Psyllid ID: psy7896

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------72
Protein Sequence
MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccEEEEEEcHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHccccccccccEEEcccccHHHHHHHHcHHHHcccccccccccHHHHHHHHHHHccccccccccccccccccccEEEcccccHHHHHHHHcccccccccccccccHHHHHcHHHHHHHcccccccEEEcccccEEEccccccccHHHHHHHHHHHHHHHccEEEEEEcccccccHHHHHHHccccEEEEEEccHHHHHHHcccccccccHHHHHccccEEEEcccHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHcccccEEEEEEcccHHHHHHHccccEEEEHHHHHHcccEEEEcccccccccHHHHHccccccEEEccccccccccHHHHHccccEEEEccccccccccEEEEcccccccccccccccccccccccccccccEEEccccccccccEEEEEcccccHHHHHHHHHHcccccccccEEEEEEEEcHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHccccEEccccccEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
EccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEcccccHHHHHHHHHcccEEccEEccEEEEccccHHHHHHHHHcHHHHHHccEEEEccHHHHHHHHHHHHccccccEEEEccccHHHEccEEEEcccHHHHHHHHHcHHHHHHccEEEEccHHHHHHHHHHHHccccccEEEEccccHHHHccHHHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHcccEEHHHHHHHHHcccccccccccHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHcccEEccHHHHcccccEEEEcccccccEcHHHHccccccEEEEEcccccccEcHHHHHHHccEEEEEEccEcccccEEEEEEccEEEEccccccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEcccccHHHHHHHHHcccEEEEEcccccEEEEEHHHccHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHcccEEEcccHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAevqwsscnifsTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQtlvfpdgkplnmilddggdltnlvhekYPQFLSEIRgiseetttGVHNLYKMFkenklgvpainvndsvtkplnmilddggdltnlvhekYPQFLSEIRgiseetttGVHNLYKMFkenklgvpainvndsvtkskfdnlyGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSrvivteidpinalqasmegyevttMEEAakeggifvtttgckdiirgehflqmRDDAIVcnighfdceiqvswldknavekvnvkpqvsptsrtkhlTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAevqwsscnifsTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVdrytlpngnhiILLAEGRLVnlgcamghpsfvmsnsFTNQVLAQIELWtkhsqypvgvymlpkKLDEEVAALHLEHLGVKLTKLTEDQAKylglpiegpykpdhyry
Flexible Loop (DISEMBL)
madiklaewgrktiimaeneMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKenklgvpainvndsvtkskfdnlYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVnvkpqvsptsrtkhltTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAkylglpiegpykpdhyry
Low Complexity Region (SEG)
MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHaaaaiaargvavyaWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHaaaaiaargvavyaWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY
Disordered region (IsUnstruct)
*****LAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVK*********KHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIE**********
Disordered Region (DISOPRED)
MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKP***RY
Disordered Region (DISEMBL)
MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY
Disordered Region (DISPRO)
MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPD*Y**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	718	2.2.26 [Sep-21-2011]
B3EDY3	471	Adenosylhomocysteinase OS	yes	N/A	0.394	0.600	0.593	5e-99
A4SF77	471	Adenosylhomocysteinase OS	yes	N/A	0.401	0.611	0.593	4e-96
Q3B532	471	Adenosylhomocysteinase OS	yes	N/A	0.394	0.600	0.593	7e-96
Q01VU1	475	Adenosylhomocysteinase OS	yes	N/A	0.395	0.597	0.592	2e-95
Q3AQC2	471	Adenosylhomocysteinase OS	yes	N/A	0.417	0.636	0.566	2e-95
B4SD43	471	Adenosylhomocysteinase OS	yes	N/A	0.399	0.609	0.590	3e-94
Q8KEG8	471	Adenosylhomocysteinase OS	yes	N/A	0.394	0.600	0.578	3e-94
Q82DC9	485	Adenosylhomocysteinase OS	yes	N/A	0.444	0.657	0.522	4e-94
B3QMF5	471	Adenosylhomocysteinase OS	yes	N/A	0.394	0.600	0.581	5e-94
Q9KZM1	485	Adenosylhomocysteinase OS	yes	N/A	0.447	0.661	0.528	5e-93

>sp|B3EDY3|SAHH_CHLL2 Adenosylhomocysteinase OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=ahcY PE=3 SV=1

 Score =  362 bits (930), Expect = 5e-99,   Method: Compositional matrix adjust.
 Identities = 190/320 (59%), Positives = 233/320 (72%), Gaps = 37/320 (11%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA RRKY  QK LKGARI G LHMT+QTAVLIETL+
Sbjct: 12  VADITLAEWGRKEIEIAEKEMPGLMATRRKYAGQKPLKGARITGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           +LGAEV+W+SCNIFSTQDHAAAAIAA G+ V+AWKGE+ +EY WC  Q L F DGK  N+
Sbjct: 72  DLGAEVRWASCNIFSTQDHAAAAIAAAGIPVFAWKGESLDEYWWCTRQILEFEDGKGPNL 131

Query: 121 ILDDGGDLTNLVH-----EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++H     E  P+ L ++ G +EE       LY+  +E       +   D
Sbjct: 132 IVDDGGDATLMIHLGYKIENNPELLEKVPGNAEEKA-----LYQQLRE-------VYSED 179

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
           +                    +++ +  +E++G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 180 T--------------------QRWHKVAAEMKGVSEETTTGVHRLYQMMEKGELLFPAIN 219

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKV VV GYGDVGKGCA S+R +G+RV
Sbjct: 220 VNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVLGYGDVGKGCAHSMRTYGARV 279

Query: 296 IVTEIDPINALQASMEGYEL 315
           IVTEIDPI ALQASMEG+E+
Sbjct: 280 IVTEIDPICALQASMEGFEV 299

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.
Chlorobium limicola (strain DSM 245 / NBRC 103803) (taxid: 290315)
EC: 3EC: .EC: 3EC: .EC: 1EC: .EC: 1

>sp|A4SF77|SAHH_PROVI Adenosylhomocysteinase OS=Prosthecochloris vibrioformis (strain DSM 265) GN=ahcY PE=3 SV=1

 Score =  353 bits (905), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 187/315 (59%), Positives = 228/315 (72%), Gaps = 27/315 (8%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA+R KY  QK L G+RI+G LHMT+QTAVLIETL+
Sbjct: 12  VADISLAEWGRKEIDIAEKEMPGLMAIRNKYKGQKPLAGSRISGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGA+V+W+SCNIFSTQDHAAAAIA  GV V+AWKGE+ EEY WC  Q L F +G   N+
Sbjct: 72  ELGADVRWASCNIFSTQDHAAAAIAVTGVPVFAWKGESLEEYWWCTRQILDFGNGLGPNL 131

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD T ++   Y                 V N   MF  +K G  A     ++   
Sbjct: 132 IVDDGGDATMMIILGYK----------------VENNPSMF--DKGGSNA--EEKALFAQ 171

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           L  I D+  D T     ++ +  ++++G+SEETTTGVH LY M ++ +L  PAINVNDSV
Sbjct: 172 LKSIYDE--DST-----RWHKVAADMKGVSEETTTGVHRLYHMMEKGELLFPAINVNDSV 224

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESL DG+KRATD+M+AGKVAVV GYGDVGKGCA S+R +G+RVIVTEI
Sbjct: 225 TKSKFDNLYGCRESLADGIKRATDVMIAGKVAVVLGYGDVGKGCAHSMRSYGARVIVTEI 284

Query: 301 DPINALQASMEGYEL 315
           DPI ALQA+MEG+E+
Sbjct: 285 DPICALQAAMEGFEV 299

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Prosthecochloris vibrioformis (strain DSM 265) (taxid: 290318)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q3B532|SAHH_PELLD Adenosylhomocysteinase OS=Pelodictyon luteolum (strain DSM 273) GN=ahcY PE=3 SV=1

 Score =  352 bits (902), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 190/320 (59%), Positives = 229/320 (71%), Gaps = 37/320 (11%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA+R+KY  QK LKGAR+AG LHMT+QTAVLIETL+
Sbjct: 12  VADISLAEWGRKEIDIAEKEMPGLMAIRKKYAGQKPLKGARVAGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           +LGA+V+W+SCNIFSTQDHAAAAIAA GV V+AWKGET E+Y WC  Q L F DG+  N+
Sbjct: 72  DLGADVRWASCNIFSTQDHAAAAIAATGVPVFAWKGETLEDYWWCTRQILDFGDGQGPNL 131

Query: 121 ILDDGGDLTNLVH-----EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++      E  P  L    G +EE       L+   K       AI   D
Sbjct: 132 IVDDGGDATLMIILGYKIENNPSMLQNAGGNAEERA-----LFGQLK-------AIYEED 179

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
           S                     ++ +   E++G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 180 S--------------------NRWHKVAKEMKGVSEETTTGVHRLYQMMEKGELLFPAIN 219

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKVAVV GYGDVGKGCA S+R +G+RV
Sbjct: 220 VNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVAVVLGYGDVGKGCAHSMRSYGARV 279

