PLLSREGE 730 (746)
T ss_pred ecCCCCcccccceeeccHHHhhCceeee-eecCCCCc
Confidence 9999999999999999999877777774 34444343
|
|
| >PLN02230 phosphoinositide phospholipase C 4 | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-08 Score=112.44 Aligned_cols=98 Identities=20% Similarity=0.289 Sum_probs=78.2
Q ss_pred CCEEEEEEEEecCCCCC------CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEE
Q psy7848 484 TCSLHVTLHRAKGLRAM------DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH 557 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~------d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~ 557 (754)
...|.|+|+.+.+++.. +.....||||+|.+.+-.....+.+|++..++.||+|||+|.|. +...+| ..|+
T Consensus 468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~-l~vPEL--AllR 544 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFP-LAVPEL--ALLR 544 (598)
T ss_pred CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEE-EEcCce--eEEE
Confidence 36799999999987521 22235799999999753333356789999999999999999995 555555 6899
Q ss_pred EEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 558 ILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 558 ~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|.|+|+|..+. +|+|++.||+..|..+
T Consensus 545 f~V~d~d~~~~ddfiGQ~~lPv~~Lr~G 572 (598)
T PLN02230 545 VEVHEHDINEKDDFGGQTCLPVSEIRQG 572 (598)
T ss_pred EEEEECCCCCCCCEEEEEEcchHHhhCc
Confidence 99999999766 9999999999999876
|
|
| >KOG1031|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=3e-08 Score=110.07 Aligned_cols=125 Identities=22% Similarity=0.394 Sum_probs=98.4
Q ss_pred CEEEEEEEEecCCCCCCC-CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeec-eeEEEeeeeccccCcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~-~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~Wn-E~f~F~~I~~~el~~~~L~~sV~D 562 (754)
|.|.|.|+.|++|+.||. ....|.||.+.+.. ..++|.+..+++||.|| +.|.| .+...+++...|+|.|.|
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n-----~t~ktdvf~kslnp~wnsdwfkf-evddadlqdeplqi~lld 76 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFAN-----TTFKTDVFLKSLNPQWNSDWFKF-EVDDADLQDEPLQIRLLD 76 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEecc-----cceehhhhhhhcCCcccccceEE-ecChhhhccCCeeEEEec
Confidence 568899999999999994 57889999999954 78899999999999999 56888 688899999999999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCcc----ceEeecccCCCCCccccccccccccccceeEEeee
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISR----DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLC 622 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~----~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~ 622 (754)
+|.++. +-||.+.|+++.|.....- .....+..|+++-... ...+|+|.|-+.
T Consensus 77 ~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdti-------hgirgeinvivk 134 (1169)
T KOG1031|consen 77 HDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTI-------HGIRGEINVIVK 134 (1169)
T ss_pred ccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceec-------ccccceeEEEEE
Confidence 999998 9999999999987543211 1123344566553221 356788776554
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.9e-08 Score=112.45 Aligned_cols=112 Identities=21% Similarity=0.228 Sum_probs=88.3
Q ss_pred cceeecccccccccc---CC---CCCCCCceEEEEecCCCC-cceeeeeeecCCCCCcc-ceeEEEEeecCccCCCeEEE
Q psy7848 628 RALIVNLIKCTNLIP---MD---SNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIF-NEEFAIETKITELSKQTLVI 699 (754)
Q Consensus 628 g~L~V~V~~A~nL~~---~d---~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~w-NEtF~F~V~~~dL~~~~L~I 699 (754)
..|.|.|+.|.+|+. .+ .....||||+|.+.+... ..+++|+++.++.||+| ||+|.|.+...+| ..|.|
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pEL--A~lRf 508 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPEL--ALLWF 508 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCce--eEEEE
Confidence 468899999998732 11 223479999999975432 24789999989999999 9999999876665 68999
Q ss_pred EEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 700 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 700 tV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
.|+|+|..+.|+|||...|++.....++.|= .|+...|..+.
T Consensus 509 ~V~D~d~~~~d~figq~~lPv~~Lr~GYR~V-pL~~~~G~~l~ 550 (567)
T PLN02228 509 KVQDYDNDTQNDFAGQTCLPLPELKSGVRAV-RLHDRAGKAYK 550 (567)
T ss_pred EEEeCCCCCCCCEEEEEEcchhHhhCCeeEE-EccCCCCCCCC
Confidence 9999998889999999999999887777764 56666665543
|
|
| >PLN02222 phosphoinositide phospholipase C 2 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=109.16 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=77.2
Q ss_pred CEEEEEEEEecCCC--CC----CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLR--AM----DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~--~~----d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
..|.|+|+.+.++. .. +.....||||+|.+.+-.....+.+|+++.++.||+|||+|.|. +...++ ..|+|
T Consensus 452 ~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~-i~~PeL--AllRf 528 (581)
T PLN02222 452 TTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFP-LTVPEL--ALLRL 528 (581)
T ss_pred ceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEE-EEcCce--eEEEE
Confidence 57999999998753 11 12246799999999753333467789999999999999999995 555555 68999
Q ss_pred EEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 559 LVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 559 sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
.|||+|..+. +|||++.||+..|..+
T Consensus 529 ~V~d~D~~~~ddfigq~~lPv~~Lr~G 555 (581)
T PLN02222 529 EVHEYDMSEKDDFGGQTCLPVWELSQG 555 (581)
T ss_pred EEEECCCCCCCcEEEEEEcchhhhhCc
Confidence 9999998776 9999999999999865
|
|
| >PLN02228 Phosphoinositide phospholipase C | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.2e-07 Score=107.24 Aligned_cols=97 Identities=23% Similarity=0.383 Sum_probs=77.2
Q ss_pred CEEEEEEEEecCCCC---CC---CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCee-ceeEEEeeeeccccCcceEE
Q psy7848 485 CSLHVTLHRAKGLRA---MD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEF-HEKLTFYSVSETDLSLQSLH 557 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~---~d---~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~W-nE~f~F~~I~~~el~~~~L~ 557 (754)
..|.|+|+.|.+|+. .+ .....||||+|.+.+.......++|+++.++.||+| ||+|.|. +...++ ..|+
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~-~~~pEL--A~lR 507 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQ-LRVPEL--ALLW 507 (567)
T ss_pred ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEE-EEcCce--eEEE
Confidence 479999999998732 11 123479999999976433346679999998899999 9999995 444544 5899
Q ss_pred EEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 558 ILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 558 ~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|.|+|+|..+. +|||++.|||..|..+
T Consensus 508 f~V~D~d~~~~d~figq~~lPv~~Lr~G 535 (567)
T PLN02228 508 FKVQDYDNDTQNDFAGQTCLPLPELKSG 535 (567)
T ss_pred EEEEeCCCCCCCCEEEEEEcchhHhhCC
Confidence 99999998766 9999999999999765
|
|
| >KOG1264|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.7e-07 Score=107.74 Aligned_cols=95 Identities=21% Similarity=0.465 Sum_probs=76.3
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEE-eeeecCCCCCeec-eeEEEeeeeccccCcceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR-TKTCLRTINPEFH-EKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~r-Tkvi~~TlNP~Wn-E~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.|.|.|+.|++|+.. ..+.+.|||.|.+.+..-...+++ |.|+.|++||+|| |.|.|. |...+ -..|+|.|+|.
T Consensus 1066 ~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe--~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1066 TLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFE-IYNPE--FAFLRFVVYEE 1141 (1267)
T ss_pred EEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEE-eeCCc--eEEEEEEEecc
Confidence 577999999999843 456678999999987443334444 5567889999999 999994 54433 47899999999
Q ss_pred CCCCC-ccceeeeecCcccCCC
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|++++ .|||++.+|+..+..+
T Consensus 1142 Dmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cccCCcceeeeeecchhhhhcc
Confidence 99999 9999999999988654
|
|
| >KOG2060|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.6e-07 Score=99.29 Aligned_cols=120 Identities=23% Similarity=0.355 Sum_probs=91.0
Q ss_pred cceeEEeeeccccccceeeccccccccccCCC-CCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
.|+|++.++ ...|.|.|.|++|++|..... ...++||||||+++.+... +.||+...+|++|-|-+...|.-.
T Consensus 257 mg~iq~~~~--d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~s--- 331 (405)
T KOG2060|consen 257 MGDIQIALM--DSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQS--- 331 (405)
T ss_pred cccchhhhh--cccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccC---
Confidence 445444443 345899999999999977543 3368999999999776554 999999999999999888888853
Q ss_pred cCCCeEEEEEE-EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 692 LSKQTLVITVW-DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 692 L~~~~L~ItV~-D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
.....|.++|| |+..+..+.|||.++|-+...+ .-.....+||+|.+
T Consensus 332 p~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~-----------ls~~~~igwyKlfg 379 (405)
T KOG2060|consen 332 PPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELN-----------LSSSPVIGWYKLFG 379 (405)
T ss_pred CCccEEEEEEeccccccchHHHhhHHHHHhhhhc-----------cccccceeeeeccC
Confidence 45789999999 6667888899999988877532 12235667777765
|
|
| >KOG0169|consensus | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-07 Score=107.89 Aligned_cols=96 Identities=24% Similarity=0.369 Sum_probs=78.6
Q ss_pred EEEEEEEEecCCCCCC-C---CCCCCcEEEEEEeCCCCCceEEEee-eecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 486 SLHVTLHRAKGLRAMD-I---HGTSDPFCKLNLVPLTKTSHRLRTK-TCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d-~---~g~sDPYVkv~Llp~~~~~~~~rTk-vi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
.|.|.|+.+.++...- . ...+||||.|.+.+-.......+|+ |..|+-||.|+|+|.|. +...+| ..|+|.|
T Consensus 617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~-l~vPEL--AliRF~V 693 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQ-LSVPEL--ALIRFEV 693 (746)
T ss_pred eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEE-Eeccce--eEEEEEE
Confidence 6999999999766543 2 2468999999986533345678899 56678999999999994 666666 5899999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCC
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
+|+|..+. +|+|++.+|+..|..+
T Consensus 694 ~d~d~~~~ddF~GQ~tlP~~~L~~G 718 (746)
T KOG0169|consen 694 HDYDYIGKDDFIGQTTLPVSELRQG 718 (746)
T ss_pred EecCCCCcccccceeeccHHHhhCc
Confidence 99999996 9999999999999765
|
|
| >PLN02270 phospholipase D alpha | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-07 Score=109.44 Aligned_cols=108 Identities=18% Similarity=0.252 Sum_probs=86.2
Q ss_pred cceeeccccccccccCC------------------CCCCCCceEEEEecCCCCcceeeeeeecCC-CCCccceeEEEEee
Q psy7848 628 RALIVNLIKCTNLIPMD------------------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKT-LNPIFNEEFAIETK 688 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d------------------~~G~sDPYVKV~L~~~~~k~k~KT~v~kkT-lNP~wNEtF~F~V~ 688 (754)
|.|.|+|++|++|+.++ ..+.+||||.|.|. +...-+|+++.+. .||.|||.|...+.
T Consensus 8 g~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~---~a~v~rtr~~~~~~~~p~w~e~f~i~~a 84 (808)
T PLN02270 8 GTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLE---KARVGRTRKIENEPKNPRWYESFHIYCA 84 (808)
T ss_pred cceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeC---CcEEEEEeecCCCCCCCccccceEEeec
Confidence 78999999999998641 13578999999993 2348899999874 69999999988875
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCC--CCchhhhHHhhhcCCCccee
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s--~ge~~~hW~~ll~~P~~~ie 742 (754)
+. -..|+|+|.|.|.++. .+||.+.|++.. .|+..+.|++++..-+++..
T Consensus 85 h~---~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~ 136 (808)
T PLN02270 85 HM---ASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIH 136 (808)
T ss_pred cC---cceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCCcCC
Confidence 33 3789999999999875 599999999875 56678888888877666553
|
|
| >KOG1264|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.9e-07 Score=102.89 Aligned_cols=92 Identities=22% Similarity=0.292 Sum_probs=74.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCC--CcceeeeeeecCCCCCccc-eeEEEEeecCccCCCeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HKRKYKTGVKWKTLNPIFN-EEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~--~k~k~KT~v~kkTlNP~wN-EtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
-.|.|.|+.|++|+.. ..|..-|||.|.+.+.. .++.+.|.|.-+.+||+|| |+|+|.|...+ -.-|.+.|+|.
T Consensus 1065 ~~lsv~vigaRHL~k~-gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe--~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKL-GRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPE--FAFLRFVVYEE 1141 (1267)
T ss_pred eEEEEEEeeccccccC-CCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCc--eEEEEEEEecc
Confidence 4688999999999843 34556799999987543 2335555678899999999 99999997544 37899999999
Q ss_pred cCCCCCceeEEEEEecCC
Q psy7848 705 DYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s 722 (754)
|.++...|||+++.++.+
T Consensus 1142 Dmfs~~~FiaqA~yPv~~ 1159 (1267)
T KOG1264|consen 1142 DMFSDPNFLAQATYPVKA 1159 (1267)
T ss_pred cccCCcceeeeeecchhh
Confidence 999999999999999875
|
|
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.8e-07 Score=80.33 Aligned_cols=86 Identities=16% Similarity=0.261 Sum_probs=69.0
Q ss_pred EEEEEEEecCCCCCC---CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 487 LHVTLHRAKGLRAMD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 487 L~VtIi~ArnL~~~d---~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
|.|+|..|+||.-.+ ..+.+||||.+.+.+ ..+.||++ +.||.|||+|.|. +. ....+.|.|||.
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved----~~kaRTr~---srnd~WnE~F~i~-Vd----k~nEiel~VyDk 68 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVED----VERARTKP---SRNDRWNEDFEIP-VE----KNNEEEVIVYDK 68 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEECC----EEEEeccC---CCCCcccceEEEE-ec----CCcEEEEEEEeC
Confidence 679999999998877 567899999999963 35788876 5899999999984 42 247899999998
Q ss_pred CCCCCccceeeeecCcccCCC
Q psy7848 564 DKYGHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 564 d~~g~dfLGev~I~L~~L~~~ 584 (754)
.......||-.-|.+.+|...
T Consensus 69 ~~~~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 69 GGDQPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred CCCeecceeeehhhHHHHHHH
Confidence 653338899988888887543
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae | Back alignment and domain information |
|---|
Probab=98.36 E-value=6.6e-07 Score=81.12 Aligned_cols=86 Identities=15% Similarity=0.239 Sum_probs=66.8
Q ss_pred eeeccccccccccCC---CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMD---SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d---~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
|.|+|..|+||.-.+ ..+.+||||.|.+. +..+.||++ +.||.|||+|.|+|. ....++|+|||+..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKve---d~~kaRTr~---srnd~WnE~F~i~Vd----k~nEiel~VyDk~~ 70 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKVE---DVERARTKP---SRNDRWNEDFEIPVE----KNNEEEVIVYDKGG 70 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEEC---CEEEEeccC---CCCCcccceEEEEec----CCcEEEEEEEeCCC
Confidence 678999999997776 56779999999993 233888887 479999999999993 35789999999854
Q ss_pred CCCCceeEEEEEecCCCCch
Q psy7848 707 GKSNDYLGCLELCCNSKGDR 726 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~ 726 (754)
. ..--||-.-|.++..-++
T Consensus 71 ~-~~~Pi~llW~~~sdi~Ee 89 (109)
T cd08689 71 D-QPVPVGLLWLRLSDIAEE 89 (109)
T ss_pred C-eecceeeehhhHHHHHHH
Confidence 3 344588888887765443
|
This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that |
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=4.2e-06 Score=78.20 Aligned_cols=107 Identities=15% Similarity=0.256 Sum_probs=79.1
Q ss_pred eeeccccccccccCC-------C------CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeec-------
Q psy7848 630 LIVNLIKCTNLIPMD-------S------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI------- 689 (754)
Q Consensus 630 L~V~V~~A~nL~~~d-------~------~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~------- 689 (754)
|.|.|++|.+|.+.- . .--.++||++.+..-.++..++|+++-++.-|.||+.|+|.++.
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G 80 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG 80 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence 467888988886531 0 11158999999765445668999999999999999999998651
Q ss_pred ------CccCCCeEEEEEEEccCC----------CCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEee
Q psy7848 690 ------TELSKQTLVITVWDKDYG----------KSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747 (754)
Q Consensus 690 ------~dL~~~~L~ItV~D~d~~----------~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L 747 (754)
+-|....|.|+||..... ..|-.||.|.|++. +|+.+ +.-|++||++
T Consensus 81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~----------~Ll~~-rsGitGW~pi 143 (143)
T cd08683 81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLR----------DLLTK-RSGITGWYPI 143 (143)
T ss_pred ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHH----------HHhhc-ccCccccccC
Confidence 224457899999997632 24568999999986 45543 6778888875
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=97.78 E-value=9.7e-05 Score=87.66 Aligned_cols=118 Identities=13% Similarity=0.154 Sum_probs=79.5
Q ss_pred CCEEEEEEEEecCCCCC----CCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEE
Q psy7848 484 TCSLHVTLHRAKGLRAM----DIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHI 558 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~----d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~ 558 (754)
.|.|.++|.+|+-+... +.. ...||||.|.|. +....|| .+..||.|||.|.++ +.+. ....|.|
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~----~~~v~rt---~~~~~p~w~e~f~i~-~ah~--~~~~~~f 78 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG----NKKVAKT---SHEYDRVWNQTFQIL-CAHP--LDSTITI 78 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEeC----CcEEecC---CCCCCCccccceeEE-eeee--cCCcEEE
Confidence 47899999999733221 111 123999999996 3467788 556699999999874 3333 1257999
Q ss_pred EEeeCCCCCCccceeeeecCcccCCCCc-cceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 559 LVLDDDKYGHDFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 559 sV~D~d~~g~dfLGev~I~L~~L~~~~~-~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
.|.| +..+||.+.||+.+|..+.. .+-|+++.. .. +.. ... ..|+|+|+|.|.
T Consensus 79 ~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~------~~---~~p-~~~-~~~~~~~~~~~~ 132 (758)
T PLN02352 79 TLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIM------EN---GKP-NPE-LKLRFMLWFRPA 132 (758)
T ss_pred EEec----CCeEEEEEEEEHHHhhCCCcccceEEEccc------CC---CCC-CCC-CEEEEEEEEEEh
Confidence 9988 45899999999999987644 555555532 11 011 112 588899988654
|
|
| >KOG2060|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.9e-05 Score=82.93 Aligned_cols=111 Identities=23% Similarity=0.366 Sum_probs=88.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~-~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...|.|++.+-- ..+.|.|-|++|++|..... ...++|||+||+++.+.-..+.+|+...+|++|.|.+.+.|.
T Consensus 255 P~mg~iq~~~~d--~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~--- 329 (405)
T KOG2060|consen 255 PNMGDIQIALMD--SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD--- 329 (405)
T ss_pred cccccchhhhhc--ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc---
Confidence 457777776532 56899999999999987763 347899999999986655567889999999999999988873
Q ss_pred ccccCcceEEEEEee-CCCCCC-ccceeeeecCcccCCCC
Q psy7848 548 ETDLSLQSLHILVLD-DDKYGH-DFLGEARFPLNRLRPHI 585 (754)
Q Consensus 548 ~~el~~~~L~~sV~D-~d~~g~-dfLGev~I~L~~L~~~~ 585 (754)
+-+....|++.||. +.+.-+ .|+|.+.|-+.+|....
T Consensus 330 -~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~ 368 (405)
T KOG2060|consen 330 -QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSS 368 (405)
T ss_pred -cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhcccc
Confidence 44556999999996 555555 99999999999987653
|
|
| >cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.4e-05 Score=70.95 Aligned_cols=104 Identities=27% Similarity=0.454 Sum_probs=74.7
Q ss_pred EEEEEEEecCCCCCC-----------C--CCCCCcEEEEEE--eCCCCCceEEEeeeecCCCCCeeceeEEEeeee----
Q psy7848 487 LHVTLHRAKGLRAMD-----------I--HGTSDPFCKLNL--VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS---- 547 (754)
Q Consensus 487 L~VtIi~ArnL~~~d-----------~--~g~sDPYVkv~L--lp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~---- 547 (754)
|.|.|++|.+|.... . .-..|+||++++ +| ....++|+++.++..|+|+-.+.|. .+
T Consensus 1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~---~~e~r~TrtVArSFcPeF~Hh~Efp-c~lv~~ 76 (143)
T cd08683 1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLP---EKELRRTRTVARSFCPEFNHHVEFP-CNLVVQ 76 (143)
T ss_pred CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCC---CCceeeccchhhhcCCCccceEEEe-cccEEE
Confidence 468889999886431 0 113689999996 44 3467899999999999999999884 22
Q ss_pred ---------ccccCcceEEEEEeeCCCCCC-----------ccceeeeecCcccCCCCccceEeecccCCCC
Q psy7848 548 ---------ETDLSLQSLHILVLDDDKYGH-----------DFLGEARFPLNRLRPHISRDLCLNLCKHYPV 599 (754)
Q Consensus 548 ---------~~el~~~~L~~sV~D~d~~g~-----------dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l 599 (754)
.+.|....+.|+|||....++ -+||.+.||+.+|..... -+..||++
T Consensus 77 ~~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rs-----GitGW~pi 143 (143)
T cd08683 77 RNSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRS-----GITGWYPI 143 (143)
T ss_pred cCCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhccc-----CccccccC
Confidence 123456789999999875332 479999999999875422 25566653
|
C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc |
| >cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus) | Back alignment and domain information |
|---|
Probab=97.55 E-value=6.9e-05 Score=65.65 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=72.7
Q ss_pred EEEEEEecCCCCCCCCC-CCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 488 HVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 488 ~VtIi~ArnL~~~d~~g-~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
-|+|+.|+||.-....| ...-|++=-+.-. +...+||.+.++..||+|.|+|.| .|...++..-+|.|+|+. ..-
T Consensus 2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~--kpv~~KsS~rrgs~d~~f~ETFVF-qi~l~qL~~V~L~fsv~~-~~~ 77 (103)
T cd08684 2 WITVLKCKDLSWPSSCGENPTIYIKGILTLP--KPVHFKSSAKEGSNDIEFMETFVF-AIKLQNLQTVRLVFKIQT-QTP 77 (103)
T ss_pred EEEEEEecccccccccCcCCeeEEEEEEecC--CCccccchhhcCCCChhHHHHHHH-HHHHhhccceEEEEEeec-cCC
Confidence 48999999997654333 3344666555322 336788999999999999999999 477888888999999998 332
Q ss_pred CCccceeeeecCcccCCCCccceE
Q psy7848 567 GHDFLGEARFPLNRLRPHISRDLC 590 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~~~~~~~~ 590 (754)
.++.||.+.+.++++-.+ ...+|
T Consensus 78 RKe~iG~~sL~l~s~gee-E~~HW 100 (103)
T cd08684 78 RKRTIGECSLSLRTLSTQ-ETDHW 100 (103)
T ss_pred ccceeeEEEeecccCCHH-Hhhhh
Confidence 339999999999987544 33344
|
Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos |
| >PLN02352 phospholipase D epsilon | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00034 Score=83.16 Aligned_cols=102 Identities=14% Similarity=0.188 Sum_probs=70.1
Q ss_pred cceeeccccccccccC----CC-CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 628 RALIVNLIKCTNLIPM----DS-NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~----d~-~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
|.|.++|.+|+.+... .. +...||||.|.|. +...-+| .+..||.|||.|...+.+ ..+..|+|+|.
T Consensus 10 g~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~---~~~v~rt---~~~~~p~w~e~f~i~~ah--~~~~~~~f~vk 81 (758)
T PLN02352 10 GTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIG---NKKVAKT---SHEYDRVWNQTFQILCAH--PLDSTITITLK 81 (758)
T ss_pred cceEEEEEEeeehhhcccccccccCCCCceEEEEeC---CcEEecC---CCCCCCccccceeEEeee--ecCCcEEEEEe
Confidence 6777888888743221 11 1123999999993 2236678 556699999998888753 33467999999
Q ss_pred EccCCCCCceeEEEEEecCC--CCch-hhhHHhhhcCCCccee
Q psy7848 703 DKDYGKSNDYLGCLELCCNS--KGDR-LRHWVDMMKYPDHKHE 742 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s--~ge~-~~hW~~ll~~P~~~ie 742 (754)
| .-.+||.+.|++.. .|+. .+.|++++..-+++..
T Consensus 82 ~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~ 119 (758)
T PLN02352 82 T-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNP 119 (758)
T ss_pred c-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCC
Confidence 8 25789999999875 3433 7777777776655553
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0003 Score=82.85 Aligned_cols=89 Identities=16% Similarity=0.170 Sum_probs=72.5
Q ss_pred eccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEE
Q psy7848 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITV 701 (754)
Q Consensus 622 ~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV 701 (754)
.-.+-.|.+.++++.|+ |+. .|+|..+-.. +.+.+||.+.++|+||+||+...|.|.+.++ ....|.|
T Consensus 48 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~---g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~--~~~~~~~ 115 (644)
T PLN02964 48 SAEDFSGIALLTLVGAE----MKF---KDKWLACVSF---GEQTFRTETSDSTDKPVWNSEKKLLLEKNGP--HLARISV 115 (644)
T ss_pred ecccccCeEEEEeehhh----hcc---CCcEEEEEEe---cceeeeeccccccCCcccchhhceEeccCCc--ceEEEEE
Confidence 33455688888998887 433 6888766543 6679999999999999999999999876654 3469999
Q ss_pred EEccCCCCCceeEEEEEecCC
Q psy7848 702 WDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s 722 (754)
||++.++.|+++|.|.+++..
T Consensus 116 ~~~~~~s~n~lv~~~e~~~t~ 136 (644)
T PLN02964 116 FETNRLSKNTLVGYCELDLFD 136 (644)
T ss_pred EecCCCCHHHhhhheeecHhh
Confidence 999999999999999998765
|
|
| >KOG1327|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0012 Score=75.23 Aligned_cols=111 Identities=24% Similarity=0.333 Sum_probs=93.5
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEe-CCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLV-PLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Ll-p~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...|.|.+.+.-+..........++|++|...|..+.+|||..++-. .+.+....++|.++.+++||.|-+.. |+
T Consensus 120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~~~----i~ 195 (529)
T KOG1327|consen 120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAPFS----IS 195 (529)
T ss_pred CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccccc----cc
Confidence 46899999999888888888888899999999999999999999875 35666778999999999999998743 23
Q ss_pred ccccC----cceEEEEEeeCCCCCC-ccceeeeecCcccCC
Q psy7848 548 ETDLS----LQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583 (754)
Q Consensus 548 ~~el~----~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~ 583 (754)
...+. ...+++.+||++..+. ++||++..++.++..
T Consensus 196 ~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 196 LQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred hhhhcccCCCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 33332 3789999999999988 999999999998864
|
|
| >PLN02964 phosphatidylserine decarboxylase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0019 Score=76.37 Aligned_cols=90 Identities=16% Similarity=0.211 Sum_probs=70.3
Q ss_pred ECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 481 DSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 481 d~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
+.-.|...++|+.|+ |+. .|+|..+-.. +.+.+||.+.++|+||+||+.-.| .+...++ ...+|.|
T Consensus 50 ~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~----g~~~f~t~~~~~~~~p~~~~~~~~-~~~~~~~--~~~~~~~ 115 (644)
T PLN02964 50 EDFSGIALLTLVGAE----MKF---KDKWLACVSF----GEQTFRTETSDSTDKPVWNSEKKL-LLEKNGP--HLARISV 115 (644)
T ss_pred ccccCeEEEEeehhh----hcc---CCcEEEEEEe----cceeeeeccccccCCcccchhhce-EeccCCc--ceEEEEE
Confidence 334688889999997 443 5887655543 458999999999999999998887 3555544 4569999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCC
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
||.+.+.. +++|-++++|.++...
T Consensus 116 ~~~~~~s~n~lv~~~e~~~t~f~~k 140 (644)
T PLN02964 116 FETNRLSKNTLVGYCELDLFDFVTQ 140 (644)
T ss_pred EecCCCCHHHhhhheeecHhhccHH
Confidence 99999998 9999999988776544
|
|
| >KOG3837|consensus | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.00057 Score=74.73 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=96.2
Q ss_pred EEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec-----cc
Q psy7848 476 LTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE-----TD 550 (754)
Q Consensus 476 ~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~-----~e 550 (754)
+.+.-+..+..|.+.|+++.+++........|-||++.+.-.....++.+|.++++|..|.|+|.|.+. |-. .+
T Consensus 358 v~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fkln-i~rg~~~nr~ 436 (523)
T KOG3837|consen 358 VAFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLN-IRRGPGLNRE 436 (523)
T ss_pred hhhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeee-ccCCCcccHH
Confidence 344445567889999999999987654455688999887422223478899999999999999999873 433 11
Q ss_pred ----cCcceEEEEEeeCCCCCC--ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 551 ----LSLQSLHILVLDDDKYGH--DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 551 ----l~~~~L~~sV~D~d~~g~--dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
+....+.|+||+...|-+ .|+|.+.|.|..|.......+.++|.+ .....-|.|.|.+..-
T Consensus 437 fqR~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~D-------------GRK~vGGkLevKvRiR 503 (523)
T KOG3837|consen 437 FQRRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKD-------------GRKAVGGKLEVKVRIR 503 (523)
T ss_pred HHHHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccc-------------cccccCCeeEEEEEEe
Confidence 224679999999998866 899999999998866545444444431 1135567777777653
|
|
| >KOG1265|consensus | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0021 Score=75.81 Aligned_cols=93 Identities=19% Similarity=0.349 Sum_probs=72.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecC--CCCc-ceeeeeeec-CCCCCccce-eEEEE-eecCccCCCeEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP--DLHK-RKYKTGVKW-KTLNPIFNE-EFAIE-TKITELSKQTLVITV 701 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~--~~~k-~k~KT~v~k-kTlNP~wNE-tF~F~-V~~~dL~~~~L~ItV 701 (754)
+.+.|.|+.+.=|..++.+ .||.|.|.+ .+.. +.++|+++. +.+||+||| .|.|. |-..+| ..|.|.|
T Consensus 703 ~t~sV~VISgqFLSdrkvg----tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRKVG----TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeeccccccC----ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeee
Confidence 6789999999989776554 799999874 3333 477888754 678999996 58897 544454 7899999
Q ss_pred EEccCCCCCceeEEEEEecCCCCchhhhH
Q psy7848 702 WDKDYGKSNDYLGCLELCCNSKGDRLRHW 730 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s~ge~~~hW 730 (754)
|+. .+.|||+=.|++++...++.|-
T Consensus 777 yeE----ggK~ig~RIlpvd~l~~GYrhv 801 (1189)
T KOG1265|consen 777 YEE----GGKFIGQRILPVDGLNAGYRHV 801 (1189)
T ss_pred ecc----CCceeeeeccchhcccCcceeE
Confidence 985 3679999999999887777763
|
|
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0095 Score=59.60 Aligned_cols=93 Identities=13% Similarity=0.170 Sum_probs=68.5
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccCC-CeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~-~~L~ItV~D~ 704 (754)
..+.|.|+.+.+|.. .....+.||++.|..+.... ...|..+.-..++.|||.+.|+|...+|.. ..|.|+||+.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~ 85 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV 85 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence 467899999999976 33457889999887543221 445665554567999999999998888864 6799999997
Q ss_pred cCCC----------------CCceeEEEEEecCC
Q psy7848 705 DYGK----------------SNDYLGCLELCCNS 722 (754)
Q Consensus 705 d~~~----------------~ddfLG~v~L~l~s 722 (754)
.... ....||.+.+.+-+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred cccccccccccccccccccCcceEEEEEeEEEEc
Confidence 6322 24689999999754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >KOG1265|consensus | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0069 Score=71.73 Aligned_cols=91 Identities=24% Similarity=0.472 Sum_probs=71.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEE--eCCCCCceEEEeeeec-CCCCCeecee-EEEeeeeccccCcceEEEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNL--VPLTKTSHRLRTKTCL-RTINPEFHEK-LTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~L--lp~~~~~~~~rTkvi~-~TlNP~WnE~-f~F~~I~~~el~~~~L~~sV 560 (754)
+.|.|+|+.+.=|..++ ...||.|.+ +|.......+||+++. |++||+|+|+ |.|.-|-..+| ..|+|.|
T Consensus 703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeL--A~lRiav 776 (1189)
T KOG1265|consen 703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPEL--ASLRIAV 776 (1189)
T ss_pred eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccch--hheeeee
Confidence 35789999999887665 348999998 4544444678888865 5799999965 88876666655 5899999
Q ss_pred eeCCCCCCccceeeeecCcccCCC
Q psy7848 561 LDDDKYGHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~dfLGev~I~L~~L~~~ 584 (754)
|+.+. .|||+-.+|+..|..+
T Consensus 777 yeEgg---K~ig~RIlpvd~l~~G 797 (1189)
T KOG1265|consen 777 YEEGG---KFIGQRILPVDGLNAG 797 (1189)
T ss_pred eccCC---ceeeeeccchhcccCc
Confidence 99765 6999999999999765
|
|
| >PF05715 zf-piccolo: Piccolo Zn-finger; InterPro: IPR008899 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0021 Score=51.88 Aligned_cols=58 Identities=26% Similarity=0.727 Sum_probs=42.2
Q ss_pred cccccccccCCCccccccccCC-CCccccccccccccccccccccCCCCCCceeeccchhhhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGA-KCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREM 198 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~-~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel 198 (754)
..|.+|..++. .|.-+. -.+.|-.|+..||.-||.--...-.....|||--|+.+|-|
T Consensus 3 ~~CPlCkt~~n-----~gsk~~pNyntCT~Ck~~VCnlCGFNP~Phl~E~~eWLCLnCQ~qRal 61 (61)
T PF05715_consen 3 SLCPLCKTTLN-----VGSKDPPNYNTCTECKSQVCNLCGFNPTPHLTEVKEWLCLNCQMQRAL 61 (61)
T ss_pred ccCCcccchhh-----cCCCCCCCccHHHHHhhhhhcccCCCCCccccccceeeeecchhhhcC
Confidence 68999999986 111222 26899999999999999865312223468999999999853
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This (predicted) zinc finger is found in the bassoon and piccolo proteins, both of which are components of the presynaptic cytoskeletal matrix (PCM) assembled at the active zone of neurotransmitter release, where Piccolo plays a role in the trafficking of synaptic vesicles (SVs) [, , ]. The Piccolo zinc fingers were found to interact with the dual prenylated rab3A and VAMP2/Synaptobrevin II receptor PRA1. There are eight conserved cysteines in Piccolo-type zinc fingers, suggesting that they coordinates two zinc ligands. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding, 0045202 synapse |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.013 Score=57.83 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=59.3
Q ss_pred CCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 646 NGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 646 ~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
...+|-||.+.|..++... -..|..+.-+..+.|||...|+|...+|. +..|.|+|||.+..+....||.+.+++-+
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3458899999987653221 44666666566788999999999888886 46899999998866667799999999754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.018 Score=56.78 Aligned_cols=91 Identities=13% Similarity=0.069 Sum_probs=66.1
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~ 704 (754)
..+.|.|+.+.++... ..+|-||.+.+..++..- ...|..+.- .++.|||.+.|+|...+|. +..|.|+||+.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~ 83 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV 83 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence 4678899999988653 357999999887643221 334544443 6799999999999888886 46899999997
Q ss_pred cCCC----CCceeEEEEEecCC
Q psy7848 705 DYGK----SNDYLGCLELCCNS 722 (754)
Q Consensus 705 d~~~----~ddfLG~v~L~l~s 722 (754)
.... ....||.+.+.|-+
T Consensus 84 ~~~~~~k~~~~~iG~~ni~LFd 105 (158)
T cd08398 84 KGRKGAKEEHCPLAWGNINLFD 105 (158)
T ss_pred ecccCCCCceEEEEEEEEEEEC
Confidence 6422 22569999999754
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.3 Score=53.92 Aligned_cols=218 Identities=15% Similarity=0.162 Sum_probs=130.8
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc-----cCcceEEEEEe
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD-----LSLQSLHILVL 561 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e-----l~~~~L~~sV~ 561 (754)
+.|+|++++|.+... ...-.+...+. .....|..+..+-.|.||.++.+ .++... +++..|++..|
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~n-----g~~l~TDpv~~~~~p~f~teL~W-E~Dr~~l~~~r~~~tPiKl~c~ 72 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKFN-----GESLETDPVPHTESPQFNTELAW-ECDRKALKQHRLQRTPIKLQCF 72 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEeC-----CceeeecCCCCCCCceeecceee-eccHHHHHHhhccCCceEEEEE
Confidence 679999999998762 23456677774 37888999999999999999987 344333 34678999999
Q ss_pred eCC-CCCC-ccceeeeecCccc---CCC--CccceEeecccC---CC-CCcc----------ccc--------ccccccc
Q psy7848 562 DDD-KYGH-DFLGEARFPLNRL---RPH--ISRDLCLNLCKH---YP-VPRE----------EEV--------WGEEECW 612 (754)
Q Consensus 562 D~d-~~g~-dfLGev~I~L~~L---~~~--~~~~~~~~L~~~---~~-l~~~----------~~~--------~~~~~~~ 612 (754)
..| ..+. +.||.+.++|..+ ... .....|+.|... |. .+++ ... .......
T Consensus 73 a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~~~~~~~~~~~~~~~~p~ 152 (340)
T PF12416_consen 73 AVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDSKPQTPDFESFKAKPAPP 152 (340)
T ss_pred EecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccccccCCccccccccCCCc
Confidence 988 3344 9999999999988 433 333445554321 11 1111 000 0000011
Q ss_pred ccc------------eeEEee----ecc--------ccccceeeccccccccccCC----C--CCCCCceEEEEecCCCC
Q psy7848 613 QHG------------KIFLTL----CFS--------TKKRALIVNLIKCTNLIPMD----S--NGFSDPFIKLYLKPDLH 662 (754)
Q Consensus 613 ~~G------------eL~VsL----~y~--------p~~g~L~V~V~~A~nL~~~d----~--~G~sDPYVKV~L~~~~~ 662 (754)
..| .+.+.+ .|. .....|.|.|..|.||..+- . .+...-|....+++.
T Consensus 153 ~~~~~~~~~~~~~~~~l~~~l~~~eg~lQIGp~~~~~d~FvLsvti~~a~nL~~Lip~~l~~~~~~~~f~f~YsllGn-- 230 (340)
T PF12416_consen 153 RQGHVPPPNSLLSPATLIPVLLEDEGLLQIGPPDLCCDLFVLSVTIKFAENLEQLIPSSLPEEQNHSGFFFYYSLLGN-- 230 (340)
T ss_pred ccCCCcccccccCccceeEEEccCCceEeeCCchhcCceEEEEEehhhhhhHHhhccccccccCCCccEEEEEEecCc--
Confidence 122 111111 111 11246789999999986652 1 123445555556533
Q ss_pred cceeeeeeecCCCCCccc--eeEEEEeecC--cc-----CCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 663 KRKYKTGVKWKTLNPIFN--EEFAIETKIT--EL-----SKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 663 k~k~KT~v~kkTlNP~wN--EtF~F~V~~~--dL-----~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
...|.......+|.|- +.-.|.|... .| ....|.|.++- .+..||.+.|++..
T Consensus 231 --~Vt~~~F~~l~~~~f~~er~s~vRirSS~~~L~~yf~~~~~L~I~Lc~-----g~~~Lg~~~v~l~~ 292 (340)
T PF12416_consen 231 --DVTTEPFKSLSSPSFPPERASGVRIRSSLRVLRRYFQQIPKLQIHLCC-----GNQSLGSTSVPLQP 292 (340)
T ss_pred --EeEeeeccccCCCCcCeeeeeEEeecccHHHHHHHHhhCCCeEEEEee-----CCcEEEEEEEEhhh
Confidence 3455667777788664 3332555421 11 12578888886 36779999999875
|
|
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.017 Score=56.58 Aligned_cols=93 Identities=13% Similarity=0.079 Sum_probs=65.4
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEcc
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKD 705 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~d 705 (754)
.+.|.|....++.. ......+-||.+.|..+.... ...|.......++.|||.+.|++...+|. +..|.|+||+.+
T Consensus 9 ~~~i~i~~~~~~~~-~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~ 87 (156)
T cd08380 9 NLRIKIHGITNINL-LDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS 87 (156)
T ss_pred CeEEEEEeeccccc-cCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence 45666666666654 123457889999887643211 34444444346899999999998777776 467999999987
Q ss_pred CCC--CCceeEEEEEecCC
Q psy7848 706 YGK--SNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~--~ddfLG~v~L~l~s 722 (754)
..+ ....||.+.+.+-+
T Consensus 88 ~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 88 EPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred cCCCCcceEEEEEeEEeEc
Confidence 654 46789999999754
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.14 Score=50.26 Aligned_cols=131 Identities=19% Similarity=0.268 Sum_probs=90.2
Q ss_pred CcCCEEEEEEEEecCCCCCCCC--CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc------c--
Q psy7848 482 STTCSLHVTLHRAKGLRAMDIH--GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD------L-- 551 (754)
Q Consensus 482 ~~~~~L~VtIi~ArnL~~~d~~--g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e------l-- 551 (754)
+....|+|.|..++-....-.. +..+..+.+++.- ..++++|+.+..+.+|.|+|.|.|. +..+. .
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f---~~QRF~S~~Vp~~~eP~f~e~Flf~-l~~~~~~~~~~~~~ 81 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF---RGQRFRSKPVPCACEPDFNEEFLFE-LPRDSFGAGSTATT 81 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe---cCceEecCCcccccCCCCCCcEEEE-ecccccccccchhH
Confidence 4456799999998866433211 5566677777654 4589999999999999999999995 44332 1
Q ss_pred ---CcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCcc--ceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 552 ---SLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR--DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 552 ---~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~--~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
....|++.|.-.|..+. .++|+..+.-..+...... .+.+.|... +.......|-|.+++...|
T Consensus 82 lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~----------~~e~kv~~GiL~l~lELlP 151 (156)
T PF15627_consen 82 LLSISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGV----------GPESKVPVGILDLRLELLP 151 (156)
T ss_pred hhcCCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEecc----------CCCCccceeEEEEEEEeec
Confidence 13678999999999888 9999999988877655343 333333211 1111346788888887766
Q ss_pred c
Q psy7848 626 K 626 (754)
Q Consensus 626 ~ 626 (754)
.
T Consensus 152 ~ 152 (156)
T PF15627_consen 152 N 152 (156)
T ss_pred C
Confidence 4
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.041 Score=54.91 Aligned_cols=95 Identities=16% Similarity=0.133 Sum_probs=68.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeec----CCCCCccceeEEEEeecCccC-CCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKW----KTLNPIFNEEFAIETKITELS-KQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~k----kTlNP~wNEtF~F~V~~~dL~-~~~L~It 700 (754)
..+.|.|..+.+++........|-||.+.|..+.... ...|+... -...+.|||.+.|++...+|. +..|.|+
T Consensus 8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it 87 (171)
T cd04012 8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT 87 (171)
T ss_pred ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence 4677888899999887666678999999887643221 33443211 123567999999998777776 4689999
Q ss_pred EEEccCCC---------CCceeEEEEEecCC
Q psy7848 701 VWDKDYGK---------SNDYLGCLELCCNS 722 (754)
Q Consensus 701 V~D~d~~~---------~ddfLG~v~L~l~s 722 (754)
||+..... ....||.+.+.|-+
T Consensus 88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd 118 (171)
T cd04012 88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFD 118 (171)
T ss_pred EEEEecCCccccccccccceEEEEEeEeeEc
Confidence 99977544 45789999999764
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.1 Score=52.23 Aligned_cols=94 Identities=17% Similarity=0.188 Sum_probs=64.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~ 561 (754)
...|.|+|+.+.+|... ....+-||.+.|-.+. .-.....|+.+.-..++.|||.+.|. |...+|. ...|.|+||
T Consensus 7 ~~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~-I~i~dLPr~ArLciti~ 83 (173)
T cd08693 7 EEKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFD-INVCDLPRMARLCFAIY 83 (173)
T ss_pred CCCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcc-cchhcCChhHeEEEEEE
Confidence 35799999999999862 2345678887764322 11233456655555679999999994 7776665 488999999
Q ss_pred eCCCCC----------------C-ccceeeeecCcc
Q psy7848 562 DDDKYG----------------H-DFLGEARFPLNR 580 (754)
Q Consensus 562 D~d~~g----------------~-dfLGev~I~L~~ 580 (754)
+..... . ..||.+.++|-+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd 119 (173)
T cd08693 84 EVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFD 119 (173)
T ss_pred EecccccccccccccccccccCcceEEEEEeEEEEc
Confidence 975321 2 578887777765
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.099 Score=52.56 Aligned_cols=93 Identities=15% Similarity=0.127 Sum_probs=61.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCccCC-CeEEEEEEEccC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWDKDY 706 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~-~~L~ItV~D~d~ 706 (754)
.+.|.|..+.++ ..+.+.....||++.|..+.... ...|..+.-+.++.|||.+.|+|...||.. ..|.|+||+...
T Consensus 11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~ 89 (178)
T cd08399 11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA 89 (178)
T ss_pred CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence 455666666533 33333335578888776532211 345666666678999999999998888864 679999999632
Q ss_pred CC----------------CCceeEEEEEecCC
Q psy7848 707 GK----------------SNDYLGCLELCCNS 722 (754)
Q Consensus 707 ~~----------------~ddfLG~v~L~l~s 722 (754)
.. .+..||.+.+.|-+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD 121 (178)
T cd08399 90 PALSSKKSAESPSSESKGKHQLLYYVNLLLID 121 (178)
T ss_pred CcccccccccccccccccccceEEEEEEEEEc
Confidence 11 25578888888654
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.12 Score=50.91 Aligned_cols=93 Identities=13% Similarity=0.108 Sum_probs=65.6
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~ 561 (754)
+..|.|+|+.+.++... ...|-||.+.+-.+.. -.....|..+.. .++.|||.+.|. |...++. ...|.|+||
T Consensus 7 ~~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fp-I~i~dLPr~ArL~iti~ 81 (158)
T cd08398 7 NSNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYD-IYIPDLPRSARLCLSIC 81 (158)
T ss_pred CCCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcc-cchhcCChhheEEEEEE
Confidence 35789999999999864 3468899988754221 112234544443 679999999995 7777765 488999999
Q ss_pred eCCCC----CC-ccceeeeecCccc
Q psy7848 562 DDDKY----GH-DFLGEARFPLNRL 581 (754)
Q Consensus 562 D~d~~----g~-dfLGev~I~L~~L 581 (754)
+.... .. ..||.+.++|-+-
T Consensus 82 ~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 82 SVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred EEecccCCCCceEEEEEEEEEEECC
Confidence 97542 12 6799999998763
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c |
| >KOG3837|consensus | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.052 Score=59.89 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=74.1
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCC-CCcceeeeeeecCCCCCccceeEEEEeecCc---------cCCCe
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWKTLNPIFNEEFAIETKITE---------LSKQT 696 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~-~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~d---------L~~~~ 696 (754)
...|.+.|.++.+++.....-..|.||++.+.-. +...+.||.+++.|..|.|+|.|...|.... .....
T Consensus 366 d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g 445 (523)
T KOG3837|consen 366 DQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLG 445 (523)
T ss_pred hhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcC
Confidence 3568899999999877644445788999986422 2345889999999999999999999986521 12368
Q ss_pred EEEEEEEcc-CCCCCceeEEEEEecC
Q psy7848 697 LVITVWDKD-YGKSNDYLGCLELCCN 721 (754)
Q Consensus 697 L~ItV~D~d-~~~~ddfLG~v~L~l~ 721 (754)
+.|+||.+. .+.+|.++|.+.|-+.
