Psyllid ID: psy7867
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | 2.2.26 [Sep-21-2011] | |||||||
| P12252 | 1070 | cAMP-specific 3',5'-cycli | yes | N/A | 0.770 | 0.348 | 0.644 | 1e-167 | |
| Q9W4S9 | 983 | cAMP-specific 3',5'-cycli | no | N/A | 0.770 | 0.379 | 0.644 | 1e-166 | |
| Q9W4T4 | 1209 | cAMP-specific 3',5'-cycli | no | N/A | 0.770 | 0.308 | 0.644 | 1e-166 | |
| Q9W4T0 | 903 | cAMP-specific 3',5'-cycli | no | N/A | 0.770 | 0.413 | 0.644 | 1e-165 | |
| Q8IRU4 | 662 | cAMP-specific 3',5'-cycli | no | N/A | 0.770 | 0.563 | 0.644 | 1e-164 | |
| Q08499 | 809 | cAMP-specific 3',5'-cycli | no | N/A | 0.729 | 0.436 | 0.535 | 1e-131 | |
| Q01063 | 747 | cAMP-specific 3',5'-cycli | yes | N/A | 0.729 | 0.472 | 0.535 | 1e-131 | |
| P14270 | 803 | cAMP-specific 3',5'-cycli | no | N/A | 0.729 | 0.439 | 0.533 | 1e-130 | |
| Q08493 | 712 | cAMP-specific 3',5'-cycli | no | N/A | 0.723 | 0.491 | 0.520 | 1e-125 | |
| P14644 | 536 | cAMP-specific 3',5'-cycli | no | N/A | 0.721 | 0.651 | 0.513 | 1e-124 |
| >sp|P12252|PDE4B_DROME cAMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila melanogaster GN=dnc PE=1 SV=4 | Back alignment and function desciption |
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Score = 587 bits (1514), Expect = e-167, Method: Compositional matrix adjust.
Identities = 303/470 (64%), Positives = 333/470 (70%), Gaps = 97/470 (20%)
Query: 1 MLNKELSHFSES----------------NKQQELDLPALRIEDSQ---GSDPRSGGASSK 41
MLNKELSHFSES +KQQE DLP+LR+ED+ ++ +G S+
Sbjct: 558 MLNKELSHFSESSRSGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAAGQQSAG 617
Query: 42 KKDRGGPPGRTVPMSHISGVKRPLTHTNSFTGEKLPKHGVETASEEELGN---------- 91
+ R P R PMS ISGVKRPL+HTNSFTGE+LP GVET E ELG
Sbjct: 618 QYARSRSP-RGPPMSQISGVKRPLSHTNSFTGERLPTFGVETPRENELGTLLGELDTWGI 676
Query: 92 -----------------------NRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTH 128
+R+LL + +IP KTF+NFM TLEDHYVKDNPFHNS H
Sbjct: 677 QIFSIGEFSVNRPLTCVAYTIFQSRELLTSLMIPPKTFLNFMSTLEDHYVKDNPFHNSLH 736
Query: 129 AADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYN 188
AADVTQSTNVLLN+PALE VFTPLE+ ALFAA IHDVDHPGLTNQFL+NSSSELALMYN
Sbjct: 737 AADVTQSTNVLLNTPALEGVFTPLEVGGALFAACIHDVDHPGLTNQFLVNSSSELALMYN 796
Query: 189 DESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKL 248
DESVLENHHLA VAFKL
Sbjct: 797 DESVLENHHLA--------------------------------------------VAFKL 812
Query: 249 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL 308
LQN+GCDI CN+ KKQ+QTLRKMVID+VLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL
Sbjct: 813 LQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL 872
Query: 309 DNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDR 368
DNYTDRIQVLENLVHCADLSNPTKPLPLY++WV LLMEEFF QGDKERE +DISPMCDR
Sbjct: 873 DNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDR 932
Query: 369 LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYI 418
+ATIEKSQVGFIDYIVHPLWETWADLVHPDAQ+ILD LEENRD+YQ+ I
Sbjct: 933 HNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSMI 982
|
Hydrolyzes the second messenger cAMP, which is a key regulator of many important physiological processes (By similarity). Vital for female fertility. Required for learning/memory. Drosophila melanogaster (taxid: 7227) EC: 3EC: .EC: 1EC: .EC: 4EC: .EC: 1EC: 7 |
| >sp|Q9W4S9|PDE4C_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoforms N/G OS=Drosophila melanogaster GN=dnc PE=3 SV=2 | Back alignment and function description |
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| >sp|Q9W4T4|PDE4A_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform I OS=Drosophila melanogaster GN=dnc PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9W4T0|PDE4D_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform M OS=Drosophila melanogaster GN=dnc PE=3 SV=2 | Back alignment and function description |
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| >sp|Q8IRU4|PDE4E_DROME cAMP-specific 3',5'-cyclic phosphodiesterase, isoform F OS=Drosophila melanogaster GN=dnc PE=3 SV=1 | Back alignment and function description |
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| >sp|Q08499|PDE4D_HUMAN cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Homo sapiens GN=PDE4D PE=1 SV=2 | Back alignment and function description |
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| >sp|Q01063|PDE4D_MOUSE cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Mus musculus GN=Pde4d PE=1 SV=2 | Back alignment and function description |
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| >sp|P14270|PDE4D_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Rattus norvegicus GN=Pde4d PE=1 SV=4 | Back alignment and function description |
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| >sp|Q08493|PDE4C_HUMAN cAMP-specific 3',5'-cyclic phosphodiesterase 4C OS=Homo sapiens GN=PDE4C PE=1 SV=2 | Back alignment and function description |
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| >sp|P14644|PDE4C_RAT cAMP-specific 3',5'-cyclic phosphodiesterase 4C (Fragment) OS=Rattus norvegicus GN=Pde4c PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | ||||||
| 383854444 | 989 | PREDICTED: cAMP-specific 3',5'-cyclic ph | 0.764 | 0.374 | 0.682 | 1e-172 | |
| 328789199 | 1017 | PREDICTED: cAMP-specific 3',5'-cyclic ph | 0.764 | 0.363 | 0.680 | 1e-172 | |
| 332025370 | 538 | cAMP-specific 3',5'-cyclic phosphodieste | 0.809 | 0.728 | 0.622 | 1e-170 | |
| 307169672 | 666 | cAMP-specific 3',5'-cyclic phosphodieste | 0.764 | 0.555 | 0.678 | 1e-170 | |
| 307203122 | 504 | cAMP-specific 3',5'-cyclic phosphodieste | 0.764 | 0.734 | 0.678 | 1e-169 | |
| 328703954 | 787 | PREDICTED: cAMP-specific 3',5'-cyclic ph | 0.762 | 0.468 | 0.661 | 1e-167 | |
| 242004829 | 761 | cAMP-specific 3',5'-cyclic phosphodieste | 0.789 | 0.501 | 0.627 | 1e-167 | |
| 45551404 | 1068 | dunce, isoform D [Drosophila melanogaste | 0.770 | 0.349 | 0.644 | 1e-165 | |
| 24639470 | 1070 | dunce, isoform I [Drosophila melanogaste | 0.770 | 0.348 | 0.644 | 1e-165 | |
| 24639472 | 1057 | dunce, isoform C [Drosophila melanogaste | 0.770 | 0.352 | 0.644 | 1e-165 |
| >gi|383854444|ref|XP_003702731.1| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase-like [Megachile rotundata] | Back alignment and taxonomy information |
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Score = 612 bits (1579), Expect = e-172, Method: Compositional matrix adjust.