Query: 296 IVTEIDPINALQASMEGYEL 315
           IVTEIDPI ALQA+MEG+E+
Sbjct: 280 IVTEIDPICALQAAMEGFEV 299

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Pelodictyon luteolum (strain DSM 273) (taxid: 319225)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q01VU1|SAHH_SOLUE Adenosylhomocysteinase OS=Solibacter usitatus (strain Ellin6076) GN=ahcY PE=3 SV=1

 Score =  350 bits (899), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 189/319 (59%), Positives = 228/319 (71%), Gaps = 35/319 (10%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LAEWGRK I ++E EMPGLMA+RRKY  +K L G RI G LHMT+QTAVLIETL+
Sbjct: 15  VADLSLAEWGRKEISVSEFEMPGLMAIRRKYAKEKPLAGVRITGSLHMTIQTAVLIETLV 74

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           +LGA V+W+SCNIFSTQDHAAAAIA  GV V+AWKGE+ EEY WC  Q +  P GK   +
Sbjct: 75  DLGASVRWASCNIFSTQDHAAAAIAKAGVPVFAWKGESLEEYWWCTLQAVTHPGGKGPQL 134

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           ++DDGGD+T L+H+ Y     E+   S+   T                P+ +  + V K 
Sbjct: 135 VVDDGGDVTLLIHKGY-----ELENGSDWVNT----------------PSGSHEEKVIK- 172

Query: 181 LNMILDDGGDLTNLVHEKYPQ----FLSEIRGISEETTTGVHNLYKMFKENKLGVPAINV 236
                    DL   VH + PQ     ++E RG+SEETTTGVH LYKM ++ KL VPAINV
Sbjct: 173 ---------DLLKQVHAEDPQRWHKMVAEWRGVSEETTTGVHRLYKMQEQGKLLVPAINV 223

Query: 237 NDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
           NDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKVAV+ GYGDVGKG A SLR  G+RVI
Sbjct: 224 NDSVTKSKFDNLYGCRESLADGIKRATDVMVAGKVAVICGYGDVGKGSAHSLRGMGARVI 283

Query: 297 VTEIDPINALQASMEGYEL 315
           VTEIDPINALQA+MEG+E+
Sbjct: 284 VTEIDPINALQAAMEGFEV 302

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Solibacter usitatus (strain Ellin6076) (taxid: 234267)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q3AQC2|SAHH_CHLCH Adenosylhomocysteinase OS=Chlorobium chlorochromatii (strain CaD3) GN=ahcY PE=3 SV=1

 Score =  350 bits (899), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 191/337 (56%), Positives = 238/337 (70%), Gaps = 37/337 (10%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMALR+KY  QK LKGARIAG LHMT+QTAVLIETL+
Sbjct: 12  VADISLAEWGRKEIEIAEKEMPGLMALRKKYAGQKPLKGARIAGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           +LGA V+W+SCNIFSTQDHAAAAIA  GV V+AWKGET +EY WC  Q L F  G   N+
Sbjct: 72  DLGANVRWASCNIFSTQDHAAAAIAQAGVPVFAWKGETLDEYWWCTRQILEFDGGLGPNL 131

Query: 121 ILDDGGDLTNLV---H--EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++   H  E  P+ L +  G +EE       LY+  +E            
Sbjct: 132 IVDDGGDATLMIILGHKIENDPKMLDKTPGNAEEKA-----LYQQLRE------------ 174

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
                  +  +D        ++++ +  ++++G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 175 -------VFAED--------NQRWHKVAADMKGVSEETTTGVHRLYQMMEKGELLFPAIN 219

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKV VV GYGDVGKGCA S+R +G+RV
Sbjct: 220 VNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVTVVLGYGDVGKGCAHSMRSYGARV 279

Query: 296 IVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLT 332
           IVTEIDPI ALQA+MEG+E+     A+H  ++ V  T
Sbjct: 280 IVTEIDPICALQAAMEGFEVATMEDAVHEGNIFVTTT 316

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Chlorobium chlorochromatii (strain CaD3) (taxid: 340177)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|B4SD43|SAHH_PELPB Adenosylhomocysteinase OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=ahcY PE=3 SV=1

 Score =  346 bits (888), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 193/327 (59%), Positives = 231/327 (70%), Gaps = 40/327 (12%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LAEWGRK I +AE EMPGLMA RRKY  Q  LKGARIAG LHMT+QTAVLIETL+
Sbjct: 12  VADLSLAEWGRKEIDVAEKEMPGLMATRRKYAGQYPLKGARIAGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGAEV+W+SCNIFSTQDHAAAAIA  GV V+AWKGET EEY WC  Q L F  GK  N+
Sbjct: 72  ELGAEVRWASCNIFSTQDHAAAAIAKSGVPVFAWKGETLEEYWWCTRQILEFEGGKGPNL 131

Query: 121 ILDDGGDLTNLVH-----EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++      E  P+ L +     EE       LY+ F+E       +   D
Sbjct: 132 IVDDGGDATLMIILGYKIENNPELLEKAPANLEEKA-----LYQQFRE-------VFAED 179

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
           S                    +++ +  +E++G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 180 S--------------------QRWHKVAAEMKGVSEETTTGVHRLYQMMEKGELLFPAIN 219

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKV VV GYGDVGKG A+S+R +G+RV
Sbjct: 220 VNDSVTKSKFDNLYGCRESLADGIKRATDVMVAGKVVVVLGYGDVGKGSARSMRAYGARV 279

Query: 296 IVTEIDPINALQASMEGYE---LDEEV 319
           IVTEIDPI ALQA+MEGYE   +DE V
Sbjct: 280 IVTEIDPICALQAAMEGYEVSTMDEAV 306

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) (taxid: 324925)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8KEG8|SAHH_CHLTE Adenosylhomocysteinase OS=Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) GN=ahcY PE=3 SV=1

 Score =  346 bits (888), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 185/320 (57%), Positives = 227/320 (70%), Gaps = 37/320 (11%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA R+KY  +K L GARIAG LHMT+QTAVLIETL+
Sbjct: 12  VADISLAEWGRKEIEIAEKEMPGLMATRKKYEGKKPLAGARIAGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGA+V+W+SCNIFSTQDHAAAAIAA GV V+AWKGET +EY WC  Q L F  G   N+
Sbjct: 72  ELGADVRWASCNIFSTQDHAAAAIAAAGVPVFAWKGETLDEYWWCTRQILEFEGGLGPNL 131

Query: 121 ILDDGGDLTNLVHEKY-----PQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++H  Y     P  L +  G +EE    +  L  +F E+           
Sbjct: 132 IVDDGGDATLMIHFGYKIENDPSMLDKTPGNAEEKAL-LQQLKAVFAED----------- 179

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
                               ++++ +  + ++G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 180 --------------------NQRWHKVAAGMKGVSEETTTGVHRLYQMMEKGELLFPAIN 219

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKV VV GYGDVGKGCA S+R +G+RV
Sbjct: 220 VNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVLGYGDVGKGCAHSMRSYGARV 279

Query: 296 IVTEIDPINALQASMEGYEL 315
           IVTEIDPI ALQA+MEG+E+
Sbjct: 280 IVTEIDPICALQAAMEGFEV 299

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Chlorobium tepidum (strain ATCC 49652 / DSM 12025 / TLS) (taxid: 194439)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q82DC9|SAHH_STRAW Adenosylhomocysteinase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=ahcY PE=3 SV=1

 Score =  346 bits (887), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 195/373 (52%), Positives = 248/373 (66%), Gaps = 54/373 (14%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LAE+GRK I +AE+EMPGLM++R++Y   + L GAR+ G LHMTVQTAVLIETL+
Sbjct: 12  VADLSLAEFGRKEITLAEHEMPGLMSIRKEYAEAQPLAGARVTGSLHMTVQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIA---------ARGVAVYAWKGETDEEYVWCIEQTLV 111
            LGAEV+W+SCNIFSTQDHAAAAIA          +GV V+AWKGET EEY WC EQ L 
Sbjct: 72  ALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPDNPQGVPVFAWKGETLEEYWWCTEQALT 131

Query: 112 FPD---GKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGV 168
           +P+   G P NMILDDGGD T LVH          +G+  E            K+ K  V
Sbjct: 132 WPNTPTGGP-NMILDDGGDATLLVH----------KGVEYE------------KDGK--V 166

Query: 169 PAINVNDS-----VTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM 223
           P+++  +S     + + L+  + DG        +K+ Q  SEIRG++EETTTGVH LY+M
Sbjct: 167 PSVDTAESDEHRVILELLHRTITDGS-------QKWTQLASEIRGVTEETTTGVHRLYEM 219

Query: 224 FKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKG 283
            ++  L  PAINVND+VTKSKFDN YGCR SL+DG+ RATD+++ GK AVV GYGDVGKG
Sbjct: 220 HRDGTLLFPAINVNDAVTKSKFDNKYGCRHSLIDGINRATDVLIGGKTAVVCGYGDVGKG 279