T Consensus 446 ~kfeifhkggf~rSdkl~gt~nikle 471 (523)
T KOG3837|consen 446 KKFEIFHKGGFNRSDKLTGTGNIKLE 471 (523)
T ss_pred eeEEEeeccccccccceeceeeeeeh
Confidence 999999987 4678999999999876
|
|
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.14 Score=49.34 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=52.9
Q ss_pred CceEEEEecCCCCcc---eeeeeeecCC-CCCccceeEEEEeecCccCC-CeEEEEEEEccCCCCC----ceeEEEEEec
Q psy7848 650 DPFIKLYLKPDLHKR---KYKTGVKWKT-LNPIFNEEFAIETKITELSK-QTLVITVWDKDYGKSN----DYLGCLELCC 720 (754)
Q Consensus 650 DPYVKV~L~~~~~k~---k~KT~v~kkT-lNP~wNEtF~F~V~~~dL~~-~~L~ItV~D~d~~~~d----dfLG~v~L~l 720 (754)
+.||.+.|..++... ...|..+.-+ .++.|||.+.|+|...+|.. ..|.|+||+.+....+ ..||.+.+.+
T Consensus 3 ~~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 3 KLYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred eEEEEEEEEECCEEeecCeeeccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 457888876543222 3367766665 79999999999998888864 5799999998876555 6999999997
Q ss_pred CC
Q psy7848 721 NS 722 (754)
Q Consensus 721 ~s 722 (754)
-+
T Consensus 83 Fd 84 (142)
T PF00792_consen 83 FD 84 (142)
T ss_dssp B-
T ss_pred EC
Confidence 54
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.19 Score=49.11 Aligned_cols=96 Identities=19% Similarity=0.217 Sum_probs=65.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEe
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVL 561 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~ 561 (754)
+..++|+|....++...+ ....+-||.+.|-.+.. -.....|.......++.|||.+.|. |...+|. ...|.|+||
T Consensus 7 ~~~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~-i~~~~LP~~arL~itl~ 84 (156)
T cd08380 7 NFNLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFD-ILISDLPREARLCLSIY 84 (156)
T ss_pred CCCeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEcc-chhhcCChhheEEEEEE
Confidence 356788888888876521 23456788887743221 1223345444434689999999995 5555554 488999999
Q ss_pred eCCCCC--C-ccceeeeecCccc
Q psy7848 562 DDDKYG--H-DFLGEARFPLNRL 581 (754)
Q Consensus 562 D~d~~g--~-dfLGev~I~L~~L 581 (754)
+.+..+ . ..||.+.++|-+.
T Consensus 85 ~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 85 AVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred EEecCCCCcceEEEEEeEEeEcc
Confidence 987654 3 8899999999864
|
C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm |
| >cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1; | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.035 Score=44.71 Aligned_cols=52 Identities=25% Similarity=0.676 Sum_probs=41.9
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccccCC---CCCCceeeccchh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSAS---KKENIWLCKICAE 194 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~---~~~~~WlC~vC~~ 194 (754)
...|..|++.|+ +..+.+.|..|.+.+|..|..+..... ...+..+|..|..
T Consensus 2 ~~~C~~C~~~F~--------~~~rk~~Cr~Cg~~~C~~C~~~~~~~~~~~~~~~~rvC~~C~~ 56 (57)
T cd00065 2 ASSCMGCGKPFT--------LTRRRHHCRNCGRIFCSKCSSNRIPLPSMGGGKPVRVCDSCYE 56 (57)
T ss_pred cCcCcccCcccc--------CCccccccCcCcCCcChHHcCCeeecCcccCCCccEeChHHhC
Confidence 478999999999 467799999999999999998886311 2346789998864
|
|
| >PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.03 Score=47.07 Aligned_cols=55 Identities=27% Similarity=0.703 Sum_probs=33.3
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccccc-----CCCCCCceeeccchhhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS-----ASKKENIWLCKICAETRE 197 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~-----~~~~~~~WlC~vC~~~re 197 (754)
...|..|++.|+ +..+.+.|..|++.||.+|...... ....+..-+|..|...-+
T Consensus 9 ~~~C~~C~~~F~--------~~~rrhhCr~CG~~vC~~Cs~~~~~~~~~~~~~~~~~RvC~~C~~~~~ 68 (69)
T PF01363_consen 9 ASNCMICGKKFS--------LFRRRHHCRNCGRVVCSSCSSQRIPLPTPSSGSGEPVRVCDSCYSKLQ 68 (69)
T ss_dssp -SB-TTT--B-B--------SSS-EEE-TTT--EEECCCS-EEEEET--GGTESEEEEE-HHHHHHHH
T ss_pred CCcCcCcCCcCC--------CceeeEccCCCCCEECCchhCCEEcccccccCCCCcCEECHHHHHHhc
Confidence 489999999999 5577999999999999999986641 122345788998887543
|
Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A .... |
| >smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1 | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.059 Score=45.15 Aligned_cols=54 Identities=24% Similarity=0.635 Sum_probs=42.7
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccccCCC---CCCceeeccchhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASK---KENIWLCKICAETR 196 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~---~~~~WlC~vC~~~r 196 (754)
...|..|++.|+ +....+.|..|+..||..|......... ..+.-+|..|....
T Consensus 10 ~~~C~~C~~~F~--------~~~rk~hCr~CG~i~C~~C~~~~~~~~~~~~~~p~rvC~~C~~~~ 66 (68)
T smart00064 10 VSNCMGCGKEFN--------LTKRRHHCRNCGRIFCSKCSSKKAPLPKLGIERPVRVCDDCYENL 66 (68)
T ss_pred CCcCcccCcccc--------CcccccccccCCCCcChHHcCCeeecCccCCCCCcEECHHHHHHh
Confidence 478999999999 5567999999999999999987753111 13678999998654
|
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.23 Score=45.00 Aligned_cols=77 Identities=18% Similarity=0.198 Sum_probs=51.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEEccC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWDKDY 706 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D~d~ 706 (754)
+.+.+..+.++........+|-||.+.|..++... ...|..+.-...+.|||...|+|...+|. +..|.|+||+...
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~ 92 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN 92 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence 44455555555443333346899999987543221 33566555555689999999998888876 4679999998653
|
Outlier of C2 family. |
| >cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=92.84 E-value=0.27 Score=48.61 Aligned_cols=77 Identities=21% Similarity=0.160 Sum_probs=55.1
Q ss_pred CCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 504 GTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 504 g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
..+|-||.+.|-.++. -.....|..+.-+..+.|||.+.|. |...++. ...|.|+||+.+..+. ..||.+.++|-+
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fp-I~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd 106 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLP-IKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFN 106 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcc-cchhcCChhheEEEEEEEecCCCCceEEEEEEEeeEC
Confidence 3467788777643221 1123355555555678899999995 7777775 4889999999887666 899999999986
Q ss_pred c
Q psy7848 581 L 581 (754)
Q Consensus 581 L 581 (754)
-
T Consensus 107 ~ 107 (159)
T cd08397 107 K 107 (159)
T ss_pred C
Confidence 4
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty |
| >PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.41 Score=52.89 Aligned_cols=87 Identities=16% Similarity=0.217 Sum_probs=68.0
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC-----ccCCCeEEEEEEEc
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT-----ELSKQTLVITVWDK 704 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~-----dL~~~~L~ItV~D~ 704 (754)
+.|.|++|+|.+... .-...|...+ +....-|..+-.+-.|.||-...+++... -+++..|+|++|--
T Consensus 2 ivl~i~egr~F~~~~---~~~~vv~a~~----ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~ 74 (340)
T PF12416_consen 2 IVLSILEGRNFPQRP---RHPIVVEAKF----NGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAV 74 (340)
T ss_pred EEEEEecccCCCCCC---CccEEEEEEe----CCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEe
Confidence 578899999998762 2355677777 34467788889999999999999986432 34467899999988
Q ss_pred c-CCCCCceeEEEEEecCCC
Q psy7848 705 D-YGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 705 d-~~~~ddfLG~v~L~l~s~ 723 (754)
| ..+..+.||.+.|+|.+.
T Consensus 75 ~~~~~~re~iGyv~LdLRsa 94 (340)
T PF12416_consen 75 DGSTGKRESIGYVVLDLRSA 94 (340)
T ss_pred cCCCCcceeccEEEEEcccc
Confidence 8 566788999999999864
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=92.60 E-value=0.74 Score=46.33 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=39.0
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCCCC---ceeEEEEEecCCCC
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSN---DYLGCLELCCNSKG 724 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~~d---dfLG~v~L~l~s~g 724 (754)
.+.|.+..++.+|.|+|+|-+.++.....+..|.|++++...-.+. ..+|-+.|+|-..|
T Consensus 60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~~g 122 (184)
T PF14429_consen 60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMDNG 122 (184)
T ss_dssp -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-TS
T ss_pred EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeeeCC
Confidence 6788999999999999999999987777788999999997643222 68999999987543
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=92.26 E-value=2.2 Score=40.72 Aligned_cols=121 Identities=16% Similarity=0.209 Sum_probs=72.9
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeee----c-cccCcceEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVS----E-TDLSLQSLHI 558 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~----~-~el~~~~L~~ 558 (754)
-.+.|+|.+..+++. ....-||++...... .....|.... ..-.-.|||.|.+..-- . ..+....+.|
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~--~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~ 80 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRGDKS--KGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF 80 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEECCCC--ccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence 357789999998876 223445555443211 1133444332 23447899999874211 1 1256788999
Q ss_pred EEeeCCCCCC-ccceeeeecCcccCCCC--ccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 559 LVLDDDKYGH-DFLGEARFPLNRLRPHI--SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 559 sV~D~d~~g~-dfLGev~I~L~~L~~~~--~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
.|+.....+. ..||.+.|+|+++.... .....+.|... ......|.|++.+.+
T Consensus 81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--------------~~~~a~L~isi~~~~ 136 (143)
T PF10358_consen 81 SVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--------------KKSNATLSISISLSE 136 (143)
T ss_pred EEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--------------CCCCcEEEEEEEEEE
Confidence 9999865555 59999999999987642 33344444321 134456666666543
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >PTZ00303 phosphatidylinositol kinase; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=0.092 Score=61.66 Aligned_cols=63 Identities=22% Similarity=0.556 Sum_probs=44.1
Q ss_pred cccccccccCCCccccccccCCCCcccccccccccccccccccc-----CCCCCCc------eeeccchhhhhhhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS-----ASKKENI------WLCKICAETREMWKK 201 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~-----~~~~~~~------WlC~vC~~~rel~~~ 201 (754)
..|.+|++.|+. +.+ .++.+.+-|..|...||..|...... ..+.... -.|+.|.++-|...+
T Consensus 461 dtC~~C~kkFfS-lsK--~L~~RKHHCRkCGrVFC~~CSSnRs~yp~aKLpKPgsseE~ppRRVCD~CYdq~EnLlQ 534 (1374)
T PTZ00303 461 DSCPSCGRAFIS-LSR--PLGTRAHHCRSCGIRLCVFCITKRAHYSFAKLAKPGSSDEAEERLVCDTCYKEYETVSQ 534 (1374)
T ss_pred CcccCcCCcccc-ccc--ccccccccccCCccccCccccCCcccCcccccCCCCCcccccccchhHHHHHHHHhHHh
Confidence 679999999982 112 25667999999999999999965421 0111212 389999988875443
|
|
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=91.98 E-value=1.1 Score=45.39 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=46.0
Q ss_pred ceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC--CC-ccceeeeecCc
Q psy7848 521 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY--GH-DFLGEARFPLN 579 (754)
Q Consensus 521 ~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~--g~-dfLGev~I~L~ 579 (754)
...++|-|...+.+|.|+|++.+ .|+.+.....-|.|+++|.-.. .. ..+|-+-+||-
T Consensus 52 ~se~~S~V~yH~~~P~W~EtiKi-~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 52 CSEYRSFVLYHNNSPRWNETIKL-PIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred cceEEEEEEEcCCCCCCceeEEE-ecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 35678999999999999999998 5888888899999999884332 22 56777777774
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >PF15627 CEP76-C2: CEP76 C2 domain | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.2 Score=43.80 Aligned_cols=102 Identities=17% Similarity=0.212 Sum_probs=71.7
Q ss_pred cccceeeccccccccccCCC--CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccC----------
Q psy7848 626 KKRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELS---------- 693 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~--~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~---------- 693 (754)
....|.|.|..++-...--. .|..+..+.+++.- +.++++|..+.-+.+|.|+|.|.|++..+...
T Consensus 7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f--~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls 84 (156)
T PF15627_consen 7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHF--RGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS 84 (156)
T ss_pred CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEe--cCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence 34678888888876532211 15567777777743 34699999999999999999999998755311
Q ss_pred -CCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCc
Q psy7848 694 -KQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDH 739 (754)
Q Consensus 694 -~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~ 739 (754)
...|.|.|.--|..+...++|.-.++ |..++..+..
T Consensus 85 ~~~pihivli~~d~~~~~~Lv~s~~ld----------WR~vL~s~~~ 121 (156)
T PF15627_consen 85 ISDPIHIVLIRTDPSGETTLVGSHFLD----------WRKVLCSGNG 121 (156)
T ss_pred CCCceEEEEEEecCCCceEeeeeceeh----------HHHHhccCCC
Confidence 25788888877766656677766555 7777777654
|
|
| >PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A | Back alignment and domain information |
|---|
Probab=91.79 E-value=1.6 Score=43.92 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=37.7
Q ss_pred eEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCCC---C-ccceeeeecCcc
Q psy7848 522 HRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---H-DFLGEARFPLNR 580 (754)
Q Consensus 522 ~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~g---~-dfLGev~I~L~~ 580 (754)
..+.|.+..++.+|.|+|+|.+ .++.......-|.|+++|..... . ..+|-+.+||-+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi-~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKI-QLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEE-EE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEE-EcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 5677888888899999999998 47777777889999999966432 1 589999999987
|
|
| >cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.74 E-value=1 Score=44.97 Aligned_cols=97 Identities=16% Similarity=0.134 Sum_probs=66.8
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeec--C--CCCCeeceeEEEeeeeccccC-cceEE
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCL--R--TINPEFHEKLTFYSVSETDLS-LQSLH 557 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~--~--TlNP~WnE~f~F~~I~~~el~-~~~L~ 557 (754)
+..|.|+|..+.+++........|-||.+.|-.+.. -.....|+... + ...+.|||.+.|. +...++. ...|.
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~-i~i~~LPrearL~ 85 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFP-IPVCQLPRESRLV 85 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECc-cchhcCChhHEEE
Confidence 456889999999998876555678999998754221 11222343221 1 2357799999995 5555554 48899
Q ss_pred EEEeeCCCCC---------C-ccceeeeecCccc
Q psy7848 558 ILVLDDDKYG---------H-DFLGEARFPLNRL 581 (754)
Q Consensus 558 ~sV~D~d~~g---------~-dfLGev~I~L~~L 581 (754)
|+||+....+ . ..||.+.++|-+.
T Consensus 86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred EEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 9999976543 3 7899999998864
|
There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c |
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=91.07 E-value=1.7 Score=44.39 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=45.6
Q ss_pred ceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC----CC-ccceeeeecCc
Q psy7848 521 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----GH-DFLGEARFPLN 579 (754)
Q Consensus 521 ~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~----g~-dfLGev~I~L~ 579 (754)
...++|-|.....+|.|+|++.+ .|+.+.....-|.|+++|.-.. .. ..+|-+.+||-
T Consensus 52 ~se~~S~V~Yh~~~P~W~EtIKl-~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 52 IDEYKSVIYYQVDKPKWFETFKV-AIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred ceeEEEEEEeecCCCCCceeEEE-ecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 45678888888999999999998 5888888899999999985432 11 45777777764
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks) | Back alignment and domain information |
|---|
Probab=91.05 E-value=1.8 Score=43.52 Aligned_cols=79 Identities=14% Similarity=0.041 Sum_probs=51.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEee
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLD 562 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~D 562 (754)
+..++|+|..+.++. .+......-||++.|-.+..-....+|....-+.++.|||.+.|. |...+|. ...|.|.||+
T Consensus 9 ~~~friki~~~~~~~-~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~-I~~~dLP~~arLc~ti~~ 86 (178)
T cd08399 9 DRKFRVKILGIDIPV-LPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFD-IKIKDLPKGALLNLQIYC 86 (178)
T ss_pred CCCEEEEEEeecccC-cCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECc-cccccCChhhEEEEEEEE
Confidence 457888999987443 222223345677665432221223356666666789999999995 7777765 4889999999
Q ss_pred CC
Q psy7848 563 DD 564 (754)
Q Consensus 563 ~d 564 (754)
..
T Consensus 87 ~~ 88 (178)
T cd08399 87 GK 88 (178)
T ss_pred Ee
Confidence 63
|
PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir |
| >PRK12495 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.97 E-value=0.59 Score=47.98 Aligned_cols=62 Identities=23% Similarity=0.372 Sum_probs=36.1
Q ss_pred CHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCccccccccc
Q psy7848 89 DPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGG 168 (754)
Q Consensus 89 t~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~ 168 (754)
-+.|||.+-+-..+|++-|+. +.+|-+.|+ + +......+|.-||.+++ -+ .-..+|..|+..
T Consensus 6 kEaEREkLREKye~d~~~R~~----~~~ma~lL~----~--gatmsa~hC~~CG~PIp-------a~-pG~~~Cp~CQ~~ 67 (226)
T PRK12495 6 KEAEREKLREKYEQDEQKREA----TERMSELLL----Q--GATMTNAHCDECGDPIF-------RH-DGQEFCPTCQQP 67 (226)
T ss_pred HHHHHHHHHHHHhhhHHHHHH----HHHHHHHHH----h--hcccchhhcccccCccc-------CC-CCeeECCCCCCc
Confidence 366788777766666654432 122222221 2 45566799999999998 22 234446666643
|
|
| >cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.1 Score=45.60 Aligned_cols=58 Identities=17% Similarity=0.222 Sum_probs=46.3
Q ss_pred ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC----CCCceeEEEEEecC
Q psy7848 664 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG----KSNDYLGCLELCCN 721 (754)
Q Consensus 664 ~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~----~~ddfLG~v~L~l~ 721 (754)
..++|.|...+.+|.|||++-+.|+.++..+..|.++++..... ..+..+|-..|+|-
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 37889999999999999999999999888899999999875421 12245777777763
|
Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen |
| >cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins | Back alignment and domain information |
|---|
Probab=87.77 E-value=2 Score=43.68 Aligned_cols=57 Identities=14% Similarity=0.186 Sum_probs=46.3
Q ss_pred eeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC-C-CceeEEEEEecC
Q psy7848 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK-S-NDYLGCLELCCN 721 (754)
Q Consensus 665 k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~-~-ddfLG~v~L~l~ 721 (754)
.++|.|..++.+|.|||+|-+.|+.+...+..|.|+++....-. . ...+|-.-|+|-
T Consensus 54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~ 112 (189)
T cd08695 54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM 112 (189)
T ss_pred eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence 78999999999999999999999998888999999888754321 1 246887777764
|
Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int |
| >smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain | Back alignment and domain information |
|---|
Probab=86.41 E-value=3.4 Score=37.40 Aligned_cols=79 Identities=20% Similarity=0.159 Sum_probs=53.1
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEEeeC
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILVLDD 563 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV~D~ 563 (754)
.+.+.+..+.++.........+-||.+.|-.++. -.....|..+.-...+.|||.+.|. |...++. ...|.|+||+.
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~-i~i~~LPr~a~L~~~i~~~ 90 (100)
T smart00142 12 NLVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFP-IQISDLPREARLCITIYEV 90 (100)
T ss_pred ceEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEcc-CchhcCChhhEEEEEEEEe
Confidence 3677888888776654333358899998754221 1123356555545668999999995 7777665 48899999986
Q ss_pred CC
Q psy7848 564 DK 565 (754)
Q Consensus 564 d~ 565 (754)
..
T Consensus 91 ~~ 92 (100)
T smart00142 91 KN 92 (100)
T ss_pred eC
Confidence 43
|
Outlier of C2 family. |
| >PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2 | Back alignment and domain information |
|---|
Probab=85.92 E-value=2.1 Score=41.18 Aligned_cols=73 Identities=21% Similarity=0.162 Sum_probs=49.0
Q ss_pred cEEEEEEeCCCC-Cc-eEEEeeeecCC-CCCeeceeEEEeeeeccccC-cceEEEEEeeCCCCCC-----ccceeeeecC
Q psy7848 508 PFCKLNLVPLTK-TS-HRLRTKTCLRT-INPEFHEKLTFYSVSETDLS-LQSLHILVLDDDKYGH-----DFLGEARFPL 578 (754)
Q Consensus 508 PYVkv~Llp~~~-~~-~~~rTkvi~~T-lNP~WnE~f~F~~I~~~el~-~~~L~~sV~D~d~~g~-----dfLGev~I~L 578 (754)
-||.+.|--++. -. ....|....-+ .++.|||.+.|. |...++. ...|.|+||+.+.... ..||.+.++|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~~~~~~~W~e~l~F~-i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPFSFSRPKWDEWLTFP-IPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EESS-SSEEEEEEEEEE-EEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred EEEEEEEEECCEEeecCeeeccccccccccceEeeEEEee-cChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 466666542221 12 23367666665 799999999995 7777765 4789999999776544 4899999998
Q ss_pred ccc
Q psy7848 579 NRL 581 (754)
Q Consensus 579 ~~L 581 (754)
-+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 865
|
7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A .... |
| >KOG1452|consensus | Back alignment and domain information |
|---|
Probab=85.62 E-value=2.5 Score=45.58 Aligned_cols=82 Identities=22% Similarity=0.169 Sum_probs=55.4
Q ss_pred EEEECcCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcce
Q psy7848 478 VTYDSTTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQS 555 (754)
Q Consensus 478 l~Yd~~~~~L~VtIi~ArnL~~~d~--~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~ 555 (754)
+.....+|.|.|++..+++|..... +-..+-||++... ...+-||.+.....-=.|.|+|+...+ ....
T Consensus 44 l~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~d----rqh~aRt~vrs~~~~f~w~e~F~~Dvv-----~~~v 114 (442)
T KOG1452|consen 44 LRLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPD----RQHPARTRVRSSGPGFAWAEDFKHDVV-----NIEV 114 (442)
T ss_pred eeeecccceEEEEEecccccccChhccCceeeeeeeeeec----ccCccccccccCCCCccchhhceeecc-----ccee
Confidence 3444567999999999999976542 3456889998874 234445555444444568899986322 2467
Q ss_pred EEEEEeeCCCCCC
Q psy7848 556 LHILVLDDDKYGH 568 (754)
Q Consensus 556 L~~sV~D~d~~g~ 568 (754)
|.+-||.|+...+
T Consensus 115 l~~lvySW~pq~R 127 (442)
T KOG1452|consen 115 LHYLVYSWPPQRR 127 (442)
T ss_pred eeEEEeecCchhh
Confidence 8888998887544
|
|
| >PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen [] | Back alignment and domain information |
|---|
Probab=85.44 E-value=7.3 Score=37.06 Aligned_cols=90 Identities=20% Similarity=0.214 Sum_probs=55.7
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeee-ecCCCCCccceeEEEEeec------CccCCCeEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGV-KWKTLNPIFNEEFAIETKI------TELSKQTLVIT 700 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v-~kkTlNP~wNEtF~F~V~~------~dL~~~~L~It 700 (754)
..+.|.|.+..+++. .....||+.... +.......|.. .-.+-.-.|||+|.+.+.. ..+....+.|.
T Consensus 7 f~~~l~i~~l~~~p~----~~~~v~v~wkr~-~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~ 81 (143)
T PF10358_consen 7 FQFDLTIHELENLPS----SNGKVFVKWKRG-DKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS 81 (143)
T ss_pred EEEEEEEEEeECcCC----CCCEEEEEEEEC-CCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence 356788888888876 122334444332 11111233433 2234456899999998543 22566789999
Q ss_pred EEEccCCCCCceeEEEEEecCC
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s 722 (754)
|+....-+....||.+.|+|..
T Consensus 82 v~~~~~~~~k~~lG~~~inLae 103 (143)
T PF10358_consen 82 VFEVDGSGKKKVLGKVSINLAE 103 (143)
T ss_pred EEEecCCCccceEEEEEEEHHH
Confidence 9987533333689999999875
|
Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1). |
| >KOG1729|consensus | Back alignment and domain information |
|---|
Probab=82.93 E-value=1 Score=48.60 Aligned_cols=56 Identities=29% Similarity=0.675 Sum_probs=42.5
Q ss_pred cccccccccc-cCCCccccccccCCCCcccccccccccccccccccc--CCCCCCceeeccchhhhh
Q psy7848 134 AAHACALCGD-KFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS--ASKKENIWLCKICAETRE 197 (754)
Q Consensus 134 ~~~~C~~C~~-~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~--~~~~~~~WlC~vC~~~re 197 (754)
....|..|+. .|+ +..+.+-|..|..-||.-|...... .....+.-.|..|...-+
T Consensus 167 ea~~C~~C~~~~Ft--------l~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 167 EATECMVCGCTEFT--------LSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred cceecccCCCcccc--------HHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 4599999999 555 5666899999999999999987431 222345669999987653
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 754 | ||||
| 2cm6_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin3a | 1e-36 | ||
| 3rpb_A | 140 | The C2b-Domain Of Rabphilin: Structural Variations | 4e-36 | ||
| 2cm5_A | 166 | Crystal Structure Of The C2b Domain Of Rabphilin Le | 4e-35 | ||
| 2r83_A | 284 | Crystal Structure Analysis Of Human Synaptotagmin 1 | 1e-29 | ||
| 1zbd_B | 134 | Structural Basis Of Rab Effector Specificity: Cryst | 7e-24 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 1e-23 | ||
| 2chd_A | 142 | Crystal Structure Of The C2a Domain Of Rabphilin-3a | 5e-09 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 2e-23 | ||
| 2k3h_A | 140 | Structural Determinants For Ca2+ And Pip2 Binding B | 6e-09 | ||
| 3hn8_A | 296 | Crystal Structure Of Synaptotagmin Length = 296 | 2e-22 | ||
| 1dqv_A | 296 | Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt | 2e-22 | ||
| 3n5a_A | 138 | Synaptotagmin-7, C2b-Domain, Calcium Bound Length = | 1e-18 | ||
| 1rsy_A | 152 | Structure Of The First C2-domain Of Synaptotagmin I | 1e-15 | ||
| 3f04_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Len | 2e-15 | ||
| 1byn_A | 128 | Solution Structure Of The Calcium-Bound First C2-Do | 2e-15 | ||
| 3f00_A | 143 | Crystal Structure Of Synaptotagmin I C2a Domain Wit | 2e-15 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 2e-13 | ||
| 2d8k_A | 141 | Solution Structure Of The First C2 Domain Of Synapt | 1e-09 | ||
| 1k5w_A | 152 | Three-Dimensional Structure Of The Synaptotagmin 1 | 2e-13 | ||
| 2lha_A | 151 | Solution Structure Of C2b With Ip6 Length = 151 | 2e-13 | ||
| 1tjm_A | 159 | Crystallographic Identification Of Sr2+ Coordinatio | 2e-13 | ||
| 1rh8_A | 142 | Three-Dimensional Structure Of The Calcium-Free Pic | 8e-13 | ||
| 1dsy_A | 139 | C2 Domain From Protein Kinase C (Alpha) Complexed W | 5e-12 | ||
| 3gpe_A | 137 | Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain | 5e-12 | ||
| 2uzp_A | 144 | Crystal Structure Of The C2 Domain Of Human Protein | 2e-11 | ||
| 4dnl_A | 140 | Crystal Structure Of A C2 Domain Of A Protein Kinas | 6e-11 | ||
| 3pfq_A | 674 | Crystal Structure And Allosteric Activation Of Prot | 7e-11 | ||
| 2dmg_A | 142 | Solution Structure Of The Third C2 Domain Of Kiaa12 | 1e-10 | ||
| 1a25_A | 149 | C2 Domain From Protein Kinase C (Beta) Length = 149 | 1e-10 | ||
| 1ugk_A | 138 | Solution Structure Of The First C2 Domain Of Synapt | 2e-10 | ||
| 1ugk_A | 138 | Solution Structure Of The First C2 Domain Of Synapt | 5e-06 | ||
| 1w15_A | 153 | Rat Synaptotagmin 4 C2b Domain In The Presence Of C | 4e-10 | ||
| 3fdw_A | 148 | Crystal Structure Of A C2 Domain From Human Synapto | 3e-09 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 2e-06 | ||
| 2ep6_A | 133 | Solution Structure Of The Second C2 Domain From Hum | 2e-04 | ||
| 2enp_A | 147 | Solution Structure Of The First C2 Domain From Huma | 4e-06 | ||
| 3m7f_B | 176 | Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX | 2e-04 | ||
| 2nsq_A | 155 | Crystal Structure Of The C2 Domain Of The Human E3 | 4e-04 | ||
| 3b7y_A | 153 | Crystal Structure Of The C2 Domain Of The E3 Ubiqui | 5e-04 | ||
| 2b3r_A | 134 | Crystal Structure Of The C2 Domain Of Class Ii Phos | 7e-04 |
| >pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166 | Back alignment and structure |
|
| >pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140 | Back alignment and structure |
|
| >pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166 | Back alignment and structure |
|
| >pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284 | Back alignment and structure |
|
| >pdb|1ZBD|B Chain B, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 134 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140 | Back alignment and structure |
|
| >pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296 | Back alignment and structure |
|
| >pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296 | Back alignment and structure |
|
| >pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound Length = 138 | Back alignment and structure |
|
| >pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152 | Back alignment and structure |
|
| >pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143 | Back alignment and structure |
|
| >pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128 | Back alignment and structure |
|
| >pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141 | Back alignment and structure |
|
| >pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b- Domain: Synaptotagmin 1 As A Phospholipid Binding Machine Length = 152 | Back alignment and structure |
|
| >pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6 Length = 151 | Back alignment and structure |
|
| >pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site In Synaptotagmin I C2b Domain Length = 159 | Back alignment and structure |
|
| >pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142 | Back alignment and structure |
|
| >pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139 | Back alignment and structure |
|
| >pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137 | Back alignment and structure |
|
| >pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144 | Back alignment and structure |
|
| >pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140 | Back alignment and structure |
|
| >pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674 | Back alignment and structure |
|
| >pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228 Protein Length = 142 | Back alignment and structure |
|
| >pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149 | Back alignment and structure |
|
| >pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138 | Back alignment and structure |
|
| >pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Iv From Human Fetal Brain (Kiaa1342) Length = 138 | Back alignment and structure |
|
| >pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium Length = 153 | Back alignment and structure |
|
| >pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin- Like Protein 4 Length = 148 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133 | Back alignment and structure |
|
| >pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK Protein Length = 147 | Back alignment and structure |
|
| >pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX Length = 176 | Back alignment and structure |
|
| >pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155 | Back alignment and structure |
|
| >pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin- Protein Ligase Nedd4 Length = 153 | Back alignment and structure |
|
| >pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii Phosphatidylinositide 3-Kinase C2 Length = 134 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 260 bits (665), Expect = 3e-81
Identities = 91/283 (32%), Positives = 147/283 (51%), Gaps = 15/283 (5%)
Query: 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 526
LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K + T
Sbjct: 1 GSEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFET 58
Query: 527 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHI 585
K +T+NP F+E+ TF V ++L+ ++L + V D D++ HD +GE + P+N +
Sbjct: 59 KVHRKTLNPVFNEQFTF-KVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117
Query: 586 SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS 645
+ +L + +EE + G I +L + L V +++ NL MD
Sbjct: 118 VTEEWRDL----------QSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDV 167
Query: 646 NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 704
G SDP++K++L + + +K KT +K TLNP +NE F+ E ++ K +V+TV D
Sbjct: 168 GGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY 227
Query: 705 DYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
D ND +G + + NS G LRHW DM+ P H L
Sbjct: 228 DKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTL 270
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284 | Back alignment and structure |
|---|
Score = 99.1 bits (247), Expect = 4e-23
Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Query: 449 TLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDP 508
+ LG I ++ Y T L V + AK L+ MD+ G SDP
Sbjct: 114 DFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDP 173
Query: 509 FCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 567
+ K++L+ K + +T T+NP ++E +F V + + + VLD DK G
Sbjct: 174 YVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGK 232
Query: 568 HDFLGEARFPLN 579
+D +G+ N
Sbjct: 233 NDAIGKVFVGYN 244
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 250 bits (639), Expect = 2e-77
Identities = 81/285 (28%), Positives = 126/285 (44%), Gaps = 15/285 (5%)
Query: 466 QADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLR 525
+A G I + Y + L V + +A L A D +G SDP+ K+ L+P K + +
Sbjct: 1 EAGAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQ 58
Query: 526 TKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 584
TK +T+NP F+E F SV +L+ + LH V D D++ HD +G+
Sbjct: 59 TKVHRKTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNL----L 113
Query: 585 ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD 644
+ + + G E G++ +LC+ L V +IK +NL MD
Sbjct: 114 ELAEQPPDRPLWRDIL-----EGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMD 168
Query: 645 SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703
GFSDP++K L + + +K KT +K TLNP +NE + + L I V D
Sbjct: 169 LTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD 228
Query: 704 KDYGKSNDYLGCLELCCNSKGDR-LRHWVDMMKYPDHKHEGIHNL 747
D N+ +G + + HW +M+ P E H L
Sbjct: 229 YDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQL 273
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 6e-33
Identities = 45/141 (31%), Positives = 72/141 (51%), Gaps = 6/141 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 7 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 65
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMM 734
LNPIFNE F + EL+++ L +V+D D +D +G + L + +
Sbjct: 66 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 125
Query: 735 KY-----PDHKHEGIHNLSIK 750
+ + G N S+
Sbjct: 126 RDILEGGSEKADLGELNFSLC 146
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 1e-23
Identities = 37/131 (28%), Positives = 61/131 (46%), Gaps = 2/131 (1%)
Query: 455 ITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNL 514
++ +LG + ++ Y T L VT+ +A L+AMD+ G SDP+ K +L
Sbjct: 122 RPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASL 181
Query: 515 VPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGE 573
+ + + +T T+NP ++E L F V+ + L I V+D D GH + +G
Sbjct: 182 ISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGV 240
Query: 574 ARFPLNRLRPH 584
R PH
Sbjct: 241 CRVGPEAADPH 251
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 1e-47
Identities = 73/148 (49%), Positives = 106/148 (71%), Gaps = 1/148 (0%)
Query: 601 REEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD 660
EE+V + + GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD
Sbjct: 10 EEEQVERIGDIEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD 69
Query: 661 LHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC 719
+ K K+KT +K KTLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L
Sbjct: 70 MGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLG 129
Query: 720 CNSKGDRLRHWVDMMKYPDHKHEGIHNL 747
++KG+RL+HW + +K D K E H L
Sbjct: 130 ISAKGERLKHWYECLKNKDKKIERWHQL 157
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 3e-27
Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G I +++ Y + L V + R L AMD +G SDPF KL L P + +T+
Sbjct: 23 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKK 82
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 579
+T+NPEF+E+ + + +DL+ +SL I V D D +D++G + ++
Sbjct: 83 KTLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS 131
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 162 bits (411), Expect = 6e-47
Identities = 52/134 (38%), Positives = 76/134 (56%), Gaps = 1/134 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G++ L+LC++ ++IVN+IK NL MD G SDP++K++L + K KT K +
Sbjct: 3 GELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKR 62
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
LNPIFNE FA + +L + T++ITV DKD ND +G + L S ++HW DM
Sbjct: 63 NLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDM 122
Query: 734 MKYPDHKHEGIHNL 747
+ P H L
Sbjct: 123 IARPRQPVAQWHQL 136
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138 | Back alignment and structure |
|---|
Score = 108 bits (273), Expect = 4e-28
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
+ G + L++ Y+ + S+ V + +A+ L+AMDI GTSDP+ K+ L+ K + +T T
Sbjct: 1 SRGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTK 60
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 579
R +NP F+E F + L ++ I V+D DK D +G+
Sbjct: 61 KRNLNPIFNESFAF-DIPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWK 110
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 162 bits (412), Expect = 8e-47
Identities = 39/137 (28%), Positives = 67/137 (48%), Gaps = 1/137 (0%)
Query: 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVK 671
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVK 74
Query: 672 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWV 731
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW
Sbjct: 75 KCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWK 134
Query: 732 DMMKYPDHKHEGIHNLS 748
++ +P + H L
Sbjct: 135 EICDFPRRQIAKWHMLC 151
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 6e-27
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G + +++ Y STT +L V + +A+ L D+ G SDP+ K+NL K + +T
Sbjct: 16 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKK 75
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLN 579
T N F+E F + L S+ LVLD ++ + +G
Sbjct: 76 CTPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT 124
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-45
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G I +L + L V +++ NL MD G SDP++K++L + + +K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 734 MKYPDHKHEGIHNL 747
+ P H L
Sbjct: 132 LANPRRPIAQWHTL 145
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-26
Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 2/110 (1%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKK 70
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLN 579
T+NP ++E +F V + + + VLD DK G +D +G+ N
Sbjct: 71 NTLNPYYNESFSF-EVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYN 119
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 6e-41
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 3/137 (2%)
Query: 599 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 658
+ + + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 5 IGGGGGGILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 64
Query: 659 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 716
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 65 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 123
Query: 717 ELCCNSKGDRLRHWVDM 733
+ G W D+
Sbjct: 124 PMNTVDFGHVTEEWRDL 140
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 3e-31
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 4/120 (3%)
Query: 463 VTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSH 522
+ LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P
Sbjct: 12 ILDSMVEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLP--DKKK 69
Query: 523 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+ TK +T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 70 KFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 144 bits (366), Expect = 2e-40
Identities = 44/138 (31%), Positives = 74/138 (53%), Gaps = 3/138 (2%)
Query: 599 VPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLK 658
+ E +E + GK+ +L + + L+V +I+ L +D G SDP++K++L
Sbjct: 13 LDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLL 72
Query: 659 PDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CL 716
PD K+K++T V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G +
Sbjct: 73 PD-KKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKV 131
Query: 717 ELCCNSKGDRLRHWVDMM 734
+ G W D+
Sbjct: 132 PMNTVDFGHVTEEWRDLQ 149
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 3e-31
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 4/136 (2%)
Query: 447 SGTLKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTS 506
+ G I + + + LG ++ ++ YD L V + +A L A+D+ GTS
Sbjct: 4 GISGGGGGILDSMVEKEEPKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTS 63
Query: 507 DPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566
DP+ K+ L+P + TK +T+NP F+E+ TF V ++L ++L + V D D++
Sbjct: 64 DPYVKVFLLP--DKKKKFETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRF 120
Query: 567 G-HDFLGEARFPLNRL 581
HD +GE + P+N +
Sbjct: 121 SKHDIIGEFKVPMNTV 136
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 140 bits (356), Expect = 3e-39
Identities = 51/132 (38%), Positives = 86/132 (65%), Gaps = 1/132 (0%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S T LG++E ++ YD +L T+ RAKGL+ MD +G +DP+ KL+L+P S++L
Sbjct: 9 SDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKL 68
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 583
RTKT T NP ++E L ++ ++E D+ ++L I V D+DK+G ++F+GE RF L +L+
Sbjct: 69 RTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128
Query: 584 HISRDLCLNLCK 595
+ ++ + L +
Sbjct: 129 NQRKNFNICLER 140
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 1e-34
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Query: 602 EEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL 661
E + ++ G + +L + L +I+ L PMDSNG +DP++KL+L P
Sbjct: 3 EANSYDSDQATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGA 62
Query: 662 HK-RKYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELC 719
K K +T T NP++NE ++ ++TL I+V D+D N+++G
Sbjct: 63 SKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFS 122
Query: 720 CNSKGDRLRHWVDM 733
R ++
Sbjct: 123 LKKLKANQRKNFNI 136
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 9e-38
Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 672
G+I +L + + ++L+V++ +C L D + S+P++K YL PD ++ K KT +K
Sbjct: 10 GRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKR 69
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 730
T+NP+++E E + L+++TL +VW N +LG E+ +S +L H
Sbjct: 70 DTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHC 129
Query: 731 VDMMKYPDHKHEGIH 745
+ + + EG H
Sbjct: 130 LPLHGKISAESEGHH 144
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 4e-31
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 8/146 (5%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G I ++ Y+ T SL V + L D S+P+ K L+P + +T
Sbjct: 9 TGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIK 68
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 588
T+NP + E L + + E+ L+ ++L V ++G + FLGEA ++ + D
Sbjct: 69 RDTVNPLYDETLRY-EIPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLD 127
Query: 589 LCLNLCKHYPVPREEEVWGEEECWQH 614
CL L E G H
Sbjct: 128 HCLPLHGKISAESE----GHHH-HHH 148
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 1e-37
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 5/132 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 673
G+I++ + LIV + NL+PMD NG SDP++KL L PD K KT
Sbjct: 20 GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 77
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 732
+LNP +NE F + K ++ + L + +WD D ND++G L + + + W
Sbjct: 78 SLNPEWNETFRFQLKESDKDR-RLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 136
Query: 733 MMKYPDHKHEGI 744
++ + ++ +
Sbjct: 137 LLSQEEGEYFNV 148
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-29
Identities = 37/115 (32%), Positives = 59/115 (51%), Gaps = 5/115 (4%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G I + D L V + AK L MD +G SDP+ KL L+P K+ + +TKT
Sbjct: 18 RRGRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTI 75
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 583
++NPE++E F + E+D + L + + D D +DF+G F ++ L+
Sbjct: 76 KCSLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 128
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 1e-36
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 6/129 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVKWK 673
G +F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V K
Sbjct: 9 GTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRK 67
Query: 674 TLNPIFNEEFAIETK-ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRH 729
TL+P F+E F T++ + L T+ D +D +G + + + ++
Sbjct: 68 TLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLM 127
Query: 730 WVDMMKYPD 738
+++ P
Sbjct: 128 NREIISGPS 136
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-33
Identities = 36/119 (30%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHR 523
S + LG++ ++ Y+ + V + A+GL AMD TSDP+ K+ ++P + H+
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP--EKKHK 59
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
++T+ +T++P F E TFY + T + +LH +L D++ D +GE PL+ +
Sbjct: 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-36
Identities = 40/131 (30%), Positives = 65/131 (49%), Gaps = 6/131 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWK 673
G+I LT+ S+++ LIV + C NLI +G SDP++++YL PD + + KT V K
Sbjct: 11 GQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKK 69
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKD--YGKSNDYLGC--LELCCNSKGDRLRH 729
TLNP+F++ F + E+ ++TL + V + K LG + L
Sbjct: 70 TLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQ 129
Query: 730 WVDMMKYPDHK 740
W D+ +
Sbjct: 130 WYDLTEDSGPS 140
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 8e-29
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
+ + LG I+LT+ + S L V +H + L A G SDP+ ++ L+P + S R
Sbjct: 4 GSSGSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRR 62
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 581
+T +T+NP F + F SVS ++ ++L + V + + LG+ L
Sbjct: 63 KTHVSKKTLNPVFDQSFDF-SVSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-35
Identities = 33/134 (24%), Positives = 60/134 (44%), Gaps = 5/134 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK 673
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 8 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 67
Query: 674 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELCCNS-KGDRLRH 729
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 68 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 127
Query: 730 WVDMMKYPDHKHEG 743
W + + G
Sbjct: 128 WYKLQTHDSGPSSG 141
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 7e-34
Identities = 26/118 (22%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 526
+ ++ G + + + +D L VT+ AK L + + +P+ K+ +P ++ RT
Sbjct: 3 SGSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRT 62
Query: 527 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 581
KT +T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 63 KTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-35
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 15/129 (11%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD----------LHKR 664
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 665 KYKTGVKWKTLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 721
K +T K+LNP +N+ ++ + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 722 SKGDRLRHW 730
S D W
Sbjct: 125 SHLDNTPRW 133
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142 | Back alignment and structure |
|---|
Score = 115 bits (289), Expect = 3e-30
Identities = 36/122 (29%), Positives = 63/122 (51%), Gaps = 12/122 (9%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP---------LTKTSH 522
G I+L + YD L + + +A+ L D +G SDPF K+ L+P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 523 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+ RTK +++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 582 RP 583
Sbjct: 125 SH 126
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-35
Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
G+I ++ ++ ++ L V ++K L D +G SDPF+K+YL PD K K +T VK K
Sbjct: 13 GRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPD-KKHKLETKVKRKN 71
Query: 675 LNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWV 731
LNP +NE F E ++ ++ L + V D D ND +G + L W
Sbjct: 72 LNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWK 131
Query: 732 DM 733
D+
Sbjct: 132 DL 133
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 3e-34
Identities = 43/136 (31%), Positives = 71/136 (52%), Gaps = 3/136 (2%)
Query: 464 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHR 523
+S + NLG I+ +V Y+ +L V + +A+ L A D GTSDPF K+ L+P H+
Sbjct: 5 SSGSRENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLP--DKKHK 62
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 582
L TK + +NP ++E F + + L++ VLD D++ +D +GE PLN++
Sbjct: 63 LETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD 122
Query: 583 PHISRDLCLNLCKHYP 598
+ +L P
Sbjct: 123 LTQMQTFWKDLKPSGP 138
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 129 bits (325), Expect = 4e-35
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 5/121 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
K+ L + +K L V ++ + +G D +++ + + +T +K +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVT---SNHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 732
L+ + E + EL TL +T+ D + G L L S W +
Sbjct: 70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 733 M 733
+
Sbjct: 130 L 130
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 5e-29
Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 6/118 (5%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S + + + YD L VT A + G D + + ++ T +
Sbjct: 6 SGSWNQAPKLHYCLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEA- 61
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+T R ++ + E L ++E +L +L + + D++ H GE R L+
Sbjct: 62 QTALKKRQLHTTWEEGLVL-PLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGT 118
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 127 bits (322), Expect = 2e-34
Identities = 25/133 (18%), Positives = 52/133 (39%), Gaps = 5/133 (3%)
Query: 607 GEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-- 664
E E +I + L + K + + +I+ +NL + I++ + P
Sbjct: 22 DESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTC 81
Query: 665 KYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELC---CN 721
++T + +FNE F + L ++TL + V D + LG ++
Sbjct: 82 LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141
Query: 722 SKGDRLRHWVDMM 734
G+R W +++
Sbjct: 142 RSGERSTRWYNLL 154
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 123 bits (311), Expect = 6e-33
Identities = 23/134 (17%), Positives = 50/134 (37%), Gaps = 3/134 (2%)
Query: 450 LKRGVITEEKEYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPF 509
++R +E + I++ + YD + + + L A+
Sbjct: 8 VQRLGASEAAAFDSDESEAVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVN 67
Query: 510 CKLNLVPL-TKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG- 567
++ ++P T+ RT+ + F+E S+S L ++L + V D+
Sbjct: 68 IRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWV-SMSYPALHQKTLRVDVCTTDRSHL 126
Query: 568 HDFLGEARFPLNRL 581
+ LG A+ L +
Sbjct: 127 EECLGGAQISLAEV 140
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 4e-34
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G + + + +D L VT+ AK L + + +P+ K+ +P ++ RTKT +
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGH---DFLGEARFPLNRL 581
T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 1e-33
Identities = 32/124 (25%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 673
G++ + L F LIV ++ +L + +P++K+Y PD K K +T K
Sbjct: 5 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 64
Query: 674 TLNPIFNEEFAIET-KITELSKQTLVITVWDKD--YGKSNDYLGCLELC-CNSKGDRLRH 729
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 65 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 124