Identities = 320/469 (68%), Positives = 339/469 (72%), Gaps = 99/469 (21%)
Query: 1 MLNKELSHFSES----------------NKQQELDLPALRIEDSQGSDPRSGGASSKKKD 44
MLNKELSHFSES +KQQELDLP+LRIED+ + + ++KKKD
Sbjct: 500 MLNKELSHFSESSKSGNQISEYICSTFLDKQQELDLPSLRIEDAVAAAGSADARAAKKKD 559
Query: 45 RG--GPPGRTVPMSHISGVKRPLTHTNSFTGEKLPKHGVETASEEELG------------ 90
R GP MSHISGVKRPLTHTNSFTGE++P HGVET EEELG
Sbjct: 560 RAQRGPAA----MSHISGVKRPLTHTNSFTGERVPLHGVETPHEEELGKLLSDIDKWGID 615
Query: 91 --------NNR-------------DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHA 129
NNR DLLK+ IP KTF+ FMMTLEDHYVKDNPFHNS HA
Sbjct: 616 IFRIGELSNNRPLTCVAYTAFQTRDLLKSLAIPPKTFVTFMMTLEDHYVKDNPFHNSLHA 675
Query: 130 ADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYND 189
ADVTQST+ LLN+PALE VFTPLEI AALFAATIHDVDHPGLTNQFLINSSSELALMYND
Sbjct: 676 ADVTQSTHTLLNTPALESVFTPLEITAALFAATIHDVDHPGLTNQFLINSSSELALMYND 735
Query: 190 ESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLL 249
ESVLENHHLAVAFKLLQNEGCDI N+ KKQ+QTLRKMVIDMVLST
Sbjct: 736 ESVLENHHLAVAFKLLQNEGCDIFVNMTKKQRQTLRKMVIDMVLST-------------- 781
Query: 250 QNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLD 309
DMSKHMSLLADLKTMVETKKVAGSGVLLLD
Sbjct: 782 ------------------------------DMSKHMSLLADLKTMVETKKVAGSGVLLLD 811
Query: 310 NYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRL 369
NYTDRIQVLENLVHCADLSNPTKPLPLYR+WV LLMEEFF QGD+ERE N+DISPMCDR
Sbjct: 812 NYTDRIQVLENLVHCADLSNPTKPLPLYRRWVSLLMEEFFLQGDREREQNMDISPMCDRH 871
Query: 370 SATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYI 418
SATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILD LEENRDWYQ+ I
Sbjct: 872 SATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDTLEENRDWYQSMI 920
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Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328789199|ref|XP_394762.4| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|332025370|gb|EGI65537.1| cAMP-specific 3',5'-cyclic phosphodiesterase [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|307169672|gb|EFN62254.1| cAMP-specific 3',5'-cyclic phosphodiesterase [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|307203122|gb|EFN82302.1| cAMP-specific 3',5'-cyclic phosphodiesterase [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|328703954|ref|XP_001947422.2| PREDICTED: cAMP-specific 3',5'-cyclic phosphodiesterase-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|242004829|ref|XP_002423279.1| cAMP-specific 3',5'-cyclic phosphodiesterase, putative [Pediculus humanus corporis] gi|212506281|gb|EEB10541.1| cAMP-specific 3',5'-cyclic phosphodiesterase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|45551404|ref|NP_726852.2| dunce, isoform D [Drosophila melanogaster] gi|45446800|gb|AAN09602.2| dunce, isoform D [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|24639470|ref|NP_726849.1| dunce, isoform I [Drosophila melanogaster] gi|45551405|ref|NP_726853.2| dunce, isoform J [Drosophila melanogaster] gi|73620981|sp|P12252.4|PDE4B_DROME RecName: Full=cAMP-specific 3',5'-cyclic phosphodiesterase; AltName: Full=Learning/memory process protein; AltName: Full=Protein dunce gi|22833012|gb|AAN09600.1| dunce, isoform I [Drosophila melanogaster] gi|45446798|gb|AAN09603.2| dunce, isoform J [Drosophila melanogaster] | Back alignment and taxonomy information |
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| >gi|24639472|ref|NP_726850.1| dunce, isoform C [Drosophila melanogaster] gi|22833013|gb|AAF45861.2| dunce, isoform C [Drosophila melanogaster] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 484 | ||||||
| FB|FBgn0000479 | 1209 | dnc "dunce" [Drosophila melano | 0.811 | 0.325 | 0.556 | 1.7e-107 | |
| UNIPROTKB|Q684M5 | 620 | PDE4A "Phosphodiesterase 4A, c | 0.814 | 0.635 | 0.454 | 6.6e-102 | |
| UNIPROTKB|E1C104 | 394 | PDE4D "Uncharacterized protein | 0.787 | 0.967 | 0.464 | 9.1e-88 | |
| ZFIN|ZDB-GENE-030131-4075 | 688 | pde4cb "phosphodiesterase 4C, | 0.376 | 0.264 | 0.718 | 1.1e-78 | |
| RGD|3279 | 844 | Pde4a "phosphodiesterase 4A, c | 0.460 | 0.264 | 0.658 | 2.2e-84 | |
| UNIPROTKB|P54748 | 844 | Pde4a "cAMP-specific 3',5'-cyc | 0.460 | 0.264 | 0.658 | 2.2e-84 | |
| ZFIN|ZDB-GENE-081105-16 | 725 | pde4d "phosphodiesterase 4D, c | 0.904 | 0.604 | 0.439 | 9.1e-84 | |
| UNIPROTKB|E2RCC1 | 818 | PDE4A "Uncharacterized protein | 0.814 | 0.481 | 0.453 | 3.6e-82 | |
| UNIPROTKB|E2RCU2 | 870 | PDE4A "Uncharacterized protein | 0.814 | 0.452 | 0.453 | 3.6e-82 | |
| UNIPROTKB|D6RHE0 | 422 | PDE4D "cAMP-specific 3',5'-cyc | 0.816 | 0.936 | 0.470 | 4.5e-82 |
| FB|FBgn0000479 dnc "dunce" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 999 (356.7 bits), Expect = 1.7e-107, Sum P(2) = 1.7e-107
Identities = 228/410 (55%), Positives = 272/410 (66%)
Query: 13 NKQQELDLPALRIEDSQ---GSDPRSGGASSKKKDRGGPPGRTVPMSHISGVKRPLTHTN 69
+KQQE DLP+LR+ED+ ++ +G S+ + R P R PMS ISGVKRPL+HTN
Sbjct: 725 DKQQEFDLPSLRVEDNPELVAANAAAGQQSAGQYARSRSP-RGPPMSQISGVKRPLSHTN 783
Query: 70 SFTGEKLPKHGVETASEEELGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHA 129
SFTGE+LP GVET E ELG L T+ I + F + V F +
Sbjct: 784 SFTGERLPTFGVETPRENELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELL 843
Query: 130 ADVTQSTNVLLN-SPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYN 188
+ LN LED + + F ++H D TN L+N+ + L ++
Sbjct: 844 TSLMIPPKTFLNFMSTLEDHY----VKDNPFHNSLHAADVTQSTN-VLLNTPA-LEGVFT 897
Query: 189 DESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKL 248
V A + + G +N + L M D + + + +LAVAFKL
Sbjct: 898 PLEV-GGALFAACIHDVDHPGLTNQFLVNSSSELAL--MYND---ESVLENHHLAVAFKL 951
Query: 249 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL 308
LQN+GCDI CN+ KKQ+QTLRKMVID+VLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL
Sbjct: 952 LQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLL 1011
Query: 309 DNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDR 368
DNYTDRIQVLENLVHCADLSNPTKPLPLY++WV LLMEEFF QGDKERE +DISPMCDR
Sbjct: 1012 DNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEEFFLQGDKERESGMDISPMCDR 1071
Query: 369 LSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNYI 418
+ATIEKSQVGFIDYIVHPLWETWADLVHPDAQ+ILD LEENRD+YQ+ I
Sbjct: 1072 HNATIEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEENRDYYQSMI 1121
|
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| UNIPROTKB|Q684M5 PDE4A "Phosphodiesterase 4A, cAMP-specific" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C104 PDE4D "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-4075 pde4cb "phosphodiesterase 4C, cAMP-specific b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| RGD|3279 Pde4a "phosphodiesterase 4A, cAMP-specific" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P54748 Pde4a "cAMP-specific 3',5'-cyclic phosphodiesterase 4A" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| ZFIN|ZDB-GENE-081105-16 pde4d "phosphodiesterase 4D, cAMP-specific" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RCC1 PDE4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RCU2 PDE4A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|D6RHE0 PDE4D "cAMP-specific 3',5'-cyclic phosphodiesterase 4D" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q01063 | PDE4D_MOUSE | 3, ., 1, ., 4, ., 1, 7 | 0.5353 | 0.7293 | 0.4725 | yes | N/A |
| P12252 | PDE4B_DROME | 3, ., 1, ., 4, ., 1, 7 | 0.6446 | 0.7706 | 0.3485 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.4.35 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.4.17 | 0.914 |
| 3rd Layer | 3.1.4 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 484 | |||
| pfam00233 | 237 | pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosph | 1e-119 | |
| smart00471 | 124 | smart00471, HDc, Metal dependent phosphohydrolases | 6e-07 | |
| cd00077 | 145 | cd00077, HDc, Metal dependent phosphohydrolases wi | 9e-06 |
| >gnl|CDD|109297 pfam00233, PDEase_I, 3'5'-cyclic nucleotide phosphodiesterase | Back alignment and domain information |
|---|
Score = 349 bits (898), Expect = e-119
Identities = 148/289 (51%), Positives = 180/289 (62%), Gaps = 52/289 (17%)
Query: 123 FHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSE 182
+HN HAADVTQ+T++LL + ALE T LEI+A LFAA IHDVDH G N F INS SE
Sbjct: 1 YHNWRHAADVTQTTHLLLLTLALERYLTDLEILALLFAAAIHDVDHRGTNNSFQINSKSE 60
Query: 183 LALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNL 242