Query: 284 CAQSLRLFGSRVIVTEIDPINALQASMEGYE---LDEEV--AALHLEHLGVKLTKLTEDQ 338
           CA+SLR  G+RVIVTEIDPI ALQA+M+GY+   LDE +  A + +   G K   +  D 
Sbjct: 280 CAESLRGQGARVIVTEIDPICALQAAMDGYQVTTLDEVIDKADIFVTTTGNKDIIMASDM 339

Query: 339 AKYLDIMLAGKVA 351
           AK     + G + 
Sbjct: 340 AKMKHQAIVGNIG 352

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Streptomyces avermitilis (taxid: 33903)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|B3QMF5|SAHH_CHLP8 Adenosylhomocysteinase OS=Chlorobaculum parvum (strain NCIB 8327) GN=ahcY PE=3 SV=1

 Score =  345 bits (886), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 186/320 (58%), Positives = 229/320 (71%), Gaps = 37/320 (11%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA R+KY  +K L GARIAG LHMT+QTAVLIETL+
Sbjct: 12  VADISLAEWGRKEIEIAEKEMPGLMATRKKYEGKKPLAGARIAGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGA+V+W+SCNIFSTQDHAAAAIAA GV V+AWKGET +EY WC  Q L F  G   N+
Sbjct: 72  ELGADVRWASCNIFSTQDHAAAAIAAAGVPVFAWKGETLDEYWWCTRQILEFEGGLGPNL 131

Query: 121 ILDDGGDLTNLVHEKY-----PQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++H  Y     P  L +  G +EE       L+   KE            
Sbjct: 132 IVDDGGDATLMIHLGYKIENDPSMLDKTPGNAEERA-----LFAQLKE------------ 174

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
                  +  +D        ++++ +  + ++G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 175 -------VFAED--------NQRWHKVAAGMKGVSEETTTGVHRLYQMMEKGELLFPAIN 219

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKVAVV GYGDVGKGCA S+R +G+RV
Sbjct: 220 VNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVAVVLGYGDVGKGCAHSMRSYGARV 279

Query: 296 IVTEIDPINALQASMEGYEL 315
           IVTEIDPI ALQA+MEG+++
Sbjct: 280 IVTEIDPICALQAAMEGFQV 299

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Chlorobaculum parvum (strain NCIB 8327) (taxid: 517417)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9KZM1|SAHH_STRCO Adenosylhomocysteinase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=ahcY PE=3 SV=1

 Score =  342 bits (878), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 196/371 (52%), Positives = 247/371 (66%), Gaps = 50/371 (13%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LA +GRK I +AE+EMPGLMA+R++Y   + L GAR+ G LHMTVQTAVLIETL+
Sbjct: 12  VADLSLAAFGRKEITLAEHEMPGLMAIRKEYAEAQPLAGARVTGSLHMTVQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIA---------ARGVAVYAWKGETDEEYVWCIEQTLV 111
            LGAEV+W+SCNIFSTQDHAAAAIA          +GV V+AWKGET EEY WC EQ L 
Sbjct: 72  ALGAEVRWASCNIFSTQDHAAAAIAVGPNGTPDNPQGVPVFAWKGETLEEYWWCTEQALT 131

Query: 112 FPD---GKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGV 168
           +P+   G P NMILDDGGD T LVH          +G+  E            K+ K  V
Sbjct: 132 WPNTPTGGP-NMILDDGGDATLLVH----------KGVEYE------------KDGK--V 166

Query: 169 PAINVNDSVTKPLNMILDDGGDLTNLVHE---KYPQFLSEIRGISEETTTGVHNLYKMFK 225
           P+++  +S    + + L     LT  V E   K+ Q  SEIRG++EETTTGVH LY+M +
Sbjct: 167 PSVDTAESDEHRVILEL-----LTRTVGESPQKWTQLASEIRGVTEETTTGVHRLYEMHR 221

Query: 226 ENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCA 285
           +  L  PAINVND+VTKSKFDN YGCR SL+DG+ RATD+++ GK AVV GYGDVGKGCA
Sbjct: 222 DGTLLFPAINVNDAVTKSKFDNKYGCRHSLIDGINRATDVLIGGKTAVVCGYGDVGKGCA 281

Query: 286 QSLRLFGSRVIVTEIDPINALQASMEGYE---LDEEV--AALHLEHLGVKLTKLTEDQAK 340
           +SLR  G+RVI+TEIDPI ALQA+M+G++   LDE V  A + +   G K   + +D AK
Sbjct: 282 ESLRGQGARVIITEIDPICALQAAMDGFQVTTLDEVVDKADIFVTTTGNKDIIMAKDMAK 341

Query: 341 YLDIMLAGKVA 351
                + G + 
Sbjct: 342 MKHQAIVGNIG 352

May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.

Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226)

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	718
410925318	432	PREDICTED: adenosylhomocysteinase A-like	0.350	0.583	0.660	1e-110
430812176	454	unnamed protein product [Pneumocystis ji	0.371	0.588	0.620	2e-99
189347135	471	S-adenosyl-L-homocysteine hydrolase [Chl	0.394	0.600	0.593	3e-97
375254871	472	adenosylhomocysteinase [Tannerella forsy	0.395	0.601	0.601	3e-96
410097121	472	adenosylhomocysteinase [Parabacteroides	0.401	0.610	0.606	1e-95
390947668	469	adenosylhomocysteinase [Alistipes finego	0.410	0.628	0.574	6e-95
334366509	469	adenosylhomocysteinase [Alistipes sp. HG	0.410	0.628	0.574	9e-95
194333640	472	S-adenosyl-L-homocysteine hydrolase [Pro	0.394	0.599	0.606	1e-94
145219929	471	S-adenosyl-L-homocysteine hydrolase [Chl	0.401	0.611	0.593	3e-94
154490354	472	hypothetical protein PARMER_00587 [Parab	0.401	0.610	0.6	3e-94

>gi|410925318|ref|XP_003976128.1| PREDICTED: adenosylhomocysteinase A-like [Takifugu rubripes]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 208/315 (66%), Positives = 232/315 (73%), Gaps = 63/315 (20%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AENEMPGLM +R KYG  K LKGARIAGCLHMT+QTAVLIETL 
Sbjct: 9   VADISLAEWGRKAIDIAENEMPGLMKMREKYGQSKPLKGARIAGCLHMTLQTAVLIETLT 68

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEVQWSSCNIFSTQDHAAAA+A  G+ VYAWKGETDEEYVWCI              
Sbjct: 69  ALGAEVQWSSCNIFSTQDHAAAAVAKSGIPVYAWKGETDEEYVWCI-------------- 114

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
                                      E+T      LY  FK+N+              P
Sbjct: 115 ---------------------------EQT------LY--FKDNQ--------------P 125

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           LNMILDDGGDLTN+VH+KYP+ LS IRG+SEETTTGVHNLYKM K+ +L VPAINVNDSV
Sbjct: 126 LNMILDDGGDLTNMVHQKYPKLLSGIRGLSEETTTGVHNLYKMLKKGELKVPAINVNDSV 185

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESL+DG+KRATD+M+AGKVAVVAGYGDVGKGC Q+LR FG+RVIVTE+
Sbjct: 186 TKSKFDNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCVQALRGFGARVIVTEV 245

Query: 301 DPINALQASMEGYEL 315
           DPINALQA+MEGYE+
Sbjct: 246 DPINALQAAMEGYEV 260

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|430812176|emb|CCJ30398.1| unnamed protein product [Pneumocystis jirovecii]

 Score =  370 bits (950), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 196/316 (62%), Positives = 229/316 (72%), Gaps = 49/316 (15%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA+WGRK I +AENEMPGL++ R KYGA K LKGARIAGCLHMT+QTAVLIETL+
Sbjct: 8   VADISLADWGRKEIELAENEMPGLLSCRMKYGASKPLKGARIAGCLHMTIQTAVLIETLV 67

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLV-FPDGKPLN 119
           ELGAEV WSSCNIFSTQDHAAAAIAA G++V+AWKGET+EEY+WC+E+ L  F DGK LN
Sbjct: 68  ELGAEVTWSSCNIFSTQDHAAAAIAASGISVFAWKGETEEEYLWCMERQLTSFKDGKHLN 127

Query: 120 MILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           MILDDGGDLTNL+H KYP +L E +GISEETTTGVH LY+MFKE KL VPAINVNDSVTK
Sbjct: 128 MILDDGGDLTNLIHSKYPDYLKECKGISEETTTGVHQLYRMFKEGKLKVPAINVNDSVTK 187

Query: 180 PLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDS 239
                             K+  ++                 Y  F  N +          
Sbjct: 188 -----------------SKFDNYMG----------------YAFFFCNIV---------- 204

Query: 240 VTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE 299
                F     CRESL+DG+KRATDIM+AGK+A+VAG+GDVGKGCA++LR  G+RVIVTE
Sbjct: 205 -----FTLKCRCRESLIDGIKRATDIMIAGKIALVAGFGDVGKGCAKALRGMGARVIVTE 259