Query: 730 WVDM 733
W +
Sbjct: 125 WYKL 128
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 123 bits (310), Expect = 5e-33
Identities = 34/128 (26%), Positives = 55/128 (42%), Gaps = 10/128 (7%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPM-------DSNGFSDPFIKLYLKPDLHKRKYK 667
G + + + L V +I+ +L P S+P++K+ L PD K +
Sbjct: 13 GMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPD-QKNSKQ 71
Query: 668 TGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGD 725
TGVK KT P+F E + E E ++TL++TV D D + +G + LC
Sbjct: 72 TGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVK 131
Query: 726 RLRHWVDM 733
W +
Sbjct: 132 GGHWWKAL 139
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 2e-28
Identities = 30/126 (23%), Positives = 54/126 (42%), Gaps = 11/126 (8%)
Query: 464 TSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM-------DIHGTSDPFCKLNLVP 516
+S + LG + + YD L V + A+ L S+P+ K+ L+P
Sbjct: 5 SSGSKYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLP 64
Query: 517 LTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEAR 575
+ +T +T P F E+ TF + + ++L + V+D DK+ H +G+
Sbjct: 65 --DQKNSKQTGVKRKTQKPVFEERYTF-EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVS 121
Query: 576 FPLNRL 581
PL +
Sbjct: 122 VPLCEV 127
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 120 bits (302), Expect = 9e-32
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVK 671
G L L + R L++++I+ LI G DP++K+ L P+ + KT
Sbjct: 12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTV 70
Query: 672 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKD-YGKSNDYLGCLELCCNSKGDRLRHW 730
+P F+E F + + K L++TVW++ + + +GC+ ++
Sbjct: 71 PDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSRQSGLIGCMSF-------GVKSL 122
Query: 731 VDMMKYPDHKHEGIHNL 747
+ PD + G + L
Sbjct: 123 LT----PDKEISGWYYL 135
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 4e-27
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 5/117 (4%)
Query: 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT 526
+ G+ +L ++ D+ L + + KGL + GT DP+ K++L+P +T
Sbjct: 9 SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKT 67
Query: 527 KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRL 581
+T +P FHE F V E D + L + V + +G F + L
Sbjct: 68 QTVPDCRDPAFHEHFFF-PVQEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSL 122
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 4e-30
Identities = 34/163 (20%), Positives = 67/163 (41%), Gaps = 11/163 (6%)
Query: 480 YDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP-LTKTSHRLRTKTCLRTINPEFH 538
++ T + V + GL DI G SDP+ ++ L ++ ++TKT +++NP+++
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHY 597
E++ F + + + V D+++ DFLG+ PL L R K +
Sbjct: 63 EEILFRVLPQR----HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDF 118
Query: 598 PVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNL 640
+ G + L + + K + N + L
Sbjct: 119 VLHPRSHKSRV-----KGYLRLKMTYLPKNGSEDENADQAEEL 156
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176 | Back alignment and structure |
|---|
Score = 102 bits (255), Expect = 3e-25
Identities = 26/121 (21%), Positives = 51/121 (42%), Gaps = 11/121 (9%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIET 687
+ V +I L D G SDP++++ L + +T K+LNP +NEE
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 688 KITELSKQTLVITVWDKDYGKSNDYLGCLEL------CCNSKGDRLRHWVDMMKYPDHKH 741
++ V+D++ +D+LG +++ N + +R + D + +P
Sbjct: 70 LPQR---HRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHK 126
Query: 742 E 742
Sbjct: 127 S 127
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 1e-29
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 7/123 (5%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G + L++ + + L + ++ +L+ D +P++K YL PD HK K KT + K
Sbjct: 9 GAVKLSVSY--RNGTLFIMVMHIKDLVTEDGAD-PNPYVKTYLLPDTHKTSKRKTKISRK 65
Query: 674 TLNPIFNEEFAIET-KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHW 730
T NP FNE L ++ L ++V + + N +LG + L W
Sbjct: 66 TRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKW 125
Query: 731 VDM 733
+
Sbjct: 126 YQL 128
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134 | Back alignment and structure |
|---|
Score = 112 bits (283), Expect = 2e-29
Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
G+++L+V+Y + T L + + K L D +P+ K L+P T + + +TK
Sbjct: 7 GSGAVKLSVSYRNGT--LFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKIS 63
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+T NP F+E L + S+ L + L + VL + + FLG PL
Sbjct: 64 RKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDF 116
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-29
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 471 LGSIELTVTYDS-TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKT 528
+ D + + V + GL DI G SDP+ ++ L ++TKT
Sbjct: 5 CAVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKT 64
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISR 587
+++NP+++E++ F + L V D+++ DFLG+ PL L R
Sbjct: 65 IKKSLNPKWNEEILFRVHPQQ----HRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPR 120
Query: 588 DLCLNLCKHYPV-PREEEVWGEEECWQHGKIFLTLCF 623
K + + PR + G + L + +
Sbjct: 121 LERPYTFKDFVLHPRSHKSRV------KGYLRLKMTY 151
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 4e-28
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 615 GKIFLTLCFSTKK-RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVK 671
L + R + V +I L D G SDP++++ L ++ +T
Sbjct: 6 AVEVFGLLEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTI 65
Query: 672 WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
K+LNP +NEE + L+ V+D++ +D+LG +++
Sbjct: 66 KKSLNPKWNEEILFRVHPQQ---HRLLFEVFDENRLTRDDFLGQVDV 109
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 1e-26
Identities = 27/121 (22%), Positives = 48/121 (39%), Gaps = 10/121 (8%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKR-KYKTGVKW 672
G I + + KK L V +I+ +L S P++K+YL + K KT +
Sbjct: 19 GDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIAR 76
Query: 673 KTLNPIFNEEFAIETKITELSKQTLVITVW-DKDYGKSNDYLGCLE--LCCNSKGDRLRH 729
KTL+P++ + + + L + VW D ++G + L +
Sbjct: 77 KTLDPLYQQSLVFD---ESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIG 133
Query: 730 W 730
W
Sbjct: 134 W 134
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 1e-22
Identities = 25/122 (20%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHR 523
+ A +G I++ + L V + RA+ L T P+ K+ L+ +
Sbjct: 12 TLATPAMGDIQIGMEDK--KGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAK 69
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD-DKYG-HDFLGEARFPLNRL 581
+T+ +T++P + + L F + + L ++V D + F+G A+ L L
Sbjct: 70 KKTRIARKTLDPLYQQSLVF----DESPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125
Query: 582 RP 583
Sbjct: 126 DL 127
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 6e-25
Identities = 32/111 (28%), Positives = 51/111 (45%), Gaps = 7/111 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V ++K +L+ D +G SDPF L L D + +T +K LNP +N+ F K
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGND----RLQTHTVYKNLNPEWNKVFTFPIKD 70
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740
L +TV+D+D K D+LG + + S D + + +
Sbjct: 71 IH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQ 118
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 1e-23
Identities = 35/116 (30%), Positives = 50/116 (43%), Gaps = 10/116 (8%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +A L A D G SDPFC L L RL+T T + +NPE+++ TF +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTF-PI 68
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 601
+ L + V D+D DFLG+ PL +R L +
Sbjct: 69 KDIH---DVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFK 121
|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 Length = 134 | Back alignment and structure |
|---|
Score = 98.9 bits (245), Expect = 1e-24
Identities = 56/123 (45%), Positives = 79/123 (64%), Gaps = 10/123 (8%)
Query: 86 EPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKF 145
E L E+E I VI RAE ++ +EQER+GRLV+R++ M++NV + C LCG++
Sbjct: 8 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVA--GDGVNRCILCGEQL 65
Query: 146 SPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAW 205
G+ G+ +VC DC+ VC KCG+E S ++ +WLCKIC E RE+WK+S AW
Sbjct: 66 -------GMLGSASVVCEDCKKNVCTKCGVE-TSNNRPHPVWLCKICLEQREVWKRSGAW 117
Query: 206 FFK 208
FFK
Sbjct: 118 FFK 120
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 96.3 bits (240), Expect = 9e-24
Identities = 23/114 (20%), Positives = 45/114 (39%), Gaps = 8/114 (7%)
Query: 483 TTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHE 539
++ V + RA + D+ T DP+ +L + R RT+ INP ++E
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNE 58
Query: 540 KLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 593
F L I ++D + + LG A F ++ ++ +++
Sbjct: 59 TFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 2e-23
Identities = 20/108 (18%), Positives = 43/108 (39%), Gaps = 9/108 (8%)
Query: 630 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 686
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEF- 62
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 732
+ + L IT+ D +Y ++ LG + G++
Sbjct: 63 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFI 108
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 3e-23
Identities = 25/116 (21%), Positives = 44/116 (37%), Gaps = 8/116 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V + +N+ P G DP + + K + K KT LNP++NE + +
Sbjct: 9 LRVIVESASNI-PKTKFGKPDPIVSVIFKDE----KKKTKKVDNELNPVWNEILEFDLRG 63
Query: 690 TEL-SKQTLVITVWDKDYGKSNDYLGC--LELCCNSKGDRLRHWVDMMKYPDHKHE 742
L +L I V D + N +G + L + ++ + K +
Sbjct: 64 IPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQ 119
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140 | Back alignment and structure |
|---|
Score = 92.1 bits (229), Expect = 4e-22
Identities = 28/115 (24%), Positives = 41/115 (35%), Gaps = 7/115 (6%)
Query: 482 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 541
++ L V + A + G DP + K +TK +NP ++E L
Sbjct: 4 GSSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKK-----KTKKVDNELNPVWNEIL 57
Query: 542 TFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCK 595
F SL I+V D + G + +G A L L SR L L
Sbjct: 58 EFDLRGIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS 112
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 92.0 bits (229), Expect = 3e-22
Identities = 20/121 (16%), Positives = 43/121 (35%), Gaps = 9/121 (7%)
Query: 625 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 684
++ + + ++ NL D DPF K+ + + + T TL+P +N+ +
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYD 59
Query: 685 IETKITELSKQTLVITVWDKDYGKSND---YLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741
+ ++ I+VW+ +LGC+ L N+ +
Sbjct: 60 LYVG----KTDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNP 115
Query: 742 E 742
Sbjct: 116 S 116
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-21
Identities = 32/145 (22%), Positives = 53/145 (36%), Gaps = 22/145 (15%)
Query: 482 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 541
S + +T+ AK L D DPF K+ + + T T T++P++++
Sbjct: 2 SEFIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH---STDTVKNTLDPKWNQHY 58
Query: 542 TFYSVSETDLSLQSLHILVLDDDKYGHD----FLGEARFPLNRLRPH-ISRDLCLNLCKH 596
Y S+ I V + K FLG R N + + L+LCK
Sbjct: 59 DLYVGKT-----DSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKL 113
Query: 597 YPVPREEEVWGEEECWQHGKIFLTL 621
P + G+I ++L
Sbjct: 114 NP---------SDTDAVRGQIVVSL 129
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-21
Identities = 36/139 (25%), Positives = 52/139 (37%), Gaps = 24/139 (17%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYS 545
L V L AKGL D DP+ +L + ++ PE++E F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQ-----KSNVAEGMGTTPEWNETFIF-T 65
Query: 546 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEE 604
VSE L + D D D +GEA PL + S Y V ++EE
Sbjct: 66 VSEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTA-----YNVVKDEE 117
Query: 605 VWGEEECWQHGKIFLTLCF 623
G+I++ L F
Sbjct: 118 Y--------KGEIWVALSF 128
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 2e-20
Identities = 20/89 (22%), Positives = 37/89 (41%), Gaps = 6/89 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V L+ L D DP+++L + + + P +NE F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQ---DQKSNVAEGMGTTPEWNETFIF--TV 66
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLEL 718
+E + + L ++DKD G +D +G +
Sbjct: 67 SEGTTE-LKAKIFDKDVGTEDDAVGEATI 94
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-20
Identities = 24/112 (21%), Positives = 44/112 (39%), Gaps = 18/112 (16%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
+ + ++ L D G SDP++ + + K K +T + LNP++ E F E
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVG----KTKKRTKTIYGNLNPVWEENFHFECH- 73
Query: 690 TELSKQTLVITVWDKDYGK-----------SNDYLGCLELCCNSKGDRLRHW 730
S + + V D+D S+D+LG + + + W
Sbjct: 74 --NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVW 123
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 3e-19
Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 44/157 (28%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
+ +T+ A+GL+A D G+SDP+ + + + RTKT +NP + E F
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGK-----TKKRTKTIYGNLNPVWEENFHFECH 73
Query: 547 SETDLSLQSLHILVLDDDKYG------------HDFLGEARFPLNRLRPHISRDLCLNLC 594
+ +D + + VLD+D DFLG+ + L
Sbjct: 74 NSSD----RIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL------------- 116
Query: 595 KHYPVPREEEVW-----GEEECWQHGKIFLTLCFSTK 626
E +VW ++ G I L + K
Sbjct: 117 -----SGEMDVWYNLDKRTDKSAVSGAIRLHISVEIK 148
|
| >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} Length = 153 | Back alignment and structure |
|---|
Score = 84.3 bits (207), Expect = 3e-19
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 15/125 (12%)
Query: 88 LDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNV----TGGAAAAHACALCGD 143
L E E + V++R L E+ER+ L ++ CA C
Sbjct: 17 LTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQ 76
Query: 144 KFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSN 203
+ + + C +C VC+ C A +E WLC C R + S
Sbjct: 77 PYRLLLNS-------RRQCLECSLFVCKSCS----HAHPEEQGWLCDPCHLARVVKIGSL 125
Query: 204 AWFFK 208
W+++
Sbjct: 126 EWYYQ 130
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 82.2 bits (203), Expect = 2e-18
Identities = 15/108 (13%), Positives = 32/108 (29%), Gaps = 8/108 (7%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L + +I + P++++ + + KT T +P + + +
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVD----GQSKKTEKCNNTNSPKWKQPLTVIVT- 92
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYP 737
L VW KS+ LG L ++ +
Sbjct: 93 ---PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173 | Back alignment and structure |
|---|
Score = 79.9 bits (197), Expect = 2e-17
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 15/126 (11%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L +T+ AK P+ ++ + +K +T+ C T +P++ + LT V
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-----KTEKCNNTNSPKWKQPLTV-IV 91
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL---RPHISRDLCLNLCKHYPVPRE 602
+ LH V LG A + ++ + L
Sbjct: 92 TPVS----KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGD-KEP 146
Query: 603 EEVWGE 608
E G+
Sbjct: 147 TETIGD 152
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 85.4 bits (210), Expect = 3e-17
Identities = 30/179 (16%), Positives = 60/179 (33%), Gaps = 11/179 (6%)
Query: 482 STTCSLHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFH 538
+ V + RA + D+ T DP+ +L + T R RT+ INP ++
Sbjct: 15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFIS--TTPDSRKRTRHFNNDINPVWN 72
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYP 598
E F L I ++D + + LG A F ++ ++ +++ +
Sbjct: 73 ETFEF---ILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTE 129
Query: 599 VPREEEVWGEEECWQHGKIFLTLC---FSTKKRALIVNLIKCTNLIPMDSNGFSDPFIK 654
+ E + + L F +++ I +K S +
Sbjct: 130 MVLEMSLEVCSCPDLRFSMALCDQEKTFRQQRKEHIRESMKKLLGPKNSEGLHSARDVP 188
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749 | Back alignment and structure |
|---|
Score = 78.4 bits (192), Expect = 4e-15
Identities = 21/120 (17%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Query: 630 LIVNLIKCTNLI---PMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 686
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFI-STTPDSRKRTRHFNNDINPVWNETFEF- 77
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHN 746
+ + L IT+ D +Y ++ LG +S + V + + +
Sbjct: 78 -ILDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMS 135
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 6e-17
Identities = 25/152 (16%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 484 TCSLHVTLHRAKGLRAMDI----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI 533
L V + A GL+ H DP+ +++ +T T +T
Sbjct: 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV----DQVRVGQTSTKQKTN 83
Query: 534 NPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLN 592
P ++E+ +V++ L + V + G F+
Sbjct: 84 KPTYNEEFCA-NVTDG----GHLELAVFHETPLGYDHFVANCTLQFQ------------E 126
Query: 593 LCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624
L + E W + E GK+F+ + +
Sbjct: 127 LLRTTGASDTFEGWVDLE--PEGKVFVVITLT 156
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157 | Back alignment and structure |
|---|
Score = 75.4 bits (185), Expect = 4e-16
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 17/99 (17%)
Query: 630 LIVNLIKCTNLIPMD----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIF 679
L V + + L P + DP++ + + R +T K KT P +
Sbjct: 31 LRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD---QVRVGQTSTKQKTNKPTY 87
Query: 680 NEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
NEEF L + V+ + + ++ L
Sbjct: 88 NEEFCANVT----DGGHLELAVFHETPLGYDHFVANCTL 122
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 5e-16
Identities = 28/151 (18%), Positives = 49/151 (32%), Gaps = 37/151 (24%)
Query: 486 SLHVTLHRAKGLRAMDI-----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN 534
L + + A L+ DP+ LN+ S +T T +T +
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV----DDSRIGQTATKQKTNS 62
Query: 535 PEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNL 593
P +H++ V + + + V D G DF+ L + SR
Sbjct: 63 PAWHDEFVT-DVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHF---- 113
Query: 594 CKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624
E W + E GK+++ + S
Sbjct: 114 ----------EDWIDLE--PEGKVYVIIDLS 132
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 2e-15
Identities = 19/118 (16%), Positives = 41/118 (34%), Gaps = 22/118 (18%)
Query: 630 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 678
L + + + +L P DP+I L + R +T K KT +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPA 64
Query: 679 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS----KGDRLRHWVD 732
+++EF + + + + + V+ +D++ + W+D
Sbjct: 65 WHDEFVTDVC----NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWID 118
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 66.1 bits (160), Expect = 2e-11
Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 35/178 (19%)
Query: 550 DLSLQSLHILVLDDDK-------------YGHDFLGEARFPLNRLRPHISRDLCLNLCKH 596
D SL+ LH L+ + + P + S D C C+
Sbjct: 319 DYSLEPLHTLLEEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQHKSSHDSCQCECQD 378
Query: 597 YPVPREEEVWGEEECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLY 656
V + + +V+ + +L + Y
Sbjct: 379 SKVTNQ---DCCPRQRGLAHL-------------VVSNFRAEHLWGDYT-----TATDAY 417
Query: 657 LKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG 714
LK ++++TGV W NP + ++ E + + L + VWD DYG +D LG
Sbjct: 418 LKVFFGGQEFRTGVVWNNNNPRWTDKMDFEN-VLLSTGGPLRVQVWDADYGWDDDLLG 474
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 1e-07
Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 9/95 (9%)
Query: 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFY 544
L V+ RA+ L +D + K+ RT NP + +K+ F
Sbjct: 394 AHLVVSNFRAEHLWGDYTT-ATDAYLKVFF-----GGQEFRTGVVWNNNNPRWTDKMDFE 447
Query: 545 SVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPL 578
+V + L + V D D D LG
Sbjct: 448 NVLLST--GGPLRVQVWDADYGWDDDLLGSCDRSP 480
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 4e-08
Identities = 17/100 (17%), Positives = 32/100 (32%), Gaps = 13/100 (13%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +AK A + + + L + + + T +R P + + F
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKV-----QNVKSTTIA-VRGSQPSWEQDFMF--- 54
Query: 547 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHIS 586
L L + V + +G PL +R
Sbjct: 55 EINRLD-LGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNE 93
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 5e-08
Identities = 16/89 (17%), Positives = 33/89 (37%), Gaps = 12/89 (13%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V + K + + ++ L ++ K T + P + ++F E I
Sbjct: 7 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVKSTTIAV-RGSQPSWEQDFMFE--I 56
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLEL 718
L L + VW+K + +G + +
Sbjct: 57 NRLDLG-LTVEVWNKGLIW-DTMVGTVWI 83
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 2e-07
Identities = 49/387 (12%), Positives = 100/387 (25%), Gaps = 128/387 (33%)
Query: 460 EYFVTSQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK 519
+ FV N + + + S+ ++ + R ++ + F K N V +
Sbjct: 80 QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR---LYNDNQVFAKYN-VSRLQ 135
Query: 520 TSHRLRT--------------------KTCL-------RTINPEFHEK---LTFYSVSET 549
+LR KT + + + K L + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 550 DL---SLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYP----VPRE 602
+ LQ L + + D + ++ ++ + R L K Y V
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS---KPYENCLLVLL- 251
Query: 603 EEVWGEEECWQ----HGKIFLT---------LCFSTKKRALIVN-------------LIK 636
V + W KI LT L +T + + L+K
Sbjct: 252 -NVQ-NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 637 CTNLIPMD-----SNGFSDPF----IKLYLKPDLHKRKYKTGVKWKT------------- 674
+ P D +P I ++ L WK
Sbjct: 310 YLDCRPQDLPREVLTT--NPRRLSIIAESIRDGLATWDN-----WKHVNCDKLTTIIESS 362
Query: 675 ---LNP-----IFNEEFAI---ETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723
L P +F + ++ I L + +W +D + +
Sbjct: 363 LNVLEPAEYRKMF-DRLSVFPPSAHIPT---ILLSL-IWFDV--IKSDVMVVVNKLHK-Y 414
Query: 724 GDRLRHWVDMMKYPDHKHEGIHNLSIK 750
+ + I ++ ++
Sbjct: 415 SLVEKQPKESTIS-------IPSIYLE 434
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 1e-04
Identities = 65/526 (12%), Positives = 141/526 (26%), Gaps = 152/526 (28%)
Query: 207 FKVSGLPYECLDHYTTEAVSGLPYECLDH-YTTEAGLPKYTIPKKTQPEKLAFNRRPIEN 265
F +S + E ++ + E D Y KY + + KL R+ +
Sbjct: 93 FLMSPIKTEQRQ---PSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL---RQALLE 146
Query: 266 LKPPTWSLKI---ASANKSSEDNSSSDEEDARLARSKQVVSDARATC-PNREV--VTTAR 319
L+P + I + K+ +A V + C + ++ +
Sbjct: 147 LRPAKN-VLIDGVLGSGKTW------------VA--LDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 320 SSYP----------CSEEEEEEEVETDAEKSPSLKSIDIFTAISEFTS----------IA 359
+ P + + +D + L+ I + +
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251
Query: 360 NVSDTEQ--------PIVIPIRKIA-----SGGSVKLEPQSFPRPT-SPVDSEKFSSSAT 405
NV + + I++ R S + T +P + +
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL 311
Query: 406 VRSSPLMSRHTLPLTVNENSISP--VSPLSPICNGNFNT----QQESSGTLKRGVI---- 455
LP V + +P +S ++ T + + L +I
Sbjct: 312 -----DCRPQDLPREVL--TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-IIESSL 363
Query: 456 -----TEEKEYFVTS---QADTNLGSIELTV--TYDSTTCSLHVT--LHRAKGLRAMDIH 503
E ++ F ++ +I L++ + + V LH+ L
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSL------ 416
Query: 504 GTSDPFCKLNLVPLTKTSHRLRTKTCLRTIN-PEFHEKL-TFYSVSETDLSLQSLHILVL 561
+ T + + + ++ N H + Y++ + + S ++
Sbjct: 417 ------VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPK---TFDSDDLIPP 467
Query: 562 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTL 621
D+Y + +G H H E +FL
Sbjct: 468 YLDQYFYSHIG-----------H-----------HLKNIEHPERMTLFR-----MVFLDF 500
Query: 622 CFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYK 667
F +K I+ + S + +L + YK
Sbjct: 501 RFLEQK-------IRHDSTAWNASGSILNTLQQL--------KFYK 531
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 35/268 (13%), Positives = 66/268 (24%), Gaps = 96/268 (35%)
Query: 39 SLTASVLRNRLVSFITSLSDVSLFGF-VHRLQTGWSVKAGQLRR-----------WKKPE 86
+ V + V F + W + + +
Sbjct: 165 WVALDVCLSYKV--------QCKMDFKIF-----W-LNLKNCNSPETVLEMLQKLLYQID 210
Query: 87 PLDPTEQEKIEEVIKRAEALDYIEQERVGRLVER---------VDNMK------------ 125
P + + + R ++ Q + RL++ + N++
Sbjct: 211 PNWTSRSDHSSNIKLRIHSI----QAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266
Query: 126 --------RNVTGGAAAAHACALCGDKFSPIFDR---LGLFGAKCLVC--HDCRGGVCQ- 171
+ VT +AA + D S L K L C D V
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDLPREVLTT 325
Query: 172 ---KCGIESVSASKKENIWLCKICAETREMWKKSNAW----FFKVSGLPYECLDHYTTEA 224
+ I ++ S ++ + T + WK N + S L+
Sbjct: 326 NPRRLSI--IAESIRDGL-------ATWDNWKHVNCDKLTTIIESS---LNVLE------ 367
Query: 225 VSGLPYECLDHYTTEAGLPKYT-IPKKT 251
P E + + P IP
Sbjct: 368 ----PAEYRKMFDRLSVFPPSAHIPTIL 391
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 2e-05
Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 13/96 (13%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +AK A + + + L + + T+ +R P + + F +
Sbjct: 16 LCVGVKKAKFDGAQE---KFNTYVTLKVQNVESTTIAVRGS------QPSWEQDFMF-EI 65
Query: 547 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 582
+ DL L + V + +G PL +R
Sbjct: 66 NRLDLGLT---VEVWNKGLIWDTMVGTVWIPLRTIR 98
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 4e-04
Identities = 17/114 (14%), Positives = 37/114 (32%), Gaps = 25/114 (21%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V + K + + ++ L ++ + T + + P + ++F E
Sbjct: 16 LCVGVKKAKFDGAQEK---FNTYVTLKVQ----NVESTT-IAVRGSQPSWEQDFMFEINR 67
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEG 743
+L L + VW+K + +G W+ + EG
Sbjct: 68 LDLG---LTVEVWNKGLIW-DTMVG-------------TVWIPLRTIRQSNEEG 104
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 2e-05
Identities = 19/118 (16%), Positives = 38/118 (32%), Gaps = 13/118 (11%)
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYS 545
+L V L LR G +D K+ + S L + + F +
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFR-----WP 71
Query: 546 VSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL--RPHISRDLCLNLCKHYPVP 600
V+ + + L I + + K + +G R L ++ + L + +
Sbjct: 72 VASSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIK 129
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 23/106 (21%), Positives = 44/106 (41%), Gaps = 7/106 (6%)
Query: 482 STTCSLHVTLHRAKGLRAMDIHGTS--DPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFH 538
L V + + L ++ + S DP + + + + + +T NP +
Sbjct: 494 WRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWD 553
Query: 539 EKLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP 583
+ F V+ DL+L + +V D D DF+G++ P N L+
Sbjct: 554 MEFEF-EVTVPDLAL--VRFMVEDYDSSSKNDFIGQSTIPWNSLKQ 596
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624 | Back alignment and structure |
|---|
Score = 43.0 bits (100), Expect = 4e-04
Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 10/108 (9%)
Query: 626 KKRALIVNLIKCTNLIPMDSNGFS--DPFIKLYL---KPDLHKRKYKTGVKWKTLNPIFN 680
+ L V +I L ++ N S DP + + + D R+ + NP ++
Sbjct: 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAV-ITNNGFNPRWD 553
Query: 681 EEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDR 726
EF E + +L+ + V D D ND++G + +G R
Sbjct: 554 MEFEFEVTVPDLA--LVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR 599
|
| >2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 76 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 6e-05
Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 12/63 (19%)
Query: 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193
+ CA C + + + C C VC+ C + W CK+C+
Sbjct: 24 SDRTCARCQESLGRLSPK----TN---TCRGCNHLVCRDC-----RIQESNGTWRCKVCS 71
Query: 194 ETR 196
Sbjct: 72 GPS 74
|
| >1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2 Length = 88 | Back alignment and structure |
|---|
Score = 38.1 bits (88), Expect = 8e-04
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 10/69 (14%)
Query: 138 CALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKC---GIESVSASKKENIWLCKICAE 194
C +C ++L + C +C Q C + + +W C C
Sbjct: 19 CVVCRQMTVASGNQL-------VECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTR 71
Query: 195 TREMWKKSN 203
+ + N
Sbjct: 72 QMKRMAQKN 80
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 100.0 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 100.0 | |
| 1zbd_B | 134 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 100.0 | |
| 2zet_C | 153 | Melanophilin; complex, GTP-binding protein, GTPase | 100.0 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.95 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.94 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.94 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.94 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.88 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.87 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.87 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.86 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.86 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.86 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.86 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.86 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.85 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.85 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.85 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.85 | |
| 2z0u_A | 155 | WW domain-containing protein 1; C2 domain, alterna | 99.84 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.84 | |
| 2bwq_A | 129 | Regulating synaptic membrane exocytosis protein 2; | 99.84 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.84 | |
| 2d8k_A | 141 | Synaptotagmin VII; exocytosis, calcium binding, ly | 99.84 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.83 | |
| 2chd_A | 142 | Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium | 99.83 | |
| 1ugk_A | 138 | Synaptotagmin IV, KIAA1342; beta sandwich, structu | 99.83 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.83 | |
| 2dmg_A | 142 | KIAA1228 protein; beta-sandwich, structural genomi | 99.83 | |
| 3fdw_A | 148 | Synaptotagmin-like protein 4; structural genomics, | 99.83 | |
| 1v27_A | 141 | Regulating synaptic membrane exocytosis protein 2; | 99.83 | |
| 1rsy_A | 152 | Synaptotagmin I; calcium/phospholipid binding prot | 99.83 | |
| 3f04_A | 143 | Synaptotagmin-1; C2A, calcium, cell junction, cyto | 99.82 | |
| 1wfm_A | 138 | Synaptotagmin XIII; C2 domain, exocytosis, neurotr | 99.82 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.82 | |
| 2enp_A | 147 | B/K protein; C2 type 1,beta sandwich, structural g | 99.81 | |
| 3n5a_A | 138 | Synaptotagmin-7; calcium/phospholipid binding prot | 99.81 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.81 | |
| 1rh8_A | 142 | Piccolo protein; beta-sandwich, metal binding prot | 99.8 | |
| 2b3r_A | 134 | Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA | 99.8 | |
| 1tjx_A | 159 | Similar to synaptotagmini/P65; C2B domain, calcium | 99.8 | |
| 2cm5_A | 166 | Rabphilin-3A; protein transport, zinc-finger, Ca2+ | 99.79 | |
| 3fbk_A | 153 | RGS3, RGP3, regulator of G-protein signaling 3; al | 99.79 | |
| 1w15_A | 153 | Synaptotagmin IV; metal binding protein, endocytos | 99.79 | |
| 3rdl_A | 137 | Protein kinase C alpha type; protein kinase PKC, t | 99.78 | |
| 2r83_A | 284 | Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel | 99.78 | |
| 1a25_A | 149 | CALB, protein kinase C (beta); calcium++/phospholi | 99.78 | |
| 2q3x_A | 171 | Regulating synaptic membrane exocytosis protein 1; | 99.77 | |
| 1dqv_A | 296 | Synaptotagmin III; beta sandwich, calcium ION, C2 | 99.75 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.74 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.73 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.73 | |
| 2dmh_A | 140 | Myoferlin; beta-sandwich, FER-1-like protein 3, mu | 99.73 | |
| 2ep6_A | 133 | MCTP2 protein; beta sandwich, Ca2+ binding, membra | 99.72 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.72 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.72 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.72 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.71 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.7 | |
| 3kwu_A | 148 | MUNC13-1; calcium binding protein, phospholipid bi | 99.7 | |
| 1rlw_A | 126 | Phospholipase A2, CALB domain; hydrolase, C2 domai | 99.69 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.69 | |
| 2fk9_A | 157 | Protein kinase C, ETA type; ATP-binding, metal-bin | 99.69 | |
| 1gmi_A | 136 | Protein kinase C, epsilon type; PKC, C2 domain, X- | 99.69 | |
| 3b7y_A | 153 | E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL- | 99.69 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.68 | |
| 3m7f_B | 176 | E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1 | 99.67 | |
| 1wfj_A | 136 | Putative elicitor-responsive gene; C2 domain, rike | 99.66 | |
| 2csz_A | 76 | Synaptotagmin-like protein 4; exophilin 2, granuph | 99.66 | |
| 3pyc_A | 132 | E3 ubiquitin-protein ligase smurf1; phospholipid b | 99.65 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.61 | |
| 2nq3_A | 173 | Itchy homolog E3 ubiquitin protein ligase; C2 doma | 99.6 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.5 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.48 | |
| 2cjt_A | 131 | UNC-13 homolog A, MUNC13-1; phorbol-ester binding, | 99.47 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.47 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.46 | |
| 3jzy_A | 510 | Intersectin 2; C2 domain, structural genomics cons | 99.44 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.43 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.43 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.43 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.42 | |
| 3nsj_A | 540 | Perforin-1; pore forming protein, immune system; H | 99.4 | |
| 3l9b_A | 144 | Otoferlin; C2-domain, beta-sheets, cell membrane, | 99.35 | |
| 2cjs_A | 167 | UNC-13 homolog A, MUNC13-1; neurotransmitter trans | 99.34 | |
| 3pfq_A | 674 | PKC-B, PKC-beta, protein kinase C beta type; phosp | 99.34 | |
| 1djx_A | 624 | PLC-D1, phosphoinositide-specific phospholipase C, | 99.33 | |
| 1cjy_A | 749 | CPLA2, protein (cytosolic phospholipase A2); lipid | 99.32 | |
| 3bc1_B | 59 | Synaptotagmin-like protein 2; RAB27, GTPase, RAB, | 99.23 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.18 | |
| 3bxj_A | 483 | RAS GTPase-activating protein syngap; GTPase activ | 99.13 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 99.0 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.98 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.97 | |
| 3ohm_B | 885 | 1-phosphatidylinositol-4,5-bisphosphate phosphodi | 98.91 | |
| 3qr0_A | 816 | Phospholipase C-beta (PLC-beta); PH domain, EF han | 98.91 | |
| 2zkm_X | 799 | 1-phosphatidylinositol-4,5-bisphosphate phosphodie | 98.88 | |
| 2a20_A | 62 | Regulating synaptic membrane exocytosis protein 2; | 98.78 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.5 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.49 | |
| 1yrk_A | 126 | NPKC-delta, protein kinase C, delta type; C2 domai | 98.23 | |
| 2enj_A | 138 | NPKC-theta, protein kinase C theta type; beta-sand | 98.15 | |
| 1joc_A | 125 | EEA1, early endosomal autoantigen 1; FYVE domain, | 96.61 | |
| 1vfy_A | 73 | Phosphatidylinositol-3-phosphate binding FYVE doma | 94.05 | |
| 2yw8_A | 82 | RUN and FYVE domain-containing protein 1; structur | 93.9 | |
| 1z2q_A | 84 | LM5-1; membrane protein, FYVE domain, zinc-finger; | 93.29 | |
| 1y02_A | 120 | CARP2, FYVE-ring finger protein sakura; zinc-bindi | 93.26 | |
| 3t7l_A | 90 | Zinc finger FYVE domain-containing protein 16; str | 93.14 | |
| 1wfk_A | 88 | Zinc finger, FYVE domain containing 19; riken stru | 92.55 | |
| 3zyq_A | 226 | Hepatocyte growth factor-regulated tyrosine kinas | 92.0 | |
| 1x4u_A | 84 | Zinc finger, FYVE domain containing 27 isoform B; | 91.8 | |
| 1dvp_A | 220 | HRS, hepatocyte growth factor-regulated tyrosine k | 91.77 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 90.96 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 90.43 | |
| 3l4c_A | 220 | Dedicator of cytokinesis protein 1; DOCK180, DOCK1 | 90.42 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 89.12 | |
| 1e7u_A | 961 | Phosphatidylinositol 3-kinase catalytic subunit; p | 88.09 | |
| 3mpx_A | 434 | FYVE, rhogef and PH domain-containing protein 5; s | 87.27 | |
| 2vrw_B | 406 | P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP | 86.77 | |
| 3hhm_A | 1091 | Phosphatidylinositol-4,5-bisphosphate 3-kinase cat | 86.6 | |
| 2y3a_A | 1092 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 85.42 | |
| 4ayc_A | 138 | E3 ubiquitin-protein ligase RNF8; DNA damage, K63 | 83.36 | |
| 2wxf_A | 940 | Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca | 83.35 | |
| 4ayb_P | 48 | DNA-directed RNA polymerase; transferase, multi-su | 81.56 | |
| 1e4u_A | 78 | Transcriptional repressor NOT4; gene regulation, t | 80.07 |
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-46 Score=394.64 Aligned_cols=269 Identities=34% Similarity=0.542 Sum_probs=241.2
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|.|++.|+...+.|.|+|++|+||+.+|..+.+||||+|++.++.. ..++|+++.+++||+|||+|.|. +..
T Consensus 3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~--~~~~T~~~~~~~nP~wne~f~f~-v~~ 79 (284)
T 2r83_A 3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFK-VPY 79 (284)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTT--SCEECCCCCSCSSCEEEEEEEEC-CCG
T ss_pred cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCC--ceEeCCcccCCCCCeeCceEEEE-ech
Confidence 569999999999999999999999999999999999999999999987543 57899999999999999999995 676
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccccc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK 627 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~ 627 (754)
.++....|.|.|||+|.++. +|||++.|+|.++..+.....|+.|.. .. .......|+|.+.+.|.+..
T Consensus 80 ~~~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~------~~----~~~~~~~G~i~l~l~~~p~~ 149 (284)
T 2r83_A 80 SELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS------AE----KEEQEKLGDICFSLRYVPTA 149 (284)
T ss_dssp GGCTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBC------CS----SCCCCCCCEEEEEEEEETTT
T ss_pred HHhCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeec------cc----cccccccccEEEEEEecCcC
Confidence 67777899999999999987 999999999999987766666666642 11 01134679999999999999
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
+.|.|.|++|+||+.+|.+|.+||||+|++.+++.. .++||.++++|+||+|||+|.|.+...++....|.|+|||++.
T Consensus 150 ~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~ 229 (284)
T 2r83_A 150 GKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDK 229 (284)
T ss_dssp TEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCS
T ss_pred CceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCC
Confidence 999999999999999999999999999999865433 3889999999999999999999998888888899999999999
Q ss_pred CCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
+++|++||.+.|++.+.+.++.||++|+.+|+.++++||.|++.
T Consensus 230 ~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~ 273 (284)
T 2r83_A 230 IGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 273 (284)
T ss_dssp SSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred CCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence 99999999999999999999999999999999999999999874
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-46 Score=395.23 Aligned_cols=269 Identities=30% Similarity=0.469 Sum_probs=235.2
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|+|++.|+...+.|.|+|++|++|+.+|..|.+||||+|++.+++. ..++|+++++|+||+|||+|.|. +..
T Consensus 4 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~-v~~ 80 (296)
T 1dqv_A 4 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQFS-VPL 80 (296)
T ss_dssp CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEEE-CCG
T ss_pred CeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCC--eeEeCCccCCCCCCcEeeEEEEE-ecH
Confidence 579999999999999999999999999999999999999999999986543 67899999999999999999995 777
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeec-CcccCC-CCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFP-LNRLRP-HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~-L~~L~~-~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
.++....|+|.|||+|.+++ +|||++.|+ +.++.. ......|..|. ... ......|+|.+++.|.+
T Consensus 81 ~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~------~~~-----~~~~~~G~i~vsl~y~~ 149 (296)
T 1dqv_A 81 AELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL------EGG-----SEKADLGELNFSLCYLP 149 (296)
T ss_dssp GGGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECB------CCS-----SCCSCCCEEEEEEEEET
T ss_pred HHhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccc------ccc-----ccccccceEEEEEEecc
Confidence 77777899999999999987 999999996 444432 22223344432 211 11356799999999999
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
..+.|.|.|++|+||+++|.+|.+||||++++.+++.. .++||.++++|+||+|||+|.|.|...++....|.|+|||+
T Consensus 150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~ 229 (296)
T 1dqv_A 150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY 229 (296)
T ss_dssp TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence 99999999999999999999999999999999865433 48999999999999999999999988788778999999999
Q ss_pred cCCCCCceeEEEEEecCCCCc-hhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 705 DYGKSNDYLGCLELCCNSKGD-RLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s~ge-~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
+.+++|++||.+.|++.+.+. +..||++|+.+|++++++||.|++..
T Consensus 230 d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~~ 277 (296)
T 1dqv_A 230 DCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEEK 277 (296)
T ss_dssp CSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBCC
T ss_pred CCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccCcc
Confidence 999999999999999999887 89999999999999999999999865
|
| >1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-37 Score=292.21 Aligned_cols=129 Identities=47% Similarity=1.039 Sum_probs=117.3
Q ss_pred ccCCCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCc
Q psy7848 81 RWKKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCL 160 (754)
Q Consensus 81 ~~~~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~ 160 (754)
++++.+|||+||+++|++||+||++++++|++||++|+++|+++|+++.++ ++++|++|+++|| |++++++
T Consensus 3 ~~~dls~LteeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~~k~~~~~~--~~~~C~~C~~~~g-------~l~~~g~ 73 (134)
T 1zbd_B 3 HMRKQEELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGD--GVNRCILCGEQLG-------MLGSASV 73 (134)
T ss_dssp -----CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSC--SSSBCSSSCCBCS-------TTSCCEE
T ss_pred CCCCcccCCHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHhccC--CCccccccCCCcc-------cccCCCC
Confidence 467889999999999999999999999999999999999999999997764 5699999999999 8999999
Q ss_pred cccccccccccccccccccCCCCCCceeeccchhhhhhhhhcccccccccCCCcccccccccccccCCCcccCCcccccC
Q psy7848 161 VCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGLPYECLDHYTTEA 240 (754)
Q Consensus 161 ~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (754)
+|.+|+++||++||++++ +++++.+|+|++|+++|++|++||+|||+
T Consensus 74 ~C~~C~~~VC~~C~~~~~-~~~~~~~W~C~vC~k~rel~~kSG~Wf~~-------------------------------- 120 (134)
T 1zbd_B 74 VCEDCKKNVCTKCGVETS-NNRPHPVWLCKICLEQREVWKRSGAWFFK-------------------------------- 120 (134)
T ss_dssp ECTTTCCEEETTSEEECC-CSSSSCCEEEHHHHHHHHHHHHTSHHHHT--------------------------------
T ss_pred CCCCCCcccccccCCccC-CCCCccceechhhHHHHHHHHhhhHHHHh--------------------------------
Confidence 999999999999999996 45678899999999999999999999999
Q ss_pred CCCcccCCCCC
Q psy7848 241 GLPKYTIPKKT 251 (754)
Q Consensus 241 ~l~k~~~p~~~ 251 (754)
++|++++|.++
T Consensus 121 ~~~k~~~p~~~ 131 (134)
T 1zbd_B 121 GFPKQVLPQPM 131 (134)
T ss_dssp SCCCCCCCCCC
T ss_pred cCcccccCCCC
Confidence 78999999887
|
| >2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=297.01 Aligned_cols=132 Identities=21% Similarity=0.392 Sum_probs=118.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhh--ccC--CCccccccccccccCCCccccccccCCC
Q psy7848 83 KKPEPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRN--VTG--GAAAAHACALCGDKFSPIFDRLGLFGAK 158 (754)
Q Consensus 83 ~~~~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~--~~~--~~~~~~~C~~C~~~~g~~~~~~~~~~~~ 158 (754)
.+..+|||||+++||+||+||++|+++||+||++|+++|++++.+ ..+ +..++++|++|+++|| |++|+
T Consensus 12 ~dLs~LteeEr~~Il~VL~Rd~~l~~~EeeRi~kLk~~l~~~~~k~~~~~~~~~~~~~~C~~C~~~fg-------~l~~~ 84 (153)
T 2zet_C 12 LDLSTLTDEEAEHVWAVVQRDFDLRRREEERLQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYR-------LLLNS 84 (153)
T ss_dssp CCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTGGGTBCTTTCCBGG-------GCSSC
T ss_pred CCcccCCHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHHHHHHHhhhhcccccCCCccchhhcCccc-------cccCC
Confidence 567899999999999999999999999999999999999999543 333 3457899999999999 89999
Q ss_pred CccccccccccccccccccccCCCCCCceeeccchhhhhhhhhcccccccccCCCcccccccccccccCC
Q psy7848 159 CLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFKVSGLPYECLDHYTTEAVSGL 228 (754)
Q Consensus 159 ~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~~~~~~~~~~~~~~~~~~~~~ 228 (754)
+++|.||+++||++|+++++ ++.+|+|++|++++++|++||+|||++++++|+ +||+|+|+..
T Consensus 85 g~~C~~C~~~VC~~C~~~~~----~~~~W~C~vC~k~rel~~kSGeWf~~~~~~rfk---~~gs~~v~~s 147 (153)
T 2zet_C 85 RRQCLECSLFVCKSCSHAHP----EEQGWLCDPCHLARVVKIGSLEWYYQHVRARFK---RFGSAKVIRS 147 (153)
T ss_dssp CEECTTTCCEECGGGEECCS----SSSSCEEHHHHHHHHHHHHHCHHHHHHHHTTSS---SCHHHHHHHH
T ss_pred CCcCCCCCchhhcccccccC----CCCcEeeHHHHHHHHHHHhccHHHHHHHHhhhc---cCcchHHhhh
Confidence 99999999999999999887 588999999999999999999999997666665 7999977443
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.5e-28 Score=227.20 Aligned_cols=136 Identities=38% Similarity=0.637 Sum_probs=128.3
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|.+++.|.+..+.|.|.|++|+||+.++.+|.+||||++++.++... .+++|+++++|+||+|||+|.|.+...++
T Consensus 2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l 81 (138)
T 3n5a_A 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL 81 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence 69999999999999999999999999999999999999999999865444 38899999999999999999999988888
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
....|.|+|||++.+++|++||.+.|++.+.+.+..||++|+.+|++++++||.|.|
T Consensus 82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~p 138 (138)
T 3n5a_A 82 RETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLKA 138 (138)
T ss_dssp GGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeecCC
Confidence 788999999999999999999999999999999999999999999999999999986
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.2e-27 Score=226.51 Aligned_cols=139 Identities=28% Similarity=0.474 Sum_probs=122.2
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
....|+|.+++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++... .++||+++++|+||+|||+|.|.+..
T Consensus 13 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 92 (153)
T 1w15_A 13 PSGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 92 (153)
T ss_dssp ---CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCS
T ss_pred CccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCH
Confidence 56789999999999999999999999999999999999999999999875433 28899999999999999999999988
Q ss_pred CccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
.++....|.|+|||++.+++|++||.+.|++...+.+..||++|+.+|+.++++||.|.+
T Consensus 93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~~~~~~Wh~L~~ 152 (153)
T 1w15_A 93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152 (153)
T ss_dssp SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCCCeeeecccccc
Confidence 888778999999999999999999999999999889999999999999999999999975
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-27 Score=226.92 Aligned_cols=140 Identities=34% Similarity=0.545 Sum_probs=130.8
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
....|+|.++|.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.+++.. .++||+++++|+||+|||+|.|.|..
T Consensus 8 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 87 (159)
T 1tjx_A 8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (159)
T ss_dssp GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred cCcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCH
Confidence 46789999999999999999999999999999999999999999999765433 38899999999999999999999988
Q ss_pred CccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
.++....|.|+|||++.++.|++||.+.|++.+.+.+++||++|+.+|+..+++||.|.+.
T Consensus 88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~ 148 (159)
T 1tjx_A 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (159)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCc
Confidence 8887889999999999999999999999999999999999999999999999999999874
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-26 Score=226.23 Aligned_cols=141 Identities=50% Similarity=0.840 Sum_probs=129.5
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
....|+|.+++.|.+..+.|.|.|++|+||++++.+|.+||||+|++.++.++ .++||+++++|+||+|||+|.|.+..
T Consensus 20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 99 (166)
T 2cm5_A 20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 99 (166)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred cCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcch
Confidence 46789999999999999999999999999999999999999999999875443 48999999999999999999999987
Q ss_pred CccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
.++....|.|+|||++.+++|++||.+.|++...+++..||++|+..|+..+++||.|.++.
T Consensus 100 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~~~ 161 (166)
T 2cm5_A 100 SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNEN 161 (166)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC--
T ss_pred HhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCCcc
Confidence 78878899999999999999999999999999999999999999999999999999998753
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-23 Score=202.72 Aligned_cols=128 Identities=17% Similarity=0.189 Sum_probs=111.0
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc--ceeeeeeecCCCCCccceeEEEEee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k--~k~KT~v~kkTlNP~wNEtF~F~V~ 688 (754)
....|+|+++|.|.+..+.|.|.|++|+||+++|.+|.+||||++++.+..+. .++||+++++|+||+|||+|.|.|.
T Consensus 26 ~~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~ 105 (155)
T 2z0u_A 26 AVGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMS 105 (155)
T ss_dssp --CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECC
T ss_pred cCCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcC
Confidence 46789999999999999999999999999999999999999999999874333 3899999999999999999999998
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
..++....|.|+|||+|.+++|++||.+.|++.... ..+....+||.|++
T Consensus 106 ~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~-----------~~~~~~~~W~~L~~ 155 (155)
T 2z0u_A 106 YPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC-----------RSGERSTRWYNLLS 155 (155)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSC-----------TTCCCEEEEEEEBC
T ss_pred HHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHcc-----------CCCCccccceEccC
Confidence 777778899999999999999999999999998641 12345667777764
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-22 Score=193.01 Aligned_cols=130 Identities=29% Similarity=0.463 Sum_probs=113.4
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCC-CCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~ 688 (754)
...+|+|.+++.|.+..+.|.|.|++|+||++++ .+|.+||||+|++.++... .++||+++++|+||+|||+|.|.|.
T Consensus 6 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 85 (148)
T 3fdw_A 6 IFVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIP 85 (148)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECC
T ss_pred CccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeC
Confidence 4678999999999999999999999999999998 5899999999999876543 4899999999999999999999998
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
..++....|.|+|||++.+++|++||.+.|++... . .+..+++|+.|+++..
T Consensus 86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l----------~--~~~~~~~W~~L~~~~~ 137 (148)
T 3fdw_A 86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSW----------K--LDKKLDHCLPLHGKIS 137 (148)
T ss_dssp STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHH----------H--HHCCSEEEEECBCC--
T ss_pred hhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccc----------c--ccCCccceEECcCccc
Confidence 88888889999999999999999999999998742 1 1235678888888764
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.87 E-value=4.5e-22 Score=191.72 Aligned_cols=128 Identities=25% Similarity=0.435 Sum_probs=110.1
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
....|+|.|+|.|.+..+.|.|.|++|+||++++ +|.+||||+|++.++... .++||+++++|+||+|||+|.|.+..