LA++YNDESVLENHHLA AFKLLQ+E C+I NL+KK QTLR +VI+M+L+TD
Sbjct: 61 LAILYNDESVLENHHLAQAFKLLQDEECNIFQNLSKKDFQTLRDLVIEMILATD------ 114
Query: 243 AVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAG 302
MS H L DLKTMVE KK
Sbjct: 115 --------------------------------------MSLHFQKLKDLKTMVEQKKRL- 135
Query: 303 SGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDI 362
+ +I +L L+H ADLSNPTKP L+R+W +L+MEEFF QGD EREL L
Sbjct: 136 -------DLDHKILLLSLLMHAADLSNPTKPWKLHRRWAELIMEEFFDQGDLERELGLPP 188
Query: 363 SPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENR 411
SPMCDR SA + KSQVGFID+IV P+++ AD+V D Q +LD +E+NR
Sbjct: 189 SPMCDRTSAYVPKSQVGFIDFIVEPIFKLLADVVEKDIQPLLDTIEDNR 237
|
Length = 237 |
| >gnl|CDD|214679 smart00471, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >gnl|CDD|238032 cd00077, HDc, Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| KOG3689|consensus | 707 | 100.0 | ||
| PF00233 | 237 | PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase | 100.0 | |
| KOG3688|consensus | 554 | 100.0 | ||
| KOG1229|consensus | 775 | 100.0 | ||
| cd00077 | 145 | HDc Metal dependent phosphohydrolases with conserv | 98.13 | |
| smart00471 | 124 | HDc Metal dependent phosphohydrolases with conserv | 96.31 | |
| PF00233 | 237 | PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase | 95.4 | |
| KOG3689|consensus | 707 | 92.82 | ||
| PF01966 | 122 | HD: HD domain; InterPro: IPR006674 This domain is | 92.64 | |
| KOG3688|consensus | 554 | 91.91 | ||
| PRK10119 | 231 | putative hydrolase; Provisional | 90.95 | |
| COG0232 | 412 | Dgt dGTP triphosphohydrolase [Nucleotide transport | 89.26 | |
| KOG1229|consensus | 775 | 86.0 | ||
| COG1078 | 421 | HD superfamily phosphohydrolases [General function | 85.91 | |
| TIGR00277 | 80 | HDIG uncharacterized domain HDIG. This domain is f | 85.79 | |
| PRK01286 | 336 | deoxyguanosinetriphosphate triphosphohydrolase-lik | 84.15 | |
| PRK01759 | 854 | glnD PII uridylyl-transferase; Provisional | 82.56 | |
| TIGR01353 | 381 | dGTP_triPase deoxyguanosinetriphosphate triphospho | 82.43 |
| >KOG3689|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-90 Score=752.59 Aligned_cols=318 Identities=51% Similarity=0.809 Sum_probs=296.5
Q ss_pred CCccccCCCccccccCCCCCCCCCccccccchHHhh----------------------------------------hhhh
Q psy7867 54 PMSHISGVKRPLTHTNSFTGEKLPKHGVETASEEEL----------------------------------------GNNR 93 (484)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----------------------------------------~~~~ 93 (484)
.|+.++|+..-.+|+.+-...+.|+++|.++-+.+. ++++
T Consensus 321 ~~~~~~gl~i~~~~~y~~~~~s~~r~~v~~e~l~~h~~~~~~e~~~~~~~~~~l~d~~f~d~~~~~~~l~~~~~~mf~~l 400 (707)
T KOG3689|consen 321 AFTIFCGLSIHNTHMYSKINKSEPRQGVALEFLSYHAKALEEEVQWGPATILKLLDFFFSDRLLSENELTKCTFRMFQDL 400 (707)
T ss_pred HHHHHHhhhhhhhhhHHHHhhhccccchhHHHHHHHHhhhHHhhcccchhhhccccceeccccCCCchHHHHHHHHHHHc
Confidence 477788887755666555677778887777665443 3399
Q ss_pred hhhhhcCCCHHHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCch
Q psy7867 94 DLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTN 173 (484)
Q Consensus 94 ~L~~~f~I~~~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN 173 (484)
|++++|+|+.++|++||.+|+++||++||||||+||+||+|+||++|..+.+..+||++|+||+++||+||||||||+||
T Consensus 401 ~lv~~f~I~~~tL~r~lltV~k~Yr~~v~YHNw~HAf~VaQ~m~~lL~t~~L~~~fTdlEiLalliAalcHDlDHrGtNN 480 (707)
T KOG3689|consen 401 GLVKKFKIDVETLCRFLLTVEKNYRSNVPYHNWRHAFDVAQAMFALLKTPKLQNKFTDLEILALLIAALCHDLDHRGTNN 480 (707)
T ss_pred CcceeeccCHHHHHHHHhhhhhccccCCcchhHHHHHHHHHHHHHHHhchhHHhhcChHHHHHHHHHHHHccCCCCCCCc
Confidence 99999999999999999999999966999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcChhhhhcCCCchhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhccc
Q psy7867 174 QFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEG 253 (484)
Q Consensus 174 ~Fli~t~s~LA~lYnD~SVLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~~l~~~~ 253 (484)
.|++|++||||.+|||.|||||||++++++||++++||||+||
T Consensus 481 ~f~iks~s~LA~lY~~~SvLE~HH~~~~~~lLqe~~~nIfsnL------------------------------------- 523 (707)
T KOG3689|consen 481 SYLIKSNSPLAQLYNDSSVLENHHFAQAFKLLQEEGCNIFSNL------------------------------------- 523 (707)
T ss_pred HHHHhcCCHHHHHhCCccHHHHHHHHHHHHHHhccccchhhcC-------------------------------------
Confidence 9999999999999999999999999999999999999999999
Q ss_pred cccccccCHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhccCCCcccCCChhHHHHHHHHHHhhcCCCCCCCC
Q psy7867 254 CDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKP 333 (484)
Q Consensus 254 ~~il~~~~~~~~~~~r~~ii~~ILATDms~H~~~l~~lk~~~e~~k~~~~g~~~~d~~~dR~~ll~~ll~~ADISn~~rp 333 (484)
++++++.++++|+++||||||++||+++++|+++++++ |.+++++++||.++++++||||||||||||
T Consensus 524 -------s~~~~~~~~~~i~~~ILATDla~h~~~~~~lk~~v~~~-----~~~~~~~~~hr~lvl~mmmtacDLSn~TKp 591 (707)
T KOG3689|consen 524 -------SKKQYQQIRKLIIDAILATDLALHFKKRADLKEMVETK-----GVYDLENYSHRILVLAMMMTACDLSNPTKP 591 (707)
T ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----CcccccchhHHHHHHHHHHHHhhccCCcCC
Confidence 67888899999999999999999999999999999875 678899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHhcchHHHhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Q psy7867 334 LPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDW 413 (484)
Q Consensus 334 ~~v~~kWs~~l~eEFf~QGD~Er~lgl~iSp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~~~~ll~~l~~Nr~~ 413 (484)
|+++++|+++|++|||+|||+|+++|++|+|||||++.++|++|||||+|||+|+|++|++++ |+.
T Consensus 592 wei~~qwa~~I~~EFf~QGDeek~lg~~p~pmmDR~k~~vp~~QvgFid~I~~Plyet~a~l~-~~~------------- 657 (707)
T KOG3689|consen 592 WEIQKQWAELIAEEFFDQGDEEKELGLEPSPMMDRDKASVPKLQVGFIDYICIPLYETWADLV-PDA------------- 657 (707)
T ss_pred ccHHHHHHHHHHHHHHhcchHHHHcCCCCCcccccCcccCchhhhhHHHHHHHHHHHHHHHhc-cch-------------
Confidence 999999999999999999999999999999999999999999999999999999999999987 766
Q ss_pred HHHhhcCCchhhhhhccCCCHHHHHHHHHHhHHHHhhcCCCC
Q psy7867 414 YQNYIVHPLWETWADLVHPDAQEILDMLEENRDWYQSMIPPS 455 (484)
Q Consensus 414 w~~~i~~~~~e~w~d~~~~~~~~~l~~l~~n~~~~~~~~~~~ 455 (484)
+.||+.|++||+||+++++++
T Consensus 658 ---------------------~pmld~l~~Nr~~w~~l~~~~ 678 (707)
T KOG3689|consen 658 ---------------------QPMLDGLEDNREWWQSLIPES 678 (707)
T ss_pred ---------------------hhHHHHHHHhHHHHHHhhhhh
Confidence 888999999999999999866
|
|
| >PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP | Back alignment and domain information |
|---|
| >KOG3688|consensus | Back alignment and domain information |
|---|
| >KOG1229|consensus | Back alignment and domain information |
|---|
| >cd00077 HDc Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >smart00471 HDc Metal dependent phosphohydrolases with conserved 'HD' motif | Back alignment and domain information |
|---|
| >PF00233 PDEase_I: 3'5'-cyclic nucleotide phosphodiesterase; InterPro: IPR002073 The cyclic nucleotide phosphodiesterases (PDE) comprise a group of enzymes that degrade the phosphodiester bond in the second messenger molecules cAMP and cGMP | Back alignment and domain information |
|---|
| >KOG3689|consensus | Back alignment and domain information |
|---|
| >PF01966 HD: HD domain; InterPro: IPR006674 This domain is found in a superfamily of enzymes with a predicted or known phosphohydrolase activity [] | Back alignment and domain information |
|---|
| >KOG3688|consensus | Back alignment and domain information |
|---|
| >PRK10119 putative hydrolase; Provisional | Back alignment and domain information |
|---|
| >COG0232 Dgt dGTP triphosphohydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
| >KOG1229|consensus | Back alignment and domain information |
|---|
| >COG1078 HD superfamily phosphohydrolases [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00277 HDIG uncharacterized domain HDIG | Back alignment and domain information |
|---|
| >PRK01286 deoxyguanosinetriphosphate triphosphohydrolase-like protein; Provisional | Back alignment and domain information |
|---|
| >PRK01759 glnD PII uridylyl-transferase; Provisional | Back alignment and domain information |
|---|
| >TIGR01353 dGTP_triPase deoxyguanosinetriphosphate triphosphohydrolase, putative | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 484 | ||||
| 3g4g_A | 421 | Crystal Structure Of Human Phosphodiesterase 4d Wit | 1e-131 | ||