Query: 300 IDPINALQASMEGYEL 315
           IDPI ALQA MEGY++
Sbjct: 260 IDPITALQACMEGYQV 275

Source: Pneumocystis jirovecii

Species: Pneumocystis jirovecii

Genus: Pneumocystis

Family: Pneumocystidaceae

Order: Pneumocystidales

Class: Pneumocystidomycetes

Phylum: Ascomycota

Superkingdom: Eukaryota

>gi|189347135|ref|YP_001943664.1| S-adenosyl-L-homocysteine hydrolase [Chlorobium limicola DSM 245] gi|226695327|sp|B3EDY3.1|SAHH_CHLL2 RecName: Full=Adenosylhomocysteinase; AltName: Full=S-adenosyl-L-homocysteine hydrolase; Short=AdoHcyase gi|189341282|gb|ACD90685.1| adenosylhomocysteinase [Chlorobium limicola DSM 245]

 Score =  362 bits (930), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 190/320 (59%), Positives = 233/320 (72%), Gaps = 37/320 (11%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA RRKY  QK LKGARI G LHMT+QTAVLIETL+
Sbjct: 12  VADITLAEWGRKEIEIAEKEMPGLMATRRKYAGQKPLKGARITGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           +LGAEV+W+SCNIFSTQDHAAAAIAA G+ V+AWKGE+ +EY WC  Q L F DGK  N+
Sbjct: 72  DLGAEVRWASCNIFSTQDHAAAAIAAAGIPVFAWKGESLDEYWWCTRQILEFEDGKGPNL 131

Query: 121 ILDDGGDLTNLVH-----EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++H     E  P+ L ++ G +EE       LY+  +E       +   D
Sbjct: 132 IVDDGGDATLMIHLGYKIENNPELLEKVPGNAEEKA-----LYQQLRE-------VYSED 179

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
           +                    +++ +  +E++G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 180 T--------------------QRWHKVAAEMKGVSEETTTGVHRLYQMMEKGELLFPAIN 219

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKV VV GYGDVGKGCA S+R +G+RV
Sbjct: 220 VNDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVLGYGDVGKGCAHSMRTYGARV 279

Query: 296 IVTEIDPINALQASMEGYEL 315
           IVTEIDPI ALQASMEG+E+
Sbjct: 280 IVTEIDPICALQASMEGFEV 299

Source: Chlorobium limicola DSM 245

Species: Chlorobium limicola

Genus: Chlorobium

Family: Chlorobiaceae

Order: Chlorobiales

Class: Chlorobia

Phylum: Chlorobi

Superkingdom: Bacteria

>gi|375254871|ref|YP_005014038.1| adenosylhomocysteinase [Tannerella forsythia ATCC 43037] gi|363407006|gb|AEW20692.1| adenosylhomocysteinase [Tannerella forsythia ATCC 43037]

 Score =  359 bits (921), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 192/319 (60%), Positives = 232/319 (72%), Gaps = 35/319 (10%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA++GRK I +AE+EMPGLMALR+KY  +K L+GARI G LHMT+QTAVLIETL+
Sbjct: 13  VADITLADFGRKEIEIAEHEMPGLMALRKKYADKKPLQGARITGSLHMTIQTAVLIETLV 72

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           +LGA+V+W+SCNIFSTQDHAAAAIA  GV V+AWKGET EEY WC +Q L FPDGK  N+
Sbjct: 73  DLGADVRWASCNIFSTQDHAAAAIAKAGVPVFAWKGETLEEYWWCTDQALRFPDGKGPNL 132

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD + L H+ Y                          EN    P I    +    
Sbjct: 133 IVDDGGDASLLFHQGYA------------------------AEND---PRILKRKAANHE 165

Query: 181 LNMILDDGGDLTNLVHEKYPQ----FLSEIRGISEETTTGVHNLYKMFKENKLGVPAINV 236
             +IL+    L   +H++ PQ     L E++G+SEETTTGVH LY+M +  +L VPAINV
Sbjct: 166 EQVILN----LLESIHKENPQRWHNMLKEMKGVSEETTTGVHRLYQMMERGELLVPAINV 221

Query: 237 NDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
           NDSVTKSKFDNLYGCRESL DG+KRATD+M+AGKV VVAGYGDVGKGCA S+R +G+RVI
Sbjct: 222 NDSVTKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVAGYGDVGKGCAHSMRSYGARVI 281

Query: 297 VTEIDPINALQASMEGYEL 315
           VTEIDPI ALQASMEG+E+
Sbjct: 282 VTEIDPICALQASMEGFEV 300

Source: Tannerella forsythia ATCC 43037

Species: Tannerella forsythia

Genus: Tannerella

Family: Porphyromonadaceae

Order: Bacteroidales

Class: Bacteroidia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|410097121|ref|ZP_11292105.1| adenosylhomocysteinase [Parabacteroides goldsteinii CL02T12C30] gi|409224915|gb|EKN17839.1| adenosylhomocysteinase [Parabacteroides goldsteinii CL02T12C30]

 Score =  357 bits (917), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/315 (60%), Positives = 238/315 (75%), Gaps = 27/315 (8%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LAE+GRK I +AE+EMPGLMALR+KY AQK LKGARI G LHMT+QTAVLIETL+
Sbjct: 13  VADMSLAEFGRKEIEIAEHEMPGLMALRQKYAAQKPLKGARITGSLHMTIQTAVLIETLV 72

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGA+V+W+SCNIFSTQDHAAAAIAA GV V+AWKGET EEY WC +  L FPDGK   M
Sbjct: 73  ALGADVRWASCNIFSTQDHAAAAIAATGVPVFAWKGETLEEYWWCTDMALRFPDGKGPQM 132

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD + LVH  Y       R  ++  T            N+ G  + +    +   
Sbjct: 133 IVDDGGDASLLVHMGY-------RAENDAETI-----------NRKG--SNHEEQVILDT 172

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           LN IL +        ++++ + ++E++G+SEETTTGVH LY+M ++++L VPAINVNDSV
Sbjct: 173 LNSILKED-------NQRWHRTIAEMKGVSEETTTGVHRLYQMMEKDELLVPAINVNDSV 225

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESL DG+KRATD+M+AGKV VVAGYGDVGKGCA S+R +G+RV+VTEI
Sbjct: 226 TKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVAGYGDVGKGCAHSMRSYGARVLVTEI 285

Query: 301 DPINALQASMEGYEL 315
           DPI ALQA+MEG+E+
Sbjct: 286 DPICALQAAMEGFEV 300

Source: Parabacteroides goldsteinii CL02T12C30

Species: Parabacteroides goldsteinii

Genus: Parabacteroides

Family: Porphyromonadaceae

Order: Bacteroidales

Class: Bacteroidia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|390947668|ref|YP_006411428.1| adenosylhomocysteinase [Alistipes finegoldii DSM 17242] gi|390424237|gb|AFL78743.1| adenosylhomocysteinase [Alistipes finegoldii DSM 17242]

 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 185/322 (57%), Positives = 225/322 (69%), Gaps = 27/322 (8%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LA WGRK I +AE+EMPGLMA+RRKYG QK LKG R+ G LHMT+QTAVLIETL+
Sbjct: 11  VADMSLAGWGRKEIEIAEHEMPGLMAVRRKYGPQKPLKGVRVMGSLHMTIQTAVLIETLV 70

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGA+V+W SCNIFSTQDHAAAAIA  GV V+AWKGET  EY WC    L FP GK   +
Sbjct: 71  ELGADVRWCSCNIFSTQDHAAAAIAETGVPVFAWKGETLPEYWWCTAMALSFPGGKGPQL 130

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD T L+H          +G   E      +            P+    + +   
Sbjct: 131 IVDDGGDATLLIH----------KGFKAEDDASTLDYE----------PSSYEEEVIIDT 170

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           L  +L +  D       K+ + ++E +G+SEETTTGVH LY+M +  +L VPAINVNDS 
Sbjct: 171 LKKVLAEDKD-------KWHRTVAEWKGVSEETTTGVHRLYQMQEAGELLVPAINVNDSC 223

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESL DG+KRATD+M+AGKV VV GYGDVGKGCA S+R +G+RVIVTEI
Sbjct: 224 TKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVCGYGDVGKGCAASMRSYGARVIVTEI 283

Query: 301 DPINALQASMEGYELDEEVAAL 322
           DPI ALQA+MEG+E+    +AL
Sbjct: 284 DPICALQAAMEGFEVKTVESAL 305

Source: Alistipes finegoldii DSM 17242

Species: Alistipes finegoldii

Genus: Alistipes

Family: Rikenellaceae

Order: Bacteroidales

Class: Bacteroidia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|334366509|ref|ZP_08515439.1| adenosylhomocysteinase [Alistipes sp. HGB5] gi|313157319|gb|EFR56744.1| adenosylhomocysteinase [Alistipes sp. HGB5]

 Score =  354 bits (909), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 185/322 (57%), Positives = 225/322 (69%), Gaps = 27/322 (8%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LA WGRK I +AE+EMPGLMA+RRKYG QK LKG R+ G LHMT+QTAVLIETL+
Sbjct: 11  VADMSLAGWGRKEIEIAEHEMPGLMAVRRKYGPQKPLKGVRVMGSLHMTIQTAVLIETLV 70