T Consensus 10 ~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 88 (153)
T 3fbk_A 10 HKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88 (153)
T ss_dssp ---CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCG
T ss_pred cCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEeccc
Confidence 5789999999999999999999999999999998 689999999999876533 48999999999999999999999977
Q ss_pred CccCCCeEEEEEEEccCCCC-CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCC
Q psy7848 690 TELSKQTLVITVWDKDYGKS-NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKP 751 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~-ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~ 751 (754)
.++. ..|.|+|||++.++. |+|||.+.|++.. +.+|+..+++||.|+++.
T Consensus 89 ~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~-----------l~~~~~~~~~W~~L~~~~ 139 (153)
T 3fbk_A 89 EDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKS-----------LLTPDKEISGWYYLLGEH 139 (153)
T ss_dssp GGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHH-----------HTC--CCEEEEEECBCTT
T ss_pred HHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHH-----------hcCCCCccccEEECCChh
Confidence 6765 459999999999876 9999999999873 345678899999998864
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-21 Score=188.83 Aligned_cols=127 Identities=34% Similarity=0.541 Sum_probs=112.3
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|.++|.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..++||+++++|+||+|||+|.|.+...
T Consensus 25 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~ 103 (152)
T 1rsy_A 25 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS 103 (152)
T ss_dssp -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC-CSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred CCCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCC-CceEeccccCCCCCCcCcccEEEeecHH
Confidence 456899999999999999999999999999999999999999999998653 4588999999999999999999999877
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
++....|.|+|||++.+++|++||.+.|++... ..+..++.||.|++.
T Consensus 104 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l------------~~~~~~~~W~~L~~~ 151 (152)
T 1rsy_A 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV------------DFGHVTEEWRDLQSA 151 (152)
T ss_dssp HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGC------------CCSSCEEEEEECBCC
T ss_pred HcCCCEEEEEEEECCCCCCCcEEEEEEEEchhc------------cCCCCcceEEECCCC
Confidence 777899999999999999999999999999854 235567788888764
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=185.14 Aligned_cols=125 Identities=18% Similarity=0.180 Sum_probs=108.4
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|+++|.|.+..+.|.|.|++|+ ++|.+|.+||||+|++.++.+..++||+++++|+||+|||+|.|.+...
T Consensus 9 ~~~~G~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~ 85 (138)
T 1wfm_A 9 WNQAPKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85 (138)
T ss_dssp CSSCCEEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTT
T ss_pred CCcceEEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHH
Confidence 3568999999999999999999999999 4688999999999999875445588999999999999999999999888
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
++....|.|+|||+|.+++|++||.+.|++.... .+...+.|+.|.+.
T Consensus 86 ~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~------------~~~~~~~W~~L~~~ 133 (138)
T 1wfm_A 86 ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS------------VPLGAAQWGELKTS 133 (138)
T ss_dssp SSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSS------------SCTTCCEEEECCCC
T ss_pred HcCCCEEEEEEEECCCCCCCcEEEEEEEEccccc------------CcccccceeeCcCC
Confidence 8888999999999999999999999999998752 13345566666653
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-22 Score=186.85 Aligned_cols=127 Identities=34% Similarity=0.549 Sum_probs=113.9
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|.+++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..+++|+++++|+||+|||+|.|.+...
T Consensus 17 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~ 95 (143)
T 3f04_A 17 VEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS 95 (143)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCC-SCCEECCCCCSCSSCEEEEEEEECCCHH
T ss_pred ccCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCC-CccEECccCcCCCCCcCcCeEEEeecHh
Confidence 567899999999999999999999999999999999999999999997653 4589999999999999999999999877
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
++....|.|+|||++.+++|++||.+.|++... .++..++.|+.|++.
T Consensus 96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l------------~~~~~~~~W~~L~~~ 143 (143)
T 3f04_A 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV------------DFGHVTEEWRDLQSA 143 (143)
T ss_dssp HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGC------------CTTSCEEEEEECBCC
T ss_pred hcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHc------------cCCCCcceEEECcCC
Confidence 777899999999999999999999999999854 345677788888763
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-22 Score=188.25 Aligned_cols=125 Identities=32% Similarity=0.540 Sum_probs=108.1
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
....|+|.+++.|.+..+.|.|.|++|+||++++.+| +||||+|++.++... .+++|+++++|+||+|||+|.|.+..
T Consensus 7 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 85 (142)
T 2dmg_A 7 GSPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSL 85 (142)
T ss_dssp SCSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCH
T ss_pred CCCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecH
Confidence 4678999999999999999999999999999999999 999999999876543 48999999999999999999999987
Q ss_pred CccCCCeEEEEEEEccCCCC--CceeEEEEEecCCC--CchhhhHHhhhcC
Q psy7848 690 TELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSK--GDRLRHWVDMMKY 736 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~--ddfLG~v~L~l~s~--ge~~~hW~~ll~~ 736 (754)
.++....|.|+|||++.+++ +++||.+.|++... +....+||+|...
T Consensus 86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~ 136 (142)
T 2dmg_A 86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED 136 (142)
T ss_dssp HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence 77777899999999998764 57999999999863 3355666666543
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.86 E-value=3.3e-21 Score=182.06 Aligned_cols=131 Identities=27% Similarity=0.381 Sum_probs=113.1
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCC-CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEE-ee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSN-GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~-G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~-V~ 688 (754)
....|+|.+++.|.+..+.|.|.|++|+||++++.+ |.+||||+|++.++ +..++||+++++|+||+|||+|.|. +.
T Consensus 5 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~-~~~~~kT~v~~~t~nP~wne~f~f~~v~ 83 (138)
T 1ugk_A 5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRKTLDPAFDETFTFYGIP 83 (138)
T ss_dssp CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT-TCSEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred CCccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecC-CCceEecCcCcCCCCCcEeeEEEEcCcC
Confidence 467899999999999999999999999999999985 89999999999864 3469999999999999999999996 87
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCCC
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS 753 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~~ 753 (754)
..++....|.|+|||++.+++|++||.+.|++.... .. ......|+.|++++.+
T Consensus 84 ~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~----------~~-~~~~~~~~~l~~~~~s 137 (138)
T 1ugk_A 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE----------LS-EGKMLMNREIISGPSS 137 (138)
T ss_dssp STTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCC----------CT-TCCEEEEEECBSSSSC
T ss_pred HHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHcc----------CC-CCcchhhhhhhcCCCC
Confidence 777778899999999999999999999999998632 11 2344567888877654
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-21 Score=181.14 Aligned_cols=123 Identities=24% Similarity=0.434 Sum_probs=103.8
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCC-cceeeeeeecCCCCCccceeEEEE-eecC
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIE-TKIT 690 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~wNEtF~F~-V~~~ 690 (754)
..|+|.+++.|.+..+.|.|.|++|+||++++.+|.+||||++++.++.. ..++||+++++|+||+|||+|.|. +...
T Consensus 3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 82 (129)
T 2bwq_A 3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 82 (129)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence 57999999999999999999999999999999999999999999987653 359999999999999999999999 4556
Q ss_pred ccCCCeEEEEEEEccCCCC--CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 691 ELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~--ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
++....|.|+|||++.++. +++||.+.|++... ... ...+||+|+
T Consensus 83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l----------~~~---~~~~W~~Lq 129 (129)
T 2bwq_A 83 EFRERMLEITLWDQARVREEESEFLGEILIELETA----------LLD---DEPHWYKLQ 129 (129)
T ss_dssp GGGGCEEEEEEEEC-------CEEEEEEEEEGGGC----------CCS---SCEEEEECC
T ss_pred HhcCCeEEEEEEECCcCcCcCCceeEEEEEEcccc----------CCC---cCCccEECc
Confidence 7777899999999999887 99999999999853 111 167888875
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-21 Score=183.29 Aligned_cols=129 Identities=23% Similarity=0.395 Sum_probs=112.3
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCC-cceeeeeeecCCCCCccceeEEEE-ee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIE-TK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~-k~k~KT~v~kkTlNP~wNEtF~F~-V~ 688 (754)
....|+|.+++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++.. ..++||+++++|+||+|||+|.|. +.
T Consensus 4 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~ 83 (141)
T 1v27_A 4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 83 (141)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred CCcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence 4578999999999999999999999999999999999999999999987653 359999999999999999999999 56
Q ss_pred cCccCCCeEEEEEEEccCCCC--CceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 689 ITELSKQTLVITVWDKDYGKS--NDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~--ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
..++....|.|+|||++.++. +++||.+.|++... ... ...+||.|++...
T Consensus 84 ~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l----------~~~---~~~~W~~L~~~~~ 136 (141)
T 1v27_A 84 RREFRERMLEITLWDQARVREEESEFLGEILIELETA----------LLD---DEPHWYKLQTHDS 136 (141)
T ss_dssp TTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGC----------CCS---SEEEEEECBCCSS
T ss_pred HHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEcccc----------CCC---CCCceEECccccc
Confidence 667778999999999999887 99999999999853 111 2678888887653
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.6e-21 Score=182.47 Aligned_cols=129 Identities=30% Similarity=0.410 Sum_probs=111.5
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEe-ec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIET-KI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V-~~ 689 (754)
....|+|.+++.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..++||+++++|+||+|||+|.|.+ +.
T Consensus 9 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~~~~~ 87 (141)
T 2d8k_A 9 RENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDK-KHKLETKVKRKNLNPHWNETFLFEGFPY 87 (141)
T ss_dssp CCCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCC-SSEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred CceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCC-CccEeCceEcCCCCCccccEEEECccCH
Confidence 356899999999999999999999999999999999999999999997643 3589999999999999999999994 44
Q ss_pred CccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
.++....|.|+|||++.+++|++||.+.|++.... .+...+.|+.|++..-
T Consensus 88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~W~~L~~~~~ 138 (141)
T 2d8k_A 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVD------------LTQMQTFWKDLKPSGP 138 (141)
T ss_dssp HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSC------------TTSCEEEEECCEECCC
T ss_pred HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhc------------CCCCccEEEECcCCCC
Confidence 55667899999999999999999999999998642 1335678888877643
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-21 Score=180.53 Aligned_cols=128 Identities=40% Similarity=0.738 Sum_probs=114.3
Q ss_pred CCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 468 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 468 ~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...+|+|.|++.|+...+.|.|+|++|++|+.++..|.+||||+|++.++......++|+++++|+||+|||+|.|..+.
T Consensus 12 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 91 (142)
T 2chd_A 12 ATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT 91 (142)
T ss_dssp --CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred CCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence 36799999999999999999999999999999999999999999999876555679999999999999999999995466
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeeccc
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 595 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~ 595 (754)
..++....|.|.|||+|.+++ +|||++.|+|.++..+....+|+.|+.
T Consensus 92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~ 140 (142)
T 2chd_A 92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER 140 (142)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence 666656899999999999988 999999999999998888888888763
|
| >2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-21 Score=186.94 Aligned_cols=124 Identities=18% Similarity=0.213 Sum_probs=107.8
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
..+|+|+|++.|+...+.|.|+|++|+||+++|.+|.+||||++++.+.. ....++||+++++|+||+|||+|.|. |+
T Consensus 27 ~~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~-v~ 105 (155)
T 2z0u_A 27 VGATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS-MS 105 (155)
T ss_dssp -CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEE-CC
T ss_pred CCcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEE-cC
Confidence 57899999999999999999999999999999999999999999998732 22358999999999999999999995 77
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCC-CCccceEeec
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRP-HISRDLCLNL 593 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~-~~~~~~~~~L 593 (754)
..++....|+|+|||+|.+++ +|||++.|+|.++.. ......|+.|
T Consensus 106 ~~~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L 153 (155)
T 2z0u_A 106 YPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNL 153 (155)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEE
T ss_pred HHHhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEc
Confidence 777777899999999999998 999999999999953 4455556555
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.4e-21 Score=183.16 Aligned_cols=129 Identities=26% Similarity=0.357 Sum_probs=110.2
Q ss_pred ccccceeEEeeeccccccceeecccccccccc-CCCC------CCCCceEEEEecCCCCcceeeeeeecCCCCCccceeE
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIP-MDSN------GFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEF 683 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~-~d~~------G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF 683 (754)
....|+|.+++.|.+..+.|.|.|++|+||+. ++.+ |.+||||+|++.++. ..+++|+++++|+||+|||+|
T Consensus 9 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~-~~~~kT~v~~~t~nP~wne~f 87 (147)
T 2enp_A 9 KYQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQ-KNSKQTGVKRKTQKPVFEERY 87 (147)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCC-SSCEECCCCCSCSSCCCCBCC
T ss_pred CCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCC-CcceEeecccCCCCCeEeeeE
Confidence 56799999999999999999999999999998 4554 589999999998653 358899999999999999999
Q ss_pred EEEeecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 684 AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 684 ~F~V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
.|.+...++....|.|+|||++.+++|++||.+.|++.... .......|+.|+++..
T Consensus 88 ~f~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~------------~~~~~~~w~~L~~~~~ 144 (147)
T 2enp_A 88 TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVD------------LVKGGHWWKALIPSGP 144 (147)
T ss_dssp EECCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSC------------TTTCCCEEECCBCCCC
T ss_pred EEEeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcC------------CCCCccEEEEeecCCC
Confidence 99998767777899999999999999999999999998642 1223467888887643
|
| >2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=174.90 Aligned_cols=123 Identities=22% Similarity=0.360 Sum_probs=105.2
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.+|+|.|++.|+...+.|.|+|++|+||+.++..+.+||||++++.++.....+++|+++++|+||+|||+|.|..+...
T Consensus 3 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~ 82 (129)
T 2bwq_A 3 LSGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRR 82 (129)
T ss_dssp CCCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGG
T ss_pred eeEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHH
Confidence 68999999999999999999999999999999999999999999988665668999999999999999999999645556
Q ss_pred ccCcceEEEEEeeCCCCC---CccceeeeecCcccCCCCccceEeec
Q psy7848 550 DLSLQSLHILVLDDDKYG---HDFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g---~dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
++....|.|+|||+|.++ +++||++.|+|.++.... ...|++|
T Consensus 83 ~~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L 128 (129)
T 2bwq_A 83 EFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKL 128 (129)
T ss_dssp GGGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEEC
T ss_pred HhcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEEC
Confidence 667789999999999987 599999999999987653 4455544
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.2e-21 Score=179.10 Aligned_cols=126 Identities=25% Similarity=0.375 Sum_probs=105.8
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEE-eecCc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TKITE 691 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~-V~~~d 691 (754)
.|.+-+.+.|....+.|.|.|++|+||+. +.+|.+||||+|++.++... .++||+++++|+||+|||+|.|. +...+
T Consensus 6 ~~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~ 84 (134)
T 2b3r_A 6 HGSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKET 84 (134)
T ss_dssp -CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHH
T ss_pred cccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHH
Confidence 34555666666678999999999999997 78899999999999876533 48999999999999999999999 88777
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
+....|.|+|||++.+++|++||.+.|++... .++..+++||.|.++++
T Consensus 85 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l------------~~~~~~~~W~~L~~~~~ 133 (134)
T 2b3r_A 85 LRQRELQLSVLSAESLRENFFLGGITLPLKDF------------NLSKETVKWYQLTAATY 133 (134)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGS------------CTTSCEEEEEECBC---
T ss_pred hCcCEEEEEEEECCCCCCCcEEEEEEEEhhhc------------cCCCCcceeEECCCccC
Confidence 77899999999999999999999999999864 23557789999988754
|
| >2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.1e-20 Score=177.13 Aligned_cols=124 Identities=34% Similarity=0.557 Sum_probs=109.5
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|.|++.|.+..+.|.|+|++|++|+.++..+.+||||+|++.++.. ..++|+++++|+||+|||+|.|..++.
T Consensus 10 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~~ 87 (141)
T 2d8k_A 10 ENLGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKK--HKLETKVKRKNLNPHWNETFLFEGFPY 87 (141)
T ss_dssp CCCCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCS--SEEECCCCTTCSSCCCCEEEEECSCCH
T ss_pred ceeeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCC--ccEeCceEcCCCCCccccEEEECccCH
Confidence 469999999999999999999999999999999999999999999987543 688999999999999999999964555
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+++....|.|+|||+|.++. +|||++.|+|.++..+.....|++|.
T Consensus 88 ~~~~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 134 (141)
T 2d8k_A 88 EKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134 (141)
T ss_dssp HHHTTSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCE
T ss_pred HHcccCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECc
Confidence 56667899999999999987 99999999999998776566666654
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.1e-21 Score=183.99 Aligned_cols=127 Identities=33% Similarity=0.501 Sum_probs=110.0
Q ss_pred cccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc----------ceeeeeeecCCCCCccce
Q psy7848 612 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----------RKYKTGVKWKTLNPIFNE 681 (754)
Q Consensus 612 ~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k----------~k~KT~v~kkTlNP~wNE 681 (754)
...|+|.+++.|. .+.|.|.|++|+||+++|.+|.+||||+|++.+..+. .++||+++++|+||+|||
T Consensus 4 ~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T 1rh8_A 4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred CcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence 5689999999998 6899999999999999999999999999999865432 368999999999999999
Q ss_pred eEEEE-eecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 682 EFAIE-TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 682 tF~F~-V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
+|.|. +...++....|.|+|||++.+++|++||.+.|++..... +....+||+|.+...
T Consensus 82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~------------~~~~~~W~~L~~~~~ 141 (142)
T 1rh8_A 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSH------------LDNTPRWYPLKEQTE 141 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGG------------GTTCCEEEECBCCCC
T ss_pred EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEecccccc------------CCCCCeEEECCccCC
Confidence 99998 776677788999999999999999999999999986422 234668999987653
|
| >2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.1e-20 Score=179.15 Aligned_cols=113 Identities=29% Similarity=0.491 Sum_probs=101.9
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEE-ee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIE-TK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~-V~ 688 (754)
....|+|.+++.|.+..+.|.|.|++|+||++++.+|.+||||+|++.++..+ .++||+++++|+||+|||+|.|. +.
T Consensus 12 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~ 91 (142)
T 2chd_A 12 ATTLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGIT 91 (142)
T ss_dssp --CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCC
T ss_pred CCccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccC
Confidence 56789999999999999999999999999999999999999999999875543 49999999999999999999999 76
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
..++....|.|+|||++.+++|++||.+.|++...
T Consensus 92 ~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l 126 (142)
T 2chd_A 92 EEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126 (142)
T ss_dssp HHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGC
T ss_pred HHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHc
Confidence 66666689999999999999999999999999864
|
| >1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-20 Score=174.26 Aligned_cols=124 Identities=29% Similarity=0.574 Sum_probs=109.2
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCC-CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIH-GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~-g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
..+|+|.|++.|+...+.|.|+|++|+||+.+|.. +.+||||++++.++.. ..++|+++++|+||+|||+|.|..++
T Consensus 6 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~~v~ 83 (138)
T 1ugk_A 6 SGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGIP 83 (138)
T ss_dssp CCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred CccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCC--ceEecCcCcCCCCCcEeeEEEEcCcC
Confidence 57899999999999999999999999999999985 8999999999987543 78999999999999999999996577
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCcc-ceEeecc
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISR-DLCLNLC 594 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~-~~~~~L~ 594 (754)
..++....|.|+|||+|.++. +|||++.|+|.++...... ..|..|.
T Consensus 84 ~~~~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~ 132 (138)
T 1ugk_A 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII 132 (138)
T ss_dssp STTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred HHHhccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhh
Confidence 777777899999999999987 9999999999999876444 3455554
|
| >2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=175.67 Aligned_cols=125 Identities=26% Similarity=0.437 Sum_probs=108.0
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|+|++.|++..+.|.|+|++|+||+.+|..+ +||||+|++.++.....+++|+++++|+||+|||+|.|. +..
T Consensus 8 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~ 85 (142)
T 2dmg_A 8 SPLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFS-VSL 85 (142)
T ss_dssp CSSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEEC-CCH
T ss_pred CCcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEE-ecH
Confidence 578999999999999999999999999999999889 999999999876555578999999999999999999995 666
Q ss_pred cccCcceEEEEEeeCCCCC--C-ccceeeeecCcccCCCCccceEeecccCCCCCc
Q psy7848 549 TDLSLQSLHILVLDDDKYG--H-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPR 601 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g--~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~ 601 (754)
.++....|.|+|||+|.++ + +|||++.|+|.++...... ..|++|.+
T Consensus 86 ~~l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~------~~W~~L~~ 135 (142)
T 2dmg_A 86 PEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGW------TQWYDLTE 135 (142)
T ss_dssp HHHHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCB------CCBCCCBC
T ss_pred HHhCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccc------cceeeccC
Confidence 6666679999999999876 4 6999999999998765433 44555543
|
| >3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=179.71 Aligned_cols=125 Identities=27% Similarity=0.453 Sum_probs=111.0
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
+.+|+|.|++.|++..+.|.|+|++|+||+.++ ..+.+||||++++.++.....+++|+++++|+||+|||+|.|. +.
T Consensus 7 ~~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~ 85 (148)
T 3fdw_A 7 FVTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYE-IP 85 (148)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEE-CC
T ss_pred ccceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEE-eC
Confidence 679999999999999999999999999999998 6799999999999987655678999999999999999999995 77
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
..++....|.|.|||+|.+++ +|||++.|+|.++..+.....|++|.
T Consensus 86 ~~~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 133 (148)
T 3fdw_A 86 ESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLH 133 (148)
T ss_dssp STTGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECB
T ss_pred hhHhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECc
Confidence 777777899999999999988 99999999999987665555555554
|
| >1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-20 Score=175.75 Aligned_cols=126 Identities=21% Similarity=0.353 Sum_probs=109.7
Q ss_pred CCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 468 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 468 ~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...+|+|.|++.|++..+.|.|+|++|++|+.++..+.+||||+|++.++.....+++|+++++|+||+|||+|.|..+.
T Consensus 4 ~~~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~ 83 (141)
T 1v27_A 4 GSSGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 83 (141)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCC
T ss_pred CCcccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCC
Confidence 35789999999999999999999999999999999999999999999876655678999999999999999999996456
Q ss_pred ccccCcceEEEEEeeCCCCC---CccceeeeecCcccCCCCccceEeecc
Q psy7848 548 ETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g---~dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
..++....|.|+|||+|.++ ++|||++.|+|.++.... ...|++|.
T Consensus 84 ~~~~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~ 132 (141)
T 1v27_A 84 RREFRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ 132 (141)
T ss_dssp TTGGGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECB
T ss_pred HHHhcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECc
Confidence 66777789999999999987 599999999999987643 44555553
|
| >1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-20 Score=176.41 Aligned_cols=123 Identities=33% Similarity=0.533 Sum_probs=109.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|.|++.|+...+.|.|+|++|+||+.+|..+.+||||+|++.++.. ..++|+++++|+||+|||+|.|. +..
T Consensus 26 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~--~~~kT~v~~~t~nP~wne~f~f~-v~~ 102 (152)
T 1rsy_A 26 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFK-VPY 102 (152)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEEC-CCH
T ss_pred CCceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCC--ceEeccccCCCCCCcCcccEEEe-ecH
Confidence 579999999999999999999999999999999999999999999987543 67899999999999999999994 666
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.++....|.|+|||+|.+++ +|||++.|+|.++..+.....|+.|.
T Consensus 103 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 149 (152)
T 1rsy_A 103 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 149 (152)
T ss_dssp HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred HHcCCCEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECC
Confidence 66667899999999999987 99999999999998776666676664
|
| >3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=4.6e-20 Score=175.13 Aligned_cols=123 Identities=33% Similarity=0.533 Sum_probs=110.7
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|.|++.|+...+.|.|+|++|++|+.++..+.+||||+|++.++.. .+++|+++++|+||+|||+|.|. +..
T Consensus 18 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~-v~~ 94 (143)
T 3f04_A 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFK-VPY 94 (143)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCS--CCEECCCCCSCSSCEEEEEEEEC-CCH
T ss_pred cCeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCC--ccEECccCcCCCCCcCcCeEEEe-ecH
Confidence 579999999999999999999999999999999889999999999987554 58899999999999999999994 666
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.++....|.|+|||+|.++. +|||++.|+|.++..+.....|++|.
T Consensus 95 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 141 (143)
T 3f04_A 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECB
T ss_pred hhcCCCEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECc
Confidence 66777899999999999987 99999999999998877777777664
|
| >1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.9e-19 Score=170.53 Aligned_cols=121 Identities=19% Similarity=0.245 Sum_probs=106.3
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|+|++.|+...+.|.|+|++|+ .+|..|.+||||+|++.++.. ...++|+++++|+||+|||+|.|. +..
T Consensus 10 ~~~G~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~-~~~~kT~v~~~tlnP~wnE~f~f~-v~~ 84 (138)
T 1wfm_A 10 NQAPKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVLP-LAE 84 (138)
T ss_dssp SSCCEEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEEE-CCT
T ss_pred CcceEEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCC-cccEecccCcCCCCCcCCceEEEE-ecH
Confidence 468999999999999999999999999 367889999999999986422 357899999999999999999995 777
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.++....|+|.|||+|.+++ +|||++.|+|.++........|..|.
T Consensus 85 ~~l~~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~ 131 (138)
T 1wfm_A 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131 (138)
T ss_dssp TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECC
T ss_pred HHcCCCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCc
Confidence 77777899999999999988 99999999999997666666777665
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.82 E-value=8e-20 Score=174.94 Aligned_cols=124 Identities=33% Similarity=0.566 Sum_probs=105.8
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
....|+|.+++.|. .+.|.|.|++|+||++++.+|.+||||+|++.++... .++||+++++|+||+|||+|.|.+..
T Consensus 16 ~~~~G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~ 93 (149)
T 1a25_A 16 MERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 93 (149)
T ss_dssp -CTTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCS
T ss_pred CCcceEEEEEEEec--CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEecc
Confidence 45689999999994 5789999999999999999999999999999875443 48999999999999999999999976
Q ss_pred CccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
.++ ...|.|+|||++.+++|++||.+.|++.. +... ..++||.|.+.
T Consensus 94 ~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~----------l~~~---~~~~W~~L~~~ 140 (149)
T 1a25_A 94 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISE----------LQKA---GVDGWFKLLSQ 140 (149)
T ss_dssp GGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHH----------HTTC---CEEEEEECBCH
T ss_pred ccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHH----------hCcC---ccCCeEEccCC
Confidence 554 36899999999999999999999999873 2322 37788888764
|
| >2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=173.24 Aligned_cols=123 Identities=24% Similarity=0.353 Sum_probs=105.5
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCC-CCC------CCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeE
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAM-DIH------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKL 541 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~-d~~------g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f 541 (754)
..+|+|.|++.|++..+.|.|+|++|+||+.. |.+ +.+||||+|++.++.. .+++|+++++++||+|||+|
T Consensus 10 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~--~~~kT~v~~~t~nP~wne~f 87 (147)
T 2enp_A 10 YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQK--NSKQTGVKRKTQKPVFEERY 87 (147)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCS--SCEECCCCCSCSSCCCCBCC
T ss_pred CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCC--cceEeecccCCCCCeEeeeE
Confidence 57999999999999999999999999999984 544 5899999999987543 57899999999999999999
Q ss_pred EEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 542 TFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 542 ~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.|. +...++....|.|.|||+|.+++ +|||++.|+|.++........|..|.
T Consensus 88 ~f~-v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~ 140 (147)
T 2enp_A 88 TFE-IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALI 140 (147)
T ss_dssp EEC-CCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCB
T ss_pred EEE-eChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEee
Confidence 995 66666666799999999999987 99999999999997765554555543
|
| >3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-20 Score=174.21 Aligned_cols=111 Identities=32% Similarity=0.505 Sum_probs=101.1
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|++.|++..+.|.|+|++|+||+.+|..|.+||||++++.++.....+++|+++.+|+||+|||+|.|. +...+
T Consensus 2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~-v~~~~ 80 (138)
T 3n5a_A 2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFD-IPTEK 80 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEE-CCGGG
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEE-CChhh
Confidence 79999999999999999999999999999999999999999999875544568999999999999999999995 77777
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccC
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~ 582 (754)
+....|.|+|||+|.++. +|||++.|+|.++.
T Consensus 81 l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~ 113 (138)
T 3n5a_A 81 LRETTIIITVMDKDKLSRNDVIGKIYLSWKSGP 113 (138)
T ss_dssp GGGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred cCceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence 777899999999999987 99999999999753
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.1e-20 Score=180.35 Aligned_cols=108 Identities=22% Similarity=0.358 Sum_probs=93.8
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCC-CCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDS-NGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~-~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~ 688 (754)
....|+|.+++.| ..+.|.|.|++|+||+++|. +|.+||||+|++.++... .++||+++++|+||+|||+|.|.+.
T Consensus 15 ~~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~ 92 (171)
T 2q3x_A 15 TPAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES 92 (171)
T ss_dssp --CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSC
T ss_pred CCCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEec
Confidence 3567999999999 67899999999999999995 799999999999875433 3889999999999999999999985
Q ss_pred cCccCCCeEEEEEE-EccCCCCCceeEEEEEecCCC
Q psy7848 689 ITELSKQTLVITVW-DKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 689 ~~dL~~~~L~ItV~-D~d~~~~ddfLG~v~L~l~s~ 723 (754)
. ....|.|+|| |+|.+++|++||.+.|++...
T Consensus 93 ~---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l 125 (171)
T 2q3x_A 93 P---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEEL 125 (171)
T ss_dssp C---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGS
T ss_pred C---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHc
Confidence 3 3589999999 999999999999999999864
|
| >1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.80 E-value=5.1e-20 Score=174.41 Aligned_cols=124 Identities=30% Similarity=0.455 Sum_probs=106.1
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC---------ceEEEeeeecCCCCCeece
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT---------SHRLRTKTCLRTINPEFHE 539 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~---------~~~~rTkvi~~TlNP~WnE 539 (754)
..+|+|.|++.|+ .+.|.|+|++|+||+.+|..|.+||||+|++.+.... ..+++|+++++|+||+|||
T Consensus 4 ~~~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T 1rh8_A 4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred CcceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCC
Confidence 5799999999998 7899999999999999999999999999999864321 2357899999999999999
Q ss_pred eEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 540 KLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 540 ~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+|.|..+..+++....|.|+|||+|.++. +|||++.|+|.++........|++|.
T Consensus 82 ~f~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 137 (142)
T 1rh8_A 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred EEEECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECC
Confidence 99995466666677899999999999988 99999999999987654555565554
|
| >2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-19 Score=168.52 Aligned_cols=123 Identities=24% Similarity=0.344 Sum_probs=105.4
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
.|.+-+.+.|+...+.|.|+|++|+||+. +..+.+||||+|++.++.....+++|+++++|+||+|||+|.|..+...+
T Consensus 6 ~~~~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~ 84 (134)
T 2b3r_A 6 HGSGAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKET 84 (134)
T ss_dssp -CCCEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHH
T ss_pred cccEEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHH
Confidence 45566777777789999999999999997 77899999999999886555678999999999999999999994366667
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
+....|.|+|||+|.+++ +|||++.|+|.++..+.....|++|.
T Consensus 85 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~ 129 (134)
T 2b3r_A 85 LRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129 (134)
T ss_dssp HTTCEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECB
T ss_pred hCcCEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECC
Confidence 777899999999999987 99999999999998776666666664
|
| >1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=7.8e-19 Score=169.85 Aligned_cols=112 Identities=31% Similarity=0.476 Sum_probs=101.3
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|.|+|.|++..+.|.|+|++|+||+.+|..|.+||||+|++.++.....+++|+++.+|+||+|||+|.|. +..
T Consensus 9 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~ 87 (159)
T 1tjx_A 9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPF 87 (159)
T ss_dssp GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCG
T ss_pred CcCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEE-cCH
Confidence 4699999999999999999999999999999999999999999999865433468899999999999999999995 776
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
.++....|.|.|||+|.++. +|||++.|+|..+
T Consensus 88 ~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~ 121 (159)
T 1tjx_A 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121 (159)
T ss_dssp GGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCC
T ss_pred HHhCCcEEEEEEEECCCCCCCceEEEEEECCCCC
Confidence 77777899999999999987 9999999999865
|
| >2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A | Back alignment and structure |
|---|
Probab=99.79 E-value=1.6e-18 Score=169.04 Aligned_cols=114 Identities=32% Similarity=0.458 Sum_probs=102.0
Q ss_pred CCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 468 DTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 468 ~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...+|+|.|++.|....+.|.|+|++|+||+.+|.+|.+||||+|++.++.....+++|+++++|+||+|||+|.|. +.
T Consensus 20 ~~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~ 98 (166)
T 2cm5_A 20 IEERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IK 98 (166)
T ss_dssp CCCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CC
T ss_pred cCccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEE-cc
Confidence 36799999999999999999999999999999999999999999999875544578999999999999999999995 66
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccC
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~ 582 (754)
..++....|.|.|||+|.++. +|||++.|+|.++.
T Consensus 99 ~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~ 134 (166)
T 2cm5_A 99 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG 134 (166)
T ss_dssp GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred hHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCC
Confidence 666777899999999999987 99999999999763
|
| >3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-19 Score=171.27 Aligned_cols=125 Identities=24% Similarity=0.350 Sum_probs=104.0
Q ss_pred CCCceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeee
Q psy7848 467 ADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546 (754)
Q Consensus 467 ~~~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I 546 (754)
.....|+|.|+|.|+...+.|.|+|++|+||+.+| .+.+||||+|++.++.....+++|+++.+|+||+|||+|.|. +
T Consensus 9 ~~~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v 86 (153)
T 3fbk_A 9 SHKVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFP-V 86 (153)
T ss_dssp ----CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEE-C
T ss_pred ccCCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEe-c
Confidence 33679999999999999999999999999999999 699999999999886655678999999999999999999995 5
Q ss_pred eccccCcceEEEEEeeCCCCC--CccceeeeecCcccCC-CCccceEeecc
Q psy7848 547 SETDLSLQSLHILVLDDDKYG--HDFLGEARFPLNRLRP-HISRDLCLNLC 594 (754)
Q Consensus 547 ~~~el~~~~L~~sV~D~d~~g--~dfLGev~I~L~~L~~-~~~~~~~~~L~ 594 (754)
...++. ..|.|+|||+|.++ ++|||++.|+|.+|.. +.....|+.|.
T Consensus 87 ~~~~~~-~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~ 136 (153)
T 3fbk_A 87 QEEDDQ-KRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLL 136 (153)
T ss_dssp CGGGTT-SEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECB
T ss_pred ccHHhC-CEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECC
Confidence 555565 45999999999975 4899999999999974 44555555553
|
| >1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.2e-19 Score=172.49 Aligned_cols=111 Identities=28% Similarity=0.407 Sum_probs=94.1
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|.|++.|++..+.|.|+|++|+||+.+|..+.+||||+|++.++.....+++|+++++|+||+|||+|.|. +..
T Consensus 14 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~ 92 (153)
T 1w15_A 14 SGRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFD-IPC 92 (153)
T ss_dssp --CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEE-CCS
T ss_pred ccccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEE-CCH
Confidence 5799999999999999999999999999999999999999999999875443347899999999999999999995 777
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
.++....|.|.|||+|.++. +|||++.|+|.+
T Consensus 93 ~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 93 ESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 125 (153)
T ss_dssp SSSTTEEEEEEEEECCTTSCCEEEEEEEESTTC
T ss_pred HHhCceEEEEEEEeCCCCCCCcEEEEEEECCCC
Confidence 77777899999999999987 999999999987
|
| >2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=8.5e-19 Score=184.89 Aligned_cols=123 Identities=35% Similarity=0.623 Sum_probs=108.8
Q ss_pred cccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 612 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 612 ~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
...|+|.+++.|.+..+.|.|.|++|+||+++|.+|.+||||+|++.++. ..+++|+++++|+||+|||+|.|.+...+
T Consensus 3 ~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~-~~~~~T~~~~~~~nP~wne~f~f~v~~~~ 81 (284)
T 2r83_A 3 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYSE 81 (284)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCT-TSCEECCCCCSCSSCEEEEEEEECCCGGG
T ss_pred cceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCC-CceEeCCcccCCCCCeeCceEEEEechHH
Confidence 46899999999999999999999999999999999999999999997653 34789999999999999999999998878
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCCC--CchhhhHHhhhc
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNSK--GDRLRHWVDMMK 735 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~--ge~~~hW~~ll~ 735 (754)
+....|.|+|||++.++.|++||.+.|++... +....+|++|..
T Consensus 82 ~~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~ 127 (284)
T 2r83_A 82 LAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 127 (284)
T ss_dssp CTTCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred hCcCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeec
Confidence 88899999999999999999999999999873 334455665543
|
| >1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=165.20 Aligned_cols=120 Identities=32% Similarity=0.471 Sum_probs=102.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|.+++.| ..+.|.|+|++|++|+.+|..+.+||||+|++.++.....+++|+++++|+||+|||+|.|. +..
T Consensus 17 ~~~G~l~~~l~~--~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~ 93 (149)
T 1a25_A 17 ERRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKE 93 (149)
T ss_dssp CTTCEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCS
T ss_pred CcceEEEEEEEe--cCCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEE-ecc
Confidence 568999999999 46899999999999999999999999999999876555678999999999999999999995 544
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
.++ ...|.|+|||+|.++. +|||++.|+|.+|... ....|+.|
T Consensus 94 ~~~-~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L 137 (149)
T 1a25_A 94 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKL 137 (149)
T ss_dssp GGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEEC
T ss_pred ccC-CCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEc
Confidence 444 3689999999999987 9999999999999765 34445544
|
| >2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.2e-18 Score=169.29 Aligned_cols=120 Identities=23% Similarity=0.319 Sum_probs=101.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCC-CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDI-HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~-~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
..+|+|.|++.| ..+.|.|+|++|+||+.+|. .+.+||||+|++.++.....+++|+++++|+||+|||+|.|. +.
T Consensus 16 ~~~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~ 92 (171)
T 2q3x_A 16 PAMGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFD-ES 92 (171)
T ss_dssp -CCCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECS-SC
T ss_pred CCccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEE-ec
Confidence 578999999999 68999999999999999995 799999999999875433458899999999999999999995 43
Q ss_pred ccccCcceEEEEEe-eCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 548 ETDLSLQSLHILVL-DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 548 ~~el~~~~L~~sV~-D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
. ....|.|.|| |+|.++. +|||++.|+|.++..+.....|+.|.
T Consensus 93 ~---~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~ 138 (171)
T 2q3x_A 93 P---QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLF 138 (171)
T ss_dssp C---TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECB
T ss_pred C---CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECC
Confidence 2 3589999999 9999987 99999999999998766666666664
|
| >1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-18 Score=184.16 Aligned_cols=124 Identities=35% Similarity=0.604 Sum_probs=108.6
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|.++|.|.+..+.|.|.|++|+||+++|.+|.+||||+|++.++ +..+++|+++++|+||+|||+|.|.+...
T Consensus 3 ~~~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~-~~~~~kT~v~~~t~nP~wne~f~f~v~~~ 81 (296)
T 1dqv_A 3 GAPCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKTLNPIFNETFQFSVPLA 81 (296)
T ss_dssp CCSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTS-TTSCEECCCCCSCSSCEEEEEEEEECCGG
T ss_pred CCeeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcC-CCeeEeCCccCCCCCCcEeeEEEEEecHH
Confidence 35789999999999999999999999999999999999999999999765 34688999999999999999999999888
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEe-c---CCCCchhhhHHhhhc
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELC-C---NSKGDRLRHWVDMMK 735 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~-l---~s~ge~~~hW~~ll~ 735 (754)
++....|.|+|||+|.+++|++||.+.|+ + ...+....+|++|..
T Consensus 82 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~ 130 (296)
T 1dqv_A 82 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE 130 (296)
T ss_dssp GGSSCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred HhcCCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeecccc
Confidence 88888999999999999999999999995 2 223445566776653
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-17 Score=157.20 Aligned_cols=128 Identities=24% Similarity=0.325 Sum_probs=103.5
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc-CcceEEEEEe
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL-SLQSLHILVL 561 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el-~~~~L~~sV~ 561 (754)
..+.|.|+|++|++|+.++. +.+||||++++.+ .+++|+++++++||+|||+|.|. +...++ ....|.|.||
T Consensus 5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~-v~~~~~~~~~~l~i~V~ 77 (140)
T 2dmh_A 5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKD-----EKKKTKKVDNELNPVWNEILEFD-LRGIPLDFSSSLGIIVK 77 (140)
T ss_dssp BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSS-----CEEECCCCCSCSSCEEEEEEEEE-CSSCCCCTTCEEEEEEE
T ss_pred CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECC-----EeEEeeeecCCCCCccCcEEEEE-ecccccCCCCEEEEEEE
Confidence 45789999999999999998 9999999999964 57999999999999999999995 443322 3589999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
|+|.++. +|||++.|+|.+|..+.....|+.+.. +... ......|+|+|++.|.|.
T Consensus 78 d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~---l~~~------~~~~~~G~l~l~~~~~p~ 134 (140)
T 2dmh_A 78 DFETIGQNKLIGTATVALKDLTGDQSRSLPYKLIS---LLNE------KGQDTGATIDLVIGYDPP 134 (140)
T ss_dssp ETTCSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEE---EECT------TCCEEEEEEEEEEEECCC
T ss_pred ECCCCCCCceEEEEEEEHHHhccCCCceeEEeeee---ccCC------CCCCCCCEEEEEEEEECC
Confidence 9999987 999999999999987766667766321 1111 012356999999999875
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-18 Score=162.14 Aligned_cols=109 Identities=28% Similarity=0.372 Sum_probs=95.7
Q ss_pred eeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEE
Q psy7848 620 TLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVI 699 (754)
Q Consensus 620 sL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~I 699 (754)
++.|.+..+.|.|.|++|+||++++.+|.+||||++++. ..+++|+++++|+||+|||+|.|.+.. . ...|.|
T Consensus 5 s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~----~~~~kT~~~~~t~nP~wne~f~f~~~~--~-~~~l~i 77 (133)
T 2ep6_A 5 SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKNLNPEWNKVFTFPIKD--I-HDVLEV 77 (133)
T ss_dssp CCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEET----TEEEECCCCSSCSSCCCCEEEEEEESC--T-TCEEEE
T ss_pred cccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEEC----CEEEEeeeecCCCCCccccEEEEEecC--C-CCEEEE
Confidence 467888889999999999999999999999999999994 347899999999999999999999963 2 478999
Q ss_pred EEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhc
Q psy7848 700 TVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMK 735 (754)
Q Consensus 700 tV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~ 735 (754)
+|||++.+++|++||.+.|++.....+..+|+.|..
T Consensus 78 ~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~w~~L~~ 113 (133)
T 2ep6_A 78 TVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKN 113 (133)
T ss_dssp EEEEEETTEEEEECCBCEEEGGGCCSSCCEECCCBC
T ss_pred EEEECCCCCCCCeeEEEEEEHHHccCCCceEEEeec
Confidence 999999999999999999999986655567777664
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.8e-17 Score=157.60 Aligned_cols=134 Identities=24% Similarity=0.394 Sum_probs=96.2
Q ss_pred CcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 482 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 482 ~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
...+.|.|+|++|++|+.+|..+.+||||++++.+... ....++|+++.+|+||+|||+|.|. +... ...|.|+|
T Consensus 17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~~---~~~l~~~V 92 (153)
T 3b7y_A 17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFR-VHPQ---QHRLLFEV 92 (153)
T ss_dssp TTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEE-ECTT---TCEEEEEE
T ss_pred CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEE-ecCC---CCEEEEEE
Confidence 34578999999999999999889999999999985321 1368899999999999999999995 4432 47899999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCCCccceEeec-ccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL-CKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L-~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
||+|.+++ +|||++.|+|.++........ ..+ ..|++|.... ......|+|+|++.|.|
T Consensus 93 ~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~-~~~~~~w~~L~~~~-----~~~~~~G~i~l~l~~~P 153 (153)
T 3b7y_A 93 FDENRLTRDDFLGQVDVPLYPLPTENPRLE-RPYTFKDFVLHPRS-----HKSRVKGYLRLKMTYLP 153 (153)
T ss_dssp EECCSSSCCEEEEEEEEECCSCCBCCTTSC-CCCCCEEEECBCSS-----TTCCCCSEEEEEEEECC
T ss_pred EECCCCcCCCeeEEEEEEHHHcccCCCccc-cccccccccccccc-----CCCCcceEEEEEEEEeC
Confidence 99999987 999999999999976644210 011 1344443221 11356899999999976
|
| >2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.2e-18 Score=158.48 Aligned_cols=112 Identities=20% Similarity=0.200 Sum_probs=93.7
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCcc-CCCeEEEEEEEcc
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITEL-SKQTLVITVWDKD 705 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL-~~~~L~ItV~D~d 705 (754)
.+.|.|.|++|+||+.++. |.+||||++++. ..++||+++++++||+|||+|.|.+...++ ....|.|+|||++
T Consensus 6 ~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~----~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d 80 (140)
T 2dmh_A 6 SGMLRVIVESASNIPKTKF-GKPDPIVSVIFK----DEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE 80 (140)
T ss_dssp CCEEEEEEEEEESCCCCSS-SCCCEEEEEECS----SCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred CcEEEEEEEEeeCCCCCCC-CCCCeEEEEEEC----CEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence 4789999999999999998 999999999994 347999999999999999999999875444 3589999999999
Q ss_pred CCCCCceeEEEEEecCCC--CchhhhHHh---hhcCCCcceee
Q psy7848 706 YGKSNDYLGCLELCCNSK--GDRLRHWVD---MMKYPDHKHEG 743 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s~--ge~~~hW~~---ll~~P~~~ie~ 743 (754)
.++.|++||.+.|++... +....+|++ |+...+....+
T Consensus 81 ~~~~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G 123 (140)
T 2dmh_A 81 TIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGA 123 (140)
T ss_dssp CSSSCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEE
T ss_pred CCCCCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCC
Confidence 999999999999999873 445577877 66554443333
|
| >2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=156.75 Aligned_cols=126 Identities=31% Similarity=0.483 Sum_probs=102.2
Q ss_pred EEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEE
Q psy7848 478 VTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLH 557 (754)
Q Consensus 478 l~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~ 557 (754)
+.|....+.|.|+|++|++|+.+|..|.+||||++++.+ ..++|+++++++||+|||+|.|. +.. . ...|.
T Consensus 6 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~t~nP~wne~f~f~-~~~--~-~~~l~ 76 (133)
T 2ep6_A 6 SGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTFP-IKD--I-HDVLE 76 (133)
T ss_dssp CCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-----EEEECCCCSSCSSCCCCEEEEEE-ESC--T-TCEEE
T ss_pred ccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC-----EEEEeeeecCCCCCccccEEEEE-ecC--C-CCEEE
Confidence 456677899999999999999999999999999999964 57899999999999999999995 332 2 37899
Q ss_pred EEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 558 ILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 558 ~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
|+|||+|.++. +|||++.|+|.++..+. . .|++|..... .....|+|+|.+.|..
T Consensus 77 i~V~d~d~~~~~~~lG~~~i~l~~l~~~~--~------~w~~L~~~~~-----~~~~~G~i~l~i~~~~ 132 (133)
T 2ep6_A 77 VTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--P------NCYVLKNKDL-----EQAFKGVIYLEMDLIY 132 (133)
T ss_dssp EEEEEEETTEEEEECCBCEEEGGGCCSSC--C------EECCCBCSCT-----TSCCSSEEEEEEEEEE
T ss_pred EEEEECCCCCCCCeeEEEEEEHHHccCCC--c------eEEEeecCCC-----CCccceEEEEEEEEEe
Confidence 99999999987 99999999999996542 2 3444433211 1357899999998753
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-17 Score=162.42 Aligned_cols=108 Identities=20% Similarity=0.277 Sum_probs=90.0
Q ss_pred ccccceeeccccccccccCCC----------CCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCC
Q psy7848 625 TKKRALIVNLIKCTNLIPMDS----------NGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSK 694 (754)
Q Consensus 625 p~~g~L~V~V~~A~nL~~~d~----------~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~ 694 (754)
...|.|.|.|++|+||+++|. .|.+||||+|++. +....||+++++|+||+|||+|.|.+.. .