| 3g45_A | 421 | Crystal Structure Of Human Phosphodiesterase 4b Wit | 1e-126 | ||
| 1tb7_A | 332 | Catalytic Domain Of Human Phosphodiesterase 4d In C | 1e-124 | ||
| 3g4i_A | 381 | Crystal Structure Of Human Phosphodiesterase 4d Wit | 1e-124 | ||
| 2qyn_A | 328 | Crystal Structure Of Pde4d2 In Complex With Inhibit | 1e-124 | ||
| 1xom_A | 349 | Catalytic Domain Of Human Phosphodiesterase 4d In C | 1e-124 | ||
| 3sl5_A | 359 | Crystal Structure Of The Catalytic Domain Of Pde4d2 | 1e-124 | ||
| 1zkn_A | 334 | Structure Of Pde4d2-Ibmx Length = 334 | 1e-124 | ||
| 3iad_A | 377 | Crystal Structure Of Human Phosphodiesterase 4d Wit | 1e-124 | ||
| 2fm0_A | 361 | Crystal Structure Of Pde4d In Complex With L-869298 | 1e-124 | ||
| 1q9m_A | 360 | Three Dimensional Structures Of Pde4d In Complex Wi | 1e-124 | ||
| 1mkd_A | 328 | Crystal Structure Of Pde4d Catalytic Domain And Zar | 1e-123 | ||
| 2pw3_A | 327 | Structure Of The Pde4d-Camp Complex Length = 327 | 1e-123 | ||
| 2qyl_A | 337 | Crystal Structure Of Pde4b2b In Complex With Inhibi | 1e-121 | ||
| 3o0j_A | 323 | Pde4b In Complex With Ligand An2898 Length = 323 | 1e-120 | ||
| 3ly2_A | 357 | Catalytic Domain Of Human Phosphodiesterase 4b In C | 1e-120 | ||
| 1tb5_A | 381 | Catalytic Domain Of Human Phosphodiesterase 4b In C | 1e-120 | ||
| 1xlx_A | 398 | Catalytic Domain Of Human Phosphodiesterase 4b In C | 1e-120 | ||
| 2qym_A | 358 | Crystal Structure Of Unliganded Pde4c2 Length = 358 | 1e-120 | ||
| 3kkt_A | 398 | Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s, | 1e-120 | ||
| 1f0j_A | 377 | Catalytic Domain Of Human Phosphodiesterase 4b2b Le | 1e-120 | ||
| 1ro6_A | 378 | Crystal Structure Of Pde4b2b Complexed With Rolipra | 1e-120 | ||
| 3hmv_A | 378 | Catalytic Domain Of Human Phosphodiesterase 4b2b In | 1e-120 | ||
| 3d3p_A | 353 | Crystal Structure Of Pde4b Catalytic Domain In Comp | 1e-120 | ||
| 1xm4_A | 398 | Catalytic Domain Of Human Phosphodiesterase 4b In C | 1e-119 | ||
| 1xlz_A | 398 | Catalytic Domain Of Human Phosphodiesterase 4b In C | 1e-119 | ||
| 3tvx_A | 338 | The Structure Of Pde4a With Pentoxifylline At 2.84a | 1e-118 | ||
| 1xm6_A | 398 | Catalytic Domain Of Human Phosphodiesterase 4b In C | 1e-118 | ||
| 3i8v_A | 354 | Crystal Structure Of Human Pde4a With 4-(3-butoxy-4 | 1e-118 | ||
| 2qyk_A | 335 | Crystal Structure Of Pde4a10 In Complex With Inhibi | 1e-118 | ||
| 1taz_A | 365 | Catalytic Domain Of Human Phosphodiesterase 1b Leng | 1e-51 | ||
| 3ecm_A | 338 | Crystal Structure Of The Unliganded Pde8a Catalytic | 2e-45 | ||
| 1zkl_A | 353 | Multiple Determinants For Inhibitor Selectivity Of | 4e-41 | ||
| 3g3n_A | 318 | Pde7a Catalytic Domain In Complex With 3-(2,6- Difl | 4e-41 | ||
| 2yy2_A | 333 | Crystal Structure Of The Human Phosphodiesterase 9a | 1e-37 | ||
| 3qi3_A | 533 | Crystal Structure Of Pde9a(Q453e) In Complex With I | 1e-37 | ||
| 3n3z_A | 326 | Crystal Structure Of Pde9a (E406a) Mutant In Comple | 1e-37 | ||
| 2hd1_A | 326 | Crystal Structure Of Pde9 In Complex With Ibmx Leng | 2e-37 | ||
| 3dy8_A | 329 | Human Phosphodiesterase 9 In Complex With Product 5 | 2e-37 | ||
| 1so2_A | 420 | Catalytic Domain Of Human Phosphodiesterase 3b In C | 2e-33 | ||
| 1xoz_A | 364 | Catalytic Domain Of Human Phosphodiesterase 5a In C | 5e-33 | ||
| 1t9s_A | 347 | Catalytic Domain Of Human Phosphodiesterase 5a In C | 8e-33 | ||
| 2chm_A | 326 | Crystal Structure Of N2 Substituted Pyrazolo Pyrimi | 9e-33 | ||
| 3hc8_A | 324 | Investigation Of Aminopyridiopyrazinones As Pde5 In | 1e-32 | ||
| 2r8q_A | 359 | Structure Of Lmjpdeb1 In Complex With Ibmx Length = | 4e-32 | ||
| 3itm_A | 345 | Catalytic Domain Of Hpde2a Length = 345 | 4e-27 | ||
| 1z1l_A | 345 | The Crystal Structure Of The Phosphodiesterase 2a C | 4e-27 | ||
| 3ibj_A | 691 | X-Ray Structure Of Pde2a Length = 691 | 5e-27 | ||
| 3v93_A | 345 | Unliganded Structure Of Tcrpdec1 Catalytic Domain L | 1e-24 | ||
| 3bjc_A | 878 | Crystal Structure Of The Pde5a Catalytic Domain In | 1e-22 | ||
| 1t9r_A | 366 | Catalytic Domain Of Human Phosphodiesterase 5a Leng | 1e-22 | ||
| 3shy_A | 347 | Crystal Structure Of The Pde5a1 Catalytic Domain In | 2e-22 | ||
| 3b2r_A | 330 | Crystal Structure Of Pde5a1 Catalytic Domain In Com | 3e-22 | ||
| 1rkp_A | 326 | Crystal Structure Of Pde5a1-Ibmx Length = 326 | 3e-22 | ||
| 2h40_A | 326 | Crystal Structure Of The Catalytic Domain Of Unliga | 4e-22 | ||
| 1udt_A | 324 | Crystal Structure Of Human Phosphodiesterase 5 Comp | 4e-22 | ||
| 3jwq_A | 330 | Crystal Structure Of Chimeric Pde5/pde6 Catalytic D | 3e-21 | ||
| 3hqy_A | 380 | Discovery Of Novel Inhibitors Of Pde10a Length = 38 | 7e-18 | ||
| 3hqw_A | 376 | Discovery Of Novel Inhibitors Of Pde10a Length = 37 | 8e-18 | ||
| 3sn7_A | 345 | Highly Potent, Selective, And Orally Active Phospho | 9e-18 | ||
| 2wey_A | 343 | Human Pde-Papaverine Complex Obtained By Ligand Soa | 9e-18 | ||
| 4ael_A | 344 | Pde10a In Complex With The Inhibitor Az5 Length = 3 | 1e-17 | ||
| 2o8h_A | 362 | Crystal Structure Of The Catalytic Domain Of Rat Ph | 1e-17 | ||
| 4ddl_A | 338 | Pde10a Crystal Structure Complexed With Novel Inhib | 1e-17 | ||
| 4dff_A | 352 | The Sar Development Of Dihydroimidazoisoquinoline D | 1e-17 | ||
| 2y0j_A | 340 | Triazoloquinazolines As A Novel Class Of Phosphodie | 2e-17 | ||
| 2oun_A | 331 | Crystal Structure Of Pde10a2 In Complex With Amp Le | 2e-17 | ||
| 3uuo_A | 337 | The Discovery Of Potent, Selectivity, And Orally Bi | 2e-17 | ||
| 3ui7_A | 333 | Discovery Of Orally Active Pyrazoloquinoline As A P | 2e-17 | ||
| 4heu_A | 318 | Crystal Structure Of Pde10a With A Biaryl Ether Inh | 2e-17 | ||
| 3lxg_A | 308 | Crystal Structure Of Rat Phosphodiesterase 10a In C | 3e-17 | ||
| 2ouv_A | 331 | Crystal Structure Of Pde10a2 Mutant Of D564n Length | 6e-17 | ||
| 2our_A | 331 | Crystal Structure Of Pde10a2 Mutant D674a In Comple | 1e-16 |
| >pdb|3G4G|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Regulatory Domain And D155871 Length = 421 | Back alignment and structure |
|
| >pdb|3G45|A Chain A, Crystal Structure Of Human Phosphodiesterase 4b With Regulatory Domain And D155988 Length = 421 | Back alignment and structure |
| >pdb|1TB7|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex With Amp Length = 332 | Back alignment and structure |
| >pdb|3G4I|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With D155871 Length = 381 | Back alignment and structure |
| >pdb|2QYN|A Chain A, Crystal Structure Of Pde4d2 In Complex With Inhibitor Npv Length = 328 | Back alignment and structure |
| >pdb|1XOM|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4d In Complex With Cilomilast Length = 349 | Back alignment and structure |
| >pdb|3SL5|A Chain A, Crystal Structure Of The Catalytic Domain Of Pde4d2 Complexed With Compound 10d Length = 359 | Back alignment and structure |
| >pdb|1ZKN|A Chain A, Structure Of Pde4d2-Ibmx Length = 334 | Back alignment and structure |
| >pdb|3IAD|A Chain A, Crystal Structure Of Human Phosphodiesterase 4d With Bound Allosteric Modulator Length = 377 | Back alignment and structure |
| >pdb|2FM0|A Chain A, Crystal Structure Of Pde4d In Complex With L-869298 Length = 361 | Back alignment and structure |
| >pdb|1Q9M|A Chain A, Three Dimensional Structures Of Pde4d In Complex With Roliprams And Implication On Inhibitor Selectivity Length = 360 | Back alignment and structure |
| >pdb|1MKD|A Chain A, Crystal Structure Of Pde4d Catalytic Domain And Zardaverine Complex Length = 328 | Back alignment and structure |
| >pdb|2PW3|A Chain A, Structure Of The Pde4d-Camp Complex Length = 327 | Back alignment and structure |
| >pdb|2QYL|A Chain A, Crystal Structure Of Pde4b2b In Complex With Inhibitor Npv Length = 337 | Back alignment and structure |
| >pdb|3O0J|A Chain A, Pde4b In Complex With Ligand An2898 Length = 323 | Back alignment and structure |
| >pdb|3LY2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex Wi Coumarin-Based Inhibitor Length = 357 | Back alignment and structure |
| >pdb|1TB5|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Amp Length = 381 | Back alignment and structure |
| >pdb|1XLX|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Cilomilast Length = 398 | Back alignment and structure |