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGA+V+W SCNIFSTQDHAAAAIA  GV V+AWKGET  EY WC    L FP GK   +
Sbjct: 71  ELGADVRWCSCNIFSTQDHAAAAIAETGVPVFAWKGETLPEYWWCTVMALSFPGGKGPQL 130

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD T L+H          +G   E      +            P+    + +   
Sbjct: 131 IVDDGGDATLLIH----------KGFKAEDDASTLDYE----------PSSYEEEVIIDT 170

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           L  +L +  D       K+ + ++E +G+SEETTTGVH LY+M +  +L VPAINVNDS 
Sbjct: 171 LKKVLAEDKD-------KWHRTVAEWKGVSEETTTGVHRLYQMQEAGELLVPAINVNDSC 223

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESL DG+KRATD+M+AGKV VV GYGDVGKGCA S+R +G+RVIVTEI
Sbjct: 224 TKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVCGYGDVGKGCAASMRSYGARVIVTEI 283

Query: 301 DPINALQASMEGYELDEEVAAL 322
           DPI ALQA+MEG+E+    +AL
Sbjct: 284 DPICALQAAMEGFEVKTVESAL 305

Source: Alistipes sp. HGB5

Species: Alistipes sp. HGB5

Genus: Alistipes

Family: Rikenellaceae

Order: Bacteroidales

Class: Bacteroidia

Phylum: Bacteroidetes

Superkingdom: Bacteria

>gi|194333640|ref|YP_002015500.1| S-adenosyl-L-homocysteine hydrolase [Prosthecochloris aestuarii DSM 271] gi|194311458|gb|ACF45853.1| adenosylhomocysteinase [Prosthecochloris aestuarii DSM 271]

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 194/320 (60%), Positives = 226/320 (70%), Gaps = 37/320 (11%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA R KY  Q+ LKGARI G LHMT+QTAVLIETL+
Sbjct: 13  VADISLAEWGRKEIEIAEKEMPGLMATRAKYEGQQPLKGARITGSLHMTIQTAVLIETLV 72

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGAEV+W+SCNIFSTQDHAAAAIAA GV V+AWKGET EEY WC  Q L F  GK  NM
Sbjct: 73  ELGAEVRWASCNIFSTQDHAAAAIAAAGVPVFAWKGETLEEYWWCTRQALAFDGGKGPNM 132

Query: 121 ILDDGGDLTNLVH-----EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 175
           I+DDGGD T ++      E  P  L    G +EE       LY   KE       +  +D
Sbjct: 133 IVDDGGDATLMIILGYKIENNPALLDVTPGNAEEKA-----LYGQLKE-------VFESD 180

Query: 176 SVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN 235
                               ++ + +  +EI+G+SEETTTGVH LY+M ++ +L  PAIN
Sbjct: 181 --------------------NQHWHKVAAEIKGVSEETTTGVHRLYQMMEKGELLFPAIN 220

Query: 236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV 295
           VNDSVTKSKFDNLYGCRESL DG+KRATD+MLAGK+ VV GYGDVGKGCA S+R +GSRV
Sbjct: 221 VNDSVTKSKFDNLYGCRESLADGIKRATDVMLAGKIVVVLGYGDVGKGCAHSMRTYGSRV 280

Query: 296 IVTEIDPINALQASMEGYEL 315
           IVTEIDPI ALQASMEG+E+
Sbjct: 281 IVTEIDPICALQASMEGFEV 300

Source: Prosthecochloris aestuarii DSM 271

Species: Prosthecochloris aestuarii

Genus: Prosthecochloris

Family: Chlorobiaceae

Order: Chlorobiales

Class: Chlorobia

Phylum: Chlorobi

Superkingdom: Bacteria

>gi|145219929|ref|YP_001130638.1| S-adenosyl-L-homocysteine hydrolase [Chlorobium phaeovibrioides DSM 265] gi|189046122|sp|A4SF77.1|SAHH_PROVI RecName: Full=Adenosylhomocysteinase; AltName: Full=S-adenosyl-L-homocysteine hydrolase; Short=AdoHcyase gi|145206093|gb|ABP37136.1| adenosylhomocysteinase [Chlorobium phaeovibrioides DSM 265]

 Score =  353 bits (905), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 187/315 (59%), Positives = 228/315 (72%), Gaps = 27/315 (8%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LAEWGRK I +AE EMPGLMA+R KY  QK L G+RI+G LHMT+QTAVLIETL+
Sbjct: 12  VADISLAEWGRKEIDIAEKEMPGLMAIRNKYKGQKPLAGSRISGSLHMTIQTAVLIETLV 71

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           ELGA+V+W+SCNIFSTQDHAAAAIA  GV V+AWKGE+ EEY WC  Q L F +G   N+
Sbjct: 72  ELGADVRWASCNIFSTQDHAAAAIAVTGVPVFAWKGESLEEYWWCTRQILDFGNGLGPNL 131

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD T ++   Y                 V N   MF  +K G  A     ++   
Sbjct: 132 IVDDGGDATMMIILGYK----------------VENNPSMF--DKGGSNA--EEKALFAQ 171

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           L  I D+  D T     ++ +  ++++G+SEETTTGVH LY M ++ +L  PAINVNDSV
Sbjct: 172 LKSIYDE--DST-----RWHKVAADMKGVSEETTTGVHRLYHMMEKGELLFPAINVNDSV 224

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESL DG+KRATD+M+AGKVAVV GYGDVGKGCA S+R +G+RVIVTEI
Sbjct: 225 TKSKFDNLYGCRESLADGIKRATDVMIAGKVAVVLGYGDVGKGCAHSMRSYGARVIVTEI 284

Query: 301 DPINALQASMEGYEL 315
           DPI ALQA+MEG+E+
Sbjct: 285 DPICALQAAMEGFEV 299

Source: Chlorobium phaeovibrioides DSM 265

Species: Chlorobium phaeovibrioides

Genus: Chlorobium

Family: Chlorobiaceae

Order: Chlorobiales

Class: Chlorobia

Phylum: Chlorobi

Superkingdom: Bacteria

>gi|154490354|ref|ZP_02030615.1| hypothetical protein PARMER_00587 [Parabacteroides merdae ATCC 43184] gi|154088965|gb|EDN88009.1| adenosylhomocysteinase [Parabacteroides merdae ATCC 43184]

 Score =  352 bits (904), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 189/315 (60%), Positives = 235/315 (74%), Gaps = 27/315 (8%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LAE+GRK I +AE+EMPGLMALR+KY  QK LKGARI G LHMT+QTAVLIETL+
Sbjct: 13  VADMSLAEFGRKEIEIAEHEMPGLMALRKKYADQKPLKGARITGSLHMTIQTAVLIETLV 72

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGA+V+W+SCNIFSTQDHAAAAIAA GV V+AWKGET EEY WC +  L FPDGK  +M
Sbjct: 73  ALGADVRWASCNIFSTQDHAAAAIAADGVPVFAWKGETLEEYWWCTDMALRFPDGKGPHM 132

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD + LVH  Y       R  ++  T            N+ G    +    +   
Sbjct: 133 IVDDGGDASLLVHMGY-------RAENDAETI-----------NRKG--GNHEEQVILDT 172

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           LN IL +        + ++ + ++E++G+SEETTTGVH LY+M ++ +L VPAINVNDSV
Sbjct: 173 LNRILAED-------NTRWHRTIAEMKGVSEETTTGVHRLYQMMEKGELLVPAINVNDSV 225

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESL DG+KRATD+M+AGKV VVAGYGDVGKGCA S+R +G+RV++TEI
Sbjct: 226 TKSKFDNLYGCRESLADGIKRATDVMIAGKVVVVAGYGDVGKGCAHSMRSYGARVLITEI 285

Query: 301 DPINALQASMEGYEL 315
           DPI ALQA+MEG+E+
Sbjct: 286 DPICALQAAMEGFEV 300

Source: Parabacteroides merdae ATCC 43184

Species: Parabacteroides merdae

Genus: Parabacteroides

Family: Porphyromonadaceae

Order: Bacteroidales

Class: Bacteroidia

Phylum: Bacteroidetes

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	718
FB|FBgn0014455	432	Ahcy13 "Adenosylhomocysteinase	0.249	0.414	0.793	1.9e-171
ZFIN|ZDB-GENE-031219-6	433	ahcy "S-adenosylhomocysteine h	0.249	0.413	0.754	4e-171
UNIPROTKB|F1P3F1	438	AHCY "Adenosylhomocysteinase"	0.249	0.408	0.765	3.2e-169
RGD|69260	432	Ahcy "adenosylhomocysteinase"	0.247	0.412	0.737	5.9e-166
UNIPROTKB|Q3MHL4	432	AHCY "Adenosylhomocysteinase"	0.247	0.412	0.743	7.5e-166
UNIPROTKB|P23526	432	AHCY "Adenosylhomocysteinase"	0.247	0.412	0.743	4.1e-165
UNIPROTKB|Q710C4	432	AHCY "Adenosylhomocysteinase"	0.247	0.412	0.743	4.1e-165
UNIPROTKB|F1S4Y7	423	AHCY "Adenosylhomocysteinase"	0.246	0.418	0.747	5.2e-165
WB|WBGene00019322	437	ahcy-1 [Caenorhabditis elegans	0.249	0.409	0.754	4.6e-164
DICTYBASE|DDB_G0267418	431	sahA "adenosylhomocysteinase"	0.246	0.410	0.774	1.1e-162