T Consensus 26 ~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~---~~~~~kT~v~~ktlnP~WNE~F~f~v~~----~ 98 (157)
T 2fk9_A 26 KFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVD---QVRVGQTSTKQKTNKPTYNEEFCANVTD----G 98 (157)
T ss_dssp CEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEET---TEEEEECCCCSSCSSCEEEEEEEEEEEE----E
T ss_pred cCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEEC---CEeeEEeeecCCCCCCccCcEEEEEcCC----C
Confidence 445899999999999999883 3779999999993 2235799999999999999999999863 3
Q ss_pred CeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcC--CCcceeeEEeecC
Q psy7848 695 QTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKY--PDHKHEGIHNLSI 749 (754)
Q Consensus 695 ~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~--P~~~ie~Wh~L~~ 749 (754)
..|.|+|||+|.++.|+|||.+.|++.. +... ++..++.|+.|.+
T Consensus 99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~----------l~~~~~~~~~~~~W~~L~~ 145 (157)
T 2fk9_A 99 GHLELAVFHETPLGYDHFVANCTLQFQE----------LLRTTGASDTFEGWVDLEP 145 (157)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHH----------HHHHHTTCSEEEEEEECBS
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHH----------hhcccCCCCcccEEEECCC
Confidence 6899999999999999999999999863 3433 5567788888864
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.3e-17 Score=162.46 Aligned_cols=136 Identities=24% Similarity=0.381 Sum_probs=95.9
Q ss_pred CcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 482 STTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 482 ~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
...+.|.|+|++|++|+.++..+.+||||+|++.+... ...+++|+++++++||+|||.|.|. +... ...|.|.|
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~-v~~~---~~~L~~~V 80 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFR-VLPQ---RHRILFEV 80 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEE-ECTT---TCEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEE-EcCC---CCEEEEEE
Confidence 45689999999999999999999999999999985322 1257899999999999999999985 4322 37899999
Q ss_pred eeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 561 LDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 561 ~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
||+|.++. +|||++.|+|.+|..............||+|..... .....|+|+|++.|.|.
T Consensus 81 ~d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~-----~~~~~G~l~l~l~~~p~ 142 (176)
T 3m7f_B 81 FDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSH-----KSRVKGYLRLKMTYLPK 142 (176)
T ss_dssp EECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSST-----TCCCCSEEEEEEEECC-
T ss_pred EECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCC-----CCccCEEEEEEEEEEeC
Confidence 99999987 999999999999976533310000113444433211 13468999999999987
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=153.03 Aligned_cols=121 Identities=20% Similarity=0.319 Sum_probs=99.6
Q ss_pred CCEEEEEEEEecCCCCC---CCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 484 TCSLHVTLHRAKGLRAM---DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~---d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
.+.|.|+|++|++|+.+ |..|.+||||++++.+.. ..+++|+++++|+||+|||+|.|. +... ....|.|.|
T Consensus 2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~--~~~~kT~v~~~t~nP~wne~f~f~-v~~~--~~~~l~i~V 76 (126)
T 1rlw_A 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP--DSRKRTRHFNNDINPVWNETFEFI-LDPN--QENVLEITL 76 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST--TCCEECCCCTTCSSCEEEEEEEEE-ECTT--SCCEEEEEE
T ss_pred CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC--CceEEccccCCCCCCcccceEEEE-ecCC--CCCEEEEEE
Confidence 47899999999999985 566899999999997643 268899999999999999999995 4322 357899999
Q ss_pred eeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 561 LDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 561 ~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
||+|.+++++||++.|+|.+|..+.....|++|.. ...|.|+|.+...|
T Consensus 77 ~d~d~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~----------------~~~g~i~~~le~~~ 125 (126)
T 1rlw_A 77 MDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------------VTEMVLEMSLEVAS 125 (126)
T ss_dssp EECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT----------------TEEEEEEEEEECCC
T ss_pred EECCCCCCceeEEEEEEHHHccCCCcEEEEEEcCC----------------CceEEEEEEEEeCC
Confidence 99999877999999999999988777777777742 35678888776554
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-17 Score=156.68 Aligned_cols=106 Identities=18% Similarity=0.270 Sum_probs=88.0
Q ss_pred ccceeeccccccccccCCCCCC-----------CCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCC
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGF-----------SDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQ 695 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~-----------sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~ 695 (754)
.+.|.|.|++|+||+++|.+|. +||||+|++. +....+|.++++|+||+|||+|.|.+... .
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~---~~~~~~T~~~~~t~nP~WnE~f~f~v~~~----~ 77 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPAWHDEFVTDVCNG----R 77 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET---TEEEEECCCCSSCSSCEEEEEEEEEEEEE----C
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEEC---CeEeeeeeEECCCcCCccCCEEEEEecCC----C
Confidence 4789999999999999885443 9999999993 23367999999999999999999998632 7
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 696 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 696 ~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
.|.|+|||+|.+++|++||.+.|++. ++...++..++.|+.|.+
T Consensus 78 ~L~~~V~d~d~~~~dd~iG~~~i~l~----------~l~~~~~~~~~~w~~L~~ 121 (136)
T 1gmi_A 78 KIELAVFHDAPIGYDDFVANCTIQFE----------ELLQNGSRHFEDWIDLEP 121 (136)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHH----------HHTSTTCSEEEEEEECBS
T ss_pred EEEEEEEeCCCCCCCCEEEEEEEEHH----------HhcccCCCCccEEEEcCC
Confidence 89999999999999999999999986 344445555677887765
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=2.4e-17 Score=157.17 Aligned_cols=101 Identities=23% Similarity=0.456 Sum_probs=88.7
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
.+.|.|.|++|+||+++|.+|.+||||++++ +..+++|+++++|+||.|||+|.|.+... ...|.|+|||++.
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~----~~~~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~d~d~ 88 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQV----GKTKKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDEDD 88 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE----TTEEEECCCCCSCSSCEEEEEEEEEECST---TCEEEEEEEECCC
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEE----CCEEEECCccCCCCCCCcccEEEEEecCC---CCEEEEEEEECCC
Confidence 4899999999999999999999999999999 44688999999999999999999998643 3789999999998
Q ss_pred C-----------CCCceeEEEEEecCCCCchhhhHHhhh
Q psy7848 707 G-----------KSNDYLGCLELCCNSKGDRLRHWVDMM 734 (754)
Q Consensus 707 ~-----------~~ddfLG~v~L~l~s~ge~~~hW~~ll 734 (754)
+ +.|+|||.+.|++........+|+.|.
T Consensus 89 ~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~~~~~w~~L~ 127 (148)
T 3kwu_A 89 DIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLD 127 (148)
T ss_dssp SHHHHHHTTTSSCSSEEEEEEEEEGGGCCSEEEEEEECB
T ss_pred CccccccccccCCCCccEEEEEEEHHHCcCCCCEEEEcc
Confidence 6 789999999999997755556666655
|
| >3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.7e-16 Score=151.31 Aligned_cols=119 Identities=29% Similarity=0.469 Sum_probs=96.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.+.|.|+|++|++|+.+|..|.+||||++++. ...++|+++.+|+||+|||+|.|. +... ...|.|.|||+
T Consensus 16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~-----~~~~kT~~~~~t~nP~Wne~f~f~-v~~~---~~~l~~~v~d~ 86 (148)
T 3kwu_A 16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVG-----KTKKRTKTIYGNLNPVWEENFHFE-CHNS---SDRIKVRVLDE 86 (148)
T ss_dssp CEEEEEEEEEEESCCCCSTTSCCCEEEEEEET-----TEEEECCCCCSCSSCEEEEEEEEE-ECST---TCEEEEEEEEC
T ss_pred ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEEC-----CEEEECCccCCCCCCCcccEEEEE-ecCC---CCEEEEEEEEC
Confidence 58899999999999999999999999999993 378899999999999999999995 4322 36899999999
Q ss_pred CCC-----------CC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 564 DKY-----------GH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 564 d~~-----------g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
|.+ +. +|||++.|+|.++.. ....|++|.. .. ......|+|+|++.|.
T Consensus 87 d~~~~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~~~~w~~L~~------~~-----~~~~~~G~i~l~l~~e 146 (148)
T 3kwu_A 87 DDDIKSRVKQRFKRESDDFLGQTIIEVRTLSG--EMDVWYNLDK------RT-----DKSAVSGAIRLHISVE 146 (148)
T ss_dssp CCSHHHHHHTTTSSCSSEEEEEEEEEGGGCCS--EEEEEEECBC------SS-----TTCCCCCEEEEEEEEE
T ss_pred CCCccccccccccCCCCccEEEEEEEHHHCcC--CCCEEEEccc------CC-----CCCCCceEEEEEEEEE
Confidence 985 55 999999999999832 3445555542 11 1134679999999885
|
| >1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.5e-17 Score=150.78 Aligned_cols=102 Identities=21% Similarity=0.348 Sum_probs=84.0
Q ss_pred cceeeccccccccccC---CCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPM---DSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~---d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
+.|.|.|++|+||+.+ +.+|.+||||++++.+.. ..++||+++++|+||+|||+|.|.+... ....|.|+|||+
T Consensus 3 ~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~-~~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~ 79 (126)
T 1rlw_A 3 HKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP-DSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLMDA 79 (126)
T ss_dssp EEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTST-TCCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEEEEC
T ss_pred cEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCC-CceEEccccCCCCCCcccceEEEEecCC--CCCEEEEEEEEC
Confidence 6899999999999985 567899999999996532 3589999999999999999999998533 357899999999
Q ss_pred cCCCCCceeEEEEEecCCC--CchhhhHHhh
Q psy7848 705 DYGKSNDYLGCLELCCNSK--GDRLRHWVDM 733 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s~--ge~~~hW~~l 733 (754)
+.++ |++||.+.|++... +....+|++|
T Consensus 80 d~~~-~~~iG~~~i~l~~l~~~~~~~~~~~L 109 (126)
T 1rlw_A 80 NYVM-DETLGTATFTVSSMKVGEKKEVPFIF 109 (126)
T ss_dssp CSSC-CEEEEEEEEEGGGSCTTCEEEEEEEE
T ss_pred CCCC-CceeEEEEEEHHHccCCCcEEEEEEc
Confidence 9885 99999999999853 2233344444
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.69 E-value=4.2e-17 Score=153.17 Aligned_cols=121 Identities=26% Similarity=0.394 Sum_probs=99.3
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.+.|.|+|++|++|+.++..+.+||||+|++.+ ..++|++++ +++||+|||+|.|. +.. ....|.|.|||
T Consensus 9 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~-----~~~kT~~~~~~~~nP~Wne~f~f~-v~~---~~~~l~~~V~d 79 (136)
T 1wfj_A 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-----QDQKSNVAEGMGTTPEWNETFIFT-VSE---GTTELKAKIFD 79 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-----CEEECCCCTTCCSSCEEEEEEEEE-EES---SCCEEEEEECC
T ss_pred cEEEEEEEEeccCCCCcccCCCcCceEEEEECC-----ccceeEeccCCCCCCccCcEEEEE-ECC---CCCEEEEEEEE
Confidence 478999999999999999999999999999965 467999998 89999999999995 443 35799999999
Q ss_pred CCCCCC-ccceeeeecCcccC-CCCccceEeecccCCCCCccccccccccccccceeEEeeeccccc
Q psy7848 563 DDKYGH-DFLGEARFPLNRLR-PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK 627 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~-~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~ 627 (754)
+|.+++ +|||++.|+|.++. .......|+.|. . .....|+|+|++.|.|..
T Consensus 80 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~------~--------~~~~~G~i~l~l~~~p~~ 132 (136)
T 1wfj_A 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV------K--------DEEYKGEIWVALSFKPSG 132 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE------E--------TTEEEEEEEEEEEEEECC
T ss_pred CCCCCCCceEEEEEEEHHHhccCCCCCcEEEEee------c--------CCccCEEEEEEEEEEeCC
Confidence 999987 99999999999983 332233455443 1 135789999999998864
|
| >2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-17 Score=158.26 Aligned_cols=114 Identities=20% Similarity=0.328 Sum_probs=93.2
Q ss_pred CCEEEEEEEEecCCCCCCC----------CCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCc
Q psy7848 484 TCSLHVTLHRAKGLRAMDI----------HGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSL 553 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~----------~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~ 553 (754)
.+.|.|+|++|+||+++|. .+.+||||+|.+.+ ....+|+++.+|+||+|||+|.|. +.. .
T Consensus 28 ~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~----~~~~kT~v~~ktlnP~WNE~F~f~-v~~----~ 98 (157)
T 2fk9_A 28 NGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQ----VRVGQTSTKQKTNKPTYNEEFCAN-VTD----G 98 (157)
T ss_dssp EEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETT----EEEEECCCCSSCSSCEEEEEEEEE-EEE----E
T ss_pred ccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECC----EeeEEeeecCCCCCCccCcEEEEE-cCC----C
Confidence 4789999999999999883 36799999999953 345799999999999999999995 432 3
Q ss_pred ceEEEEEeeCCCCCC-ccceeeeecCcccCCC----CccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 554 QSLHILVLDDDKYGH-DFLGEARFPLNRLRPH----ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 554 ~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~----~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
..|.|.|||+|.++. +|||++.|+|.+|..+ ...+.|++|+ ..|+|+|.+.|.
T Consensus 99 ~~L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~------------------~~G~i~l~l~~~ 156 (157)
T 2fk9_A 99 GHLELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLE------------------PEGKVFVVITLT 156 (157)
T ss_dssp CEEEEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECB------------------SSCEEEEEEEEC
T ss_pred CEEEEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECC------------------CCcEEEEEEEEE
Confidence 689999999999987 9999999999998643 3445555552 279999998874
|
| >1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=153.05 Aligned_cols=117 Identities=21% Similarity=0.315 Sum_probs=94.7
Q ss_pred CCEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGT-----------SDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS 552 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~-----------sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~ 552 (754)
.+.|.|+|++|+||+++|..+. +||||+|.+.+ ....+|+++.+|+||+|||+|.|. +...
T Consensus 5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~----~~~~~T~~~~~t~nP~WnE~f~f~-v~~~--- 76 (136)
T 1gmi_A 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDD----SRIGQTATKQKTNSPAWHDEFVTD-VCNG--- 76 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETT----EEEEECCCCSSCSSCEEEEEEEEE-EEEE---
T ss_pred ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECC----eEeeeeeEECCCcCCccCCEEEEE-ecCC---
Confidence 4789999999999999885443 99999999842 355799999999999999999995 4332
Q ss_pred cceEEEEEeeCCCCCC-ccceeeeecCcccCCCCc--cceEeecccCCCCCccccccccccccccceeEEeeeccccc
Q psy7848 553 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS--RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKK 627 (754)
Q Consensus 553 ~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~--~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~ 627 (754)
..|.|.|||+|.++. +|||++.|+|.++..... .+.|+.| ...|+|+|.+.|.+..
T Consensus 77 -~~L~~~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L------------------~~~G~i~l~l~~~~~~ 135 (136)
T 1gmi_A 77 -RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------------EPEGKVYVIIDLSGSS 135 (136)
T ss_dssp -CEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------------BSSCEEEEEEEEEEEE
T ss_pred -CEEEEEEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEc------------------CCCeEEEEEEEEEecC
Confidence 789999999999887 999999999999876432 2344433 2379999999997653
|
| >3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-17 Score=154.51 Aligned_cols=95 Identities=25% Similarity=0.383 Sum_probs=77.8
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCC--cceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH--KRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~--k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
..+.|.|.|++|+||+.++.+|.+||||+|++.+... ..+++|+++++|+||+|||+|.|.+... ...|.|+|||
T Consensus 18 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~~l~~~V~d 94 (153)
T 3b7y_A 18 NSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQ---QHRLLFEVFD 94 (153)
T ss_dssp TCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTT---TCEEEEEEEE
T ss_pred CccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCC---CCEEEEEEEE
Confidence 4478999999999999999999999999999975433 2488999999999999999999998642 5789999999
Q ss_pred ccCCCCCceeEEEEEecCCC
Q psy7848 704 KDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ 723 (754)
++.+++|++||.+.|++...
T Consensus 95 ~d~~~~d~~iG~~~i~l~~l 114 (153)
T 3b7y_A 95 ENRLTRDDFLGQVDVPLYPL 114 (153)
T ss_dssp CCSSSCCEEEEEEEEECCSC
T ss_pred CCCCcCCCeeEEEEEEHHHc
Confidence 99999999999999999864
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=147.82 Aligned_cols=123 Identities=27% Similarity=0.364 Sum_probs=95.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
...|.|+|++|++|+.+|..|.+||||++++.+. ...++|+++.+|+||+|||+|.|. +... ..|.|+|||+
T Consensus 4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~---~~~~kT~v~~~t~nP~wne~f~f~-v~~~----~~l~~~v~d~ 75 (132)
T 3pyc_A 4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS---GQCHSTDTVKNTLDPKWNQHYDLY-VGKT----DSITISVWNH 75 (132)
T ss_dssp EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT---CCEEECCCCSSCSSCEEEEEEEEE-EETT----CCEEEEEEEG
T ss_pred eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC---CceEECCccCCCCCCCccCEEEEE-eCCC----CEEEEEEEEC
Confidence 3579999999999999999999999999999653 368899999999999999999984 4332 3599999999
Q ss_pred CCCC----CccceeeeecCccc-CCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 564 DKYG----HDFLGEARFPLNRL-RPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 564 d~~g----~dfLGev~I~L~~L-~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
|.++ ++|||++.|++.+| ........+++|.... +.......|+|.|++.+
T Consensus 76 d~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~---------~~~~~~~~G~i~v~l~~ 131 (132)
T 3pyc_A 76 KKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLN---------PSDTDAVRGQIVVSLQT 131 (132)
T ss_dssp GGTTSSTTTTEEEEEEECHHHHHHHTTSCCEEEECBCSS---------TTCCCCCCSEEEEEEEE
T ss_pred CCCCCCCCCCceEEEEEeHHHhhcccccCcEEEeeeecC---------CCCCCceeEEEEEEEEc
Confidence 9986 49999999999987 2222334555554311 01113568999999865
|
| >3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=155.72 Aligned_cols=97 Identities=24% Similarity=0.363 Sum_probs=78.8
Q ss_pred ccccceeeccccccccccCCCCCCCCceEEEEecCCCCc--ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 625 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 625 p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
...+.|.|.|++|+||+.++.+|.+||||+|++.+...+ .+++|+++++++||+|||+|.|.+... ...|.|+||
T Consensus 5 ~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~---~~~L~~~V~ 81 (176)
T 3m7f_B 5 DDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQ---RHRILFEVF 81 (176)
T ss_dssp TTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTT---TCEEEEEEE
T ss_pred CCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCC---CCEEEEEEE
Confidence 345889999999999999999999999999999754333 478999999999999999999999643 478999999
Q ss_pred EccCCCCCceeEEEEEecCCCC
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKG 724 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~g 724 (754)
|++.++.|+|||.+.|+|....
T Consensus 82 d~d~~~~d~~lG~~~i~l~~l~ 103 (176)
T 3m7f_B 82 DENRLTRDDFLGQVDVPLYPLP 103 (176)
T ss_dssp ECC----CEEEEEEEEESCSCC
T ss_pred ECCCCCCCcEEEEEEEEHHHcc
Confidence 9999999999999999998743
|
| >1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 | Back alignment and structure |
|---|
Probab=99.66 E-value=5.9e-17 Score=152.16 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=86.5
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCccCCCeEEEEEEEc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
..+.|.|.|++|+||+.++.+|.+||||+|++.+ .+++|++++ +++||+|||+|.|.+.. ....|.|+|||+
T Consensus 8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~----~~~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d~ 80 (136)
T 1wfj_A 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT----QDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDK 80 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS----CEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCS
T ss_pred CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC----ccceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEEC
Confidence 3478999999999999999999999999999943 378999998 89999999999999973 467999999999
Q ss_pred cCCCCCceeEEEEEecCCC---CchhhhHHhhh
Q psy7848 705 DYGKSNDYLGCLELCCNSK---GDRLRHWVDMM 734 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s~---ge~~~hW~~ll 734 (754)
+.+++|++||.+.|++... ++....||+|.
T Consensus 81 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~ 113 (136)
T 1wfj_A 81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV 113 (136)
T ss_dssp SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE
T ss_pred CCCCCCceEEEEEEEHHHhccCCCCCcEEEEee
Confidence 9999999999999998753 22234455554
|
| >2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=3e-18 Score=143.23 Aligned_cols=69 Identities=23% Similarity=0.580 Sum_probs=61.4
Q ss_pred HHHHHHHhhhhcc---CCCccccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccch
Q psy7848 117 LVERVDNMKRNVT---GGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICA 193 (754)
Q Consensus 117 L~~~l~~~k~~~~---~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~ 193 (754)
+++||+++||++. .++++++.|+||+++|| ++++++++|.+|+|+||++|+++.+ ++.|+|+||+
T Consensus 4 ~~~eL~elrrkgak~~s~~~~~r~CarC~~~LG-------~l~~~g~~C~~Ck~rVC~~Crv~~~-----~~~W~C~VC~ 71 (76)
T 2csz_A 4 GSSGLLEIKRKGAKRGSQHYSDRTCARCQESLG-------RLSPKTNTCRGCNHLVCRDCRIQES-----NGTWRCKVCS 71 (76)
T ss_dssp CCCCCCCCCCCCSCSCCTTCCCCBCSSSCCBCS-------SSCTTTSEETTTTEECCTTSEEECS-----TTCEEEHHHH
T ss_pred hHHHHHHHHHccccCcCcCCCccchhhhCcccc-------ccccCCCcCcccChhhcccccccCC-----CCCEEEeeCc
Confidence 4678999999984 33568899999999999 7888899999999999999999996 4899999999
Q ss_pred hhhh
Q psy7848 194 ETRE 197 (754)
Q Consensus 194 ~~re 197 (754)
|++|
T Consensus 72 k~~e 75 (76)
T 2csz_A 72 GPSS 75 (76)
T ss_dssp SSCC
T ss_pred hhhc
Confidence 9986
|
| >3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3e-16 Score=146.79 Aligned_cols=89 Identities=24% Similarity=0.436 Sum_probs=79.0
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
..|.|.|++|++|+++|.+|.+||||+|++.+. ..+++|+++++|+||+|||+|.|.+... ..|.|+|||++.+
T Consensus 5 ~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~--~~~~kT~v~~~t~nP~wne~f~f~v~~~----~~l~~~v~d~d~~ 78 (132)
T 3pyc_A 5 IKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGS--GQCHSTDTVKNTLDPKWNQHYDLYVGKT----DSITISVWNHKKI 78 (132)
T ss_dssp EEEEEEEEEEESCCCCSTTCCCCEEEEEEETTT--CCEEECCCCSSCSSCEEEEEEEEEEETT----CCEEEEEEEGGGT
T ss_pred EEEEEEEEEeECCCCCCCCCCcCeEEEEEECCC--CceEECCccCCCCCCCccCEEEEEeCCC----CEEEEEEEECCCC
Confidence 578999999999999999999999999999543 3589999999999999999999998643 3599999999988
Q ss_pred CC---CceeEEEEEecCC
Q psy7848 708 KS---NDYLGCLELCCNS 722 (754)
Q Consensus 708 ~~---ddfLG~v~L~l~s 722 (754)
++ |+|||.+.|++..
T Consensus 79 ~~~~~d~~lG~~~i~l~~ 96 (132)
T 3pyc_A 79 HKKQGAGFLGCVRLLSNA 96 (132)
T ss_dssp TSSTTTTEEEEEEECHHH
T ss_pred CCCCCCCceEEEEEeHHH
Confidence 76 7999999999764
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.7e-15 Score=149.31 Aligned_cols=122 Identities=19% Similarity=0.215 Sum_probs=93.9
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.+.|.|+|++|++|+..+..+.+||||+|++.+ .+++|+++.+|+||+|||+|.|. +.. ...|.|.|||+
T Consensus 35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~-----~~~kT~v~~~tlnP~Wne~f~f~-v~~----~~~L~~~V~D~ 104 (173)
T 2nq3_A 35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDG-----QSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSH 104 (173)
T ss_dssp CEEEEEEEEEEEECCCC--CCCCCEEEEEEETT-----EEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEEC
T ss_pred ceEEEEEEEEeECCCCcccCCCCCeEEEEEECC-----EEeEccccCCCCCCeECCEEEEE-eCC----CCEEEEEEEEC
Confidence 467999999999999444344599999999953 78999999999999999999994 432 58999999999
Q ss_pred CCCCC-ccceeeeecCcccCCCCcc-----ceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 564 DKYGH-DFLGEARFPLNRLRPHISR-----DLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 564 d~~g~-dfLGev~I~L~~L~~~~~~-----~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
|.++. +|||++.|+|.++...... ..|+.|.. .. ......|+|.|.+.|.+.
T Consensus 105 d~~~~dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~------~~-----~~~~~~G~L~v~l~~l~~ 162 (173)
T 2nq3_A 105 QTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGG------DK-----EPTETIGDLSICLDGLQL 162 (173)
T ss_dssp CSSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEE------SS-----CTTSEEEEEEEEEESEEC
T ss_pred CCCCCCceEEEEEEEHHHhcccCCCCcceeEEEEECcc------CC-----CCCcccEEEEEEEeeeec
Confidence 99987 9999999999998643211 33555532 10 113568999999988643
|
| >2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=1.8e-15 Score=149.10 Aligned_cols=89 Identities=18% Similarity=0.183 Sum_probs=76.7
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
..+.|.|.|++|++|+..+..+.+||||+|++.+ .++||+++++|+||+|||+|.|.+. ....|.|+|||+|
T Consensus 34 ~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~----~~~kT~v~~~tlnP~Wne~f~f~v~----~~~~L~~~V~D~d 105 (173)
T 2nq3_A 34 MKSQLQITVISAKLKENKKNWFGPSPYVEVTVDG----QSKKTEKCNNTNSPKWKQPLTVIVT----PVSKLHFRVWSHQ 105 (173)
T ss_dssp CCEEEEEEEEEEEECCCC--CCCCCEEEEEEETT----EEEECCCCSSCSSCEEEEEEEEEEC----TTCEEEEEEEECC
T ss_pred CceEEEEEEEEeECCCCcccCCCCCeEEEEEECC----EEeEccccCCCCCCeECCEEEEEeC----CCCEEEEEEEECC
Confidence 3478999999999999444444499999999942 6899999999999999999999984 2689999999999
Q ss_pred CCCCCceeEEEEEecCC
Q psy7848 706 YGKSNDYLGCLELCCNS 722 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s 722 (754)
.+++|+|||.+.|++..
T Consensus 106 ~~~~dd~lG~~~i~l~~ 122 (173)
T 2nq3_A 106 TLKSDVLLGTAALDIYE 122 (173)
T ss_dssp SSSCCEEEEEEEEEHHH
T ss_pred CCCCCceEEEEEEEHHH
Confidence 99999999999999874
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=3.9e-14 Score=133.15 Aligned_cols=83 Identities=16% Similarity=0.208 Sum_probs=69.0
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeee-cCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVK-WKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~-kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
+.|.|+|++|++|. .+|.+||||+|.. ...||.++ .+|+||+|||+|.|.+.. ....|.|+|||+|
T Consensus 5 ~~L~V~V~~A~~l~---~~g~~DPYv~v~~------~~~kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d- 71 (131)
T 2cjt_A 5 SLLCVGVKKAKFDG---AQEKFNTYVTLKV------QNVKSTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG- 71 (131)
T ss_dssp EEEEEEEEEEECSS---CGGGCEEEEEEEE------TTEEEECCCEESSSCEEEEEEEEEECC---CSSEEEEEEEECC-
T ss_pred eEEEEEEEEeECCC---CCCCcCeEEEEEe------cCEEEeEecCCCCCceECCEEEEEEeC---CCCeEEEEEEECC-
Confidence 68999999999885 2678999999992 13455544 479999999999999963 2467999999999
Q ss_pred CCCCceeEEEEEecCCC
Q psy7848 707 GKSNDYLGCLELCCNSK 723 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ 723 (754)
++.|++||.+.|++...
T Consensus 72 ~~~dd~iG~~~i~l~~l 88 (131)
T 2cjt_A 72 LIWDTMVGTVWIPLRTI 88 (131)
T ss_dssp SSCEEEEEEEEEEGGGS
T ss_pred CCCCCeEEEEEEEHHHh
Confidence 88999999999999864
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.48 E-value=5.5e-14 Score=160.05 Aligned_cols=92 Identities=28% Similarity=0.434 Sum_probs=82.9
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
..+.|.|.|++|+||+++|.+|.+||||+|++ +..+++|+++++|+||+|||+|.|.+. .+....|.|+|||+|
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~----~~~~~~T~~~~~t~nP~w~e~f~f~~~--~~~~~~l~~~v~d~d 458 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISM----GSQSYTTRTIQDTLNPKWNFNCQFFIK--DLYQDVLCLTLFDRD 458 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEE----TTEEEECCCCSSCSSCEEEEEEEEEES--CTTTCEEEEEEEECC
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEE----CCeeccCCccCCCCCCccCceEEEEec--CCCCCEEEEEEEeCC
Confidence 34789999999999999999999999999999 345899999999999999999999985 445678999999999
Q ss_pred CCCCCceeEEEEEecCCC
Q psy7848 706 YGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s~ 723 (754)
.+++|+|||.+.|++...
T Consensus 459 ~~~~~d~lG~~~~~l~~l 476 (510)
T 3jzy_A 459 QFSPDDFLGRTEIPVAKI 476 (510)
T ss_dssp SSSSCCEEEEEEEEHHHH
T ss_pred CCCCCCceEEEEEEHHHh
Confidence 999999999999999863
|
| >2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=128.93 Aligned_cols=86 Identities=20% Similarity=0.319 Sum_probs=68.9
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeee-cCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC-LRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi-~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.+.|.|+|++|++|+. .|.+||||+|. . ...+|+++ .+++||+|||+|.|. +... ...|.|.|||
T Consensus 4 ~~~L~V~V~~A~~l~~---~g~~DPYv~v~-~------~~~kt~~~~~~t~nP~WnE~f~f~-v~~~---~~~L~~~V~D 69 (131)
T 2cjt_A 4 MSLLCVGVKKAKFDGA---QEKFNTYVTLK-V------QNVKSTTIAVRGSQPSWEQDFMFE-INRL---DLGLTVEVWN 69 (131)
T ss_dssp CEEEEEEEEEEECSSC---GGGCEEEEEEE-E------TTEEEECCCEESSSCEEEEEEEEE-ECCC---SSEEEEEEEE
T ss_pred ceEEEEEEEEeECCCC---CCCcCeEEEEE-e------cCEEEeEecCCCCCceECCEEEEE-EeCC---CCeEEEEEEE
Confidence 3679999999998852 67899999999 2 23355555 479999999999995 4422 3579999999
Q ss_pred CCCCCC-ccceeeeecCcccCCC
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
+| ++. +|||++.|+|.++...
T Consensus 70 ~d-~~~dd~iG~~~i~l~~l~~~ 91 (131)
T 2cjt_A 70 KG-LIWDTMVGTVWIPLRTIRQS 91 (131)
T ss_dssp CC-SSCEEEEEEEEEEGGGSCBC
T ss_pred CC-CCCCCeEEEEEEEHHHhhhc
Confidence 99 777 9999999999998644
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-13 Score=131.03 Aligned_cols=122 Identities=15% Similarity=0.221 Sum_probs=99.9
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.-.|.|+|..|.+|+ |.+|||+++.+ +..+++|++++ ++.||+|||.|.|. +.........|.|.|+|
T Consensus 20 ~msL~V~l~~a~~Lp-----g~~Dp~akv~F-----Rg~k~kTkvi~~~~~npvfnE~F~wp-l~~~ld~~e~L~v~V~d 88 (144)
T 3l9b_A 20 HMALIVHLKTVSELR-----GRADRIAKVTF-----RGQSFYSRVLENCEDVADFDETFRWP-VASSIDRNEVLEIQIFN 88 (144)
T ss_dssp CEEEEEEEEEEESCC-----SCEEEEEEEEE-----TTEEEECCCEEEECSCEEEEEEEEEE-ESSCCCTTCEEEEEEEE
T ss_pred cEEEEEEEEEecCCC-----CCCCCeEEEEE-----eccceeeEEeccCCCCceEcceEEec-CCCCCCCCCEEEEEEEE
Confidence 356999999999998 47899999999 44899999998 69999999999995 55566677999999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecccccc
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKR 628 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~g 628 (754)
++++++ .+||++.|+|.+|.......++..|.+ .......+.|.+.+.|.|..|
T Consensus 89 ~~~v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD------------~n~~~~~a~I~l~l~Y~pp~g 143 (144)
T 3l9b_A 89 YSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLID------------DNNAIIKTSLSMEVRYQAADG 143 (144)
T ss_dssp ECTTSCCEEEEEEEEESHHHHHHSEEEEEEEEEC------------TTSCEEEEEEEEEEEEEETTC
T ss_pred CccccCCCEEEEEEEEhHHhccCCeEEEeecccC------------CCCCccccEEEEEEEecCCCC
Confidence 999998 999999999999987655555544432 111234489999999998765
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.4e-14 Score=166.82 Aligned_cols=125 Identities=31% Similarity=0.601 Sum_probs=105.9
Q ss_pred ccccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEe
Q psy7848 609 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIET 687 (754)
Q Consensus 609 ~~~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V 687 (754)
+....+|.|.+++.|. .+.|.|.|++|+||.++|.+|.+||||++++.++... .++||+++++|+||+|||+|.|.+
T Consensus 155 d~~~~~g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~ 232 (674)
T 3pfq_A 155 DHTERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232 (674)
T ss_dssp CSSCCSCEEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEEC
T ss_pred ccccccccccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeec
Confidence 4456789998888875 5789999999999999999999999999999887544 489999999999999999999998
Q ss_pred ecCccCCCeEEEEEEEccCCCCCceeEEEEEecCC-CCchhhhHHhhhcC
Q psy7848 688 KITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVDMMKY 736 (754)
Q Consensus 688 ~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s-~ge~~~hW~~ll~~ 736 (754)
...+. ...|.|+|||+|.++.|++||.+.+++.. ...+..+|+.|+..
T Consensus 233 ~~~~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~~~~w~~Lls~ 281 (674)
T 3pfq_A 233 KESDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQ 281 (674)
T ss_dssp CSTTT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCCEEEEEECBCT
T ss_pred ccCCc-cceeeeEEeecccccccccccccccchhhhccCCcccceeeccc
Confidence 76553 46799999999999999999999999885 22345677777643
|
| >3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B | Back alignment and structure |
|---|
Probab=99.44 E-value=1.6e-13 Score=156.29 Aligned_cols=121 Identities=22% Similarity=0.471 Sum_probs=95.1
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
..+.|.|+|++|++|+.+|..|.+||||+|++.+ ..++|+++.+|+||+|||+|.|. + .......|+|.|||
T Consensus 385 ~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~-----~~~~T~~~~~t~nP~w~e~f~f~-~--~~~~~~~l~~~v~d 456 (510)
T 3jzy_A 385 GIGRLMVHVIEATELKACKPNGKSNPYCEISMGS-----QSYTTRTIQDTLNPKWNFNCQFF-I--KDLYQDVLCLTLFD 456 (510)
T ss_dssp -CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT-----EEEECCCCSSCSSCEEEEEEEEE-E--SCTTTCEEEEEEEE
T ss_pred CCceEEEEeceeecCCCCCCCCCCCeEEEEEECC-----eeccCCccCCCCCCccCceEEEE-e--cCCCCCEEEEEEEe
Confidence 4578999999999999999999999999999943 78899999999999999999984 3 23345789999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
+|.++. +|||++.++|.++..+.... .++..|+++. ....|+|.|.+.+
T Consensus 457 ~d~~~~~d~lG~~~~~l~~l~~~~~~~--~~~~~~~~l~----------~~~~G~i~l~~~l 506 (510)
T 3jzy_A 457 RDQFSPDDFLGRTEIPVAKIRTEQESK--GPMTRRLLLH----------EVPTGEVWVRFDL 506 (510)
T ss_dssp CCSSSSCCEEEEEEEEHHHHHHHHHHH--CSCCEEEECB----------SSSSCEEEEEEEE
T ss_pred CCCCCCCCceEEEEEEHHHhccccCCC--CceeeeecCC----------CCCCceEEEEEEE
Confidence 999987 99999999999986543211 1122333332 2356888888765
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.9e-13 Score=156.64 Aligned_cols=96 Identities=26% Similarity=0.518 Sum_probs=82.3
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
+.|.|.|++|+||+. |.+|.+||||+|++. ..++||+++++|+||+|||+|.|.+.... ....|.|+|||+|.+
T Consensus 394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~----~~~~kTkvik~tlNP~Wne~f~f~~~~~~-~~~~L~~~V~D~D~~ 467 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFG----GQEFRTGVVWNNNNPRWTDKMDFENVLLS-TGGPLRVQVWDADYG 467 (540)
T ss_dssp EEEEEEEEEEESCCC-SSCSCCCEEEEEEET----TEEEECCCBCSCSSCBCCCCEEEEEEETT-TCCCEEEEEEECCSS
T ss_pred cEEEEEEEEccCCCc-ccCCCcCeEEEEEEC----CEeeeeeeecCCCCCCCCeEEEEEEecCC-CCCEEEEEEEECCCC
Confidence 689999999999998 999999999999994 34799999999999999999999864211 357899999999999
Q ss_pred CCCceeEEEEEecCCCCchhhhHH
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWV 731 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~ 731 (754)
++|||||.+.++|.. |. ..+|.
T Consensus 468 ~~dD~LG~~~~~L~~-g~-~~~~~ 489 (540)
T 3nsj_A 468 WDDDLLGSCDRSPHS-GF-HEVTC 489 (540)
T ss_dssp SCCEEEEEEEECCCS-EE-EEEEE
T ss_pred CCCCEEEEEEEEeeC-Cc-EEEEE
Confidence 999999999999984 32 34554
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=163.11 Aligned_cols=105 Identities=20% Similarity=0.325 Sum_probs=88.6
Q ss_pred cccceeecccccccccc---CCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 626 KKRALIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~---~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
..+.|.|.|++|++|+. +|.+|.+||||+|++.+.. ..++||+++++|+||+|||+|.|.+... ....|.|+||
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~-~~k~kTkvik~tlNPvWNEtF~F~v~~~--~~~~L~~~V~ 92 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTP-DSRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLM 92 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTST-TCCEECCCCTTCSSCEEEEEEEEEECTT--SCCBCEEEEE
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCC-CCeEecceEcCCCCCeeeeEEEEEecCC--CCCEEEEEEE
Confidence 34789999999999999 8888999999999997542 3589999999999999999999999642 4578999999
Q ss_pred EccCCCCCceeEEEEEecCCC--CchhhhHHhhh
Q psy7848 703 DKDYGKSNDYLGCLELCCNSK--GDRLRHWVDMM 734 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~--ge~~~hW~~ll 734 (754)
|+|.++ |++||.+.|++... +....+|++|.
T Consensus 93 D~D~~~-ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 93 DANYVM-DETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp ECCSSS-CEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred ECCCCC-CceeEEEEEEHHHcCCCCceEEEEecC
Confidence 999998 99999999999863 33445566554
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-13 Score=132.99 Aligned_cols=83 Identities=14% Similarity=0.196 Sum_probs=69.6
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
+.|.|.|++|++|. .+|.+||||+|.. ..+||.+++ +++||+|||+|.|.+.. ....|.|+|||+|
T Consensus 14 ~~L~V~V~~A~~l~---~~g~~DPYV~v~~------~~~kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d- 80 (167)
T 2cjs_A 14 SLLCVGVKKAKFDG---AQEKFNTYVTLKV------QNVESTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG- 80 (167)
T ss_dssp CEEEEEEEEEECSS---CGGGCEEEEEEEE------TTEEEECCCEESSSCEEEEEEEEECCC---TTSEEEEEEEECC-
T ss_pred EEEEEEEEEEECCC---CCCCCCeEEEEEe------cceEEEEecCCCCCCCCCCEEEEEeeC---CCCEEEEEEEECC-
Confidence 68999999999884 3688999999992 235666654 79999999999999963 2467999999999
Q ss_pred CCCCceeEEEEEecCCC
Q psy7848 707 GKSNDYLGCLELCCNSK 723 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ 723 (754)
++.|++||.+.|++...
T Consensus 81 ~~~dd~iG~~~i~L~~l 97 (167)
T 2cjs_A 81 LIWDTMVGTVWIPLRTI 97 (167)
T ss_dssp SSCCEEEEEEEEEGGGS
T ss_pred CCCCceEEEEEEEHHHh
Confidence 88899999999999864
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-13 Score=159.41 Aligned_cols=113 Identities=23% Similarity=0.314 Sum_probs=94.0
Q ss_pred ccceeeccccccccccCCC--CCCCCceEEEEecCCCCc-ceeeeeeecCC-CCCccceeEEEEeecCccCCCeEEEEEE
Q psy7848 627 KRALIVNLIKCTNLIPMDS--NGFSDPFIKLYLKPDLHK-RKYKTGVKWKT-LNPIFNEEFAIETKITELSKQTLVITVW 702 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~--~G~sDPYVKV~L~~~~~k-~k~KT~v~kkT-lNP~wNEtF~F~V~~~dL~~~~L~ItV~ 702 (754)
.+.|.|.|++|++|+.++. +|.+||||+|.+.+.... .++||++++++ +||+|||+|.|.|...++ ..|.|+||
T Consensus 496 ~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el--~~L~~~V~ 573 (624)
T 1djx_A 496 PERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDL--ALVRFMVE 573 (624)
T ss_dssp CEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGG--CEEEEEEE
T ss_pred ceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCC--CEEEEEEE
Confidence 4789999999999999884 789999999999654322 48899999998 999999999999975554 68999999
Q ss_pred EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
|+|.+++|+|||.+.|++.....++. |+.|...-+.++.
T Consensus 574 D~D~~~~dd~iG~~~ipl~~L~~G~r-~v~L~d~~g~~~~ 612 (624)
T 1djx_A 574 DYDSSSKNDFIGQSTIPWNSLKQGYR-HVHLLSKNGDQHP 612 (624)
T ss_dssp ECCSSSCCEEEEEEEEEGGGBCCEEE-EEEEECTTSCEEE
T ss_pred EcCCCCCCceeEEEEEEHHHcCCCcE-EEeCCCCCcCCCC
Confidence 99999999999999999998665553 6677666565543
|
| >3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-12 Score=150.26 Aligned_cols=87 Identities=25% Similarity=0.311 Sum_probs=76.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|+|++|++|+. |..|.+||||+|.+.+ ..++|+++++++||+|||+|.|..+... ....|+|.|||+|
T Consensus 394 ~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~-----~~~kTkvik~tlNP~Wne~f~f~~~~~~--~~~~L~~~V~D~D 465 (540)
T 3nsj_A 394 AHLVVSNFRAEHLWG-DYTTATDAYLKVFFGG-----QEFRTGVVWNNNNPRWTDKMDFENVLLS--TGGPLRVQVWDAD 465 (540)
T ss_dssp EEEEEEEEEEESCCC-SSCSCCCEEEEEEETT-----EEEECCCBCSCSSCBCCCCEEEEEEETT--TCCCEEEEEEECC
T ss_pred cEEEEEEEEccCCCc-ccCCCcCeEEEEEECC-----EeeeeeeecCCCCCCCCeEEEEEEecCC--CCCEEEEEEEECC
Confidence 578899999999999 9999999999999953 5699999999999999999998533222 3578999999999
Q ss_pred CCCC-ccceeeeecCc
Q psy7848 565 KYGH-DFLGEARFPLN 579 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~ 579 (754)
.+++ ||||++.++|.
T Consensus 466 ~~~~dD~LG~~~~~L~ 481 (540)
T 3nsj_A 466 YGWDDDLLGSCDRSPH 481 (540)
T ss_dssp SSSCCEEEEEEEECCC
T ss_pred CCCCCCEEEEEEEEee
Confidence 9988 99999999998
|
| >3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.2e-13 Score=125.16 Aligned_cols=108 Identities=18% Similarity=0.178 Sum_probs=87.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
-.|+|.|.+|.+|+ |.+|||+++.+ ...++||++++ .++||+|||.|.|++........+|.|.|+|++.
T Consensus 21 msL~V~l~~a~~Lp-----g~~Dp~akv~F----Rg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~ 91 (144)
T 3l9b_A 21 MALIVHLKTVSELR-----GRADRIAKVTF----RGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSK 91 (144)
T ss_dssp EEEEEEEEEEESCC-----SCEEEEEEEEE----TTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECT
T ss_pred EEEEEEEEEecCCC-----CCCCCeEEEEE----eccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECcc
Confidence 35889999999998 57999999999 45699999998 6999999999999998766678899999999999
Q ss_pred CCCCceeEEEEEecCC--CCchhhhHHhhhcCCCcceeeE
Q psy7848 707 GKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHEGI 744 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s--~ge~~~hW~~ll~~P~~~ie~W 744 (754)
+++|.+||.+.|+|.. .+.....+..|+.....++...
T Consensus 92 v~~nrlIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~ 131 (144)
T 3l9b_A 92 VFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTS 131 (144)
T ss_dssp TSCCEEEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEE
T ss_pred ccCCCEEEEEEEEhHHhccCCeEEEeecccCCCCCccccE
Confidence 9999999999999875 2223333455555555555443
|
| >2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.2e-12 Score=128.20 Aligned_cols=86 Identities=20% Similarity=0.304 Sum_probs=69.1
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.+.|.|+|++|++|+ ..+.+||||+|. . ...+|+++. +++||+|||+|.|. +.. . ...|.|.|||
T Consensus 13 ~~~L~V~V~~A~~l~---~~g~~DPYV~v~-~------~~~kt~~~~~~t~nP~WnE~f~f~-v~~--~-~~~L~~~V~D 78 (167)
T 2cjs_A 13 LSLLCVGVKKAKFDG---AQEKFNTYVTLK-V------QNVESTTIAVRGSQPSWEQDFMFE-INR--L-DLGLTVEVWN 78 (167)
T ss_dssp CCEEEEEEEEEECSS---CGGGCEEEEEEE-E------TTEEEECCCEESSSCEEEEEEEEE-CCC--T-TSEEEEEEEE
T ss_pred eEEEEEEEEEEECCC---CCCCCCeEEEEE-e------cceEEEEecCCCCCCCCCCEEEEE-eeC--C-CCEEEEEEEE
Confidence 358999999999884 367899999999 2 234666665 69999999999994 432 2 3579999999
Q ss_pred CCCCCC-ccceeeeecCcccCCC
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
+| ++. +|||++.|+|.++...
T Consensus 79 ~d-~~~dd~iG~~~i~L~~l~~~ 100 (167)
T 2cjs_A 79 KG-LIWDTMVGTVWIPLRTIRQS 100 (167)
T ss_dssp CC-SSCCEEEEEEEEEGGGSCBC
T ss_pred CC-CCCCceEEEEEEEHHHhccc
Confidence 99 666 9999999999998654
|
| >3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A | Back alignment and structure |
|---|
Probab=99.34 E-value=3.7e-12 Score=150.40 Aligned_cols=120 Identities=33% Similarity=0.476 Sum_probs=102.2
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
...|.|.+++.|+ .+.|.|+|++|++|.++|.+|.+||||++.+.++.....+.+|+++.+|+||+|||+|.|. +..
T Consensus 158 ~~~g~i~~~~~~~--~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~-~~~ 234 (674)
T 3pfq_A 158 ERRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQ-LKE 234 (674)
T ss_dssp CCSCEEEEEEEEC--SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEE-CCS
T ss_pred cccccccccceec--cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeee-ccc
Confidence 4688999998885 7899999999999999999999999999999887666678999999999999999999995 444
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
.+. ...|.|+|||+|.++. +|||++.|+|.++.... ...|..+
T Consensus 235 ~~~-~~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~L 278 (674)
T 3pfq_A 235 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKL 278 (674)
T ss_dssp TTT-TCEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEEC
T ss_pred CCc-cceeeeEEeecccccccccccccccchhhhccCC-cccceee
Confidence 443 3579999999999988 99999999999987552 3445544
|
| >1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A | Back alignment and structure |
|---|
Probab=99.33 E-value=6.2e-12 Score=146.87 Aligned_cols=124 Identities=19% Similarity=0.343 Sum_probs=95.6
Q ss_pred cCCEEEEEEEEecCCCCCCC--CCCCCcEEEEEEeCCCCCceEEEeeeecCC-CCCeeceeEEEeeeeccccCcceEEEE
Q psy7848 483 TTCSLHVTLHRAKGLRAMDI--HGTSDPFCKLNLVPLTKTSHRLRTKTCLRT-INPEFHEKLTFYSVSETDLSLQSLHIL 559 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~--~g~sDPYVkv~Llp~~~~~~~~rTkvi~~T-lNP~WnE~f~F~~I~~~el~~~~L~~s 559 (754)
..+.|.|+|++|++|+..+. .+.+||||+|.+.+......+.||+++.++ +||+|||+|.|. +...++ ..|+|.