| >pdb|2QYM|A Chain A, Crystal Structure Of Unliganded Pde4c2 Length = 358 | Back alignment and structure |
| >pdb|3KKT|A Chain A, Crystal Structure Of Human Pde4b With 5-[3-[(1s,2s,4r)- Bicyclo[2.2.1]hept-2-Yloxy]-4-Methoxyp Henyl]tetrahydro-2(1h)- Pyrimidinone Reveals Ordering Of The C-Terminal Helix Residues 502- 509. Length = 398 | Back alignment and structure |
| >pdb|1F0J|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b Length = 377 | Back alignment and structure |
| >pdb|1RO6|A Chain A, Crystal Structure Of Pde4b2b Complexed With Rolipram (r & S) Length = 378 | Back alignment and structure |
| >pdb|3HMV|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b2b In Complex Tetrahydrobenzothiophene Inhibitor Length = 378 | Back alignment and structure |
| >pdb|3D3P|A Chain A, Crystal Structure Of Pde4b Catalytic Domain In Complex With A Pyrazolopyridine Inhibitor Length = 353 | Back alignment and structure |
| >pdb|1XM4|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Piclamilast Length = 398 | Back alignment and structure |
| >pdb|1XLZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With Filaminast Length = 398 | Back alignment and structure |
| >pdb|3TVX|A Chain A, The Structure Of Pde4a With Pentoxifylline At 2.84a Resolution Length = 338 | Back alignment and structure |
| >pdb|1XM6|A Chain A, Catalytic Domain Of Human Phosphodiesterase 4b In Complex With (R)- Mesopram Length = 398 | Back alignment and structure |
| >pdb|3I8V|A Chain A, Crystal Structure Of Human Pde4a With 4-(3-butoxy-4-methoxyphenyl) Methyl-2-imidazolidone Length = 354 | Back alignment and structure |
| >pdb|2QYK|A Chain A, Crystal Structure Of Pde4a10 In Complex With Inhibitor Npv Length = 335 | Back alignment and structure |
| >pdb|1TAZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 1b Length = 365 | Back alignment and structure |
| >pdb|3ECM|A Chain A, Crystal Structure Of The Unliganded Pde8a Catalytic Domain Length = 338 | Back alignment and structure |
| >pdb|1ZKL|A Chain A, Multiple Determinants For Inhibitor Selectivity Of Cyclic Nucleotide Phosphodiesterases Length = 353 | Back alignment and structure |
| >pdb|3G3N|A Chain A, Pde7a Catalytic Domain In Complex With 3-(2,6- Difluorophenyl)-2-(Methylthio)quinazolin-4(3h)-One Length = 318 | Back alignment and structure |
| >pdb|2YY2|A Chain A, Crystal Structure Of The Human Phosphodiesterase 9a Catalytic Domain Complexed With Ibmx Length = 333 | Back alignment and structure |
| >pdb|3QI3|A Chain A, Crystal Structure Of Pde9a(Q453e) In Complex With Inhibitor Bay73-6691 Length = 533 | Back alignment and structure |
| >pdb|3N3Z|A Chain A, Crystal Structure Of Pde9a (E406a) Mutant In Complex With Ibmx Length = 326 | Back alignment and structure |
| >pdb|2HD1|A Chain A, Crystal Structure Of Pde9 In Complex With Ibmx Length = 326 | Back alignment and structure |
| >pdb|3DY8|A Chain A, Human Phosphodiesterase 9 In Complex With Product 5'-gmp (e+p Complex) Length = 329 | Back alignment and structure |
| >pdb|1SO2|A Chain A, Catalytic Domain Of Human Phosphodiesterase 3b In Complex With A Dihydropyridazine Inhibitor Length = 420 | Back alignment and structure |
| >pdb|1XOZ|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex With Tadalafil Length = 364 | Back alignment and structure |
| >pdb|1T9S|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a In Complex With Gmp Length = 347 | Back alignment and structure |
| >pdb|2CHM|A Chain A, Crystal Structure Of N2 Substituted Pyrazolo Pyrimidinones- A Flipped Binding Mode In Pde5 Length = 326 | Back alignment and structure |
| >pdb|3HC8|A Chain A, Investigation Of Aminopyridiopyrazinones As Pde5 Inhibitors: Evaluation Of Modifications To The Central Ring System. Length = 324 | Back alignment and structure |
| >pdb|2R8Q|A Chain A, Structure Of Lmjpdeb1 In Complex With Ibmx Length = 359 | Back alignment and structure |
| >pdb|3ITM|A Chain A, Catalytic Domain Of Hpde2a Length = 345 | Back alignment and structure |
| >pdb|1Z1L|A Chain A, The Crystal Structure Of The Phosphodiesterase 2a Catalytic Domain Length = 345 | Back alignment and structure |
| >pdb|3IBJ|A Chain A, X-Ray Structure Of Pde2a Length = 691 | Back alignment and structure |
| >pdb|3V93|A Chain A, Unliganded Structure Of Tcrpdec1 Catalytic Domain Length = 345 | Back alignment and structure |
| >pdb|3BJC|A Chain A, Crystal Structure Of The Pde5a Catalytic Domain In Complex With A Novel Inhibitor Length = 878 | Back alignment and structure |
| >pdb|1T9R|A Chain A, Catalytic Domain Of Human Phosphodiesterase 5a Length = 366 | Back alignment and structure |
| >pdb|3SHY|A Chain A, Crystal Structure Of The Pde5a1 Catalytic Domain In Complex With Novel Inhibitors Length = 347 | Back alignment and structure |
| >pdb|3B2R|A Chain A, Crystal Structure Of Pde5a1 Catalytic Domain In Complex With Vardenafil Length = 330 | Back alignment and structure |
| >pdb|1RKP|A Chain A, Crystal Structure Of Pde5a1-Ibmx Length = 326 | Back alignment and structure |
| >pdb|2H40|A Chain A, Crystal Structure Of The Catalytic Domain Of Unliganded Pde5 Length = 326 | Back alignment and structure |
| >pdb|1UDT|A Chain A, Crystal Structure Of Human Phosphodiesterase 5 Complexed With Sildenafil(Viagra) Length = 324 | Back alignment and structure |
| >pdb|3JWQ|A Chain A, Crystal Structure Of Chimeric Pde5/pde6 Catalytic Domain Complexed With Sildenafil Length = 330 | Back alignment and structure |
| >pdb|3HQY|A Chain A, Discovery Of Novel Inhibitors Of Pde10a Length = 380 | Back alignment and structure |
| >pdb|3HQW|A Chain A, Discovery Of Novel Inhibitors Of Pde10a Length = 376 | Back alignment and structure |
| >pdb|3SN7|A Chain A, Highly Potent, Selective, And Orally Active Phosphodiestarase 10a Inhibitors Length = 345 | Back alignment and structure |
| >pdb|2WEY|A Chain A, Human Pde-Papaverine Complex Obtained By Ligand Soaking Of Cross-Linked Protein Crystals Length = 343 | Back alignment and structure |
| >pdb|4AEL|A Chain A, Pde10a In Complex With The Inhibitor Az5 Length = 344 | Back alignment and structure |
| >pdb|2O8H|A Chain A, Crystal Structure Of The Catalytic Domain Of Rat Phosphodiesterase 10a Length = 362 | Back alignment and structure |
| >pdb|4DDL|A Chain A, Pde10a Crystal Structure Complexed With Novel Inhibitor Length = 338 | Back alignment and structure |
| >pdb|4DFF|A Chain A, The Sar Development Of Dihydroimidazoisoquinoline Derivatives As Phosphodiesterase 10a Inhibitors For The Treatment Of Schizophrenia Length = 352 | Back alignment and structure |
| >pdb|2Y0J|A Chain A, Triazoloquinazolines As A Novel Class Of Phosphodiesterase 10a (Pde10a) Inhibitors, Part 2, Lead-Optimisation. Length = 340 | Back alignment and structure |
| >pdb|2OUN|A Chain A, Crystal Structure Of Pde10a2 In Complex With Amp Length = 331 | Back alignment and structure |
| >pdb|3UUO|A Chain A, The Discovery Of Potent, Selectivity, And Orally Bioavailable Pyrozoloquinolines As Pde10 Inhibitors For The Treatment Of Schizophrenia Length = 337 | Back alignment and structure |
| >pdb|3UI7|A Chain A, Discovery Of Orally Active Pyrazoloquinoline As A Potent Pde10 Inhibitor For The Management Of Schizophrenia Length = 333 | Back alignment and structure |
| >pdb|4HEU|A Chain A, Crystal Structure Of Pde10a With A Biaryl Ether Inhibitor ((1-(3-(4- ((1h-Benzo[d]imidazol-2-Yl)amino)phenoxy)pyridin-2- Yl)piperidin-4- Yl)methanol) Length = 318 | Back alignment and structure |
| >pdb|3LXG|A Chain A, Crystal Structure Of Rat Phosphodiesterase 10a In Complex Wi Web-3 Length = 308 | Back alignment and structure |
| >pdb|2OUV|A Chain A, Crystal Structure Of Pde10a2 Mutant Of D564n Length = 331 | Back alignment and structure |
| >pdb|2OUR|A Chain A, Crystal Structure Of Pde10a2 Mutant D674a In Complex With Camp Length = 331 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... Length = 349 | Back alignment and structure |
|---|
Score = 399 bits (1028), Expect = e-138
Identities = 220/386 (56%), Positives = 261/386 (67%), Gaps = 77/386 (19%)
Query: 66 THTNSFTGEKLPKHGVETASEEELG---------------------------------NN 92
H + + +P+ T E+ L
Sbjct: 5 HHHHHHSSGLVPRGSHMTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQE 64
Query: 93 RDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPL 152