FB|FBgn0014455 Ahcy13 "Adenosylhomocysteinase at 13" [Drosophila melanogaster (taxid:7227)]

 Score = 765 (274.4 bits), Expect = 1.9e-171, Sum P(3) = 1.9e-171
 Identities = 142/179 (79%), Positives = 155/179 (86%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADI LAEWGRK II+AENEMPGLMA R+KYG  K LKGARI GCLHMTVQTAVLIETL+
Sbjct:     8 VADISLAEWGRKAIIIAENEMPGLMACRKKYGPSKPLKGARITGCLHMTVQTAVLIETLV 67

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
             ELGA+VQWSSCNIFSTQD+              WKGETDEEY+WCIEQTLVFPDG+PLNM
Sbjct:    68 ELGAQVQWSSCNIFSTQDNAAAAIAATGVPVYAWKGETDEEYMWCIEQTLVFPDGQPLNM 127

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNLVHEK+PQ+L  I+G+SEETTTGVHNLYKMFKE +LGVPAINVNDSVTK
Sbjct:   128 ILDDGGDLTNLVHEKFPQYLKNIKGLSEETTTGVHNLYKMFKEGRLGVPAINVNDSVTK 186

GO:0004013 "adenosylhomocysteinase activity" evidence=ISS;NAS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

ZFIN|ZDB-GENE-031219-6 ahcy "S-adenosylhomocysteine hydrolase" [Danio rerio (taxid:7955)]

 Score = 712 (255.7 bits), Expect = 4.0e-171, Sum P(3) = 4.0e-171
 Identities = 135/179 (75%), Positives = 146/179 (81%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADI LAEWGRK I +AENEMPGLM +R  YG  K LKGARIAGCLHMT+QTAVLIETL 
Sbjct:     9 VADISLAEWGRKAIEIAENEMPGLMKMRELYGQSKPLKGARIAGCLHMTLQTAVLIETLT 68

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
              LGAEVQWSSCNIFSTQDH              WKGETDEEYVWCIEQT+ F DG+PLNM
Sbjct:    69 ALGAEVQWSSCNIFSTQDHAAAAIAKTGVPVYAWKGETDEEYVWCIEQTIYFKDGQPLNM 128

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNLVH+KYP+ L+ I+GISEETTTGVHNLYKM K  +L VPAINVNDSVTK
Sbjct:   129 ILDDGGDLTNLVHQKYPKLLAGIKGISEETTTGVHNLYKMLKSGELKVPAINVNDSVTK 187

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0033353 "S-adenosylmethionine cycle" evidence=IMP

UNIPROTKB|F1P3F1 AHCY "Adenosylhomocysteinase" [Gallus gallus (taxid:9031)]

 Score = 714 (256.4 bits), Expect = 3.2e-169, Sum P(3) = 3.2e-169
 Identities = 137/179 (76%), Positives = 145/179 (81%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADI LA+WGRK I +AENEMPGLM +R  YGA K LKGARIAGCLHMTVQTAVLIETL+
Sbjct:    14 VADISLADWGRKAIEIAENEMPGLMKMREMYGASKPLKGARIAGCLHMTVQTAVLIETLI 73

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
             +LGAEVQWSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG+PLNM
Sbjct:    74 KLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLYFKDGQPLNM 133

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNLVH KYPQ L  IRGISEETTTGVHNLYKM     L VPAINVNDSVTK
Sbjct:   134 ILDDGGDLTNLVHTKYPQLLKGIRGISEETTTGVHNLYKMKANGTLKVPAINVNDSVTK 192

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

RGD|69260 Ahcy "adenosylhomocysteinase" [Rattus norvegicus (taxid:10116)]

 Score = 678 (243.7 bits), Expect = 5.9e-166, Sum P(3) = 5.9e-166
 Identities = 132/179 (73%), Positives = 142/179 (79%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADI LA WGRK + +AENEMPGLM +R  Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct:     9 VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 68

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
              LGAEV+WSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct:    69 ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNM 127

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNL+H K+PQ LS IRGISEETTTGVHNLYKM     L VPAINVNDSVTK
Sbjct:   128 ILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK 186

GO:0001666 "response to hypoxia" evidence=IEP

GO:0002439 "chronic inflammatory response to antigenic stimulus" evidence=IMP

GO:0004013 "adenosylhomocysteinase activity" evidence=ISO;IDA

GO:0005507 "copper ion binding" evidence=ISO

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=ISO;IDA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0007584 "response to nutrient" evidence=IDA

GO:0019510 "S-adenosylhomocysteine catabolic process" evidence=ISO;IDA

GO:0030554 "adenyl nucleotide binding" evidence=IDA

GO:0042470 "melanosome" evidence=IEA

GO:0042745 "circadian sleep/wake cycle" evidence=IDA

GO:0042802 "identical protein binding" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0043621 "protein self-association" evidence=ISO

GO:0051287 "NAD binding" evidence=IDA

UNIPROTKB|Q3MHL4 AHCY "Adenosylhomocysteinase" [Bos taurus (taxid:9913)]

 Score = 688 (247.2 bits), Expect = 7.5e-166, Sum P(3) = 7.5e-166
 Identities = 133/179 (74%), Positives = 143/179 (79%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADI LA WGRK + +AENEMPGLM +R  Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct:     9 VADISLAAWGRKALDLAENEMPGLMHMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 68

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
              LGAEV+WSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct:    69 ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNM 127

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNL+H KYPQ LS IRGISEETTTGVHNLYKM  +  L VPAINVNDSVTK
Sbjct:   128 ILDDGGDLTNLIHTKYPQLLSGIRGISEETTTGVHNLYKMMAKGILKVPAINVNDSVTK 186

GO:0004013 "adenosylhomocysteinase activity" evidence=ISS

GO:0043621 "protein self-association" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0005507 "copper ion binding" evidence=ISS

GO:0019510 "S-adenosylhomocysteine catabolic process" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P23526 AHCY "Adenosylhomocysteinase" [Homo sapiens (taxid:9606)]

 Score = 687 (246.9 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
 Identities = 133/179 (74%), Positives = 142/179 (79%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct:     9 VADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLV 68

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
              LGAEVQWSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct:    69 TLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNM 127

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNL+H KYPQ L  IRGISEETTTGVHNLYKM     L VPAINVNDSVTK
Sbjct:   128 ILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK 186

GO:0000166 "nucleotide binding" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0004013 "adenosylhomocysteinase activity" evidence=TAS

GO:0000096 "sulfur amino acid metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0032259 "methylation" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q710C4 AHCY "Adenosylhomocysteinase" [Sus scrofa (taxid:9823)]

 Score = 683 (245.5 bits), Expect = 4.1e-165, Sum P(3) = 4.1e-165
 Identities = 133/179 (74%), Positives = 142/179 (79%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADI LA WGRK + +AENEMPGLM +R  Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct:     9 VADISLAAWGRKALDLAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 68

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
              LGAEV+WSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct:    69 ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNM 127

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNLVH KYP+ LS IRGISEETTTGVHNLYKM     L VPAINVNDSVTK
Sbjct:   128 ILDDGGDLTNLVHTKYPELLSGIRGISEETTTGVHNLYKMKANGILKVPAINVNDSVTK 186

GO:0043621 "protein self-association" evidence=ISS

GO:0005507 "copper ion binding" evidence=ISS

GO:0019510 "S-adenosylhomocysteine catabolic process" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0004013 "adenosylhomocysteinase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1S4Y7 AHCY "Adenosylhomocysteinase" [Sus scrofa (taxid:9823)]

 Score = 682 (245.1 bits), Expect = 5.2e-165, Sum P(3) = 5.2e-165
 Identities = 133/178 (74%), Positives = 141/178 (79%)

Query:     2 ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
             ADI LA WGRK + +AENEMPGLM +R  Y A K LKGARIAGCLHMTV+TAVLIETL+ 
Sbjct:     1 ADISLAAWGRKALDLAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLVA 60

Query:    62 LGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
             LGAEV+WSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNMI
Sbjct:    61 LGAEVRWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNMI 119

Query:   122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             LDDGGDLTNLVH KYP+ LS IRGISEETTTGVHNLYKM     L VPAINVNDSVTK
Sbjct:   120 LDDGGDLTNLVHTKYPELLSGIRGISEETTTGVHNLYKMKANGILKVPAINVNDSVTK 177

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

WB|WBGene00019322 ahcy-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 708 (254.3 bits), Expect = 4.6e-164, Sum P(3) = 4.6e-164
 Identities = 135/179 (75%), Positives = 148/179 (82%)

Query:     1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
             +ADIKLA++GRK II+AENEMPGLMA+R KYG  + LKGARIAGCLHMT+QTAVLIETL 
Sbjct:    10 VADIKLADFGRKEIILAENEMPGLMAMRSKYGPSQPLKGARIAGCLHMTIQTAVLIETLT 69