T Consensus 495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~-v~~~el--~~L~~~ 571 (624)
T 1djx_A 495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPDL--ALVRFM 571 (624)
T ss_dssp CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEE-ESCGGG--CEEEEE
T ss_pred cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEE-EecCCC--CEEEEE
Confidence 34679999999999999884 689999999999753333468899999997 999999999994 554444 689999
Q ss_pred EeeCCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 560 VLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 560 V~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
|||+|.++. +|||++.|||..|..+ ..+++|.... +. .-..|.|+|.+.|
T Consensus 572 V~D~D~~~~dd~iG~~~ipl~~L~~G---~r~v~L~d~~---------g~--~~~~~~L~v~i~~ 622 (624)
T 1djx_A 572 VEDYDSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKN---------GD--QHPSATLFVKISI 622 (624)
T ss_dssp EEECCSSSCCEEEEEEEEEGGGBCCE---EEEEEEECTT---------SC--EEEEEEEEEEEEE
T ss_pred EEEcCCCCCCceeEEEEEEHHHcCCC---cEEEeCCCCC---------cC--CCCceEEEEEEEE
Confidence 999999987 9999999999999764 2345553210 01 1235777777766
|
| >1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A | Back alignment and structure |
|---|
Probab=99.32 E-value=2.1e-12 Score=152.45 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=91.8
Q ss_pred cCCEEEEEEEEecCCCC---CCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEE
Q psy7848 483 TTCSLHVTLHRAKGLRA---MDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHIL 559 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~---~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~s 559 (754)
..+.|.|+|++|++|+. +|..|.+||||+|++.+... .+++|+++++|+||+|||+|.|. +.. .....|+|+
T Consensus 16 ~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~--~k~kTkvik~tlNPvWNEtF~F~-v~~--~~~~~L~~~ 90 (749)
T 1cjy_A 16 YSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNETFEFI-LDP--NQENVLEIT 90 (749)
T ss_dssp CCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTT--CCEECCCCTTCSSCEEEEEEEEE-ECT--TSCCBCEEE
T ss_pred CccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCC--CeEecceEcCCCCCeeeeEEEEE-ecC--CCCCEEEEE
Confidence 35789999999999999 88889999999999976432 67899999999999999999994 433 235789999
Q ss_pred EeeCCCCCCccceeeeecCcccCCCCccceEeecc
Q psy7848 560 VLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 560 V~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
|||+|.+++++||++.|+|.+|..+.....|+.|.
T Consensus 91 V~D~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~ 125 (749)
T 1cjy_A 91 LMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFN 125 (749)
T ss_dssp EEECCSSSCEEEEEECCBSTTSCTTCCCCEEEEET
T ss_pred EEECCCCCCceeEEEEEEHHHcCCCCceEEEEecC
Confidence 99999988899999999999998877677777775
|
| >3bc1_B Synaptotagmin-like protein 2; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=1.6e-12 Score=103.59 Aligned_cols=40 Identities=35% Similarity=0.475 Sum_probs=35.5
Q ss_pred CCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhh
Q psy7848 87 PLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKR 126 (754)
Q Consensus 87 ~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~ 126 (754)
.|+++|+++||+||+||++|+++|++||++|+++|.+.++
T Consensus 2 ~l~e~E~~~IL~VL~RD~~lr~~ee~RIrkLk~~l~~~~~ 41 (59)
T 3bc1_B 2 SPEFEEQEAIMKVLQRDAALKRAEEERVRHLPEKIKDDQQ 41 (59)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCHHH
T ss_pred CCCHHHHHHHHHHHhhHHHHhhChHHHHHHHHHHhccHHH
Confidence 6899999999999999999999999999999887644443
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.5e-12 Score=148.00 Aligned_cols=97 Identities=15% Similarity=0.241 Sum_probs=12.8
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCC---CCCccceeEEEEeecCccCCCeEEEEEEEc
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT---LNPIFNEEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkT---lNP~wNEtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
+.|.|+|++|+||+++| ||||++++. +....||+++++| +||+|||+|.|.+.+. ...|.|+|||.
T Consensus 11 ~~L~V~VieAk~L~~~d-----dpYv~v~l~---~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~---~~~L~v~V~d~ 79 (483)
T 3bxj_A 11 NVLKLWIIEARELPPKK-----RYYCELCLD---DMLYARTTSKPRSASGDTVFWGEHFEFNNLPA---VRALRLHLYRD 79 (483)
T ss_dssp ECC-----------------------------------------------------CCEECC------------------
T ss_pred cEEEEEEEEcCCcCCCC-----CCeEEEEEC---CeEEeeeeEEeCCCCCCCCccccEEEEecCCC---ccEEEEEEEec
Confidence 78999999999999886 999999993 2236799999999 9999999999986432 37899999994
Q ss_pred -c---CCCCCceeEEEEEecCCC--CchhhhHHhhhc
Q psy7848 705 -D---YGKSNDYLGCLELCCNSK--GDRLRHWVDMMK 735 (754)
Q Consensus 705 -d---~~~~ddfLG~v~L~l~s~--ge~~~hW~~ll~ 735 (754)
| .+++|+|||.+.|++... +...++||+|..
T Consensus 80 ~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~ 116 (483)
T 3bxj_A 80 SDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTL 116 (483)
T ss_dssp ---------------------------CCEECC----
T ss_pred CCccccCCCCceEEEEEEEHHHhcCCCCCCeEEECCC
Confidence 4 367899999999999873 345677888753
|
| >3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.13 E-value=4.6e-12 Score=143.92 Aligned_cols=96 Identities=19% Similarity=0.269 Sum_probs=10.6
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCC---CCCeeceeEEEeeeeccccCcceEEEEEe
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRT---INPEFHEKLTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~T---lNP~WnE~f~F~~I~~~el~~~~L~~sV~ 561 (754)
+.|.|+|++|++|+++| ||||++++.+ ....||+++.+| +||+|||+|.|..++. ...|.|.||
T Consensus 11 ~~L~V~VieAk~L~~~d-----dpYv~v~l~~----~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~----~~~L~v~V~ 77 (483)
T 3bxj_A 11 NVLKLWIIEARELPPKK-----RYYCELCLDD----MLYARTTSKPRSASGDTVFWGEHFEFNNLPA----VRALRLHLY 77 (483)
T ss_dssp ECC------------------------------------------------------CCEECC-----------------
T ss_pred cEEEEEEEEcCCcCCCC-----CCeEEEEECC----eEEeeeeEEeCCCCCCCCccccEEEEecCCC----ccEEEEEEE
Confidence 67999999999999987 9999999953 235689999999 9999999999964322 378999999
Q ss_pred eC-C---CCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 562 DD-D---KYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 562 D~-d---~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
|. | +.++ +|||++.|++.++..+...+.|++|
T Consensus 78 d~~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L 114 (483)
T 3bxj_A 78 RDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPV 114 (483)
T ss_dssp -----------------------------CCEECC--
T ss_pred ecCCccccCCCCceEEEEEEEHHHhcCCCCCCeEEEC
Confidence 94 5 2455 9999999999999866554444444
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=99.00 E-value=4.3e-10 Score=134.57 Aligned_cols=104 Identities=19% Similarity=0.291 Sum_probs=80.4
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCCC--Ccceeeee-eecC-CCCCccce-eEEE-EeecCccCCCeEEEE
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HKRKYKTG-VKWK-TLNPIFNE-EFAI-ETKITELSKQTLVIT 700 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~--~k~k~KT~-v~kk-TlNP~wNE-tF~F-~V~~~dL~~~~L~It 700 (754)
.+.|.|.|+.|++|+. +.+||||+|.+.+.. ...++||+ ++++ ++||+||| +|.| .|...++. .|.|.
T Consensus 677 ~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~--~Lr~~ 750 (799)
T 2zkm_X 677 ATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELA--SLRVA 750 (799)
T ss_dssp CEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGC--EEEEE
T ss_pred eeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCcc--EEEEE
Confidence 3679999999999985 468999999997532 22378999 7764 69999999 6999 88766654 89999
Q ss_pred EEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcce
Q psy7848 701 VWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKH 741 (754)
Q Consensus 701 V~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~i 741 (754)
|||++ |+|||.+.|++.....++. |..|...-+.++
T Consensus 751 V~D~d----~d~iG~~~ipl~~L~~G~r-~v~L~~~~g~~~ 786 (799)
T 2zkm_X 751 VMEEG----NKFLGHRIIPINALNSGYH-HLCLHSESNMPL 786 (799)
T ss_dssp EEETT----TEEEEEEEEEGGGBCCEEE-EEEEECTTCCEE
T ss_pred EEEeC----CCccceEeeehhhcCCCcE-EEeccCCCCCCC
Confidence 99987 7999999999998665554 445554444433
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=5.4e-10 Score=134.05 Aligned_cols=102 Identities=19% Similarity=0.276 Sum_probs=80.9
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCC--CcceeeeeeecC-CCCCccce-eEEEE-eecCccCCCeEEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDL--HKRKYKTGVKWK-TLNPIFNE-EFAIE-TKITELSKQTLVITVW 702 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~--~k~k~KT~v~kk-TlNP~wNE-tF~F~-V~~~dL~~~~L~ItV~ 702 (754)
..|.|.|+.|++|+.. .+||||+|.+.+.. ...++||+++++ ++||+||| +|.|. |...++ ..|.|.||
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~ 798 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF 798 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence 3689999999999753 58999999997532 223689999876 59999999 69998 755554 48999999
Q ss_pred EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcc
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ 740 (754)
|+| |+|||.+.|++.....++.| ..|+..-+.+
T Consensus 799 D~d----ddfiG~~~lpL~~L~~GyR~-vpL~~~~g~~ 831 (885)
T 3ohm_B 799 EEG----GKFVGHRILPVSAIRSGYHY-VCLRNEANQP 831 (885)
T ss_dssp ETT----TEEEEEEEEETTTCCCEEEE-EEEECTTSCE
T ss_pred cCC----ccEEeeEEEEHHHcCCCceE-EEecCCCCCc
Confidence 987 89999999999987777665 4565555554
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.97 E-value=6.7e-10 Score=132.51 Aligned_cols=104 Identities=14% Similarity=0.280 Sum_probs=83.0
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCc---ceeeeeeecC-CCCCcccee-EEEE-eecCccCCCeEEEEE
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK---RKYKTGVKWK-TLNPIFNEE-FAIE-TKITELSKQTLVITV 701 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k---~k~KT~v~kk-TlNP~wNEt-F~F~-V~~~dL~~~~L~ItV 701 (754)
+.|.|.|+.|++|+.. .+||||+|.+.+.... .++||+++++ ++||+|||+ |.|. |...++ ..|.|.|
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V 723 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV 723 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence 5799999999999753 5899999999753221 4789999886 599999998 9998 765555 5899999
Q ss_pred EEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 702 WDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 702 ~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
||++ |+|||.+.|+++....++.| ..|+..-|.+..
T Consensus 724 ~D~d----ddfiG~~~ipL~~L~~GyR~-vpL~~~~g~~~~ 759 (816)
T 3qr0_A 724 SEEN----GKFIGHRVMPLDGIKPGYRH-VPLRNESNRPLG 759 (816)
T ss_dssp EETT----SCEEEEEEEESTTCCCEEEE-EEEECTTSCEEE
T ss_pred EecC----CCeeeEEEEEHHHcCCcceE-EEEeCCCCCCCC
Confidence 9985 79999999999987777765 456655555543
|
| >3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.8e-09 Score=126.74 Aligned_cols=117 Identities=20% Similarity=0.283 Sum_probs=85.3
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEeeeecC-CCCCeece-eEEEeeeeccccCcceEEEEEe
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKTCLR-TINPEFHE-KLTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTkvi~~-TlNP~WnE-~f~F~~I~~~el~~~~L~~sV~ 561 (754)
..|.|+|+.|++|+.. .+||||+|.+.+.. ....+++|+++.+ ++||+||| +|.|..|...++ ..|+|.||
T Consensus 725 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pel--a~Lrf~V~ 798 (885)
T 3ohm_B 725 NALRVKVISGQFLSDR----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTL--ASLRIAAF 798 (885)
T ss_dssp EEEEEEEEEEESCCSS----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGG--CEEEEEEE
T ss_pred eEEEEEEEEeccCccc----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCc--CEEEEEEE
Confidence 3699999999999853 58999999997522 1123579999876 59999999 699954554544 47999999
Q ss_pred eCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 562 DDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 562 D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
|+| ++|||++.|||..|..+ ...++|.... ...-..|.|.|.+.+.
T Consensus 799 D~d---ddfiG~~~lpL~~L~~G---yR~vpL~~~~-----------g~~l~~atLfv~i~~~ 844 (885)
T 3ohm_B 799 EEG---GKFVGHRILPVSAIRSG---YHYVCLRNEA-----------NQPLCLPALLIYTEAS 844 (885)
T ss_dssp ETT---TEEEEEEEEETTTCCCE---EEEEEEECTT-----------SCEEEEEEEEEEEEEE
T ss_pred cCC---ccEEeeEEEEHHHcCCC---ceEEEecCCC-----------CCccCceEEEEEEEEE
Confidence 987 69999999999999764 2234453210 0123467888777664
|
| >3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A | Back alignment and structure |
|---|
Probab=98.91 E-value=5.1e-09 Score=124.97 Aligned_cols=91 Identities=21% Similarity=0.452 Sum_probs=74.0
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCc--eEEEeeeecC-CCCCeecee-EEEeeeeccccCcceEEEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS--HRLRTKTCLR-TINPEFHEK-LTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~--~~~rTkvi~~-TlNP~WnE~-f~F~~I~~~el~~~~L~~sV 560 (754)
..|.|+|+.|++|+.. .+||||+|.+.+..... .+++|+++.+ ++||+|||+ |.|..|...++ ..|+|.|
T Consensus 650 ~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pel--a~Lrf~V 723 (816)
T 3qr0_A 650 GTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDL--AVVRIIV 723 (816)
T ss_dssp EEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGG--CEEEEEE
T ss_pred eEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCc--cEEEEEE
Confidence 5799999999999853 58999999997532222 5789999886 699999998 99953555555 5899999
Q ss_pred eeCCCCCCccceeeeecCcccCCC
Q psy7848 561 LDDDKYGHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~dfLGev~I~L~~L~~~ 584 (754)
||++ ++|||++.|||..|..+
T Consensus 724 ~D~d---ddfiG~~~ipL~~L~~G 744 (816)
T 3qr0_A 724 SEEN---GKFIGHRVMPLDGIKPG 744 (816)
T ss_dssp EETT---SCEEEEEEEESTTCCCE
T ss_pred EecC---CCeeeEEEEEHHHcCCc
Confidence 9985 58999999999999764
|
| >2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B | Back alignment and structure |
|---|
Probab=98.88 E-value=6.6e-09 Score=124.33 Aligned_cols=91 Identities=26% Similarity=0.468 Sum_probs=72.7
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEee-eec-CCCCCeece-eEEEeeeeccccCcceEEEEE
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTK-TCL-RTINPEFHE-KLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTk-vi~-~TlNP~WnE-~f~F~~I~~~el~~~~L~~sV 560 (754)
+.|.|+|+.|++|+. +.+||||+|.+.+.. ....++||+ ++. +++||+||| +|.|..|...++ ..|+|.|
T Consensus 678 ~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el--~~Lr~~V 751 (799)
T 2zkm_X 678 TTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAV 751 (799)
T ss_dssp EEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEE
T ss_pred eeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCc--cEEEEEE
Confidence 579999999999985 468999999996522 112468999 776 469999999 699943555555 4899999
Q ss_pred eeCCCCCCccceeeeecCcccCCC
Q psy7848 561 LDDDKYGHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 561 ~D~d~~g~dfLGev~I~L~~L~~~ 584 (754)
||+| ++|||++.|||..|..+
T Consensus 752 ~D~d---~d~iG~~~ipl~~L~~G 772 (799)
T 2zkm_X 752 MEEG---NKFLGHRIIPINALNSG 772 (799)
T ss_dssp EETT---TEEEEEEEEEGGGBCCE
T ss_pred EEeC---CCccceEeeehhhcCCC
Confidence 9997 59999999999999754
|
| >2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C | Back alignment and structure |
|---|
Probab=98.78 E-value=1.9e-09 Score=84.56 Aligned_cols=55 Identities=22% Similarity=0.637 Sum_probs=49.4
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETRE 197 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~re 197 (754)
....|.+|.++.+ .++.|+.|.+|+.++|.+||.+.+ ...+..+|.|++|++++|
T Consensus 8 d~~~C~iC~KTKF--------ADG~Gh~C~yCk~r~CaRCGg~v~-lr~~k~~WvC~lC~k~qe 62 (62)
T 2a20_A 8 DAPTCGICHKTKF--------ADGCGHNCSYCQTKFCARCGGRVS-LRSNKVMWVCNLCRKQQE 62 (62)
T ss_dssp CCCCCSSSSCSCC--------CSSCCEEBTTTCCEECTTSEEEEE-SSTTCEEEEEHHHHHHTC
T ss_pred Ccchhhhhcccee--------ccCCCccccccCCeeecccCCEee-ecCCeEEEEehhhhhccC
Confidence 4589999999998 999999999999999999999997 344677999999999875
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=6.2e-07 Score=83.56 Aligned_cols=113 Identities=14% Similarity=0.224 Sum_probs=79.4
Q ss_pred CEEEEEEEEecCCCCCC-CCCCCCcEEEEEEeCCCCCceEEEe-eeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 485 CSLHVTLHRAKGLRAMD-IHGTSDPFCKLNLVPLTKTSHRLRT-KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d-~~g~sDPYVkv~Llp~~~~~~~~rT-kvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.-|+|.+.++.-.+.+. .....||||.|.+.... .....+| .++.+|..|+|||.|.-+ |. ..+.|+|.|+|
T Consensus 10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~-~te~gqtl~~KkkT~~P~Wne~Fd~~-V~----~Gr~l~i~Vfh 83 (138)
T 2enj_A 10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYV-ESENGQMYIQKKPTMYPPWDSTFDAH-IN----KGRVMQIIVKG 83 (138)
T ss_dssp CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEE-EETTEEEEEEEEEEECCCSSSEEEEC-CC----SSCEEEEEEEC
T ss_pred cceEEEeeccccCCCCCcccccCCceEEEEeeeee-eccCceeecccCCCCCccccceEeee-EE----CCeEEEEEEEc
Confidence 34666666655433332 23468999999985310 0122667 667789999999999863 32 24899999997
Q ss_pred CCCCCCccceeeeecCcccC-----CCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 563 DDKYGHDFLGEARFPLNRLR-----PHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 563 ~d~~g~dfLGev~I~L~~L~-----~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
... +||..+.|++.+|. .+...++|+.| +..|+|++.+.|.
T Consensus 84 ~a~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdL------------------eP~Gkl~v~i~~~ 129 (138)
T 2enj_A 84 KNV---DLISETTVELYSLAERCRKNNGKTEIWLEL------------------KPQGRMLMNARYF 129 (138)
T ss_dssp SSC---SCCEEEEEESHHHHHHHHHTTTCEEEEEEC------------------BSSCEEEEEEEEC
T ss_pred CCC---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------------ccCcEEEEEEEEE
Confidence 555 89999999999997 33344677666 3589999999885
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.49 E-value=7e-07 Score=82.15 Aligned_cols=113 Identities=13% Similarity=0.230 Sum_probs=79.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEe-eeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRT-KTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDD 563 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rT-kvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~ 563 (754)
.-|+|.+.++.--+.+......||||.|.+..... ....+| .+..+|..|+|||.|.-+ |. ..+.|+|.|+|.
T Consensus 6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~-~e~g~t~~~K~kT~~P~Wne~Fd~~-V~----~Gr~l~i~Vfh~ 79 (126)
T 1yrk_A 6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALS-TERGKTLVQKKPTMYPEWKSTFDAH-IY----EGRVIQIVLMRA 79 (126)
T ss_dssp CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEE-ETTEEEEECCSCCBCCCTTCEEEEE-CC----TTCEEEEEEEEE
T ss_pred ccEEeeeccccccccCCccccCCceEEEEeeeeEE-cccceeecccCCCCCcCccceEEee-ee----CCEEEEEEEEcC
Confidence 45777776654322222334689999999853110 112355 667889999999999863 33 248999999976
Q ss_pred CCCCCccceeeeecCcccCC-----CCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 564 DKYGHDFLGEARFPLNRLRP-----HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 564 d~~g~dfLGev~I~L~~L~~-----~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
.. +||+.+.|++.+|.. +...++|+.| +..|+|++.+.|.
T Consensus 80 a~---~fvAn~tV~~edL~~~c~~~~g~~e~WvdL------------------eP~Gkl~~~i~~~ 124 (126)
T 1yrk_A 80 AE---EPVSEVTVGVSVLAERCKKNNGKAEFWLDL------------------QPQAKVLMSVQYF 124 (126)
T ss_dssp TT---EEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------------BSSCEEEEEEEEE
T ss_pred CC---CeeeEEEEEHHHHHhhhccCCCceEEEEec------------------ccCcEEEEEEEEe
Confidence 65 999999999999973 3344567666 4589999998875
|
| >1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A | Back alignment and structure |
|---|
Probab=98.23 E-value=3.2e-06 Score=77.81 Aligned_cols=104 Identities=14% Similarity=0.105 Sum_probs=70.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCCCCcceeee-eeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT-GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT-~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
.|+|.+.++.--.-+......||||.|.+.........+| ..+++|..|+||+.|.-.|. ....|.|.|++...
T Consensus 7 flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~----~Gr~l~i~Vfh~a~- 81 (126)
T 1yrk_A 7 FLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY----EGRVIQIVLMRAAE- 81 (126)
T ss_dssp EEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC----TTCEEEEEEEEETT-
T ss_pred cEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee----CCEEEEEEEEcCCC-
Confidence 3455554433211122334689999999842110013365 77889999999999999986 35899999996544
Q ss_pred CCCceeEEEEEecCCCCchhhhHHhhhcC---CCcceeeEEeecCC
Q psy7848 708 KSNDYLGCLELCCNSKGDRLRHWVDMMKY---PDHKHEGIHNLSIK 750 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s~ge~~~hW~~ll~~---P~~~ie~Wh~L~~~ 750 (754)
+|+..|.|++. +|+++ .+...+.|..|+|.
T Consensus 82 ---~fvAn~tV~~e----------dL~~~c~~~~g~~e~WvdLeP~ 114 (126)
T 1yrk_A 82 ---EPVSEVTVGVS----------VLAERCKKNNGKAEFWLDLQPQ 114 (126)
T ss_dssp ---EEEEEEEEEHH----------HHHHHHHTTTTEEEEEEECBSS
T ss_pred ---CeeeEEEEEHH----------HHHhhhccCCCceEEEEecccC
Confidence 99999999986 34433 45677899888874
|
| >2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.6e-06 Score=78.42 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=70.7
Q ss_pred ceeeccccccccccCC-CCCCCCceEEEEecCCCCcceeee-eeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccC
Q psy7848 629 ALIVNLIKCTNLIPMD-SNGFSDPFIKLYLKPDLHKRKYKT-GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDY 706 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d-~~G~sDPYVKV~L~~~~~k~k~KT-~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~ 706 (754)
.|+|.+.+..-.+-+. .....||||.|.+...-.....+| ..+++|..|+||+.|.-.|. ....|.|.|++...
T Consensus 11 flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~----~Gr~l~i~Vfh~a~ 86 (138)
T 2enj_A 11 FLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN----KGRVMQIIVKGKNV 86 (138)
T ss_dssp CEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC----SSCEEEEEEECSSC
T ss_pred ceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE----CCeEEEEEEEcCCC
Confidence 4455554443322222 233689999999842110013677 77888999999999988886 35889999995433
Q ss_pred CCCCceeEEEEEecCCCCchhhhHHhhhcC---CCcceeeEEeecCC
Q psy7848 707 GKSNDYLGCLELCCNSKGDRLRHWVDMMKY---PDHKHEGIHNLSIK 750 (754)
Q Consensus 707 ~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~---P~~~ie~Wh~L~~~ 750 (754)
+||..|.|.+. +|+++ .+...+-|..|+|.
T Consensus 87 ----~fVAn~tV~~e----------dL~~~ck~~~g~~e~WvdLeP~ 119 (138)
T 2enj_A 87 ----DLISETTVELY----------SLAERCRKNNGKTEIWLELKPQ 119 (138)
T ss_dssp ----SCCEEEEEESH----------HHHHHHHHTTTCEEEEEECBSS
T ss_pred ----CeeeEEEEEHH----------HHHhhhccCCCceEEEEecccC
Confidence 89999999987 34433 35677888888773
|
| >1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.006 Score=56.43 Aligned_cols=54 Identities=24% Similarity=0.660 Sum_probs=43.0
Q ss_pred cccccccccccCCCccccccccCCCCcccccccccccccccccccc-CCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS-ASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~-~~~~~~~WlC~vC~~~ 195 (754)
....|..|+..|+ +..+.+-|..|++-||..|...... .....+.-+|..|...
T Consensus 68 ~~~~C~~C~~~Fs--------~~~RrHHCR~CG~vfC~~Cs~~~~~~p~~~~p~RVC~~C~~~ 122 (125)
T 1joc_A 68 EVQNCMACGKGFS--------VTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFND 122 (125)
T ss_dssp GCCBCTTTCCBCC--------SSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHH
T ss_pred CCCCCcCcCCccc--------cccccccCCCCCeEEChHHhCCccccCCCCCCCEeCHHHHHH
Confidence 3478999999999 5567999999999999999876521 1224678999999864
|
| >1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.019 Score=47.96 Aligned_cols=55 Identities=31% Similarity=0.621 Sum_probs=42.5
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccc---ccCCCCCCceeeccchhhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES---VSASKKENIWLCKICAETRE 197 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~---~~~~~~~~~WlC~vC~~~re 197 (754)
...|..|++.|+ +..+.+-|..|++-+|.+|.... +..+..++.-+|..|...-+
T Consensus 11 ~~~C~~C~~~F~--------~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l~ 68 (73)
T 1vfy_A 11 SDACMICSKKFS--------LLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYE 68 (73)
T ss_dssp CSBCTTTCCBCB--------TTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHH
T ss_pred CCcccCCCCccC--------CccccccCCCCCEEEcccccCCeEEcccCCCCCCCEECHHHHHHHH
Confidence 368999999999 55779999999999999998643 21111356799999987654
|
| >2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.031 Score=47.73 Aligned_cols=54 Identities=22% Similarity=0.568 Sum_probs=43.0
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccc-cCCCCCCceeeccchhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV-SASKKENIWLCKICAETR 196 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~-~~~~~~~~WlC~vC~~~r 196 (754)
...|..|++.|+ +..+.+-|..|++-+|..|..... ......+.-+|..|...-
T Consensus 19 ~~~C~~C~~~Fs--------~~~RrHHCR~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 73 (82)
T 2yw8_A 19 ATHCRQCEKEFS--------ISRRKHHCRNCGHIFCNTCSSNELALPSYPKPVRVCDSCHTLL 73 (82)
T ss_dssp CCBCTTTCCBCB--------TTBCCEECTTTCCEECSGGGCEEECCTTCSSCEEECHHHHHHT
T ss_pred CCcccCcCCccc--------CccccccCCCCCCEEChHHhCCeeecCCCCCcCEECHHHHHHH
Confidence 478999999999 566799999999999999987542 112246789999998753
|
| >1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.028 Score=48.16 Aligned_cols=55 Identities=24% Similarity=0.463 Sum_probs=42.5
Q ss_pred cccccccccccCCCccccccccCCCCcccccccccccccccccc---ccCCCCCCceeeccchhhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES---VSASKKENIWLCKICAETR 196 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~---~~~~~~~~~WlC~vC~~~r 196 (754)
....|..|++.|+ +..+.+-|..|.+-||.+|.... +......+.-+|..|...-
T Consensus 20 ~~~~C~~C~~~Fs--------~~~RrHHCR~CG~v~C~~Cs~~~~~lp~~~~~~~~RVC~~C~~~l 77 (84)
T 1z2q_A 20 DAPACNGCGCVFT--------TTVRRHHCRNCGYVLCGDCSRHRAAIPMRGITEPERVCDACYLAL 77 (84)
T ss_dssp TCCBCTTTCCBCC--------TTSCCEECTTTCCEECTGGGCCEEEETTTTEEEEEECCHHHHHHH
T ss_pred CCCCCcCcCCccc--------cchhcccccCCCcEEChHHhCCeEeccCCCCCCCCEECHHHHHHH
Confidence 3578999999999 55779999999999999998764 2111135578999998754
|
| >1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1 | Back alignment and structure |
|---|
Probab=93.26 E-value=0.027 Score=51.63 Aligned_cols=49 Identities=29% Similarity=0.718 Sum_probs=39.3
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETR 196 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~r 196 (754)
...|..|+..|+ +..+.+.|..|++-+|.+|..... ...-+|..|....
T Consensus 19 ~~~C~~C~~~Fs--------~~~RkHHCR~CG~ifC~~Cs~~~~-----~~vRVC~~C~~~~ 67 (120)
T 1y02_A 19 EPSCKSCGAHFA--------NTARKQTCLDCKKNFCMTCSSQVG-----NGPRLCLLCQRFR 67 (120)
T ss_dssp -CCCTTTCCCCS--------SGGGCEECTTTCCEECGGGEEC---------CCEEHHHHHHH
T ss_pred cCcccCcCCccc--------cccccccCCCCCCeeCHHHhCCCC-----CCceECHHHHHHH
Confidence 478999999999 456799999999999999988764 3588999998763
|
| >3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.036 Score=48.18 Aligned_cols=54 Identities=26% Similarity=0.548 Sum_probs=42.4
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccccc-CCCCCCceeeccchhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS-ASKKENIWLCKICAETR 196 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~-~~~~~~~WlC~vC~~~r 196 (754)
...|..|++.|+ +..+.+.|..|+.-||..|...... .....+.-+|..|...-
T Consensus 20 ~~~C~~C~~~F~--------~~~RrhhCr~CG~v~C~~Cs~~~~~l~~~~~~~RVC~~C~~~l 74 (90)
T 3t7l_A 20 APNCMNCQVKFT--------FTKRRHHCRACGKVFCGVCCNRKCKLQYLEKEARVCVVCYETI 74 (90)
T ss_dssp CCBCTTTCCBCC--------SSSCCEECTTTCCEECGGGSCEEEEETTTTEEEEECHHHHHHH
T ss_pred CCcCcCCCCccc--------chhhCccccCCCCEECCcccCCeeecCCCCCCCeECHHHHHHH
Confidence 478999999999 5567999999999999999887531 11124578999998754
|
| >1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.053 Score=46.93 Aligned_cols=55 Identities=24% Similarity=0.440 Sum_probs=42.5
Q ss_pred cccccccccccCCCccccccccCCCCcccccccccccccccccccc--CCCCCCceeeccchhhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS--ASKKENIWLCKICAETR 196 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~--~~~~~~~WlC~vC~~~r 196 (754)
....|..|++.|+ +..+.+-|..|.+-+|..|...... .....+.-+|..|....
T Consensus 8 ~~~~C~~C~~~F~--------~~~RrHHCR~CG~vfC~~Cs~~~~~lp~~g~~~~RVC~~C~~~l 64 (88)
T 1wfk_A 8 MESRCYGCAVKFT--------LFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTIL 64 (88)
T ss_dssp CCSBCTTTCCBCC--------SSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHHH
T ss_pred cCCCCcCcCCccc--------CccccccCCCCCCEEChhHcCCceeccccCCCcCEECHHHHHHH
Confidence 4578999999999 5577999999999999999876321 01124678999998754
|
| >3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A* | Back alignment and structure |
|---|
Probab=92.00 E-value=0.042 Score=55.83 Aligned_cols=54 Identities=22% Similarity=0.537 Sum_probs=42.1
Q ss_pred cccccccccccCCCccccccccCCCCcccccccccccccccccccc---CCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS---ASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~---~~~~~~~WlC~vC~~~ 195 (754)
....|..|++.|+ +..+.+-|..|++-+|.+|...... .....+.-+|..|...
T Consensus 163 ~~~~C~~C~~~F~--------~~~RrhHCR~CG~v~C~~Cs~~~~~~p~~~~~~~~RVC~~C~~~ 219 (226)
T 3zyq_A 163 DAEECHRCRVQFG--------VMTRKHHCRACGQIFCGKCSSKYSTIPKFGIEKEVRVCEPCYEQ 219 (226)
T ss_dssp CCSBCTTTCCBCB--------TTBCCEECTTTCCEECTTTCCEEEEEGGGTEEEEEEECHHHHHH
T ss_pred cCCCCcCcCCCCC--------ccccccccCCCcCEeChhhcCCcccCCCCCCCCCCEeCHHHHHH
Confidence 4469999999999 5567999999999999999875421 1113467899999874
|
| >1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.092 Score=44.92 Aligned_cols=54 Identities=26% Similarity=0.640 Sum_probs=41.4
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccccc---CC------CCCCceeeccchhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS---AS------KKENIWLCKICAETR 196 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~---~~------~~~~~WlC~vC~~~r 196 (754)
...|..|++.|+ +..+.+-|..|.+-+|.+|...... .. ...+.=+|..|...-
T Consensus 14 ~~~C~~C~~~F~--------~~~RrHHCR~CG~vfC~~Cs~~~~~l~~~g~~~p~~~~~~~RVC~~C~~~l 76 (84)
T 1x4u_A 14 FGNCTGCSATFS--------VLKKRRSCSNCGNSFCSRCCSFKVPKSSMGATAPEAQRETVFVCASCNQTL 76 (84)
T ss_dssp CSSCSSSCCCCC--------SSSCCEECSSSCCEECTTTSCEEECSTTTSCCCSSCSSCCEEECHHHHHHH
T ss_pred CCcCcCcCCccc--------cchhhhhhcCCCcEEChhhcCCceecccccccCccccCCccEECHHHHHHH
Confidence 478999999999 5577999999999999999865321 00 014577999998753
|
| >1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.054 Score=54.73 Aligned_cols=54 Identities=19% Similarity=0.570 Sum_probs=42.2
Q ss_pred cccccccccccCCCccccccccCCCCcccccccccccccccccccc---CCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS---ASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~---~~~~~~~WlC~vC~~~ 195 (754)
....|..|++.|+ +..+.+-|..|++-||..|...... .+...+.-+|..|...
T Consensus 160 ~~~~C~~C~~~F~--------~~~rrhhCr~CG~v~C~~Cs~~~~~~~~~~~~~~~RvC~~C~~~ 216 (220)
T 1dvp_A 160 DGRVCHRCRVEFT--------FTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAA 216 (220)
T ss_dssp CCSBCTTTCCBCC--------SSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHH
T ss_pred CCCccCCCCCccC--------CcccccccCCcCCEEChHHhCCeeecCcCCCCCCCEeCHHHHHH
Confidence 3589999999999 5667999999999999999876421 1113457899999864
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=90.96 E-value=0.41 Score=58.06 Aligned_cols=93 Identities=9% Similarity=0.098 Sum_probs=67.0
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCCCCc--ceeeeeeecCCCCCccceeEEEEeecCccC-CCeEEEEEEE
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK--RKYKTGVKWKTLNPIFNEEFAIETKITELS-KQTLVITVWD 703 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k--~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~-~~~L~ItV~D 703 (754)
...+.|.|..+.++... ..++-||.+.+..++.. ....|..+....+|.|||.+.|++...+|. +..|.|+||+
T Consensus 216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~ 292 (940)
T 2wxf_A 216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA 292 (940)
T ss_dssp CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence 46888999999988643 45788999988755422 144565555577899999999999888886 4679999999
Q ss_pred ccCC--C----------CCceeEEEEEecCC
Q psy7848 704 KDYG--K----------SNDYLGCLELCCNS 722 (754)
Q Consensus 704 ~d~~--~----------~ddfLG~v~L~l~s 722 (754)
...- + ....||.+.+.+-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd 323 (940)
T 2wxf_A 293 VVEKAKKARSTKKKSKKADCPIAWANLMLFD 323 (940)
T ss_dssp EC----------------CEEEEEEEEESBC
T ss_pred ecCCccCccccccccccccceEEEEeeeEEC
Confidence 6431 1 24589999999764
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.43 E-value=1.7 Score=43.80 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=47.1
Q ss_pred ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC----CCCceeEEEEEecC
Q psy7848 664 RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG----KSNDYLGCLELCCN 721 (754)
Q Consensus 664 ~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~----~~ddfLG~v~L~l~ 721 (754)
..++|.|..++.+|.|+|+|-+.|+.+...+..|.|+++....- ..+..+|-..|+|-
T Consensus 77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~ 138 (220)
T 3l4c_A 77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM 138 (220)
T ss_dssp SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence 38899999999999999999999998888889999999865421 22346788888864
|
| >3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.42 E-value=1.8 Score=43.59 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=46.6
Q ss_pred ceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC----CC-ccceeeeecCcc
Q psy7848 521 SHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY----GH-DFLGEARFPLNR 580 (754)
Q Consensus 521 ~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~----g~-dfLGev~I~L~~ 580 (754)
...++|-|...+.+|.|+|++.+ .++.+.....-|.|++++.... .. ..+|-+.+||-+
T Consensus 76 ~se~~S~V~YHnk~P~w~EtIKi-~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~ 139 (220)
T 3l4c_A 76 ISEYKSVIYYQVKQPRWFETVKV-AIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR 139 (220)
T ss_dssp BSCEECCCCTTCSSCCCCEEEEE-EECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred ceeEEEEEEEcCCCCCceEeEEE-eeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence 35678889999999999999998 5888888889999999986432 11 467777777753
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=89.12 E-value=0.9 Score=55.65 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=66.7
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccCC-CeEEEEEEE
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWD 703 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~-~~L~ItV~D 703 (754)
...+.|.|..+.++... .....+.||.+.+..++..- ...|..+. ..+|.|||.++|+|...+|.. ..|-|+||+
T Consensus 354 ~~~f~v~i~~~~~~n~~-~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~ 431 (1091)
T 3hhm_A 354 NSALRIKILCATYVNVN-IRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS 431 (1091)
T ss_dssp CSEEEEEEEEESCCCCC-CSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred CCCEEEEEEEecCCCCC-ccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence 36788999888887543 33357899999998654332 44555443 457889999999998888864 679999998
Q ss_pred ccCC----CCCceeEEEEEecCC
Q psy7848 704 KDYG----KSNDYLGCLELCCNS 722 (754)
Q Consensus 704 ~d~~----~~ddfLG~v~L~l~s 722 (754)
.... ..+..||.+.+.+-+
T Consensus 432 ~~~~~~~~~~~~~lg~~n~~lfd 454 (1091)
T 3hhm_A 432 VKGRKGAKEEHCPLAWGNINLFD 454 (1091)
T ss_dssp CCCCC-------CCEEEEEESBC
T ss_pred ecCccCcccccceeEEeeeeeEc
Confidence 6542 134579999999764
|
| >3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.27 E-value=0.11 Score=57.24 Aligned_cols=53 Identities=26% Similarity=0.547 Sum_probs=0.0
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccccc--CCCCCCceeeccchhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS--ASKKENIWLCKICAET 195 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~--~~~~~~~WlC~vC~~~ 195 (754)
...|..|+.+|+ +..+.+.|..|++-+|.+|...... .....+.=+|..|...
T Consensus 375 ~~~c~~c~~~f~--------~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~ 429 (434)
T 3mpx_A 375 VMMCMNCGCDFS--------LTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGE 429 (434)
T ss_dssp ---------------------------------------------------------------
T ss_pred CCcCCCcCCCCC--------CcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHH
Confidence 478999999999 4556999999999999999864321 0112456789999864
|
| >2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A | Back alignment and structure |
|---|
Probab=86.77 E-value=0.38 Score=52.60 Aligned_cols=38 Identities=16% Similarity=0.245 Sum_probs=32.9
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccc
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV 178 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~ 178 (754)
....|..|+..|. -+...|..|..|+..||.+|....+
T Consensus 356 ~~t~C~~C~~~~~-------g~~~qg~~C~~C~~~~h~~C~~~~~ 393 (406)
T 2vrw_B 356 ETTSCKACQMLLR-------GTFYQGYRCYRCRAPAHKECLGRVP 393 (406)
T ss_dssp SCCBCTTTCCBCC-------SSSSCEEEETTTCCEECGGGGGGSC
T ss_pred CCCCCccccchhc-------eeCCCCCCCCCCcCccchhhhhhCC
Confidence 4589999999994 2677899999999999999998774
|
| >3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A | Back alignment and structure |
|---|
Probab=86.60 E-value=3.8 Score=50.28 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=67.8
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCC-ceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEE
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKT-SHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILV 560 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~-~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV 560 (754)
-+..|.|+|..+.++... .....+-||.+.|-.+... .....|..+. ..+|.|||.+.| .|...++. ...|.|+|
T Consensus 353 ~~~~f~v~i~~~~~~n~~-~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f-~i~i~dLPr~arL~~tl 429 (1091)
T 3hhm_A 353 INSALRIKILCATYVNVN-IRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNY-DIYIPDLPRAARLCLSI 429 (1091)
T ss_dssp CCSEEEEEEEEESCCCCC-CSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEE-EEEGGGCCTTCEEEEEE
T ss_pred CCCCEEEEEEEecCCCCC-ccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEe-cCccccCChhcEEEEEE
Confidence 457899999999988643 2345678999998654332 2344455443 467889999999 47776664 48899999
Q ss_pred eeCCCC----CC-ccceeeeecCcccC
Q psy7848 561 LDDDKY----GH-DFLGEARFPLNRLR 582 (754)
Q Consensus 561 ~D~d~~----g~-dfLGev~I~L~~L~ 582 (754)
|+.... .. ..||-+.++|-+..
T Consensus 430 ~~~~~~~~~~~~~~~lg~~n~~lfd~~ 456 (1091)
T 3hhm_A 430 CSVKGRKGAKEEHCPLAWGNINLFDYT 456 (1091)
T ss_dssp CCCCCCC-------CCEEEEEESBCTT
T ss_pred EEecCccCcccccceeEEeeeeeEccC
Confidence 987653 12 57999999887643
|
| >2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=85.42 E-value=0.63 Score=57.20 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=65.3
Q ss_pred ccceeeccccccccccCCCCCCCCceEEEEecCCCCcc--eeeeeeecCCCCCccceeEEEEeecCccCC-CeEEEEEEE
Q psy7848 627 KRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR--KYKTGVKWKTLNPIFNEEFAIETKITELSK-QTLVITVWD 703 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~--k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~-~~L~ItV~D 703 (754)
...+.|.|..+.++... ..++-||.+.+..++... ...|..+.-..+|.|||.+.|++...+|.. ..|.|+||+
T Consensus 352 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~ 428 (1092)
T 2y3a_A 352 NNPFQITLVKGNKLNTE---ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYA 428 (1092)
T ss_dssp CSEEEEEECCCCCCCCC---SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCC
T ss_pred CCCEEEEEEEeccCCCC---CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEE
Confidence 46889999999998653 457899998876553221 344655555678999999999998888864 679999998
Q ss_pred cc----CC------------------CCCceeEEEEEecCC
Q psy7848 704 KD----YG------------------KSNDYLGCLELCCNS 722 (754)
Q Consensus 704 ~d----~~------------------~~ddfLG~v~L~l~s 722 (754)
.. .. +.+..||.+.+.+-.
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd 469 (1092)
T 2y3a_A 429 VLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFD 469 (1092)
T ss_dssp C------------------------------CCEEEEESBC
T ss_pred ecCccccccccccccccccccccccccccceeEEEeeeeEC
Confidence 63 10 113489999998654
|
| >4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C | Back alignment and structure |
|---|
Probab=83.36 E-value=0.87 Score=42.14 Aligned_cols=44 Identities=25% Similarity=0.573 Sum_probs=31.4
Q ss_pred ccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
+-.|.+|...|. ..+-..|+|..|..|-.... ...-.|.+|.+.
T Consensus 53 ~~~C~iC~~~~~------------~~~~~~CgH~fc~~Ci~~~~-----~~~~~CP~Cr~~ 96 (138)
T 4ayc_A 53 ELQCIICSEYFI------------EAVTLNCAHSFCSYCINEWM-----KRKIECPICRKD 96 (138)
T ss_dssp HSBCTTTCSBCS------------SEEEETTSCEEEHHHHHHHT-----TTCSBCTTTCCB
T ss_pred cCCCcccCcccC------------CceECCCCCCccHHHHHHHH-----HcCCcCCCCCCc
Confidence 367999998887 22334699999999976543 223459999754
|
| >2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A* | Back alignment and structure |
|---|
Probab=83.35 E-value=3.3 Score=50.27 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=65.1
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCC-CceEEEeeeecCCCCCeeceeEEEeeeeccccC-cceEEEEE
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTK-TSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS-LQSLHILV 560 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~-~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~-~~~L~~sV 560 (754)
-+..|.|+|..+.++... ...+-||.+.+-.++. -.....|..+.-..+|.|||.+.|. |...++. ...|.|+|
T Consensus 215 ~~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~-i~i~dLPr~a~L~~ti 290 (940)
T 2wxf_A 215 LEQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFD-ISVCDLPRMARLCFAL 290 (940)
T ss_dssp CCSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEE-EEGGGCCTTCEEEEEE
T ss_pred cCCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcc-cccccCCcccEEEEEE
Confidence 457899999999998754 3467888888753321 1234456555557789999999994 7776664 48899999
Q ss_pred eeCCCC--C----------C-ccceeeeecCccc
Q psy7848 561 LDDDKY--G----------H-DFLGEARFPLNRL 581 (754)
Q Consensus 561 ~D~d~~--g----------~-dfLGev~I~L~~L 581 (754)
|+.... + . ..||.+.++|-+-
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~ 324 (940)
T 2wxf_A 291 YAVVEKAKKARSTKKKSKKADCPIAWANLMLFDY 324 (940)
T ss_dssp EEEC----------------CEEEEEEEEESBCT
T ss_pred EEecCCccCccccccccccccceEEEEeeeEECC
Confidence 996332 1 2 5788888887754
|
| >4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X | Back alignment and structure |
|---|
Probab=81.56 E-value=0.68 Score=34.91 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=23.9
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccc
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQK 172 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~ 172 (754)
..|++||++|.. +. +-.-++..|..|..+|=.+
T Consensus 4 Y~C~rCg~~fs~--~e--l~~lP~IrCpyCGyrii~K 36 (48)
T 4ayb_P 4 YRCGKCWKTFTD--EQ--LKVLPGVRCPYCGYKIIFM 36 (48)
T ss_dssp -CCCCTTTTCCC--CC--SCCCSSSCCTTTCCSCEEC
T ss_pred EEeeccCCCccH--HH--HhhCCCcccCccCcEEEEE
Confidence 679999999992 33 2234699999999887444
|
| >1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B | Back alignment and structure |
|---|
Probab=80.07 E-value=0.59 Score=39.24 Aligned_cols=50 Identities=20% Similarity=0.526 Sum_probs=35.8
Q ss_pred cccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~ 195 (754)
.+..|.+|.+++. .-...-..| .|+|.+|..|-.... ......|.+|.+.