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT L
Sbjct: 65 RDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDL 124
Query: 153 EIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDI 212
EI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHLAV FKLLQ E CDI
Sbjct: 125 EILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDI 184
Query: 213 LCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKMV 272
NL KKQ+Q+LRKMVID+VL+TD
Sbjct: 185 FQNLTKKQRQSLRKMVIDIVLATD------------------------------------ 208
Query: 273 IDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTK 332
MSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNPTK
Sbjct: 209 --------MSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTK 260
Query: 333 PLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETW 392
PL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWETW
Sbjct: 261 PLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETW 320
Query: 393 ADLVHPDAQEILDMLEENRDWYQNYI 418
ADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 321 ADLVHPDAQDILDTLEDNREWYQSTI 346
|
| >3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Length = 421 | Back alignment and structure |
|---|
| >1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Length = 377 | Back alignment and structure |
|---|
| >1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... Length = 347 | Back alignment and structure |
|---|
| >1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Length = 353 | Back alignment and structure |
|---|
| >1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Length = 365 | Back alignment and structure |
|---|
| >3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A* Length = 338 | Back alignment and structure |
|---|
| >3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 3n3z_A* Length = 329 | Back alignment and structure |
|---|
| >3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* Length = 345 | Back alignment and structure |
|---|
| >3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* Length = 533 | Back alignment and structure |
|---|
| >3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Length = 345 | Back alignment and structure |
|---|
| >2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Length = 359 | Back alignment and structure |
|---|
| >2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... Length = 331 | Back alignment and structure |
|---|
| >3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Length = 380 | Back alignment and structure |
|---|
| >1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Length = 420 | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Length = 691 | Back alignment and structure |
|---|
| >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Length = 878 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| 3g4g_A | 421 | DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi | 100.0 | |
| 1f0j_A | 377 | PDE4B, phosphodiesterase 4B; PDE phosphodiesterase | 100.0 | |
| 1y2k_A | 349 | DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi | 100.0 | |
| 3dyn_A | 329 | High affinity CGMP-specific 3',5'-cyclic phosphod | 100.0 | |
| 3itu_A | 345 | CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- | 100.0 | |
| 3ecm_A | 338 | High affinity CAMP-specific and IBMX-insensitive 3 | 100.0 | |
| 3hr1_A | 380 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod | 100.0 | |
| 3v93_A | 345 | Cyclic nucleotide specific phosphodiesterase; para | 100.0 | |
| 2our_A | 331 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod | 100.0 | |
| 1tbf_A | 347 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 100.0 | |
| 3qi3_A | 533 | High affinity CGMP-specific 3',5'-cyclic phosphod | 100.0 | |
| 1zkl_A | 353 | HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl | 100.0 | |
| 2r8q_A | 359 | Class I phosphodiesterase PDEB1; leishimaniasis, p | 100.0 | |
| 1taz_A | 365 | Calcium/calmodulin-dependent 3',5'-cyclic nucleot | 100.0 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 100.0 | |
| 1so2_A | 420 | CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P | 100.0 | |
| 3bjc_A | 878 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 100.0 | |
| 3itu_A | 345 | CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn- | 96.31 | |
| 1so2_A | 420 | CGMP-inhibited 3',5'-cyclic phosphodiesterase B; P | 96.01 | |
| 3v93_A | 345 | Cyclic nucleotide specific phosphodiesterase; para | 95.95 | |
| 3dyn_A | 329 | High affinity CGMP-specific 3',5'-cyclic phosphod | 95.84 | |
| 1zkl_A | 353 | HCP1, TM22, high-affinity CAMP-specific 3',5'-cycl | 95.78 | |
| 1tbf_A | 347 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 95.77 | |
| 2our_A | 331 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod | 95.74 | |
| 3hr1_A | 380 | CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod | 95.67 | |
| 1y2k_A | 349 | DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi | 95.56 | |
| 1f0j_A | 377 | PDE4B, phosphodiesterase 4B; PDE phosphodiesterase | 95.56 | |
| 3ecm_A | 338 | High affinity CAMP-specific and IBMX-insensitive 3 | 95.46 | |
| 2r8q_A | 359 | Class I phosphodiesterase PDEB1; leishimaniasis, p | 95.42 | |
| 3g4g_A | 421 | DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodi | 95.38 | |
| 3qi3_A | 533 | High affinity CGMP-specific 3',5'-cyclic phosphod | 95.18 | |
| 3ibj_A | 691 | CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE | 95.17 | |
| 3djb_A | 223 | Hydrolase, HD family; all alpha-helical protein., | 95.03 | |
| 1taz_A | 365 | Calcium/calmodulin-dependent 3',5'-cyclic nucleot | 94.97 | |
| 3dto_A | 223 | BH2835 protein; all alpha-helical protein, structu | 94.8 | |
| 2pjq_A | 231 | Uncharacterized protein LP_2664; LPR71, NESG, stru | 93.94 | |
| 3bjc_A | 878 | CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 | 93.81 | |
| 2qgs_A | 225 | Protein Se1688; alpha-helical protein, structural | 92.91 | |
| 3u1n_A | 528 | SAM domain and HD domain-containing protein 1; deo | 92.13 | |
| 3irh_A | 480 | HD domain protein; phosphohydrolase, dntpase, stru | 92.05 | |
| 2pgs_A | 451 | Putative deoxyguanosinetriphosphate triphosphohyd; | 91.57 | |
| 2pq7_A | 220 | Predicted HD superfamily hydrolase; 104161995, HD | 91.51 | |
| 3b57_A | 209 | LIN1889 protein; Q92AN1, X-RAY, NESG, structural g | 91.0 | |
| 2hek_A | 371 | Hypothetical protein; predominantly alpha helical | 90.53 | |
| 3bg2_A | 444 | DGTP triphosphohydrolase; structural genomics, NYS | 90.25 | |
| 2q14_A | 410 | Phosphohydrolase; BT4208, HD domain, structural ge | 88.34 | |
| 3gw7_A | 239 | Uncharacterized protein YEDJ; all alpha-helical pr | 88.18 | |
| 2o08_A | 188 | BH1327 protein; putative HD superfamily hydrolase, | 87.17 | |
| 2dqb_A | 376 | Deoxyguanosinetriphosphate triphosphohydrolase, P; | 84.77 | |
| 2ogi_A | 196 | Hypothetical protein SAG1661; structural genomics, | 82.15 | |
| 3ccg_A | 190 | HD superfamily hydrolase; NP_347894.1, HD domain, | 81.66 |
| >3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-103 Score=817.97 Aligned_cols=349 Identities=70% Similarity=1.132 Sum_probs=270.6
Q ss_pred CccccccCcccc----------------ccccccccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCccccCCCcc
Q psy7867 1 MLNKELSHFSES----------------NKQQELDLPALRIEDSQGSDPRSGGASSKKKDRGGPPGRTVPMSHISGVKRP 64 (484)
Q Consensus 1 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (484)
||||||+||||+ |||+|+++|+ |+.++ ++++|++||||+|
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~--------~~~~~~~~~~~~~- 69 (421)
T 3g4g_A 14 MLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPK---------------VTAEE--------APQPMSQISGVKK- 69 (421)
T ss_dssp ----------------CHHHHHHHHHSCC---------------------------------------------------
T ss_pred HHhHHhhhhhhhccCcchHHHHHHhhccCccccccCCC---------------ccccc--------ccccchhccCccc-
Confidence 899999999997 9999999999 44442 3468999999999
Q ss_pred ccccCCCCCCCCCccccccchHHhhhh---------------------------------hhhhhhhcCCCHHHHHHHHH
Q psy7867 65 LTHTNSFTGEKLPKHGVETASEEELGN---------------------------------NRDLLKTFLIPAKTFINFMM 111 (484)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~l~~---------------------------------~~~L~~~f~I~~~~L~~Fl~ 111 (484)
++|++++.++.+|++||.+.+|..+++ ++||+++|+|+.++|.+||.