Query:    61 ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
              LGAEVQWSSCNIFSTQDH              WKGETDEEY WCIEQT+VF DG+PLNM
Sbjct:    70 ALGAEVQWSSCNIFSTQDHAAAAIAQTGVPVYAWKGETDEEYEWCIEQTIVFKDGQPLNM 129

Query:   121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             ILDDGGDLTNLVH KYPQ+L+ IRG+SEETTTGVHNL KM  +  L VPAINVNDSVTK
Sbjct:   130 ILDDGGDLTNLVHAKYPQYLAGIRGLSEETTTGVHNLAKMLAKGDLKVPAINVNDSVTK 188

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0004455 "ketol-acid reductoisomerase activity" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0032940 "secretion by cell" evidence=IMP

DICTYBASE|DDB_G0267418 sahA "adenosylhomocysteinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 727 (261.0 bits), Expect = 1.1e-162, Sum P(3) = 1.1e-162
 Identities = 137/177 (77%), Positives = 148/177 (83%)

Query:     3 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
             DI LA WGRK I +AENEMPGLM LR+KYG  +ILKGARIAGCLHMT+QTAVLIETL  L
Sbjct:    10 DISLAAWGRKEIEIAENEMPGLMTLRKKYGPAQILKGARIAGCLHMTIQTAVLIETLTAL 69

Query:    63 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
             GA+VQWSSCNIFSTQD               WKGET+EEY WC+EQT+VF DG+PLNMIL
Sbjct:    70 GAQVQWSSCNIFSTQDQAAAAIAATGVPVYAWKGETEEEYNWCVEQTIVFQDGQPLNMIL 129

Query:   123 DDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
             DDGGDLTNLVHEKYPQFL+ I+GISEETTTGVHNLYKMFKE KL VPAINVNDSVTK
Sbjct:   130 DDGGDLTNLVHEKYPQFLAGIKGISEETTTGVHNLYKMFKEGKLKVPAINVNDSVTK 186

GO:0005615 "extracellular space" evidence=IDA

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0031941 "filamentous actin" evidence=IDA

GO:0031252 "cell leading edge" evidence=IDA

GO:0007163 "establishment or maintenance of cell polarity" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0005938 "cell cortex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031002 "actin rod" evidence=IDA

GO:0030552 "cAMP binding" evidence=TAS

GO:0004013 "adenosylhomocysteinase activity" evidence=IEA;ISS;TAS

GO:0006730 "one-carbon metabolic process" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B2AGG2	SAHH_CUPTR	3, ., 3, ., 1, ., 1	0.5656	0.3927	0.5974	yes	N/A
B2U774	SAHH_RALPJ	3, ., 3, ., 1, ., 1	0.575	0.3927	0.5949	yes	N/A
Q9ABH0	SAHH_CAUCR	3, ., 3, ., 1, ., 1	0.5745	0.3844	0.5961	yes	N/A
B4SD43	SAHH_PELPB	3, ., 3, ., 1, ., 1	0.5902	0.3997	0.6093	yes	N/A
Q62G22	SAHH_BURMA	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
B8DR41	SAHH_DESVM	3, ., 3, ., 1, ., 1	0.5537	0.4011	0.6012	yes	N/A
Q3JY79	SAHH_BURP1	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
Q8KEG8	SAHH_CHLTE	3, ., 3, ., 1, ., 1	0.5781	0.3941	0.6008	yes	N/A
Q2STU0	SAHH_BURTA	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
A4SF77	SAHH_PROVI	3, ., 3, ., 1, ., 1	0.5936	0.4011	0.6114	yes	N/A
Q8PP84	SAHH_XANAC	3, ., 3, ., 1, ., 1	0.5634	0.3983	0.5958	yes	N/A
A1V8Z2	SAHH_BURMS	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
B2SPN6	SAHH_XANOP	3, ., 3, ., 1, ., 1	0.5603	0.3983	0.5958	yes	N/A
Q82WL1	SAHH_NITEU	3, ., 3, ., 1, ., 1	0.5590	0.3927	0.5899	yes	N/A
Q63PT2	SAHH_BURPS	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
Q87EI8	SAHH_XYLFT	3, ., 3, ., 1, ., 1	0.5590	0.3969	0.5937	yes	N/A
A2S6W2	SAHH_BURM9	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
Q01VU1	SAHH_SOLUE	3, ., 3, ., 1, ., 1	0.5924	0.3955	0.5978	yes	N/A
Q3BXC6	SAHH_XANC5	3, ., 3, ., 1, ., 1	0.5634	0.3983	0.5958	yes	N/A
Q8Y387	SAHH_RALSO	3, ., 3, ., 1, ., 1	0.5830	0.3941	0.5970	yes	N/A
A3MQW7	SAHH_BURM7	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
Q30WL8	SAHH_DESDG	3, ., 3, ., 1, ., 1	0.5509	0.3983	0.5970	yes	N/A
B2T6X2	SAHH_BURPP	3, ., 3, ., 1, ., 1	0.5714	0.3997	0.6067	yes	N/A
Q4UQZ8	SAHH_XANC8	3, ., 3, ., 1, ., 1	0.5634	0.3983	0.5958	yes	N/A
Q13T36	SAHH_BURXL	3, ., 3, ., 1, ., 1	0.5682	0.3997	0.6067	yes	N/A
Q3B532	SAHH_PELLD	3, ., 3, ., 1, ., 1	0.5937	0.3941	0.6008	yes	N/A
Q476T8	SAHH_CUPPJ	3, ., 3, ., 1, ., 1	0.5625	0.3927	0.5974	yes	N/A
Q9KZM1	SAHH_STRCO	3, ., 3, ., 1, ., 1	0.5283	0.4470	0.6618	yes	N/A
Q2NZE3	SAHH_XANOM	3, ., 3, ., 1, ., 1	0.5603	0.3983	0.5958	yes	N/A
Q64MT2	SAHH_BACFR	3, ., 3, ., 1, ., 1	0.5873	0.4011	0.5913	yes	N/A
Q8A407	SAHH_BACTN	3, ., 3, ., 1, ., 1	0.5899	0.3983	0.6008	yes	N/A
B0U232	SAHH_XYLFM	3, ., 3, ., 1, ., 1	0.5590	0.3969	0.5937	yes	N/A
Q7TTZ5	SAHH_RHOBA	3, ., 3, ., 1, ., 1	0.5846	0.3481	0.5580	yes	N/A
A3NER1	SAHH_BURP6	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
Q8PCH5	SAHH_XANCP	3, ., 3, ., 1, ., 1	0.5634	0.3983	0.5958	yes	N/A
B3EDY3	SAHH_CHLL2	3, ., 3, ., 1, ., 1	0.5937	0.3941	0.6008	yes	N/A
B2JIP4	SAHH_BURP8	3, ., 3, ., 1, ., 1	0.5650	0.3997	0.6067	yes	N/A
Q9PEJ1	SAHH_XYLFA	3, ., 3, ., 1, ., 1	0.5559	0.3969	0.5937	yes	N/A
Q82DC9	SAHH_STRAW	3, ., 3, ., 1, ., 1	0.5227	0.4442	0.6577	yes	N/A
A1BEZ2	SAHH_CHLPD	3, ., 3, ., 1, ., 1	0.5794	0.3955	0.6029	yes	N/A
B1VUW6	SAHH_STRGG	3, ., 3, ., 1, ., 1	0.5231	0.4498	0.6659	yes	N/A
A3P0L8	SAHH_BURP0	3, ., 3, ., 1, ., 1	0.5587	0.3997	0.6067	yes	N/A
Q3AQC2	SAHH_CHLCH	3, ., 3, ., 1, ., 1	0.5667	0.4178	0.6369	yes	N/A
Q0AEV8	SAHH_NITEC	3, ., 3, ., 1, ., 1	0.5723	0.3983	0.5983	yes	N/A
B2I7N4	SAHH_XYLF2	3, ., 3, ., 1, ., 1	0.5590	0.3969	0.5937	yes	N/A
Q27580	SAHH_DROME	3, ., 3, ., 1, ., 1	0.8603	0.2409	0.4004	yes	N/A
B3QMF5	SAHH_CHLP8	3, ., 3, ., 1, ., 1	0.5812	0.3941	0.6008	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	LOW CONFIDENCE prediction!
3rd Layer	3.3.1	0.921
3rd Layer	3.3.1.1	0.914