T Consensus 10 ~~~~CpICle~~~-------~~d~~~~p~-~CGH~fC~~Cl~~~~----~~~~~~CP~CR~~ 59 (78)
T 1e4u_A 10 DPVECPLCMEPLE-------IDDINFFPC-TCGYQICRFCWHRIR----TDENGLCPACRKP 59 (78)
T ss_dssp CCCBCTTTCCBCC-------TTTTTCCSS-TTSCCCCHHHHHHHT----TSSCSBCTTTCCB
T ss_pred cCCcCCccCccCc-------ccccccccc-CCCCCcCHHHHHHHH----hcCCCCCCCCCCc
Confidence 4579999999886 222222334 799999999987764 1346789999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 754 | ||||
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 1e-31 | |
| d1w15a_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi | 3e-22 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 5e-30 | |
| d2cm5a1 | 137 | b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat ( | 3e-19 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 7e-27 | |
| d1uowa_ | 157 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 9e-22 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-26 | |
| d2bwqa1 | 125 | b.7.1.2 (A:729-853) Regulating synaptic membrane e | 1e-22 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 2e-25 | |
| d1rsya_ | 143 | b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu | 5e-24 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 5e-24 | |
| d1dqva2 | 145 | b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus | 2e-19 | |
| d1zbdb_ | 124 | g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat | 2e-23 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-22 | |
| d1a25a_ | 132 | b.7.1.2 (A:) C2 domain from protein kinase c (beta | 2e-20 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 2e-21 | |
| d1ugka_ | 138 | b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens | 4e-18 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 7e-19 | |
| d1dqva1 | 130 | b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus | 6e-15 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 1e-18 | |
| d1rh8a_ | 142 | b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax | 2e-17 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 7e-17 | |
| d1wfma_ | 138 | b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie | 1e-13 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 3e-14 | |
| d1rlwa_ | 126 | b.7.1.1 (A:) Domain from cytosolic phospholipase A | 4e-12 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 1e-13 | |
| d1wfja_ | 136 | b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr | 5e-12 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-13 | |
| d1qasa2 | 131 | b.7.1.1 (A:626-756) PI-specific phospholipase C is | 3e-10 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 7e-12 | |
| d2ep6a1 | 126 | b.7.1.1 (A:92-217) Multiple C2 and transmembrane d | 9e-12 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 4e-09 | |
| d2zkmx2 | 122 | b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human | 4e-08 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 6e-09 | |
| d2nq3a1 | 133 | b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc | 1e-06 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 6e-09 | |
| d1bdya_ | 123 | b.7.1.1 (A:) Domain from protein kinase C delta {R | 2e-06 | |
| d2cjta1 | 128 | b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no | 3e-08 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 1e-06 | |
| d1gmia_ | 136 | b.7.1.1 (A:) Domain from protein kinase C epsilon | 4e-06 | |
| d1y02a2 | 51 | g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger pro | 0.003 |
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 117 bits (295), Expect = 1e-31
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWK 673
G++ ++LC+ + L V ++K +L D +G SDP++K+ L + K KT VK
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
T N +FNE F + L + ++ V D + G N+ +G L L ++G HW ++
Sbjct: 62 TPNAVFNELFVFDIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEI 121
Query: 734 MKYPDHKHEGIHNL 747
+P + H L
Sbjct: 122 CDFPRRQIAKWHML 135
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 90.9 bits (225), Expect = 3e-22
Identities = 31/131 (23%), Positives = 55/131 (41%), Gaps = 2/131 (1%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G + +++ Y STT +L V + +A+ L D+ G SDP+ K+NL K + +T
Sbjct: 2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKC 61
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 590
T N F+E F + L S+ LVLD ++ ++ +G
Sbjct: 62 TPNAVFNELFVF-DIPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKE 120
Query: 591 LNLCKHYPVPR 601
+ + +
Sbjct: 121 ICDFPRRQIAK 131
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 113 bits (283), Expect = 5e-30
Identities = 70/134 (52%), Positives = 99/134 (73%), Gaps = 1/134 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD-LHKRKYKTGVKWK 673
GKI ++L +ST++ LIV +I+C +L MD+NG+SDPF+KL+LKPD K K+KT +K K
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
TLNP FNEEF + K ++L+K++L I+VWD D GKSNDY+G +L ++KG+RL+HW +
Sbjct: 62 TLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYEC 121
Query: 734 MKYPDHKHEGIHNL 747
+K D K E H L
Sbjct: 122 LKNKDKKIERWHQL 135
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 82.6 bits (203), Expect = 3e-19
Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 2/131 (1%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G I +++ Y + L V + R L AMD +G SDPF KL L P + +T+ +
Sbjct: 2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKK 61
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 590
T+NPEF+E+ + + +DL+ +SL I V D D +D++G + ++ +
Sbjct: 62 TLNPEFNEEFFY-DIKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYE 120
Query: 591 LNLCKHYPVPR 601
K + R
Sbjct: 121 CLKNKDKKIER 131
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 104 bits (261), Expect = 7e-27
Identities = 48/134 (35%), Positives = 70/134 (52%), Gaps = 1/134 (0%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKY-KTGVKWK 673
G I +L + L V +++ NL MD G SDP++K++L + + K KT +K
Sbjct: 12 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKN 71
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDM 733
TLNP +NE F+ E ++ K +V+TV D D ND +G + + NS G LRHW DM
Sbjct: 72 TLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDM 131
Query: 734 MKYPDHKHEGIHNL 747
+ P H L
Sbjct: 132 LANPRRPIAQWHTL 145
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 90.3 bits (223), Expect = 9e-22
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 2/133 (1%)
Query: 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTC 529
LG I ++ Y T L V + AK L+ MD+ G SDP+ K++L+ K + +T
Sbjct: 10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIK 69
Query: 530 LRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 588
T+NP ++E +F V + + + VLD DK G +D +G+ N +
Sbjct: 70 KNTLNPYYNESFSFE-VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHW 128
Query: 589 LCLNLCKHYPVPR 601
+ P+ +
Sbjct: 129 SDMLANPRRPIAQ 141
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (256), Expect = 1e-26
Identities = 26/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G + + + +D L VT+ AK L + + +P+ K+ +P ++ RTKT +
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG---HDFLGEARFPLNRL 581
T+ P++++ + V + + L I + D + +FLGE L
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.1 bits (228), Expect = 1e-22
Identities = 30/123 (24%), Positives = 56/123 (45%), Gaps = 5/123 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRK-YKTGVKWK 673
G++ + L F LIV ++ +L + +P++K+Y PD + +T K
Sbjct: 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKK 60
Query: 674 TLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGK--SNDYLGCLELCCNS-KGDRLRH 729
TL P +N+ F E ++ L IT+WD+ + +++LG + + + D H
Sbjct: 61 TLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLDDEPH 120
Query: 730 WVD 732
W
Sbjct: 121 WYK 123
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 100 bits (249), Expect = 2e-25
Identities = 44/127 (34%), Positives = 74/127 (58%), Gaps = 3/127 (2%)
Query: 609 EECWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKT 668
+E + GK+ +L + + L+V +I+ L +D G SDP++K++L PD K+K++T
Sbjct: 15 KEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-KKKKFET 73
Query: 669 GVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDR 726
V KTLNP+FNE+F + +EL +TLV+ V+D D +D +G ++ N+ G
Sbjct: 74 KVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHV 133
Query: 727 LRHWVDM 733
W D+
Sbjct: 134 TEEWRDL 140
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 96.4 bits (239), Expect = 5e-24
Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 4/130 (3%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
+ + LG ++ ++ YD L V + +A L A+D+ GTSDP+ K+ L+P K
Sbjct: 14 PKEEEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKF-- 71
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 583
TK +T+NP F+E+ TF V ++L ++L + V D D++ HD +GE + P+N +
Sbjct: 72 ETKVHRKTLNPVFNEQFTF-KVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDF 130
Query: 584 HISRDLCLNL 593
+ +L
Sbjct: 131 GHVTEEWRDL 140
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 96.4 bits (239), Expect = 5e-24
Identities = 42/136 (30%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 673
G++ +LC+ L V +IK +NL MD GFSDP++K L +K KT +K
Sbjct: 7 GELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKN 66
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDR-LRHWVD 732
TLNP +NE + + L I V D D N+ +G + + HW +
Sbjct: 67 TLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAE 126
Query: 733 MMKYPDHKHEGIHNLS 748
M+ P E H L
Sbjct: 127 MLANPRKPVEHWHQLV 142
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 83.3 bits (205), Expect = 2e-19
Identities = 36/117 (30%), Positives = 59/117 (50%), Gaps = 2/117 (1%)
Query: 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKT 528
+LG + ++ Y T L VT+ +A L+AMD+ G SDP+ K +L+ + + +T
Sbjct: 4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSI 63
Query: 529 CLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPH 584
T+NP ++E L F V+ + L I V+D D G ++ +G R PH
Sbjct: 64 KKNTLNPTYNEALVF-DVAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119
|
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: Effector domain of rabphilin-3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 94.0 bits (233), Expect = 2e-23
Identities = 55/123 (44%), Positives = 78/123 (63%), Gaps = 10/123 (8%)
Query: 86 EPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKF 145
E L E+E I VI RAE ++ +EQER+GRLV+R++ M++NV G + C LCG++
Sbjct: 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAG--DGVNRCILCGEQL 58
Query: 146 SPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAW 205
+ +VC DC+ VC KCG+E+ S ++ +WLCKIC E RE+WK+S AW
Sbjct: 59 GMLGSA-------SVVCEDCKKNVCTKCGVET-SNNRPHPVWLCKICLEQREVWKRSGAW 110
Query: 206 FFK 208
FFK
Sbjct: 111 FFK 113
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 90.9 bits (225), Expect = 2e-22
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKP-DLHKRKYKTGVKWK 673
G+I++ + LIV + NL+PMD NG SDP++KL L P + K KT
Sbjct: 4 GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61
Query: 674 TLNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS-KGDRLRHWVD 732
+LNP +NE F + K ++ + L + +WD D ND++G L + + + W
Sbjct: 62 SLNPEWNETFRFQLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFK 120
Query: 733 MMKYPDHKH 741
++ + ++
Sbjct: 121 LLSQEEGEY 129
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 85.9 bits (212), Expect = 2e-20
Identities = 37/113 (32%), Positives = 59/113 (52%), Gaps = 5/113 (4%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR 531
G I + D L V + AK L MD +G SDP+ KL L+P K+ + +TKT
Sbjct: 4 GRIYIQAHIDREV--LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKC 61
Query: 532 TINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRP 583
++NPE++E F + E+D + L + + D D +DF+G F ++ L+
Sbjct: 62 SLNPEWNETFRF-QLKESDKD-RRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 88.6 bits (219), Expect = 2e-21
Identities = 37/121 (30%), Positives = 66/121 (54%), Gaps = 4/121 (3%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHR 523
S + LG++ ++ Y+ + V + A+GL AMD TSDP+ K+ ++P K H+
Sbjct: 2 SSGSSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HK 59
Query: 524 LRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLR 582
++T+ +T++P F E TFY + T + +LH +L D++ D +GE PL+ +
Sbjct: 60 VKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIE 119
Query: 583 P 583
Sbjct: 120 L 120
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.4 bits (195), Expect = 4e-18
Identities = 34/130 (26%), Positives = 64/130 (49%), Gaps = 6/130 (4%)
Query: 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGF-SDPFIKLYLKPDLHKRKYKTGVK 671
G +F +L ++ +++A +VN+ + L MD SDP+IK+ + P+ K K KT V
Sbjct: 7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVL 65
Query: 672 WKTLNPIFNEEF-AIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRL 727
KTL+P F+E F T++ + L T+ D +D +G + + + ++
Sbjct: 66 RKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKM 125
Query: 728 RHWVDMMKYP 737
+++ P
Sbjct: 126 LMNREIISGP 135
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.2 bits (199), Expect = 7e-19
Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 5/125 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
G+I L + L+V +++ +L DSNGFSDP++K+YL PD K+K++T V KT
Sbjct: 5 GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKT 63
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK----GDRLRHW 730
LNPIFNE F + EL+++ L +V+D D +D +G + L + W
Sbjct: 64 LNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLW 123
Query: 731 VDMMK 735
D+++
Sbjct: 124 RDILE 128
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 70.0 bits (170), Expect = 6e-15
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 4/119 (3%)
Query: 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL 530
G I + Y + L V + +A L A D +G SDP+ K+ L+P K +TK
Sbjct: 4 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKF--QTKVHR 61
Query: 531 RTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRD 588
+T+NP F+E F SV +L+ + LH V D D++ HD +G+ D
Sbjct: 62 KTLNPIFNETFQF-SVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPD 119
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 81.1 bits (199), Expect = 1e-18
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 12/135 (8%)
Query: 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVP---------LTKTSH 522
G I+L + YD L + + +A+ L D +G SDPF K+ L+P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 523 RLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRL 581
+ RTK +++NPE+++ + + S+S L ++L + V D D++ +DFLGE L+
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 582 RPHISRDLCLNLCKH 596
+ L +
Sbjct: 125 SHLDNTPRWYPLKEQ 139
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 77.6 bits (190), Expect = 2e-17
Identities = 44/132 (33%), Positives = 71/132 (53%), Gaps = 15/132 (11%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH----------KR 664
G+I L + + LI+++++ NL+P D+NG+SDPF+K+YL P +
Sbjct: 7 GEIQLQINYDLGN--LIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEY 64
Query: 665 KYKTGVKWKTLNPIFNEEFAIE-TKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCN 721
K +T K+LNP +N+ + + +L K+TL +TVWD D SND+LG ++L
Sbjct: 65 KRRTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSST 124
Query: 722 SKGDRLRHWVDM 733
S D W +
Sbjct: 125 SHLDNTPRWYPL 136
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 75.7 bits (185), Expect = 7e-17
Identities = 22/123 (17%), Positives = 45/123 (36%), Gaps = 5/123 (4%)
Query: 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKT 674
K+ L + +K L V ++ + +G D +++ + + +T +K +
Sbjct: 13 PKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQ 69
Query: 675 LNPIFNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 732
L+ + E + EL TL +T+ D + G L L S W +
Sbjct: 70 LHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGE 129
Query: 733 MMK 735
+
Sbjct: 130 LKT 132
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.1 bits (160), Expect = 1e-13
Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 6/135 (4%)
Query: 465 SQADTNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRL 524
S + + + YD L VT A + G D + + ++ S
Sbjct: 6 SGSWNQAPKLHYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVAN-RTGSVEA 61
Query: 525 RTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRP 583
+T R ++ + E L ++E +L +L + + D++ GE R L+
Sbjct: 62 QTALKKRQLHTTWEEGLVLP-LAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSV 120
Query: 584 HISRDLCLNLCKHYP 598
+ L P
Sbjct: 121 PLGAAQWGELKTSGP 135
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.8 bits (165), Expect = 3e-14
Identities = 22/110 (20%), Positives = 43/110 (39%), Gaps = 8/110 (7%)
Query: 487 LHVTLHRAKGLR---AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTF 543
V + RA + D+ T DP+ +L + R RT+ INP ++E
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFIST--TPDSRKRTRHFNNDINPVWNE---T 59
Query: 544 YSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNL 593
+ L I ++D + + LG A F ++ ++ +++
Sbjct: 60 FEFILDPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIF 109
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.7 bits (149), Expect = 4e-12
Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 630 LIVNLIKCTNLIP---MDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE 686
V +++ T + D DP+++L++ + +T +NP++NE F
Sbjct: 5 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEFI 63
Query: 687 TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNS--KGDRLRHWVDMMKYPDHKHEGI 744
+ + L IT+ D +Y ++ LG +S G++ + E +
Sbjct: 64 --LDPNQENVLEITLMDANYVM-DETLGTATFTVSSMKVGEKKEVPFIF----NQVTEMV 116
Query: 745 HNLSIKPLSS 754
+S++ SS
Sbjct: 117 LEMSLEVASS 126
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 66.7 bits (162), Expect = 1e-13
Identities = 37/138 (26%), Positives = 51/138 (36%), Gaps = 22/138 (15%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V L AKGL D DP+ +L + S PE++E F +V
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS----NVAEGMGTTPEWNETFIF-TV 66
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV 605
SE L + D D D +GEA PL + S Y V ++EE
Sbjct: 67 SEGT---TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPP-----TAYNVVKDEEY 118
Query: 606 WGEEECWQHGKIFLTLCF 623
G+I++ L F
Sbjct: 119 --------KGEIWVALSF 128
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 61.7 bits (149), Expect = 5e-12
Identities = 24/124 (19%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V L+ L D DP+++L + + + + P +NE F +
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCR---TQDQKSNVAEGMGTTPEWNETFIFT--V 66
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNS---KGDRLRHWVDMMKYPDHKHEGIHN 746
+E + L ++DKD G +D +G + +G +++K D +++G
Sbjct: 67 SEGT-TELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVK--DEEYKGEIW 123
Query: 747 LSIK 750
+++
Sbjct: 124 VALS 127
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 65.2 bits (158), Expect = 3e-13
Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 626 KKRALIVNLIKCTNL--IPMDSNGFSDPFIKLYLK--PDLHKRKYKTGVKWKTLNPIFNE 681
+ L V +I L + + N DP + + + + + NP ++
Sbjct: 2 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDM 61
Query: 682 EFAIETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVD 732
EF E +T + V D D ND++G + +G R H +
Sbjct: 62 EFEFE--VTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRHVHLLS 112
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 56.7 bits (136), Expect = 3e-10
Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 8/118 (6%)
Query: 487 LHVTLHRAKGLR--AMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTI-NPEFHEKLTF 543
L V + + L + + DP + + + + + +T NP + + F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 544 YSVSETDLSLQSLHILVLDDDKYGHD-FLGEARFPLNRLRPHISRDLCLNLCKHYPVP 600
L + +V D D + F+G++ P N L+ R + L P
Sbjct: 66 EVTVPD---LALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGY-RHVHLLSKNGDQHP 119
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.0 bits (147), Expect = 7e-12
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKI 689
L V ++K +L+ D +G SDPF L L + +T +K LNP +N+ F T
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCLLELG----NDRLQTHTVYKNLNPEWNKVF---TFP 60
Query: 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742
+ L +TV+D+D K D+LG + + S D + + +
Sbjct: 61 IKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAF 113
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.6 bits (146), Expect = 9e-12
Identities = 36/123 (29%), Positives = 50/123 (40%), Gaps = 15/123 (12%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +A L A D G SDPFC L + RL+T T + +NPE+++ TF
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCL-----LELGNDRLQTHTVYKNLNPEWNKVFTF--- 59
Query: 547 SETDLSLQSLHILVLDDDK-YGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEV 605
L + V D+D DFLG+ PL +R L E+
Sbjct: 60 -PIKDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLK-----NKDLEQAF 113
Query: 606 WGE 608
G
Sbjct: 114 KGV 116
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.7 bits (126), Expect = 4e-09
Identities = 21/110 (19%), Positives = 42/110 (38%), Gaps = 14/110 (12%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLK--PDLHKRKYKTG--VKWKTLNPIFNEEFAI 685
L + +I L ++++ L P KR+Y+T ++NP++ EE +
Sbjct: 3 LSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFV 58
Query: 686 ETKITELSKQTLVITVWDKDYGKSNDYLG--CLELCCNSKGDRLRHWVDM 733
KI +L + V ++ N +LG + + + G
Sbjct: 59 FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLCLHSE 104
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (119), Expect = 4e-08
Identities = 26/118 (22%), Positives = 48/118 (40%), Gaps = 12/118 (10%)
Query: 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPL---TKTSHRLRTKTCLRTINPEFHEKLT 542
+L +T+ + L + + ++ L L K +R + +INP + E+
Sbjct: 2 TLSITVISGQFLSERSV----RTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEE-P 56
Query: 543 FYSVSETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVP 600
F L SL + V+++ + FLG P+N L LCL+ + P+
Sbjct: 57 FVFEKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGY-HHLCLHSESNMPLT 110
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 52.8 bits (126), Expect = 6e-09
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 11/105 (10%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L +T+ AK P+ ++ + +K +T+ C T +P++ + LT
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSK-----KTEKCNNTNSPKWKQPLTVIVT 62
Query: 547 SETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLC 590
+ L + V LG A + + L
Sbjct: 63 PVSKLHFR-----VWSHQTLKSDVLLGTAALDIYETLKSNNMKLE 102
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 1e-06
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 625 TKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFA 684
T K L + +I + P++++ + K + T +P + +
Sbjct: 3 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTE----KCNNTNSPKWKQPL- 57
Query: 685 IETKITELSKQTLVITVWDKDYGKSNDYLGCLEL 718
+ L VW KS+ LG L
Sbjct: 58 ---TVIVTPVSKLHFRVWSHQTLKSDVLLGTAAL 88
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.4 bits (125), Expect = 6e-09
Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 16/125 (12%)
Query: 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLH-KRKYKTGVKWKTLNPIFNEEFAIETK 688
+ N + +L + S PF + +K L R K T+ P + F
Sbjct: 7 ISFNSYELGSLQAE--DDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64
Query: 689 ITELSKQTLVITVWDKDYGKSNDY---LGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIH 745
+ + I + ++ + L C + W+D+ +
Sbjct: 65 E----GRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQP------QAKV 114
Query: 746 NLSIK 750
+ ++
Sbjct: 115 LMCVQ 119
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 45.1 bits (106), Expect = 2e-06
Identities = 15/109 (13%), Positives = 34/109 (31%), Gaps = 9/109 (8%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
+ + L+A D S PFC + + T T+ PE+
Sbjct: 7 ISFNSYELGSLQAED--DASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDA--- 61
Query: 547 SETDLSLQSLHILVLDDDKY--GHDFLGEARFPLNRLRPHISRDLCLNL 593
+ + I+++ + +G + + + + L+L
Sbjct: 62 --HIYEGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDL 108
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 50.5 bits (120), Expect = 3e-08
Identities = 16/96 (16%), Positives = 29/96 (30%), Gaps = 13/96 (13%)
Query: 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSV 546
L V + +AK A + + + L + + T R P + + F
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVT-----LKVQNVKSTTIAV-RGSQPSWEQDFMFEIN 54
Query: 547 SETDLSLQSLHILVLDDDKYGHDFLGEARFPLNRLR 582
L + V + +G PL +R
Sbjct: 55 RLDL----GLTVEVWNKGLIWDTMVGTVWIPLRTIR 86
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 46.0 bits (108), Expect = 1e-06
Identities = 28/150 (18%), Positives = 47/150 (31%), Gaps = 37/150 (24%)
Query: 487 LHVTLHRAKGLRAMDIH-----------GTSDPFCKLNLVPLTKTSHRLRTKTCLRTINP 535
L + + A L+ DP+ LN S +T T +T +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN----VDDSRIGQTATKQKTNSP 63
Query: 536 EFHEKLTFYSVSETDLSLQSLHILVLDDDKYG-HDFLGEARFPLNRLRPHISRDLCLNLC 594
+H++ + + L V D G DF+ L + SR
Sbjct: 64 AWHDEFVTDVCNGRKIELA-----VFHDAPIGYDDFVANCTIQFEELLQNGSRHF----- 113
Query: 595 KHYPVPREEEVWGEEECWQHGKIFLTLCFS 624
E W + E GK+++ + S
Sbjct: 114 ---------EDWIDLEP--EGKVYVIIDLS 132
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136 | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Score = 44.9 bits (105), Expect = 4e-06
Identities = 19/121 (15%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 630 LIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPI 678
L + + + +L P DP+I L + + T K KT +P
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQ---TATKQKTNSPA 64
Query: 679 FNEEFAIETKITELSKQTLVITVWDKDYGKSNDYLGC----LELCCNSKGDRLRHWVDMM 734
+++EF + + + + V+ +D++ E + W+D+
Sbjct: 65 WHDEFVTDVCNG----RKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120
Query: 735 K 735
Sbjct: 121 P 121
|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} Length = 51 | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: Rififylin (FYVE-RING finger protein Sakura) species: Human (Homo sapiens) [TaxId: 9606]
Score = 34.6 bits (79), Expect = 0.003
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 13/61 (21%)
Query: 137 ACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETR 196
+C CG F+ + C DC+ C C S+ LC +C R
Sbjct: 2 SCKSCGAHFANTARKQT--------CLDCKKNFCMTC-----SSQVGNGPRLCLLCQRFR 48
Query: 197 E 197
Sbjct: 49 A 49
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 754 | |||
| d1zbdb_ | 124 | Effector domain of rabphilin-3a {Rat (Rattus norve | 99.95 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.95 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.95 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.94 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.94 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.87 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.86 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.85 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.85 | |
| d1rsya_ | 143 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.85 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.84 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.84 | |
| d2bwqa1 | 125 | Regulating synaptic membrane exocytosis protein, r | 99.83 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.83 | |
| d1dqva1 | 130 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.82 | |
| d1ugka_ | 138 | Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960 | 99.82 | |
| d1rh8a_ | 142 | Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.81 | |
| d1a25a_ | 132 | C2 domain from protein kinase c (beta) {Rat (Rattu | 99.8 | |
| d1wfma_ | 138 | Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9 | 99.79 | |
| d2cm5a1 | 137 | C2b-domain of rabphilin {Rat (Rattus norvegicus) [ | 99.79 | |
| d1w15a_ | 138 | Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d1dqva2 | 145 | Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: | 99.79 | |
| d1uowa_ | 157 | Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10 | 99.78 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.74 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.74 | |
| d2ep6a1 | 126 | Multiple C2 and transmembrane domain-containing pr | 99.72 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.67 | |
| d1rlwa_ | 126 | Domain from cytosolic phospholipase A2 {Human (Hom | 99.67 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.66 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.64 | |
| d1gmia_ | 136 | Domain from protein kinase C epsilon {Rat (Rattus | 99.64 | |
| d1wfja_ | 136 | C2 domain protein At1g63220 {Thale cress (Arabidop | 99.62 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.61 | |
| d1qasa2 | 131 | PI-specific phospholipase C isozyme D1 (PLC-D1), C | 99.61 | |
| d2nq3a1 | 133 | E3 ubiquitin-protein ligase Itchy {Human (Homo sap | 99.59 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.55 | |
| d2cjta1 | 128 | Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: | 99.53 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.4 | |
| d1bdya_ | 123 | Domain from protein kinase C delta {Rat (Rattus no | 99.39 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.29 | |
| d2zkmx2 | 122 | Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI | 99.21 | |
| d1y02a2 | 51 | Rififylin (FYVE-RING finger protein Sakura) {Human | 96.95 | |
| d1vfya_ | 67 | vps27p protein {Baker's yeast (Saccharomyces cerev | 95.39 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 94.96 | |
| d1dvpa2 | 72 | Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7 | 94.55 | |
| d1joca1 | 64 | Eea1 {Human (Homo sapiens) [TaxId: 9606]} | 94.55 | |
| d1wfka_ | 88 | Zinc finger FYVE domain containing protein 19 {Mou | 93.53 | |
| d1e7ua2 | 174 | Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa) | 93.14 | |
| d1jm7a_ | 103 | brca1 RING domain {Human (Homo sapiens) [TaxId: 96 | 81.84 |
| >d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: Effector domain of rabphilin-3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=2.4e-29 Score=232.91 Aligned_cols=113 Identities=49% Similarity=1.086 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHHhhHHHhHHHHHHHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCcccccc
Q psy7848 86 EPLDPTEQEKIEEVIKRAEALDYIEQERVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDC 165 (754)
Q Consensus 86 ~~Lt~~E~e~I~~Vl~R~~~l~~~E~~Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C 165 (754)
+.||+||+++|++||+||+++++.|++|+++|+++|+++++++...+ .+.|.+|+++|+ ++++.++.|.+|
T Consensus 1 ~~LT~eE~~~i~~VL~r~~~l~~~E~~rl~~l~~~l~~~~~~~~~~~--~~~C~~C~~~f~-------~~~~~~~~C~~C 71 (124)
T d1zbdb_ 1 EELTDEEKEIINRVIARAEKMETMEQERIGRLVDRLETMRKNVAGDG--VNRCILCGEQLG-------MLGSASVVCEDC 71 (124)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCS--SSBCSSSCCBCS-------TTSCCEEECTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--CCcCcccCCccc-------CCCCCCCcCccC
Confidence 47999999999999999999999999999999999999999976655 499999999999 677789999999
Q ss_pred ccccccccccccccCCCCCCceeeccchhhhhhhhhccccccc
Q psy7848 166 RGGVCQKCGIESVSASKKENIWLCKICAETREMWKKSNAWFFK 208 (754)
Q Consensus 166 ~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~rel~~~sG~Wf~~ 208 (754)
++.||.+|++... ...+.+.|+|.+|++.++++++||+|||+
T Consensus 72 ~~~~C~~C~~~~~-~~~~~~~w~C~~C~k~re~~~~sg~Wf~~ 113 (124)
T d1zbdb_ 72 KKNVCTKCGVETS-NNRPHPVWLCKICLEQREVWKRSGAWFFK 113 (124)
T ss_dssp CCEEETTSEEECC-CSSSSCCEEEHHHHHHHHHHHHTSHHHHT
T ss_pred CcccccCCCCCcc-CCCCCCCEECccCcchHHHHHHccChhhc
Confidence 9999999998875 34456789999999999999999999999
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=6.1e-29 Score=233.95 Aligned_cols=136 Identities=29% Similarity=0.497 Sum_probs=122.6
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|+++|+|.|..+.|.|.|++|+||+.++.++.+||||+|+|.++.... ++||.+++++.||.|||+|.|.+...++
T Consensus 1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~ 80 (138)
T d1w15a_ 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL 80 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHh
Confidence 699999999999999999999999999999999999999999998765443 7899999999999999999999988888
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
....|.|+|||++.++++++||.|.|++.+.+++..||++|+++|++++++||.|..
T Consensus 81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~ 137 (138)
T d1w15a_ 81 EEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 137 (138)
T ss_dssp TTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred CccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence 888999999999999999999999999999999999999999999999999999963
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.95 E-value=3.1e-28 Score=228.13 Aligned_cols=136 Identities=51% Similarity=0.879 Sum_probs=127.1
Q ss_pred cceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCcc
Q psy7848 614 HGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITEL 692 (754)
Q Consensus 614 ~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL 692 (754)
+|+|+++|+|.+..+.|.|.|++|+||+.++.+|.+||||+|+|.++... .++||++++++.||+|||+|.|.|...++
T Consensus 1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l 80 (137)
T d2cm5a1 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDL 80 (137)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHc
Confidence 69999999999999999999999999999999999999999999876544 38899999999999999999999998888
Q ss_pred CCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 693 SKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
....|.|+|||++.++.+++||.|.|++.+.+++..||++|+.+|+.++++||.|+.
T Consensus 81 ~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~~ 137 (137)
T d2cm5a1 81 AKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 137 (137)
T ss_dssp GGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred cccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceeccC
Confidence 889999999999999999999999999999999999999999999999999999973
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=1.4e-27 Score=229.59 Aligned_cols=140 Identities=34% Similarity=0.533 Sum_probs=131.6
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
.+..|+|.++|.|.+..++|.|.|++|+||+..+.++.+||||+|++.+++... ++||++++++.||+|||+|.|.|..
T Consensus 8 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~ 87 (157)
T d1uowa_ 8 LEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87 (157)
T ss_dssp GGCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCG
T ss_pred ceeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecH
Confidence 567999999999999999999999999999999999999999999998765443 7799999999999999999999998
Q ss_pred CccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
.++....|.|+|||++.++++++||.+.|++.+.+.+..||.+|+.+|+.++++||.|+++
T Consensus 88 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~ 148 (157)
T d1uowa_ 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148 (157)
T ss_dssp GGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred HHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence 8998899999999999999999999999999999999999999999999999999999864
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.94 E-value=5.8e-28 Score=228.95 Aligned_cols=140 Identities=30% Similarity=0.467 Sum_probs=129.8
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEEeec
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIETKI 689 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~V~~ 689 (754)
..+.|+|+++|+|.|..+.|.|.|++|+||+..+.+|.+||||+|+|.++.... ++||+++++|.||+|||+|.|.|..
T Consensus 3 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~ 82 (145)
T d1dqva2 3 KADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 82 (145)
T ss_dssp CSCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCS
T ss_pred cCcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEeh
Confidence 467899999999999999999999999999999999999999999998765544 7899999999999999999999988
Q ss_pred CccCCCeEEEEEEEccCCCCCceeEEEEEecCCCC-chhhhHHhhhcCCCcceeeEEeecCC
Q psy7848 690 TELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKG-DRLRHWVDMMKYPDHKHEGIHNLSIK 750 (754)
Q Consensus 690 ~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~g-e~~~hW~~ll~~P~~~ie~Wh~L~~~ 750 (754)
.++....|.|.|||++.++.|++||.+.|++.... ++..||++|+.+|+.++++||.|.++
T Consensus 83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~~~ 144 (145)
T d1dqva2 83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE 144 (145)
T ss_dssp GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECCCC
Confidence 88888999999999999999999999999998754 57899999999999999999999986
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.87 E-value=6.8e-23 Score=190.37 Aligned_cols=109 Identities=39% Similarity=0.621 Sum_probs=100.7
Q ss_pred cccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 612 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 612 ~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
...|+|.++|.|.+..+.|.|.|++|+||+.++.+|.+||||+|++.++. ..++||+++++|.||+|||+|.|.+...+
T Consensus 2 ~p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~-~~~~kT~v~~~t~~P~wne~f~f~v~~~~ 80 (130)
T d1dqva1 2 APCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDR-KKKFQTKVHRKTLNPIFNETFQFSVPLAE 80 (130)
T ss_dssp CSSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTST-TSCEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred CCcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCC-CceEeceeEcCCCCeeeeeEEEEEEchHH
Confidence 35799999999999999999999999999999999999999999998653 45789999999999999999999998888
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCN 721 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~ 721 (754)
+....|.|+|||++.+++|++||.+.|++.
T Consensus 81 ~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~ 110 (130)
T d1dqva1 81 LAQRKLHFSVYDFDRFSRHDLIGQVVLDNL 110 (130)
T ss_dssp GSSCCCEEEEEECCSSSCCCEEEEEECCCT
T ss_pred cCCCeEEEEEEEcCCCCCCceEEEEEECch
Confidence 888899999999999999999999999854
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.86 E-value=4.3e-22 Score=187.79 Aligned_cols=125 Identities=34% Similarity=0.556 Sum_probs=110.8
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|.++|.|.+..+.|.|.|++|+||++++.+|.+||||+|++.++. ..+++|+++++|.||+|||+|.|.|...
T Consensus 17 ~~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~-~~~~kT~~~~~t~~P~wne~f~f~i~~~ 95 (143)
T d1rsya_ 17 EEKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDK-KKKFETKVHRKTLNPVFNEQFTFKVPYS 95 (143)
T ss_dssp -CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTC-CSCEECCCCTTCSSCEEEEEEEECCCHH
T ss_pred hhcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCC-CeeEEEEEeccccCcceeeeeEEEEEee
Confidence 457899999999999999999999999999999999999999999998763 4578999999999999999999999877
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeec
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLS 748 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~ 748 (754)
++....|.|+|||++.++++++||.+.|+|... .++..+++||.|+
T Consensus 96 ~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~------------~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 96 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV------------DFGHVTEEWRDLQ 141 (143)
T ss_dssp HHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGC------------CCSSCEEEEEECB
T ss_pred ccCCceEEEEEEEcCCCCCCcEEEEEEEEchhc------------cCCCCCccEEeCC
Confidence 888889999999999999999999999999864 2355566777775
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=4.6e-22 Score=183.23 Aligned_cols=109 Identities=26% Similarity=0.496 Sum_probs=95.9
Q ss_pred ceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcc-eeeeeeecCCCCCccceeEEEE-eecCcc
Q psy7848 615 GKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKR-KYKTGVKWKTLNPIFNEEFAIE-TKITEL 692 (754)
Q Consensus 615 GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~-k~KT~v~kkTlNP~wNEtF~F~-V~~~dL 692 (754)
|+|+|+|.|.+..++|.|.|++|+||+..+.++.+||||+|+|.++.... ++||++++++.||+|||+|.|. +...++
T Consensus 1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l 80 (125)
T d2bwqa1 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF 80 (125)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence 89999999999999999999999999999999999999999998876554 8999999999999999999997 777788
Q ss_pred CCCeEEEEEEEccCC--CCCceeEEEEEecCCC
Q psy7848 693 SKQTLVITVWDKDYG--KSNDYLGCLELCCNSK 723 (754)
Q Consensus 693 ~~~~L~ItV~D~d~~--~~ddfLG~v~L~l~s~ 723 (754)
....|.|+|||++.+ ..+++||.+.|++...
T Consensus 81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~ 113 (125)
T d2bwqa1 81 RERMLEITLWDQARVREEESEFLGEILIELETA 113 (125)
T ss_dssp GGCEEEEEEEEC-------CEEEEEEEEEGGGC
T ss_pred CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhc
Confidence 888999999999965 4467999999998753
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=6e-22 Score=184.19 Aligned_cols=107 Identities=36% Similarity=0.642 Sum_probs=95.6
Q ss_pred ccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCc
Q psy7848 613 QHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITE 691 (754)
Q Consensus 613 ~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~d 691 (754)
.+|+|.+.+.|. .+.|.|.|++|+||++++.+|.+||||+|+|.++... .+++|+++++|.||+|||+|.|.+...+
T Consensus 2 ~rG~i~l~~~~~--~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~ 79 (132)
T d1a25a_ 2 RRGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESD 79 (132)
T ss_dssp TTCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGG
T ss_pred cccEEEEEEEec--CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccc
Confidence 589999999984 5889999999999999999999999999999876544 4899999999999999999999986443
Q ss_pred cCCCeEEEEEEEccCCCCCceeEEEEEecCC
Q psy7848 692 LSKQTLVITVWDKDYGKSNDYLGCLELCCNS 722 (754)
Q Consensus 692 L~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s 722 (754)
. ...|.|+|||+|.+++|++||.+.|++..
T Consensus 80 ~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~ 109 (132)
T d1a25a_ 80 K-DRRLSVEIWDWDLTSRNDFMGSLSFGISE 109 (132)
T ss_dssp G-GCEEEEEEEECCSSSCCEEEEEEEEEHHH
T ss_pred c-CCEEeEEEEecCCCCCCcEeEEEEEeHHH
Confidence 3 46899999999999999999999999875
|
| >d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=4.3e-21 Score=180.87 Aligned_cols=123 Identities=33% Similarity=0.533 Sum_probs=110.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
..+|+|+|++.|+...+.|.|+|++|+||+.++..|.+||||+|++.++.. ...+|+++++|.||+|||+|.|. +..
T Consensus 18 ~~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~--~~~kT~~~~~t~~P~wne~f~f~-i~~ 94 (143)
T d1rsya_ 18 EKLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKK--KKFETKVHRKTLNPVFNEQFTFK-VPY 94 (143)
T ss_dssp CCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCC--SCEECCCCTTCSSCEEEEEEEEC-CCH
T ss_pred hcceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCC--eeEEEEEeccccCcceeeeeEEE-EEe
Confidence 679999999999999999999999999999999999999999999987654 56899999999999999999994 776
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.++....|+|.|||++.+++ ++||++.|+|.++..+.....|++|+
T Consensus 95 ~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 141 (143)
T d1rsya_ 95 SELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 141 (143)
T ss_dssp HHHTTCEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECB
T ss_pred eccCCceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCC
Confidence 77777899999999999988 89999999999998776666777664
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.84 E-value=5.3e-22 Score=186.36 Aligned_cols=127 Identities=33% Similarity=0.497 Sum_probs=109.3
Q ss_pred cccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCc----------ceeeeeeecCCCCCccce
Q psy7848 612 WQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK----------RKYKTGVKWKTLNPIFNE 681 (754)
Q Consensus 612 ~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k----------~k~KT~v~kkTlNP~wNE 681 (754)
...|+|.+++.|. .+.|.|.|++|+||++++.+|.+||||+|++.++... .++||+++++|+||.|||
T Consensus 4 p~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T d1rh8a_ 4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred CcceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence 4679999999995 5899999999999999999999999999999765432 146899999999999999
Q ss_pred eEEEE-eecCccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCC
Q psy7848 682 EFAIE-TKITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPL 752 (754)
Q Consensus 682 tF~F~-V~~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~ 752 (754)
+|.|. +...++....|.|+|||++.+++|++||.+.|+|.... .+..+++||+|+++.-
T Consensus 82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~------------~~~~~~~W~~L~~~~~ 141 (142)
T d1rh8a_ 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTS------------HLDNTPRWYPLKEQTE 141 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCG------------GGTTCCEEEECBCCCC
T ss_pred EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcC------------CCCCceEEEECcCcCC
Confidence 99998 66667778899999999999999999999999998642 2345678999998764
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=5.3e-21 Score=179.33 Aligned_cols=128 Identities=18% Similarity=0.157 Sum_probs=109.9
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecC
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKIT 690 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~ 690 (754)
....|+|+++|.|.+..+.|.|.|++|+||. ..|.+||||+|+|.++....+++|++++++.||+|||+|.|.|...
T Consensus 9 ~~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~ 85 (138)
T d1wfma_ 9 WNQAPKLHYCLDYDCQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEE 85 (138)
T ss_dssp CSSCCEEEEEEEEETTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTT
T ss_pred CCcCCEEEEEEEECCCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeeh
Confidence 4567999999999999999999999999994 4577999999999887555588999999999999999999999888
Q ss_pred ccCCCeEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecCCCCC
Q psy7848 691 ELSKQTLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSIKPLS 753 (754)
Q Consensus 691 dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~~~~~ 753 (754)
++....|.|+|||++.++.|++||.+.|+|.... .....+.|+.|++...+
T Consensus 86 ~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~------------~~~~~~~W~~L~~~~~~ 136 (138)
T d1wfma_ 86 ELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTS------------VPLGAAQWGELKTSGPS 136 (138)
T ss_dssp SSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSS------------SCTTCCEEEECCCCSCC
T ss_pred hccceEEEEEEeeecccccceeeeEEEEEhHHcc------------CCCCceEeEeCCCCCCC
Confidence 8989999999999999999999999999998642 23345667777666544
|
| >d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Regulating synaptic membrane exocytosis protein, rim2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=1.5e-20 Score=172.90 Aligned_cols=121 Identities=22% Similarity=0.381 Sum_probs=104.1
Q ss_pred eEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecccc
Q psy7848 472 GSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDL 551 (754)
Q Consensus 472 G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el 551 (754)
|+|+|+|.|++..+.|.|+|++|+||+..+..+.+||||+|++.|+.....+++|++++++.||+|||+|.|..+...++
T Consensus 1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l 80 (125)
T d2bwqa1 1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF 80 (125)
T ss_dssp CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence 89999999999999999999999999999999999999999999877667789999999999999999999976788888
Q ss_pred CcceEEEEEeeCCCCC--C-ccceeeeecCcccCCCCccceEeec
Q psy7848 552 SLQSLHILVLDDDKYG--H-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 552 ~~~~L~~sV~D~d~~g--~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
....|.|+|||++.++ + +|||++.|+|.++..... ..|++|
T Consensus 81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~~-~~Wy~L 124 (125)
T d2bwqa1 81 RERMLEITLWDQARVREEESEFLGEILIELETALLDDE-PHWYKL 124 (125)
T ss_dssp GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSSC-EEEEEC
T ss_pred CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCCC-CEEEeC
Confidence 8899999999999764 3 699999999999876533 345544
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=3.6e-20 Score=173.59 Aligned_cols=114 Identities=32% Similarity=0.642 Sum_probs=103.2
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCC-CCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeee
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHG-TSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVS 547 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g-~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~ 547 (754)
...|+|+|+|.|+...+.|.|+|++|+||+.++..+ .+||||+++|++++. ..++|++++++.||.|||+|.|..++
T Consensus 6 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~--~~~kT~v~~~t~nP~wne~f~f~~~~ 83 (138)
T d1ugka_ 6 SGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKK--HKVKTRVLRKTLDPAFDETFTFYGIP 83 (138)
T ss_dssp CCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTC--SEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred CCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCC--EeEeCeeEeCCCCCceeeEEEEeeeC
Confidence 468999999999999999999999999999988665 479999999988654 67899999999999999999997677
Q ss_pred ccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCC
Q psy7848 548 ETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 548 ~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
..++....|+|+|||+|.+++ ++||++.|+|.++...
T Consensus 84 ~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~ 121 (138)
T d1ugka_ 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121 (138)
T ss_dssp STTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCT
T ss_pred HHHcccceEEEEEEECCCCCCCcEEEEEEEEcccccCC
Confidence 788888899999999999987 9999999999998654
|
| >d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=2e-20 Score=173.54 Aligned_cols=108 Identities=32% Similarity=0.501 Sum_probs=98.8
Q ss_pred ceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeecc
Q psy7848 470 NLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSET 549 (754)
Q Consensus 470 ~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~ 549 (754)
.+|+|+|+|.|++..+.|.|+|++|+||+.++..|.+||||+++++++.. .+++|+++.+|.||+|||+|.| .++..
T Consensus 3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~--~~~kT~v~~~t~~P~wne~f~f-~v~~~ 79 (130)
T d1dqva1 3 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRK--KKFQTKVHRKTLNPIFNETFQF-SVPLA 79 (130)
T ss_dssp SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTT--SCEECCCCCSCSSCEEEEEEEE-ECCGG
T ss_pred CcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCC--ceEeceeEcCCCCeeeeeEEEE-EEchH
Confidence 57999999999999999999999999999999999999999999987554 5789999999999999999999 47777
Q ss_pred ccCcceEEEEEeeCCCCCC-ccceeeeecCcc
Q psy7848 550 DLSLQSLHILVLDDDKYGH-DFLGEARFPLNR 580 (754)
Q Consensus 550 el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~ 580 (754)
++....|.|+|||++.+++ ++||++.|++..
T Consensus 80 ~~~~~~L~v~V~d~~~~~~d~~iG~~~i~~~~ 111 (130)
T d1dqva1 80 ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLL 111 (130)
T ss_dssp GGSSCCCEEEEEECCSSSCCCEEEEEECCCTT
T ss_pred HcCCCeEEEEEEEcCCCCCCceEEEEEECchh
Confidence 7878899999999999887 999999998654
|
| >d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=3.6e-20 Score=173.62 Aligned_cols=112 Identities=29% Similarity=0.467 Sum_probs=101.1
Q ss_pred ccccceeEEeeeccccccceeeccccccccccCCCCC-CCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEE-ee
Q psy7848 611 CWQHGKIFLTLCFSTKKRALIVNLIKCTNLIPMDSNG-FSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIE-TK 688 (754)
Q Consensus 611 ~~~~GeL~VsL~y~p~~g~L~V~V~~A~nL~~~d~~G-~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~-V~ 688 (754)
....|+|.++|.|.+..+.|.|.|++|+||+.++..+ .+||||+|+|.++ +..++||++++++.||.|||+|.|. +.
T Consensus 5 ~~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~-~~~~~kT~v~~~t~nP~wne~f~f~~~~ 83 (138)
T d1ugka_ 5 SSGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-KKHKVKTRVLRKTLDPAFDETFTFYGIP 83 (138)
T ss_dssp CCCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT-TCSEEECCCCSSCSSCEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCC-CCEeEeCeeEeCCCCCceeeEEEEeeeC
Confidence 4568999999999999999999999999999988765 4899999999875 3457899999999999999999997 77
Q ss_pred cCccCCCeEEEEEEEccCCCCCceeEEEEEecCCC
Q psy7848 689 ITELSKQTLVITVWDKDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 689 ~~dL~~~~L~ItV~D~d~~~~ddfLG~v~L~l~s~ 723 (754)
..++....|.|+|||++.+++|++||.+.|+|...
T Consensus 84 ~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~ 118 (138)
T d1ugka_ 84 YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGI 118 (138)
T ss_dssp STTGGGCEEEEEEEEECSSCCCCCCEEEEEECTTC
T ss_pred HHHcccceEEEEEEECCCCCCCcEEEEEEEEcccc
Confidence 77888889999999999999999999999999863
|
| >d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Piccolo species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.81 E-value=2.2e-20 Score=175.18 Aligned_cols=124 Identities=30% Similarity=0.452 Sum_probs=107.0
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCc---------eEEEeeeecCCCCCeece
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTS---------HRLRTKTCLRTINPEFHE 539 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~---------~~~rTkvi~~TlNP~WnE 539 (754)
...|+|+|++.|+ .+.|.|+|++|+||+.+|..|.+||||+|++.++.... .+.||++++++.||+|||
T Consensus 4 p~~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne 81 (142)
T d1rh8a_ 4 PITGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81 (142)
T ss_dssp CCCCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEE
T ss_pred CcceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEE
Confidence 4689999999996 68999999999999999999999999999997644321 236899999999999999
Q ss_pred eEEEeeeeccccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeecc
Q psy7848 540 KLTFYSVSETDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLC 594 (754)
Q Consensus 540 ~f~F~~I~~~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~ 594 (754)
.|.|..+...++....|.|.|||+|.+++ +|||++.|+|.++........|++|.
T Consensus 82 ~f~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~ 137 (142)
T d1rh8a_ 82 TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137 (142)
T ss_dssp EEEECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECB
T ss_pred EEEEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECc
Confidence 99997677777888899999999999988 99999999999997766665666654
|
| >d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain from protein kinase c (beta) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.80 E-value=2.4e-19 Score=166.40 Aligned_cols=120 Identities=32% Similarity=0.471 Sum_probs=101.6
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
+.+|+|.+.+.| ..+.|.|+|++|+||+.+|..|.+||||++++.++.....+++|+++.+|.||+|||.|.|. +..