T Consensus 70 ~~~~~~~~~~~~~~~~v~~~~~~~l~~~L~~i~~W~fdiF~l~~~s~~~~L~~l~~~iF~~~~L~~~f~I~~~~L~~FL~ 149 (421)
T 3g4g_A 70 LMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLM 149 (421)
T ss_dssp ---------------------CCHHHHHGGGTTSTTCCHHHHHHHTTSCHHHHHHHHHHHHTTHHHHHTCCHHHHHHHHH
T ss_pred cCccccccCCCCCcCCCCCccHHHHHhhhcccCcCCCCcccHHHhcCCCchHHHHHHHHHhCCcHhhcCCCHHHHHHHHH
Confidence 999999999999999999999877644 88999999999999999999
Q ss_pred HHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCCCCCchHHHHhhcChhhhhcCCCc
Q psy7867 112 TLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDES 191 (484)
Q Consensus 112 ~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdHPG~nN~Fli~t~s~LA~lYnD~S 191 (484)
.|+++|+.+||||||.||+||+|++|+++..+++...|+++|++|+++||+|||+||||+||.|++++++|||++|||.|
T Consensus 150 ~ve~~Y~~~~pYHN~~HA~dV~Q~~~~ll~~~~l~~~ls~le~lalliAAl~HDvdHpG~nN~Fli~t~s~LA~lYnD~S 229 (421)
T 3g4g_A 150 TLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSS 229 (421)
T ss_dssp HHHHTSCSSCSSSSHHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHHTTSS
T ss_pred HHHHcccCCCCCcCcHHHhHHHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHhcCCCCCCCCHHHHHcCCHHHHHcCCCc
Confidence 99999965899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHHhhccccccccccCHHHHHHHHHH
Q psy7867 192 VLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRKM 271 (484)
Q Consensus 192 VLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~~l~~~~~~il~~~~~~~~~~~r~~ 271 (484)
||||||++++|+||++++||||++| ++++++.+|++
T Consensus 230 VLEnhH~a~~f~LL~~~~~nIf~~L--------------------------------------------~~~e~~~~r~l 265 (421)
T 3g4g_A 230 VLENHHLAVGFKLLQEENCDIFQNL--------------------------------------------TKKQRQSLRKM 265 (421)
T ss_dssp HHHHHHHHHHHHGGGSTTCCTTTTS--------------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccchhhhcC--------------------------------------------CHHHHHHHHHH
Confidence 9999999999999999999999999 67788889999
Q ss_pred HHHHHhccchhhhhHHHHHHHHHHHhhhccCCCcccCCChhHHHHHHHHHHhhcCCCCCCCChhHHHHHHHHHHHHHHhc
Q psy7867 272 VIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYRKWVDLLMEEFFQQ 351 (484)
Q Consensus 272 ii~~ILATDms~H~~~l~~lk~~~e~~k~~~~g~~~~d~~~dR~~ll~~ll~~ADISn~~rp~~v~~kWs~~l~eEFf~Q 351 (484)
||++||||||++||+++++|+++++++++++.|.+.++++++|.++++++|||||||||+|||+++++|+.+|++|||+|
T Consensus 266 ii~~ILATDMa~Hf~~l~~~k~~~~~~~~~~~g~~~~~~~~dr~~ll~~lik~ADISn~~rp~~v~~~Wa~~l~eEFf~Q 345 (421)
T 3g4g_A 266 VIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQ 345 (421)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHHHTCCBCTTCCBCCCSHHHHHHHHHHHHHHHHTCGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHhccccCcccccccCChHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998888778888889999999999999999999999999999999999999999999
Q ss_pred chHHHhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHh
Q psy7867 352 GDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLEENRDWYQNY 417 (484)
Q Consensus 352 GD~Er~lgl~iSp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~~~~ll~~l~~Nr~~w~~~ 417 (484)
||+||++|+|+||+|||.+.++|++|+|||++||.|||++|+++++|++++++++|++||++|++.
T Consensus 346 GD~Ek~~Glp~sp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~l~~~ld~l~~Nr~~w~~~ 411 (421)
T 3g4g_A 346 GDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQST 411 (421)
T ss_dssp HHHHHHTTCCCCTTCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHTT
T ss_pred hhHHHhcCCCCCCcCCccccchHHHHHHHHHHHHHHHHHHHHHHhcHhHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999987798855555554444444443
|
| >1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... | Back alignment and structure |
|---|
| >1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... | Back alignment and structure |
|---|
| >3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A* | Back alignment and structure |
|---|
| >3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A | Back alignment and structure |
|---|
| >3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A* | Back alignment and structure |
|---|
| >3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* | Back alignment and structure |
|---|
| >3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* | Back alignment and structure |
|---|
| >2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... | Back alignment and structure |
|---|
| >1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... | Back alignment and structure |
|---|
| >3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* | Back alignment and structure |
|---|
| >1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* | Back alignment and structure |
|---|
| >2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} | Back alignment and structure |
|---|
| >1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* | Back alignment and structure |
|---|
| >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* | Back alignment and structure |
|---|
| >3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A | Back alignment and structure |
|---|
| >1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* | Back alignment and structure |
|---|
| >3v93_A Cyclic nucleotide specific phosphodiesterase; parasite, phosphodiesterases,, hydrolase; 2.00A {Trypanosoma cruzi} PDB: 3v94_A* | Back alignment and structure |
|---|
| >3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; phophodiestrase, enzyme mechanism, hydrolase, manganes binding, phosphoprotein; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* 4gh6_A* 3n3z_A* | Back alignment and structure |
|---|
| >1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* | Back alignment and structure |
|---|
| >1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3tge_A* 3tgg_A* 3hc8_A* 3hdz_A* 1t9r_A* 3sie_A* 3shy_A* 3shz_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* ... | Back alignment and structure |
|---|
| >2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 3sn7_A* 3sni_A* 3snl_A* 4dff_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 4ael_A* 2y0j_A* 4ddl_A* 3uuo_A* 3ui7_A* 2o8h_A* 2ovv_A* 2ovy_A* ... | Back alignment and structure |
|---|
| >3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* | Back alignment and structure |
|---|
| >1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 3sl5_A* 3sl4_A* 2fm5_A* 3sl3_A* 2fm0_A* 3sl6_A* 3sl8_A* 1oyn_A* ... | Back alignment and structure |
|---|
| >1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... | Back alignment and structure |
|---|
| >3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} SCOP: a.211.1.0 PDB: 3ecn_A* | Back alignment and structure |
|---|
| >2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} | Back alignment and structure |
|---|
| >3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* | Back alignment and structure |
|---|
| >3qi3_A High affinity CGMP-specific 3',5'-cyclic phosphod 9A; mutation, glutamine switch, hydrolase-hydrolase inhibitor CO; HET: PDB; 2.30A {Homo sapiens} PDB: 3qi4_A* | Back alignment and structure |
|---|
| >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} | Back alignment and structure |
|---|
| >3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleot phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 | Back alignment and structure |
|---|
| >3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* | Back alignment and structure |
|---|
| >2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein S initiative, northeast structural genomics consortium; 2.00A {Staphylococcus epidermidis} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3u1n_A SAM domain and HD domain-containing protein 1; deoxynucleotide triphosphohydrolase, hydrolase; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
| >3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, P protein structure initiative, midwest center for structural genomics; HET: DGT DTP; 2.40A {Enterococcus faecalis} PDB: 2o6i_A* | Back alignment and structure |
|---|
| >2pgs_A Putative deoxyguanosinetriphosphate triphosphohyd; deoxyguanosinetriphosphate triphsphohydrolase, pseudomonas S PV. phaseolicola 1448A; 2.35A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
| >2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site AN site being FAR from EACH other, structural genomics, PSI; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 | Back alignment and structure |
|---|
| >3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, triphosphohydro PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis} | Back alignment and structure |
|---|
| >2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, JO center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
| >3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} | Back alignment and structure |
|---|
| >2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
| >2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, P; dntpase, DNTP, single-stranded DNA, DNA dGTPase, HD superfamily, structural genomics; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2ogi_A Hypothetical protein SAG1661; structural genomics, joint center for structural genomics, J protein structure initiative; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
| >3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 484 | ||||
| d1y2ka1 | 326 | a.211.1.2 (A:86-411) Catalytic domain of cyclic nu | 1e-104 | |
| d3dy8a1 | 324 | a.211.1.2 (A:182-505) High-affinity cGMP-specific | 2e-93 | |
| d1taza_ | 357 | a.211.1.2 (A:) Catalytic domain of cyclic nucleoti | 1e-92 | |
| d1tbfa_ | 326 | a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphod | 2e-91 | |