T Consensus 1 ~~rG~i~l~~~~--~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~-v~~ 77 (132)
T d1a25a_ 1 ERRGRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQ-LKE 77 (132)
T ss_dssp CTTCEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEE-CCS
T ss_pred CcccEEEEEEEe--cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEE-eEc
Confidence 358999999999 47899999999999999999999999999999887666678999999999999999999995 443
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeec
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNL 593 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L 593 (754)
.+. ...|.|.|||+|.++. +|||++.|+|.++... ..+.|++|
T Consensus 78 ~~~-~~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L 121 (132)
T d1a25a_ 78 SDK-DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKL 121 (132)
T ss_dssp GGG-GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEEC
T ss_pred ccc-CCEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEEC
Confidence 332 3579999999999987 9999999999998654 33344444
|
| >d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin XIII species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=5.2e-19 Score=165.59 Aligned_cols=122 Identities=19% Similarity=0.232 Sum_probs=107.7
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
...|+|+|+|.|+...+.|.|+|++|++|. ..+.+||||+|+|.++.. ...++|+++.++.||+|||.|.|. +..
T Consensus 10 ~~~~~l~~sl~y~~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~-~~~~kT~v~~~~~~P~wne~f~f~-v~~ 84 (138)
T d1wfma_ 10 NQAPKLHYCLDYDCQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTG-SVEAQTALKKRQLHTTWEEGLVLP-LAE 84 (138)
T ss_dssp SSCCEEEEEEEEETTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTE-EEEEECCCCCCCSSEECSSCEEEE-CCT
T ss_pred CcCCEEEEEEEECCCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCC-ccceeeeEECCCCCceEeeeEEEE-eee
Confidence 567999999999999999999999999995 457789999999987543 357889999999999999999995 777
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccCCCCccceEeeccc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCK 595 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~ 595 (754)
.++....|+|.|||++.+++ ++||++.|+|.++........|..|..
T Consensus 85 ~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~ 132 (138)
T d1wfma_ 85 EELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKT 132 (138)
T ss_dssp TSSTTCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCC
T ss_pred hhccceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCC
Confidence 78888999999999999998 999999999999987777777877753
|
| >d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2b-domain of rabphilin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=4.3e-19 Score=165.22 Aligned_cols=111 Identities=32% Similarity=0.480 Sum_probs=100.3
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|+|++.|++..+.|.|+|++|+||+.++..+.+||||+|++.++.....+++|++++++.||+|||+|.|. ++..+
T Consensus 1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~-v~~~~ 79 (137)
T d2cm5a1 1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYD-IKHSD 79 (137)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEE-CCGGG
T ss_pred CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEE-eEHHH
Confidence 69999999999999999999999999999998899999999999887666678899999999999999999994 77788
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCcccC
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~ 582 (754)
+....|.|.|||++.++. +|||++.|++..+.
T Consensus 80 l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~ 112 (137)
T d2cm5a1 80 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG 112 (137)
T ss_dssp GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH
T ss_pred ccccEEEEEeeeCCCCCCCCEEEEEEeCccccC
Confidence 888999999999999887 99999999998653
|
| >d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin IV species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=3.9e-19 Score=166.23 Aligned_cols=110 Identities=28% Similarity=0.406 Sum_probs=95.3
Q ss_pred eeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccc
Q psy7848 471 LGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETD 550 (754)
Q Consensus 471 ~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~e 550 (754)
+|+|.|+|.|++..+.|.|+|++|+||+.++..+.+||||++++.++.....+.+|++++++.||.|||+|.| .++..+
T Consensus 1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F-~v~~~~ 79 (138)
T d1w15a_ 1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVF-DIPCES 79 (138)
T ss_dssp CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEE-ECCSSS
T ss_pred CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEE-EecHHH
Confidence 5999999999999999999999999999999999999999999987665556788999999999999999999 477888
Q ss_pred cCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 551 LSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 551 l~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
+....|.|.|||+|.+++ ++||++.|++...
T Consensus 80 ~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 111 (138)
T d1w15a_ 80 LEEISVEFLVLDSERGSRNEVIGRLVLGATAE 111 (138)
T ss_dssp STTEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred hCccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence 888899999999999987 9999999999764
|
| >d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptotagmin III species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.79 E-value=5.4e-20 Score=173.52 Aligned_cols=113 Identities=31% Similarity=0.507 Sum_probs=103.7
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
...|+|+|+|.|++..+.|.|+|++|+||+..+..+.+||||+|++.++.....+.+|++++++.||+|||.|.| .++.
T Consensus 4 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F-~v~~ 82 (145)
T d1dqva2 4 ADLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVF-DVAP 82 (145)
T ss_dssp SCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCC-CCCS
T ss_pred CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEE-EEeh
Confidence 469999999999999999999999999999999889999999999998766666789999999999999999999 4777
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCcccC
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRLR 582 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~ 582 (754)
.++....|.|.|||++.++. ++||++.|+|..+.
T Consensus 83 ~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~ 117 (145)
T d1dqva2 83 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD 117 (145)
T ss_dssp GGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTC
T ss_pred hhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcC
Confidence 88888899999999999988 99999999998764
|
| >d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: Synaptogamin I species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.78 E-value=6.6e-19 Score=168.42 Aligned_cols=112 Identities=31% Similarity=0.476 Sum_probs=102.9
Q ss_pred CceeEEEEEEEEECcCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeec
Q psy7848 469 TNLGSIELTVTYDSTTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSE 548 (754)
Q Consensus 469 ~~~G~I~~sl~Yd~~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~ 548 (754)
+.+|+|+|+|.|++..+.|.|+|++|+||+..+..+.+||||++++.++.......+|++++++.||+|||+|.|. ++.
T Consensus 9 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~-v~~ 87 (157)
T d1uowa_ 9 EKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFE-VPF 87 (157)
T ss_dssp GCCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEE-CCG
T ss_pred eeeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEE-ecH
Confidence 5799999999999999999999999999999999999999999999886655566789999999999999999994 788
Q ss_pred cccCcceEEEEEeeCCCCCC-ccceeeeecCccc
Q psy7848 549 TDLSLQSLHILVLDDDKYGH-DFLGEARFPLNRL 581 (754)
Q Consensus 549 ~el~~~~L~~sV~D~d~~g~-dfLGev~I~L~~L 581 (754)
.++....|.|.|||++.+++ ++||++.|++..+
T Consensus 88 ~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~ 121 (157)
T d1uowa_ 88 EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNST 121 (157)
T ss_dssp GGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCC
T ss_pred HHcCccEEEEEEcccCCCCCCceeEEEEEecccC
Confidence 88888899999999999988 9999999999764
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=2.7e-18 Score=157.86 Aligned_cols=120 Identities=33% Similarity=0.548 Sum_probs=96.7
Q ss_pred cCCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 483 TTCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 483 ~~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.-|.|.|+|++|+||+.++..|.+||||++.+.+ .+++|+++.+|.||.|||.|.|. +.. . ...|.|+|||
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~-----~~~~T~~~~~t~nP~wne~f~f~-v~~--~-~~~L~i~V~d 74 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN-----DRLQTHTVYKNLNPEWNKVFTFP-IKD--I-HDVLEVTVFD 74 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT-----EEEECCCCSSCSSCCCCEEEEEE-ESC--T-TCEEEEEEEE
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC-----eEEEEEeeCCceeEEEEEEEEEE-Eec--c-CceeEEEEEE
Confidence 3478999999999999999999999999999953 67899999999999999999995 432 2 3689999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
++.++. +|||++.|+|.++..+... |..|. .. ......+|+|+|++.|.
T Consensus 75 ~~~~~~d~~lG~~~i~l~~l~~~~~~--~~~l~------~~-----~~~~~~~G~i~l~~~~i 124 (126)
T d2ep6a1 75 EDGDKPPDFLGKVAIPLLSIRDGQPN--CYVLK------NK-----DLEQAFKGVIYLEMDLI 124 (126)
T ss_dssp EETTEEEEECCBCEEEGGGCCSSCCE--ECCCB------CS-----CTTSCCSSEEEEEEEEE
T ss_pred ccCCcCcceEEEEEEEHHHCCCCCce--EEEcc------cc-----CCCCceeEEEEEEEEEE
Confidence 999887 9999999999999765433 32222 11 11135679999998875
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.5e-18 Score=156.81 Aligned_cols=121 Identities=19% Similarity=0.293 Sum_probs=100.2
Q ss_pred CCEEEEEEEEecCCCCCC---CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEE
Q psy7848 484 TCSLHVTLHRAKGLRAMD---IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILV 560 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d---~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV 560 (754)
.+.|.|+|++|+||+... ..|.+||||++.+.+... .+++|+++.++.||.|||+|.|. + .+.....|.|.|
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~--~~~~T~~~~~t~nP~wne~f~f~-i--~~~~~~~L~v~V 76 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPD--SRKRTRHFNNDINPVWNETFEFI-L--DPNQENVLEITL 76 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTT--CCEECCCCTTCSSCEEEEEEEEE-E--CTTSCCEEEEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCccc--ceeEeeecCCCccceeceeeeec-c--cCcccCcEEEEE
Confidence 478999999999998753 458899999999976443 67899999999999999999984 3 334457899999
Q ss_pred eeCCCCCCccceeeeecCcccCCCCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 561 LDDDKYGHDFLGEARFPLNRLRPHISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 561 ~D~d~~g~dfLGev~I~L~~L~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
||++..++++||++.|+|.+|..+.....|++|.. ...|+|++.|.+.|
T Consensus 77 ~d~d~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~----------------~~~g~i~~~l~~~~ 125 (126)
T d1rlwa_ 77 MDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQ----------------VTEMVLEMSLEVAS 125 (126)
T ss_dssp EECCSSCCEEEEEEEEEGGGSCTTCEEEEEEEETT----------------TEEEEEEEEEECCC
T ss_pred EECCCCCCCeEEEEEEEHHHccCCCeEEEEEEccC----------------CCeEEEEEEEEEEe
Confidence 99998877999999999999988777777777742 34699999998865
|
| >d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=1.3e-18 Score=159.94 Aligned_cols=102 Identities=30% Similarity=0.420 Sum_probs=89.0
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEcc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKD 705 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d 705 (754)
.-|.|.|.|++|+||+.++.+|.+||||++++ +..+++|+++++|.||+|||+|.|.+.. . ...|.|+|||++
T Consensus 4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~----~~~~~~T~~~~~t~nP~wne~f~f~v~~--~-~~~L~i~V~d~~ 76 (126)
T d2ep6a1 4 DVGILQVKVLKAADLLAADFSGKSDPFCLLEL----GNDRLQTHTVYKNLNPEWNKVFTFPIKD--I-HDVLEVTVFDED 76 (126)
T ss_dssp CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEE----TTEEEECCCCSSCSSCCCCEEEEEEESC--T-TCEEEEEEEEEE
T ss_pred ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEc----CCeEEEEEeeCCceeEEEEEEEEEEEec--c-CceeEEEEEEcc
Confidence 34889999999999999999999999999999 4458999999999999999999999853 2 478999999999
Q ss_pred CCCCCceeEEEEEecCCCCchhhhHHhhh
Q psy7848 706 YGKSNDYLGCLELCCNSKGDRLRHWVDMM 734 (754)
Q Consensus 706 ~~~~ddfLG~v~L~l~s~ge~~~hW~~ll 734 (754)
.+++|++||.+.|++.....+..+|+.|.
T Consensus 77 ~~~~d~~lG~~~i~l~~l~~~~~~~~~l~ 105 (126)
T d2ep6a1 77 GDKPPDFLGKVAIPLLSIRDGQPNCYVLK 105 (126)
T ss_dssp TTEEEEECCBCEEEGGGCCSSCCEECCCB
T ss_pred CCcCcceEEEEEEEHHHCCCCCceEEEcc
Confidence 99999999999999987655556666553
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.67 E-value=4.1e-17 Score=151.76 Aligned_cols=120 Identities=28% Similarity=0.401 Sum_probs=94.5
Q ss_pred CCEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeec-CCCCCeeceeEEEeeeeccccCcceEEEEEee
Q psy7848 484 TCSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCL-RTINPEFHEKLTFYSVSETDLSLQSLHILVLD 562 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~-~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D 562 (754)
.|.|.|+|++|++|+..+..+.+||||++++.+ ...+|+++. ++.||+|||+|.|. +... ...|.|+|||
T Consensus 9 ~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~-----~~~~t~~~~~~~~nP~Wne~f~f~-v~~~---~~~L~v~V~d 79 (136)
T d1wfja_ 9 HGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT-----QDQKSNVAEGMGTTPEWNETFIFT-VSEG---TTELKAKIFD 79 (136)
T ss_dssp EEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS-----CEEECCCCTTCCSSCEEEEEEEEE-EESS---CCEEEEEECC
T ss_pred cEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee-----eeEEEEEEecCCCcEEEeeEEEEE-EcCc---cceEEEEEEE
Confidence 478999999999999999999999999999854 567888876 58999999999984 4432 3569999999
Q ss_pred CCCCCC-ccceeeeecCcccCCCCc-cceEeecccCCCCCccccccccccccccceeEEeeecccc
Q psy7848 563 DDKYGH-DFLGEARFPLNRLRPHIS-RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTK 626 (754)
Q Consensus 563 ~d~~g~-dfLGev~I~L~~L~~~~~-~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~ 626 (754)
+|.++. ++||++.|+|.++..... ...|..+. . .....|+|+|++.|.|.
T Consensus 80 ~d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~------~--------~~~~~G~i~l~l~~~p~ 131 (136)
T d1wfja_ 80 KDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV------K--------DEEYKGEIWVALSFKPS 131 (136)
T ss_dssp SSSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEE------E--------TTEEEEEEEEEEEEEEC
T ss_pred ecCCCCCCEEEEEEEEhHHhcccCCcCcEEEEec------C--------CCccCEEEEEEEEEEeC
Confidence 999987 899999999998743211 22233331 1 13567999999999875
|
| >d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from cytosolic phospholipase A2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.67 E-value=6.8e-17 Score=148.02 Aligned_cols=93 Identities=22% Similarity=0.377 Sum_probs=78.8
Q ss_pred ccceeeccccccccccC---CCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 627 KRALIVNLIKCTNLIPM---DSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~---d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
.++|.|.|++|+||+.. |..|.+||||++++.+. ...+++|++++++.||.|||+|.|.+. +.....|.|+|||
T Consensus 2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~-~~~~~~T~~~~~t~nP~wne~f~f~i~--~~~~~~L~v~V~d 78 (126)
T d1rlwa_ 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-PDSRKRTRHFNNDINPVWNETFEFILD--PNQENVLEITLMD 78 (126)
T ss_dssp CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS-TTCCEECCCCTTCSSCEEEEEEEEEEC--TTSCCEEEEEEEE
T ss_pred CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCc-ccceeEeeecCCCccceeceeeeeccc--CcccCcEEEEEEE
Confidence 36899999999999874 34688999999999643 234789999999999999999999985 4456789999999
Q ss_pred ccCCCCCceeEEEEEecCCC
Q psy7848 704 KDYGKSNDYLGCLELCCNSK 723 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ 723 (754)
++.++ |++||.+.|++...
T Consensus 79 ~d~~~-d~~lG~~~i~L~~l 97 (126)
T d1rlwa_ 79 ANYVM-DETLGTATFTVSSM 97 (126)
T ss_dssp CCSSC-CEEEEEEEEEGGGS
T ss_pred CCCCC-CCeEEEEEEEHHHc
Confidence 98765 89999999999863
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.66 E-value=6.4e-17 Score=149.80 Aligned_cols=112 Identities=21% Similarity=0.283 Sum_probs=87.0
Q ss_pred cceeeccccccccccC--CCCCCCCceEEEEecCCCC-cceeeeeeecC-CCCCccceeEEEEeecCccCCCeEEEEEEE
Q psy7848 628 RALIVNLIKCTNLIPM--DSNGFSDPFIKLYLKPDLH-KRKYKTGVKWK-TLNPIFNEEFAIETKITELSKQTLVITVWD 703 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~--d~~G~sDPYVKV~L~~~~~-k~k~KT~v~kk-TlNP~wNEtF~F~V~~~dL~~~~L~ItV~D 703 (754)
.+|.|.|++|+||+.+ +.+|.+||||+|+|.+... ..+++|+++++ ++||.|||+|.|.+...+ ...|.|+|||
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~--~~~L~~~V~D 81 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPD--LALVRFMVED 81 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGG--GCEEEEEEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcch--hceEEEEEEE
Confidence 3699999999999754 5678899999999976543 34889998665 479999999999986443 3679999999
Q ss_pred ccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCccee
Q psy7848 704 KDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHE 742 (754)
Q Consensus 704 ~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie 742 (754)
+|.+++|++||.+.|++.....+. +|+.|+...++.++
T Consensus 82 ~d~~~~d~~iG~~~i~l~~l~~g~-~~~~L~~~~g~~~~ 119 (131)
T d1qasa2 82 YDSSSKNDFIGQSTIPWNSLKQGY-RHVHLLSKNGDQHP 119 (131)
T ss_dssp CCTTTCCEEEEEEEEEGGGBCCEE-EEEEEECTTSCEEE
T ss_pred ecCCCCCcEEEEEEEEEeccCCCC-EEEECCCCCcCCCC
Confidence 999999999999999998865554 46777666565544
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.64 E-value=3.7e-16 Score=145.63 Aligned_cols=118 Identities=21% Similarity=0.296 Sum_probs=95.2
Q ss_pred CCEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccC
Q psy7848 484 TCSLHVTLHRAKGLRAMD-----------IHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLS 552 (754)
Q Consensus 484 ~~~L~VtIi~ArnL~~~d-----------~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~ 552 (754)
+|.|+|+|++|++|++.+ ..+..||||+|++. .....+|+++.++.||.|||.|.|. +..
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~----~~~~~~T~~~~~t~~P~Wne~f~f~-v~~---- 75 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD----DSRIGQTATKQKTNSPAWHDEFVTD-VCN---- 75 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET----TEEEEECCCCSSCSSCEEEEEEEEE-EEE----
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC----CCcCcEeeEEcCCCCccCccEEEEE-Eec----
Confidence 589999999999998753 45678999999994 2356789999999999999999995 442
Q ss_pred cceEEEEEeeCCCCCC-ccceeeeecCcccCCCCc--cceEeecccCCCCCccccccccccccccceeEEeeecccccc
Q psy7848 553 LQSLHILVLDDDKYGH-DFLGEARFPLNRLRPHIS--RDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFSTKKR 628 (754)
Q Consensus 553 ~~~L~~sV~D~d~~g~-dfLGev~I~L~~L~~~~~--~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p~~g 628 (754)
...|.|.|||++.+++ +|||++.|+|.++..+.. .+.|+.| ...|+|+|.+.+.+..|
T Consensus 76 ~~~l~i~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L------------------~p~G~v~l~v~~~~~~g 136 (136)
T d1gmia_ 76 GRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDL------------------EPEGKVYVIIDLSGSSG 136 (136)
T ss_dssp ECEEEEEEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEEC------------------BSSCEEEEEEEEEEEEC
T ss_pred CCceEEEEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeC------------------CCCcEEEEEEEEEeCCC
Confidence 3689999999999887 999999999999876543 2345544 24699999998877653
|
| >d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C epsilon species: Rat (Rattus rattus) [TaxId: 10117]
Probab=99.64 E-value=2.7e-16 Score=146.53 Aligned_cols=106 Identities=18% Similarity=0.294 Sum_probs=88.7
Q ss_pred ccceeeccccccccccCC-----------CCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCC
Q psy7848 627 KRALIVNLIKCTNLIPMD-----------SNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQ 695 (754)
Q Consensus 627 ~g~L~V~V~~A~nL~~~d-----------~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~ 695 (754)
.|.|.|.|++|++|++.+ ..+.+||||+|++. +....+|.+++++.||+|||+|.|++.. ..
T Consensus 5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~---~~~~~~T~~~~~t~~P~Wne~f~f~v~~----~~ 77 (136)
T d1gmia_ 5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVD---DSRIGQTATKQKTNSPAWHDEFVTDVCN----GR 77 (136)
T ss_dssp EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEET---TEEEEECCCCSSCSSCEEEEEEEEEEEE----EC
T ss_pred EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeC---CCcCcEeeEEcCCCCccCccEEEEEEec----CC
Confidence 488999999999998754 46779999999992 2236789999999999999999999863 36
Q ss_pred eEEEEEEEccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 696 TLVITVWDKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 696 ~L~ItV~D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
.|.|+|||++.+++|++||.+.|++. +++.++....+.|+.|.+
T Consensus 78 ~l~i~V~d~~~~~~d~~iG~~~i~l~----------~l~~~~~~~~~~w~~L~p 121 (136)
T d1gmia_ 78 KIELAVFHDAPIGYDDFVANCTIQFE----------ELLQNGSRHFEDWIDLEP 121 (136)
T ss_dssp EEEEEEEECCSSSSCEEEEEEEEEHH----------HHTSTTCSEEEEEEECBS
T ss_pred ceEEEEEEecCCCCceeEEEEEEEHH----------HhhhcCCcceeEEEeCCC
Confidence 89999999999999999999999986 456666666677887765
|
| >d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: Synaptotagmin-like (S variant) domain: C2 domain protein At1g63220 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.62 E-value=1e-16 Score=149.06 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=86.6
Q ss_pred cccceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeec-CCCCCccceeEEEEeecCccCCCeEEEEEEEc
Q psy7848 626 KKRALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKW-KTLNPIFNEEFAIETKITELSKQTLVITVWDK 704 (754)
Q Consensus 626 ~~g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~k-kTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~ 704 (754)
..|.|.|.|++|++|+.++.+|.+||||++++. ..+++|.+++ +++||+|||+|.|.+.. ....|.|+|||+
T Consensus 8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~----~~~~~t~~~~~~~~nP~Wne~f~f~v~~---~~~~L~v~V~d~ 80 (136)
T d1wfja_ 8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCR----TQDQKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDK 80 (136)
T ss_dssp CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESS----SCEEECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCS
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEe----eeeEEEEEEecCCCcEEEeeEEEEEEcC---ccceEEEEEEEe
Confidence 348899999999999999999999999999993 3477888876 68999999999999863 235699999999
Q ss_pred cCCCCCceeEEEEEecCC---CCchhhhHHhhhcC
Q psy7848 705 DYGKSNDYLGCLELCCNS---KGDRLRHWVDMMKY 736 (754)
Q Consensus 705 d~~~~ddfLG~v~L~l~s---~ge~~~hW~~ll~~ 736 (754)
+.++.|++||.+.|+|.. .+....+|+.+...
T Consensus 81 d~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~ 115 (136)
T d1wfja_ 81 DVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD 115 (136)
T ss_dssp SSCTTTCCSEEEEEESHHHHHHSEEEEEEEEEEET
T ss_pred cCCCCCCEEEEEEEEhHHhcccCCcCcEEEEecCC
Confidence 999999999999999875 23344567776653
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=7.1e-16 Score=143.20 Aligned_cols=121 Identities=18% Similarity=0.225 Sum_probs=91.2
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|.|+|++|++|+..+..+.+||||+|.+.+ ..++|+++.+|.||.|||.|.|. +.. ...|.|.|||+|
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~-----~~~kT~v~~~t~nP~wne~f~f~-~~~----~~~l~~~V~d~d 75 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTVDG-----QSKKTEKCNNTNSPKWKQPLTVI-VTP----VSKLHFRVWSHQ 75 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEETT-----EEEECCCCSSCSSCEEEEEEEEE-ECT----TCEEEEEEEECC
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEECC-----eEEeeEEEEecccEEEcceEEEE-EEe----cceeEEEEEEcc
Confidence 67999999999999988888899999999954 67899999999999999999985 443 368999999999
Q ss_pred CCCC-ccceeeeecCcccCCC---CccceEeecccCCCCCccccccccccccccceeEEeeecc
Q psy7848 565 KYGH-DFLGEARFPLNRLRPH---ISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFS 624 (754)
Q Consensus 565 ~~g~-dfLGev~I~L~~L~~~---~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~ 624 (754)
.++. ++||++.|+|.++... .....++.+. +.. ........|+|.|.|.+.
T Consensus 76 ~~~~d~~iG~~~i~L~~l~~~~~~~~~~~~~~l~----l~~-----~~~~~~~~G~L~v~l~~~ 130 (133)
T d2nq3a1 76 TLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQ----LGG-----DKEPTETIGDLSICLDGL 130 (133)
T ss_dssp SSSCCEEEEEEEEEHHHHHHHTTTEESSEEEEEE----EEE-----SSCTTSEEEEEEEEEESE
T ss_pred CCCCCceEEEEEEEHHHhhhhcCCceeeEEEEEe----cCC-----CCCCceEEEEEEEEEeeE
Confidence 9988 9999999999987422 1122232221 000 011245679999988764
|
| >d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=2.9e-15 Score=138.44 Aligned_cols=97 Identities=22% Similarity=0.363 Sum_probs=77.7
Q ss_pred CEEEEEEEEecCCCCC--CCCCCCCcEEEEEEeCCCCCceEEEeeeecC-CCCCeeceeEEEeeeeccccCcceEEEEEe
Q psy7848 485 CSLHVTLHRAKGLRAM--DIHGTSDPFCKLNLVPLTKTSHRLRTKTCLR-TINPEFHEKLTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~--d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~-TlNP~WnE~f~F~~I~~~el~~~~L~~sV~ 561 (754)
..|.|+|++|++|+.. +.++.+||||+|++.+......+++|+++++ ++||.|||+|.|. +...+ ...|+|+||
T Consensus 4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~-~~~~~--~~~L~~~V~ 80 (131)
T d1qasa2 4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE-VTVPD--LALVRFMVE 80 (131)
T ss_dssp EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEE-ESCGG--GCEEEEEEE
T ss_pred EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEE-EEcch--hceEEEEEE
Confidence 4799999999999754 4667899999999987555567889998765 5799999999995 33332 367999999
Q ss_pred eCCCCCC-ccceeeeecCcccCCC
Q psy7848 562 DDDKYGH-DFLGEARFPLNRLRPH 584 (754)
Q Consensus 562 D~d~~g~-dfLGev~I~L~~L~~~ 584 (754)
|+|.+++ ++||++.|+|..+..+
T Consensus 81 D~d~~~~d~~iG~~~i~l~~l~~g 104 (131)
T d1qasa2 81 DYDSSSKNDFIGQSTIPWNSLKQG 104 (131)
T ss_dssp ECCTTTCCEEEEEEEEEGGGBCCE
T ss_pred EecCCCCCcEEEEEEEEEeccCCC
Confidence 9999987 8999999999998654
|
| >d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: E3 ubiquitin-protein ligase Itchy species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=9.7e-16 Score=142.27 Aligned_cols=87 Identities=17% Similarity=0.170 Sum_probs=77.5
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
++|.|+|++|++|+..+.++.+||||+|.+ +..+++|+++++|.||.|||.|.|.+.. ...|.|+|||++.+
T Consensus 6 ~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~----~~~~~kT~v~~~t~nP~wne~f~f~~~~----~~~l~~~V~d~d~~ 77 (133)
T d2nq3a1 6 SQLQITVISAKLKENKKNWFGPSPYVEVTV----DGQSKKTEKCNNTNSPKWKQPLTVIVTP----VSKLHFRVWSHQTL 77 (133)
T ss_dssp EEEEEEEEEEEECCCC--CCCCCEEEEEEE----TTEEEECCCCSSCSSCEEEEEEEEEECT----TCEEEEEEEECCSS
T ss_pred eEEEEEEEEeECCCcCCCCCCcCeEEEEEE----CCeEEeeEEEEecccEEEcceEEEEEEe----cceeEEEEEEccCC
Confidence 679999999999999888889999999999 4558899999999999999999999863 36899999999999
Q ss_pred CCCceeEEEEEecCC
Q psy7848 708 KSNDYLGCLELCCNS 722 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s 722 (754)
++|++||.+.|+|..
T Consensus 78 ~~d~~iG~~~i~L~~ 92 (133)
T d2nq3a1 78 KSDVLLGTAALDIYE 92 (133)
T ss_dssp SCCEEEEEEEEEHHH
T ss_pred CCCceEEEEEEEHHH
Confidence 999999999999863
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.55 E-value=6.4e-15 Score=135.95 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=71.3
Q ss_pred cceeeccccccccccCCCCCCCCceEEEEecCCCCcceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCC
Q psy7848 628 RALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHKRKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYG 707 (754)
Q Consensus 628 g~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~ 707 (754)
+.|.|.|.+|++|.+.+ ..||||++.+ ++.+.+|.+++ +.||+|||+|.|.+.. . ...|.|+|||++.+
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~----~~~k~~T~~~k-~~nP~Wne~f~f~v~~--~-~~~L~v~V~d~~~~ 70 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKV----QNVKSTTIAVR-GSQPSWEQDFMFEINR--L-DLGLTVEVWNKGLI 70 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEE----TTEEEECCCEE-SSSCEEEEEEEEEECC--C-SSEEEEEEEECCSS
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEe----CCEEEEEEEec-CCCCeEEEEEEEeecc--c-cceEEEEEEeCCCc
Confidence 46899999999998876 5799999999 45688898886 5699999999999953 2 47899999999887
Q ss_pred CCCceeEEEEEecCC
Q psy7848 708 KSNDYLGCLELCCNS 722 (754)
Q Consensus 708 ~~ddfLG~v~L~l~s 722 (754)
+ |++||.+.|++..
T Consensus 71 ~-d~~lG~~~I~L~~ 84 (128)
T d2cjta1 71 W-DTMVGTVWIPLRT 84 (128)
T ss_dssp C-EEEEEEEEEEGGG
T ss_pred C-CcceEEEEEEehh
Confidence 4 8999999999985
|
| >d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Unc-13 homolog A species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.53 E-value=2.4e-14 Score=131.99 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=86.4
Q ss_pred CEEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCC
Q psy7848 485 CSLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDD 564 (754)
Q Consensus 485 ~~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d 564 (754)
+.|+|+|++|++|.+.+ ..||||++.+. ..+.+|.+++ +.||+|||.|.|. +. +. ...|.|.|||++
T Consensus 2 ~~L~V~v~~a~~l~~~~---~~dpYv~l~~~-----~~k~~T~~~k-~~nP~Wne~f~f~-v~--~~-~~~L~v~V~d~~ 68 (128)
T d2cjta1 2 SLLCVGVKKAKFDGAQE---KFNTYVTLKVQ-----NVKSTTIAVR-GSQPSWEQDFMFE-IN--RL-DLGLTVEVWNKG 68 (128)
T ss_dssp EEEEEEEEEEECSSCGG---GCEEEEEEEET-----TEEEECCCEE-SSSCEEEEEEEEE-EC--CC-SSEEEEEEEECC
T ss_pred eEEEEEEEEEECCCCCC---CcCeEEEEEeC-----CEEEEEEEec-CCCCeEEEEEEEe-ec--cc-cceEEEEEEeCC
Confidence 46999999999999866 57999999994 3788898886 4599999999995 33 22 368999999999
Q ss_pred CCCCccceeeeecCcccCCCC--ccceEeecccCCCCCccccccccccccccceeEEeeec
Q psy7848 565 KYGHDFLGEARFPLNRLRPHI--SRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCF 623 (754)
Q Consensus 565 ~~g~dfLGev~I~L~~L~~~~--~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y 623 (754)
..++++||++.|+|.++.... ....|+.|.... .....+..+. .....+.|++.++|
T Consensus 69 ~~~d~~lG~~~I~L~~l~~~~~~~~~~W~~L~~~~-~~~~gei~gt-~~~~~~~~ll~~~~ 127 (128)
T d2cjta1 69 LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQA-IMADSEICGT-KDPTFHRILLDAHF 127 (128)
T ss_dssp SSCEEEEEEEEEEGGGSCBCSSCCCCEEEECBC-----------CC-SCCCCCEEEEEEEE
T ss_pred CcCCcceEEEEEEehhhccCCCCCCCeeEECCccc-cCCCCEEEee-ecCCCcEEEEEEEc
Confidence 887799999999999986432 233455553211 1111111121 13345677777776
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.40 E-value=3.5e-13 Score=123.18 Aligned_cols=113 Identities=15% Similarity=0.239 Sum_probs=81.1
Q ss_pred EEEEEEEecCCCCCCCCCCCCcEEEEEEeCCCCCceEEEeeeecCCCCCeeceeEEEeeeeccccCcceEEEEEeeCCCC
Q psy7848 487 LHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLTKTSHRLRTKTCLRTINPEFHEKLTFYSVSETDLSLQSLHILVLDDDKY 566 (754)
Q Consensus 487 L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~~~~~~~rTkvi~~TlNP~WnE~f~F~~I~~~el~~~~L~~sV~D~d~~ 566 (754)
|.|.|....--+.....+.+||||+|++.+........+|+++++|+||+|||+|.|. |.. ...|.|.|||+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~-v~~----~~~l~i~V~d~d-- 77 (123)
T d1bdya_ 5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAH-IYE----GRVIQIVLMRAA-- 77 (123)
T ss_dssp EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEE-CCT----TCEEEEEEEEET--
T ss_pred EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEE-Ecc----ccEEEEEEEEcc--
Confidence 4455544422223345788999999999764333345679999999999999999984 432 368999999986
Q ss_pred CCccceeeeecCcccCC-----CCccceEeecccCCCCCccccccccccccccceeEEeeeccc
Q psy7848 567 GHDFLGEARFPLNRLRP-----HISRDLCLNLCKHYPVPREEEVWGEEECWQHGKIFLTLCFST 625 (754)
Q Consensus 567 g~dfLGev~I~L~~L~~-----~~~~~~~~~L~~~~~l~~~~~~~~~~~~~~~GeL~VsL~y~p 625 (754)
++++|.+.|++.+|.. +...+.|+.| ...|+|++.+.|..
T Consensus 78 -d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L------------------~~~Gkl~l~v~~f~ 122 (123)
T d1bdya_ 78 -EDPMSEVTVGVSVLAERCKKNNGKAEFWLDL------------------QPQAKVLMCVQYFL 122 (123)
T ss_dssp -TEEEEEEEEEHHHHHHHHHTTTTEEEEEEEC------------------BSSCEEEEEEEEEE
T ss_pred -ccccCccEEehhheeeccccCCCcccEEEeC------------------CCCEEEEEEEEEec
Confidence 4799999999888743 3344455555 35799999999864
|
| >d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Domain from protein kinase C delta species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.39 E-value=3.8e-13 Score=123.00 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=75.6
Q ss_pred eeeccccccccccCCCCCCCCceEEEEecCCCCc-ceeeeeeecCCCCCccceeEEEEeecCccCCCeEEEEEEEccCCC
Q psy7848 630 LIVNLIKCTNLIPMDSNGFSDPFIKLYLKPDLHK-RKYKTGVKWKTLNPIFNEEFAIETKITELSKQTLVITVWDKDYGK 708 (754)
Q Consensus 630 L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~~~k-~k~KT~v~kkTlNP~wNEtF~F~V~~~dL~~~~L~ItV~D~d~~~ 708 (754)
+.|.++.+..++ ..+|.+||||+|++.+.... .+++|.++++|+||+|||+|.|.|.. ...|.|.|||+|
T Consensus 7 ~~~~~~~~~~~~--~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~----~~~l~i~V~d~d--- 77 (123)
T d1bdya_ 7 ISFNSYELGSLQ--AEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE----GRVIQIVLMRAA--- 77 (123)
T ss_dssp EEEEEEECCTTC--CCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT----TCEEEEEEEEET---
T ss_pred EEEEEeecccCC--CCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc----ccEEEEEEEEcc---
Confidence 445555555544 34788999999999754332 36789999999999999999999852 468999999986
Q ss_pred CCceeEEEEEecCCCCchhhhHHhhhcCCCcceeeEEeecC
Q psy7848 709 SNDYLGCLELCCNSKGDRLRHWVDMMKYPDHKHEGIHNLSI 749 (754)
Q Consensus 709 ~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ie~Wh~L~~ 749 (754)
++++|.+.|++.... ......+...+.|+.|++
T Consensus 78 -d~~~g~~~i~l~~l~-------~~~~~~~~~~~~W~~L~~ 110 (123)
T d1bdya_ 78 -EDPMSEVTVGVSVLA-------ERCKKNNGKAEFWLDLQP 110 (123)
T ss_dssp -TEEEEEEEEEHHHHH-------HHHHTTTTEEEEEEECBS
T ss_pred -ccccCccEEehhhee-------eccccCCCcccEEEeCCC
Confidence 789999999976421 111234566778888764
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=2e-12 Score=117.91 Aligned_cols=101 Identities=21% Similarity=0.286 Sum_probs=70.8
Q ss_pred ceeeccccccccccCCCCCCCCceEEEEecCC--CCcceeeee--eecCCCCCcccee-EEEE-eecCccCCCeEEEEEE
Q psy7848 629 ALIVNLIKCTNLIPMDSNGFSDPFIKLYLKPD--LHKRKYKTG--VKWKTLNPIFNEE-FAIE-TKITELSKQTLVITVW 702 (754)
Q Consensus 629 ~L~V~V~~A~nL~~~d~~G~sDPYVKV~L~~~--~~k~k~KT~--v~kkTlNP~wNEt-F~F~-V~~~dL~~~~L~ItV~ 702 (754)
.|.|.|+.|++|+.. ..||||+|+|.+. +...+++|+ +..+++||+|||+ |.|. +. ...-..|.|.||
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~--~~~l~~L~f~V~ 75 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKIL--MPELASLRVAVM 75 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEES--SGGGCEEEEEEE
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecC--CCcccEEEEEEE
Confidence 578999999999765 3799999999742 222334443 4578899999986 4443 43 333368999999
Q ss_pred EccCCCCCceeEEEEEecCCCCchhhhHHhhhcCCCcc
Q psy7848 703 DKDYGKSNDYLGCLELCCNSKGDRLRHWVDMMKYPDHK 740 (754)
Q Consensus 703 D~d~~~~ddfLG~v~L~l~s~ge~~~hW~~ll~~P~~~ 740 (754)
|++ |+|||.+.|+++..-.++.| ..|...-+++
T Consensus 76 D~d----~~~lG~~~ipl~~l~~GyR~-vpL~~~~g~~ 108 (122)
T d2zkmx2 76 EEG----NKFLGHRIIPINALNSGYHH-LCLHSESNMP 108 (122)
T ss_dssp ETT----TEEEEEEEEEGGGBCCEEEE-EEEECTTCCE
T ss_pred CCC----CCEEEEEEEEcccCcCCceE-EEccCCCcCC
Confidence 975 79999999999976555433 3444433433
|
| >d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: C2 domain-like superfamily: C2 domain (Calcium/lipid-binding domain, CaLB) family: PLC-like (P variant) domain: Phospholipase C-beta-2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=1.5e-11 Score=112.06 Aligned_cols=90 Identities=27% Similarity=0.483 Sum_probs=66.5
Q ss_pred EEEEEEEEecCCCCCCCCCCCCcEEEEEEeCCC-CCceEEEeee--ecCCCCCeecee-EEEeeeeccccCcceEEEEEe
Q psy7848 486 SLHVTLHRAKGLRAMDIHGTSDPFCKLNLVPLT-KTSHRLRTKT--CLRTINPEFHEK-LTFYSVSETDLSLQSLHILVL 561 (754)
Q Consensus 486 ~L~VtIi~ArnL~~~d~~g~sDPYVkv~Llp~~-~~~~~~rTkv--i~~TlNP~WnE~-f~F~~I~~~el~~~~L~~sV~ 561 (754)
.|.|+|+.|++|+.. ..||||+|+|.+.. ....+.+|++ ..+++||+|||+ |.|..+...++ ..|+|.||
T Consensus 2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l--~~L~f~V~ 75 (122)
T d2zkmx2 2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAVM 75 (122)
T ss_dssp EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEEE
T ss_pred EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcc--cEEEEEEE
Confidence 589999999999865 37999999996411 1123344444 477899999976 44433333333 68999999
Q ss_pred eCCCCCCccceeeeecCcccCCC
Q psy7848 562 DDDKYGHDFLGEARFPLNRLRPH 584 (754)
Q Consensus 562 D~d~~g~dfLGev~I~L~~L~~~ 584 (754)
|+| ++|||++.|||..|..+
T Consensus 76 D~d---~~~lG~~~ipl~~l~~G 95 (122)
T d2zkmx2 76 EEG---NKFLGHRIIPINALNSG 95 (122)
T ss_dssp ETT---TEEEEEEEEEGGGBCCE
T ss_pred CCC---CCEEEEEEEEcccCcCC
Confidence 986 58999999999999754
|
| >d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: Rififylin (FYVE-RING finger protein Sakura) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.95 E-value=0.00012 Score=55.22 Aligned_cols=48 Identities=29% Similarity=0.740 Sum_probs=38.6
Q ss_pred ccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccchhhhh
Q psy7848 137 ACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKICAETRE 197 (754)
Q Consensus 137 ~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC~~~re 197 (754)
.|..|+.+|+ +....+.|..|++.+|.+|..... ...++|..|.+.|.
T Consensus 2 ~C~~C~~~F~--------~~~rkhhCr~CG~~fC~~Cs~~~~-----~~~RvC~~C~~~r~ 49 (51)
T d1y02a2 2 SCKSCGAHFA--------NTARKQTCLDCKKNFCMTCSSQVG-----NGPRLCLLCQRFRA 49 (51)
T ss_dssp CCTTTCCCCS--------SGGGCEECTTTCCEECGGGEEC---------CCEEHHHHHHHH
T ss_pred CccccCCccc--------CCccCcccccCCcccCccccCCCC-----CCCeECHhHhhHhh
Confidence 5999999999 455699999999999999987653 55699999998763
|
| >d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: vps27p protein species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.39 E-value=0.0027 Score=50.27 Aligned_cols=57 Identities=30% Similarity=0.610 Sum_probs=43.2
Q ss_pred cccccccccCCCccccccccCCCCccccccccccccccccccc---cCCCCCCceeeccchhhhhhhh
Q psy7848 136 HACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESV---SASKKENIWLCKICAETREMWK 200 (754)
Q Consensus 136 ~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~---~~~~~~~~WlC~vC~~~rel~~ 200 (754)
..|..|+.+|+ +..+.+-|..|++.+|..|..... ......+.=+|..|.+..+...
T Consensus 6 ~~C~~C~~~F~--------~~~rkhhCr~CG~~fC~~Cs~~~~~l~~~~~~~p~RVC~~C~~~~~~~~ 65 (67)
T d1vfya_ 6 DACMICSKKFS--------LLNRKHHCRSCGGVFCQEHSSNSIPLPDLGIYEPVRVCDSCFEDYEFIV 65 (67)
T ss_dssp SBCTTTCCBCB--------TTBCCEECTTTCCEECGGGSCEEEEEGGGTEEEEEEECHHHHHHHHHHH
T ss_pred cccccCCCccc--------CcccccccccCCCEecccccCCcEECcccCCCCCcEeCHHHHHHHHHHh
Confidence 57999999999 556799999999999999975432 1111234568999999887654
|
| >d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: Hrs species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=94.55 E-value=0.0061 Score=48.89 Aligned_cols=54 Identities=19% Similarity=0.546 Sum_probs=41.3
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccc---ccCCCCCCceeeccchhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIES---VSASKKENIWLCKICAETR 196 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~---~~~~~~~~~WlC~vC~~~r 196 (754)
...|..|+..|+ +.++.+.|..|.+.+|.+|.... +......+.=+|+.|++.-
T Consensus 13 ~~~C~~C~~~F~--------~~~rrhhCr~CG~~~C~~C~~~~~~lp~~~~~~p~RVC~~C~~~l 69 (72)
T d1dvpa2 13 GRVCHRCRVEFT--------FTNRKHHCRNCGQVFCGQCTAKQCPLPKYGIEKEVRVCDGCFAAL 69 (72)
T ss_dssp CSBCTTTCCBCC--------SSSCCEECTTTCCEECSTTSCEEEEEGGGTEEEEEEECHHHHHHH
T ss_pred CCccccCCCccc--------CccccccccccCCeeChhhhCCceECcccCCCCCCEeCHHHHHHH
Confidence 468999999999 56779999999999999998543 2112234467899998653
|
| >d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: Eea1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.55 E-value=0.0093 Score=46.60 Aligned_cols=54 Identities=24% Similarity=0.647 Sum_probs=41.9
Q ss_pred ccccccccccCCCccccccccCCCCcccccccccccccccccccc-CCCCCCceeeccchhhh
Q psy7848 135 AHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS-ASKKENIWLCKICAETR 196 (754)
Q Consensus 135 ~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~-~~~~~~~WlC~vC~~~r 196 (754)
...|..|+.+|+ +..+.+-|..|.+-||..|...... .....+.=+|+.|....
T Consensus 8 ~~~C~~C~~~F~--------~~~rrHHCR~CG~v~C~~Cs~~~~~~~~~~~~~RVC~~C~~~l 62 (64)
T d1joca1 8 VQNCMACGKGFS--------VTVRRHHCRQCGNIFCAECSAKNALTPSSKKPVRVCDACFNDL 62 (64)
T ss_dssp CCBCTTTCCBCC--------SSSCCEECTTTCCEECGGGSCEEECCTTCSSCEEECHHHHHHT
T ss_pred CCcCcCcCCccc--------CCccccchhhhCCeecccccCCceecCCCCCccEehHHHHHHh
Confidence 478999999999 5567899999999999999876531 12234567899997654
|
| >d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Small proteins fold: FYVE/PHD zinc finger superfamily: FYVE/PHD zinc finger family: FYVE, a phosphatidylinositol-3-phosphate binding domain domain: Zinc finger FYVE domain containing protein 19 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.53 E-value=0.016 Score=48.15 Aligned_cols=54 Identities=24% Similarity=0.461 Sum_probs=41.1
Q ss_pred cccccccccccCCCccccccccCCCCcccccccccccccccccccc--CCCCCCceeeccchhh
Q psy7848 134 AAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVS--ASKKENIWLCKICAET 195 (754)
Q Consensus 134 ~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~--~~~~~~~WlC~vC~~~ 195 (754)
.+..|..|++.|+ +.++.+.|..|...+|..|...... .....+.=+|+.|...
T Consensus 8 ~~s~C~~C~~~Fs--------~~~rrhhCr~CG~vfC~~Cs~~~~~lp~~~~~~~RVC~~C~~~ 63 (88)
T d1wfka_ 8 MESRCYGCAVKFT--------LFKKEYGCKNCGRAFCNGCLSFSALVPRAGNTQQKVCKQCHTI 63 (88)
T ss_dssp CCSBCTTTCCBCC--------SSSCEEECSSSCCEEETTTSCEEEEETTTTSEEEEECHHHHHH
T ss_pred ccCcCcccCchhc--------cccccccccccChhhChHHhCCccccCCCCCCCCeECHHHHHH
Confidence 4689999999999 5667999999999999999875421 0112335689999754
|
| >d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Small proteins fold: RING/U-box superfamily: RING/U-box family: RING finger domain, C3HC4 domain: brca1 RING domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.84 E-value=0.28 Score=41.14 Aligned_cols=61 Identities=20% Similarity=0.491 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhhhhccCCCccccccccccccCCCccccccccCCCCccccccccccccccccccccCCCCCCceeeccc
Q psy7848 113 RVGRLVERVDNMKRNVTGGAAAAHACALCGDKFSPIFDRLGLFGAKCLVCHDCRGGVCQKCGIESVSASKKENIWLCKIC 192 (754)
Q Consensus 113 Ri~~L~~~l~~~k~~~~~~~~~~~~C~~C~~~~g~~~~~~~~~~~~~~~C~~C~~~vC~~C~~~~~~~~~~~~~WlC~vC 192 (754)
||..+.+-|..|++. -.|.+|...|- .-+-..|+|..|..|-...- ........|.+|
T Consensus 7 ~~~~~~~~~~~l~~~--------l~CpIC~~~~~------------~pv~~~CgH~fC~~Ci~~~~--~~~~~~~~CP~C 64 (103)
T d1jm7a_ 7 RVEEVQNVINAMQKI--------LECPICLELIK------------EPVSTKCDHIFCKFCMLKLL--NQKKGPSQCPLC 64 (103)
T ss_dssp SHHHHHHHHHHHHHH--------TSCSSSCCCCS------------SCCBCTTSCCCCSHHHHHHH--HSSSSSCCCTTT
T ss_pred hHHHHHHHHHhcccC--------cCCCccCchhC------------CeEEcCCCCchhhHHHHHHH--HHCCCCCcCcCC
Confidence 344455555566554 46999998776 22234699999999965432 112345789999
Q ss_pred hhh
Q psy7848 193 AET 195 (754)
Q Consensus 193 ~~~ 195 (754)
...
T Consensus 65 r~~ 67 (103)
T d1jm7a_ 65 KND 67 (103)
T ss_dssp SCC
T ss_pred CCc
Confidence 853
|