| d1so2a_ | 415 | a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phospho | 1e-88 |
| >d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} Length = 326 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: Catalytic domain of cyclic nucleotide phosphodiesterase pde4d species: Human (Homo sapiens) [TaxId: 9606]
Score = 311 bits (798), Expect = e-104
Identities = 215/328 (65%), Positives = 251/328 (76%), Gaps = 44/328 (13%)
Query: 91 NNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFT 150
RDLLKTF IP T I ++MTLEDHY D +HN+ HAADV QST+VLL++PALE VFT
Sbjct: 42 QERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFT 101
Query: 151 PLEIMAALFAATIHDVDHPGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGC 210
LEI+AA+FA+ IHDVDHPG++NQFLIN++SELALMYND SVLENHHLAV FKLLQ E C
Sbjct: 102 DLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENC 161
Query: 211 DILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKLLQNEGCDILCNLNKKQKQTLRK 270
DI NL KKQ+Q+LRKMVID+VL+TD
Sbjct: 162 DIFQNLTKKQRQSLRKMVIDIVLATD---------------------------------- 187
Query: 271 MVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLSNP 330
MSKHM+LLADLKTMVETKKV SGVLLLDNY+DRIQVL+N+VHCADLSNP
Sbjct: 188 ----------MSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLSNP 237
Query: 331 TKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWE 390
TKPL LYR+W D +MEEFF+QGD+ERE ++ISPMCD+ +A++EKSQVGFIDYIVHPLWE
Sbjct: 238 TKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWE 297
Query: 391 TWADLVHPDAQEILDMLEENRDWYQNYI 418
TWADLVHPDAQ+ILD LE+NR+WYQ+ I
Sbjct: 298 TWADLVHPDAQDILDTLEDNREWYQSTI 325
|
| >d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
| >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} Length = 357 | Back information, alignment and structure |
|---|
| >d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} Length = 326 | Back information, alignment and structure |
|---|
| >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} Length = 415 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 484 | |||
| d1y2ka1 | 326 | Catalytic domain of cyclic nucleotide phosphodiest | 100.0 | |
| d1so2a_ | 415 | cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p | 100.0 | |
| d1taza_ | 357 | Catalytic domain of cyclic nucleotide phosphodiest | 100.0 | |
| d3dy8a1 | 324 | High-affinity cGMP-specific 3',5'-cyclic phosphodi | 100.0 | |
| d1tbfa_ | 326 | cGMP-specific 3',5'-cyclic phosphodiesterase pde5a | 100.0 | |
| d1so2a_ | 415 | cGMP-inhibited 3',5'-cyclic phosphodiesterase B, p | 96.28 | |
| d3dtoa1 | 212 | Uncharacterized protein BH2835 {Bacillus haloduran | 95.62 | |
| d2pq7a1 | 217 | Predicted hydrolase mes0020 {Uncultured thermotoga | 95.33 | |
| d3djba1 | 213 | Uncharacterized protein BT9727_1981 {Bacillus thur | 95.29 | |
| d3b57a1 | 201 | Uncharacterized protein Lin1889 {Listeria innocua | 95.16 | |
| d1taza_ | 357 | Catalytic domain of cyclic nucleotide phosphodiest | 94.95 | |
| d3dy8a1 | 324 | High-affinity cGMP-specific 3',5'-cyclic phosphodi | 94.81 | |
| d1tbfa_ | 326 | cGMP-specific 3',5'-cyclic phosphodiesterase pde5a | 94.42 | |
| d2pjqa1 | 215 | Uncharacterized protein LP2664 {Lactobacillus plan | 93.88 | |
| d2o6ia1 | 453 | Hypothetical protein EF1143 {Enterococcus faecalis | 93.17 | |
| d2qgsa1 | 216 | Uncharacterized protein SE1688 {Staphylococcus epi | 93.09 | |
| d1y2ka1 | 326 | Catalytic domain of cyclic nucleotide phosphodiest | 92.92 | |
| d2heka1 | 369 | Hypothetical protein aq_1910 {Aquifex aeolicus [Ta | 89.52 |
| >d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: HD-domain/PDEase-like superfamily: HD-domain/PDEase-like family: PDEase domain: Catalytic domain of cyclic nucleotide phosphodiesterase pde4d species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.6e-82 Score=644.42 Aligned_cols=286 Identities=75% Similarity=1.197 Sum_probs=274.9
Q ss_pred hhhhhhhhhhcCCCHHHHHHHHHHHHHhcCCCCCCCCcchhhhHHHHHHHHhhcccccccCcHHHHHHHHHHhhhccCCC
Q psy7867 89 LGNNRDLLKTFLIPAKTFINFMMTLEDHYVKDNPFHNSTHAADVTQSTNVLLNSPALEDVFTPLEIMAALFAATIHDVDH 168 (484)
Q Consensus 89 l~~~~~L~~~f~I~~~~L~~Fl~~v~~~Y~~~npYHN~~HAaDV~Q~~~~lL~~~~l~~~lt~lE~lAlliAAl~HDvdH 168 (484)
++..+|++++|+|+.++|.+|+..|+++|+.+||||||+||+||+|++|++|..+++...|+++|++|+++||+|||+||
T Consensus 40 if~~~~l~~~~~i~~~~l~~Fl~~v~~~Y~~~~pyHN~~HA~dV~q~~~~ll~~~~l~~~l~~~e~~alliAal~HDv~H 119 (326)
T d1y2ka1 40 IFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDH 119 (326)
T ss_dssp HHHHTTHHHHTTCCHHHHHHHHHHHHHTSCTTCSSSSHHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTC
T ss_pred HHHHCCcHhhcCCCHHHHHHHHHHHHHhcCCCCCCccHHHHHHHHHHHHHHHhccchhhhCCHHHHHHHHHHHHHhccCC
Confidence 56799999999999999999999999999657999999999999999999999999999999999999999999999999
Q ss_pred CCCchHHHHhhcChhhhhcCCCchhhhhhHHHHHHHHhhhcchhcccCCHHHHHHHHHHHHHHHhhccchhhHHHHHHHH
Q psy7867 169 PGLTNQFLINSSSELALMYNDESVLENHHLAVAFKLLQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDIRSQNLAVAFKL 248 (484)
Q Consensus 169 PG~nN~Fli~t~s~LA~lYnD~SVLEnhH~a~af~LL~~~~~nif~~l~~~~~~~~Rk~VI~mILATDMa~~~~~~~f~~ 248 (484)
||+||.|++++++|||++|||.|||||||++++++||++++||||.++
T Consensus 120 pG~~N~fl~~~~~~la~~y~d~SvLE~~H~~~~~~ll~~~~~~i~~~l-------------------------------- 167 (326)
T d1y2ka1 120 PGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNL-------------------------------- 167 (326)
T ss_dssp CSSCHHHHHHTTCHHHHHHTTSSHHHHHHHHHHHHGGGSTTCCTTTTS--------------------------------
T ss_pred CCCCchHHHhcCCHHHHHcCCCchhhHHHHHHHHHHHhCcccchhhCC--------------------------------
Confidence 999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccccCHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHhhhccCCCcccCCChhHHHHHHHHHHhhcCCC
Q psy7867 249 LQNEGCDILCNLNKKQKQTLRKMVIDMVLSTDMSKHMSLLADLKTMVETKKVAGSGVLLLDNYTDRIQVLENLVHCADLS 328 (484)
Q Consensus 249 l~~~~~~il~~~~~~~~~~~r~~ii~~ILATDms~H~~~l~~lk~~~e~~k~~~~g~~~~d~~~dR~~ll~~ll~~ADIS 328 (484)
++++++.+|++++++||||||++|++++++++..++.++..+.|.+..+++++|.++++++|||||||
T Consensus 168 ------------~~~~~~~~~~~ii~~ILaTDm~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ll~~llk~ADis 235 (326)
T d1y2ka1 168 ------------TKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGVLLLDNYSDRIQVLQNMVHCADLS 235 (326)
T ss_dssp ------------CHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHTCCBCTTCCBCCCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------CHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHhhccccccccccccChHHHHHHHHHHHHHHHcc
Confidence 67788889999999999999999999999999999988888888888999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHHHHhcchHHHhcCCCCCCCCCCCcchhhhhhhhHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Q psy7867 329 NPTKPLPLYRKWVDLLMEEFFQQGDKERELNLDISPMCDRLSATIEKSQVGFIDYIVHPLWETWADLVHPDAQEILDMLE 408 (484)
Q Consensus 329 n~~rp~~v~~kWs~~l~eEFf~QGD~Er~lgl~iSp~~DR~~~~~~ksQigFid~iv~PLf~~la~l~~p~~~~ll~~l~ 408 (484)
|++|||+++++|+.++++|||+|||+||++|+|++|+|||.+.++|++|+|||++||+|||++++++++|++++++++++
T Consensus 236 ~~~r~~~~~~~W~~~l~~Ef~~Qgd~E~~~gl~~sp~~dr~~~~~~~~Qi~Fi~~vv~Pl~~~l~~~~~p~~~~~l~~l~ 315 (326)
T d1y2ka1 236 NPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLE 315 (326)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCTTCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHTTTTTHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCccccchHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987899988888888
Q ss_pred HHHHHHHHhh
Q psy7867 409 ENRDWYQNYI 418 (484)
Q Consensus 409 ~Nr~~w~~~i 418 (484)
+|+++|++.+
T Consensus 316 ~N~~~W~~~~ 325 (326)
T d1y2ka1 316 DNREWYQSTI 325 (326)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhC
Confidence 8888888765
|
| >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1so2a_ a.211.1.2 (A:) cGMP-inhibited 3',5'-cyclic phosphodiesterase B, pde3b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3dtoa1 a.211.1.1 (A:2-213) Uncharacterized protein BH2835 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
| >d2pq7a1 a.211.1.1 (A:1-217) Predicted hydrolase mes0020 {Uncultured thermotogales bacterium [TaxId: 221214]} | Back information, alignment and structure |
|---|
| >d3djba1 a.211.1.1 (A:2-214) Uncharacterized protein BT9727_1981 {Bacillus thuringiensis [TaxId: 1428]} | Back information, alignment and structure |
|---|
| >d3b57a1 a.211.1.1 (A:1-201) Uncharacterized protein Lin1889 {Listeria innocua [TaxId: 1642]} | Back information, alignment and structure |
|---|
| >d1taza_ a.211.1.2 (A:) Catalytic domain of cyclic nucleotide phosphodiesterase 1b, PDE1B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d3dy8a1 a.211.1.2 (A:182-505) High-affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A, PDE9A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1tbfa_ a.211.1.2 (A:) cGMP-specific 3',5'-cyclic phosphodiesterase pde5a1-Ibmx {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]} | Back information, alignment and structure |
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| >d2o6ia1 a.211.1.1 (A:1-453) Hypothetical protein EF1143 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
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| >d2qgsa1 a.211.1.1 (A:1-216) Uncharacterized protein SE1688 {Staphylococcus epidermidis [TaxId: 1282]} | Back information, alignment and structure |
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| >d1y2ka1 a.211.1.2 (A:86-411) Catalytic domain of cyclic nucleotide phosphodiesterase pde4d {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2heka1 a.211.1.1 (A:1-369) Hypothetical protein aq_1910 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
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