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	718
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	1e-160
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	1e-128
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	1e-120
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	1e-114
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	1e-107
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	1e-105
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	2e-96
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	2e-89
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	2e-88
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	1e-86
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	2e-85
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	2e-83
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	4e-74
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	1e-73
pfam00670	162	pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocystein	3e-73
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	3e-72
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	6e-72
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	1e-71
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	1e-71
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	1e-69
smart00997	162	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei	7e-68
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	1e-64
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	4e-64
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	6e-64
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	2e-62
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	4e-62
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	2e-61
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	2e-61
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	4e-61
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	5e-61
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	8e-61
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	1e-58
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	1e-55
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	1e-52
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	5e-49
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	8e-48
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	7e-47
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	4e-46
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	1e-45
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	4e-45
pfam00670	162	pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocystein	2e-42
smart00997	162	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei	9e-39
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	2e-33
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	6e-28
pfam00670	162	pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocystein	1e-11
smart00997	162	smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei	5e-10
smart00996	426	smart00996, AdoHcyase, S-adenosyl-L-homocysteine h	7e-10
cd00401	402	cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N	8e-10
PTZ00075	476	PTZ00075, PTZ00075, Adenosylhomocysteinase; Provis	6e-09
PRK05476	425	PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr	7e-09
pfam05221	430	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hy	3e-08
COG0499	420	COG0499, SAM1, S-adenosylhomocysteine hydrolase [C	7e-07
PLN02494	477	PLN02494, PLN02494, adenosylhomocysteinase	1e-06
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	1e-06
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	4e-06
TIGR00936	407	TIGR00936, ahcY, adenosylhomocysteinase	5e-06
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	6e-06
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	1e-05
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	3e-05
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	3e-05
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	1e-04
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	2e-04
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	0.002
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	0.002
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	0.003
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	0.003

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  472 bits (1216), Expect = e-160
 Identities = 190/314 (60%), Positives = 225/314 (71%), Gaps = 23/314 (7%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            DI LAE+GRK I +AENEMPGLMALR +YG  K LKGARI GCLHMTVQTAVLIETL  
Sbjct: 8   KDISLAEFGRKEIELAENEMPGLMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKA 67

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARG-VAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
           LGAEV+W SCNIFSTQDHAAAAIA  G V V+AWKGET EEY WC EQ L +P+G   N+
Sbjct: 68  LGAEVRWCSCNIFSTQDHAAAAIAKAGSVPVFAWKGETLEEYWWCTEQALKWPNGDGPNL 127

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD T LVHE                  GV    K+++E  +    ++ ++   K 
Sbjct: 128 IVDDGGDATLLVHE------------------GVK-AEKLYEEKGILPDPLDPSNEDEKC 168

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           L  +L           +K+   + +I G+SEETTTGVH LYKM K+ +L  PAINVNDSV
Sbjct: 169 LLTVLKKLLTKNP---DKWTNLVKKIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDSV 225

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDN+YGCR SL+DG+ RATD+M+AGK  VV GYGDVGKGCAQ+LR FG+RV+VTEI
Sbjct: 226 TKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEI 285

Query: 301 DPINALQASMEGYE 314
           DPI ALQA+MEGY+
Sbjct: 286 DPICALQAAMEGYQ 299

Length = 476

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  386 bits (993), Expect = e-128
 Identities = 138/178 (77%), Positives = 154/178 (86%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
           ADI LA+WGRK I +AE EMPGLMALR +YGA+K LKGARIAGCLHMT+QTAVLIETL+ 
Sbjct: 3   ADISLADWGRKEIEIAETEMPGLMALREEYGAEKPLKGARIAGCLHMTIQTAVLIETLVA 62

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
           LGAEV+W+SCNIFSTQDHAAAAIAA GV V+AWKGET EEY WCIEQTL +PDG   NMI
Sbjct: 63  LGAEVRWASCNIFSTQDHAAAAIAAAGVPVFAWKGETLEEYWWCIEQTLTWPDGWGPNMI 122

Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           LDDGGD T LVH+KYP+ L +IRG+SEETTTGVH LY+M K+ KL  PAINVNDSVTK
Sbjct: 123 LDDGGDATLLVHKKYPRMLKKIRGVSEETTTGVHRLYQMAKKGKLLFPAINVNDSVTK 180

Length = 426

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  367 bits (943), Expect = e-120
 Identities = 173/315 (54%), Positives = 209/315 (66%), Gaps = 22/315 (6%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           + D+  A++GR  I +AE EMPGLMA R ++G  +  KGARI G LHMT+QTAVLIETL 
Sbjct: 8   VKDMSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLT 67

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEV+W SCNIFSTQDHAAAAIA    AV+AWKGET +EY WC E+ L +  G   ++
Sbjct: 68  ALGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDL 127

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           I+DDGGD T L+HE                  GV    +  K+  L  P    N      
Sbjct: 128 IVDDGGDATLLIHE------------------GVKAEEEFEKDGTLPDPTSTDNAEFKIV 169

Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           L +I     D   +  +KY +    + G+SEETTTGV  LY+M K   L  PAINVNDSV
Sbjct: 170 LTII----KDGLKVDPKKYHKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAINVNDSV 225

Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCR SL DGL RATD+M+AGKVAV+ GYGDVGKGCA +++  G+RVIVTEI
Sbjct: 226 TKSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEI 285

Query: 301 DPINALQASMEGYEL 315
           DPI ALQA MEGY++
Sbjct: 286 DPICALQALMEGYQV 300

Length = 477

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  350 bits (899), Expect = e-114
 Identities = 135/178 (75%), Positives = 151/178 (84%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            DI LA +GRK I +AENEMPGLMALR +YG  + LKGARIAGCLHMTVQTAVLIETL+ 
Sbjct: 6   KDISLAAFGRKEIELAENEMPGLMALREEYGPSQPLKGARIAGCLHMTVQTAVLIETLVA 65

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
           LGAEV+W+SCNIFSTQDHAAAAIAA GV V+AWKGET EEY WCIE+ L F DG+  NMI
Sbjct: 66  LGAEVRWASCNIFSTQDHAAAAIAAAGVPVFAWKGETLEEYWWCIERALTFKDGQGPNMI 125

Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           LDDGGD T L+H+KYPQ+L+ IRG+SEETTTGVH LYKM K+ KL  PAINVNDSVTK
Sbjct: 126 LDDGGDATLLIHKKYPQYLAGIRGVSEETTTGVHRLYKMLKKGKLLFPAINVNDSVTK 183

Length = 430

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  333 bits (857), Expect = e-107
 Identities = 122/179 (68%), Positives = 142/179 (79%), Gaps = 3/179 (1%)

Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA+WGRK I  AE EMPGLMA+R ++ A+K LKGARIAGCLHMT+QTAVLIETL 
Sbjct: 10  VADISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLK 69

Query: 61  ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEV+W+SCN FSTQD  AAA+AA G+ V+AWKGET EEY  CIE+ L   DG   NM
Sbjct: 70  ALGAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLEEYWECIERAL---DGHGPNM 126

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           ILDDGGDLT LVH + P+ L+ I+G++EETTTGVH LY M K+  L  PAINVNDSVTK
Sbjct: 127 ILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVTK 185

Length = 425

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  326 bits (838), Expect = e-105
 Identities = 113/172 (65%), Positives = 127/172 (73%), Gaps = 4/172 (2%)

Query: 8   EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQ 67
           E+GRK I  AE EMP LMALR +Y  +K LKGARIAGCLHMT QTAVLIETL  LGAEV+
Sbjct: 1   EFGRKEIEWAEQEMPVLMALRERYAKEKPLKGARIAGCLHMTAQTAVLIETLKALGAEVR 60

Query: 68  WSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGD 127
           W SCN  STQD  AAA+A  G+ V+AWKGET+EEY WCIEQ L        N+I+DDGGD
Sbjct: 61  WCSCNPLSTQDDVAAALAEAGIPVFAWKGETEEEYWWCIEQAL----DHGPNLIIDDGGD 116

Query: 128 LTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           LT+L+H K P  L +I G SEETTTGVH L  M KE KL  PAI VND+VTK
Sbjct: 117 LTHLLHTKRPDLLKKIIGGSEETTTGVHRLRAMEKEGKLLFPAIAVNDAVTK 168

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  304 bits (782), Expect = 2e-96
 Identities = 111/145 (76%), Positives = 125/145 (86%), Gaps = 2/145 (1%)

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
              NMILDDGGD T LVH+KYP+ L +IRG+SEETTTGVH LY+M K+ KL  PAINVND
Sbjct: 117 WGPNMILDDGGDATLLVHKKYPRMLKKIRGVSEETTTGVHRLYQMAKKGKLLFPAINVND 176

Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
           SVTKSKFDNLYGCRESLVDG+KRATD+M+AGKVAVV GYGDVGKGCAQSLR  G+RVIVT
Sbjct: 177 SVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAVVCGYGDVGKGCAQSLRGQGARVIVT 236

Query: 299 EIDPINALQASMEGYELD--EEVAA 321
           EIDPI ALQA+M+G+E+   EEVA 
Sbjct: 237 EIDPICALQAAMDGFEVVTMEEVAP 261

Length = 426

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  286 bits (733), Expect = 2e-89
 Identities = 109/179 (60%), Positives = 129/179 (72%), Gaps = 5/179 (2%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            DI LA+ GRK I  AE EMP LMA+R ++  +K LKGARIAGCLHMT +TAVLIETL  
Sbjct: 8   KDISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKA 67

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAAR-GVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            GAEV+W+SCN  STQD  AAA+AA+ G+ V+AWKGET EEY   I+Q L        N+
Sbjct: 68  GGAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVL----DWEPNI 123

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           I+DDGGDLT LVH + P+ L  I+G +EETTTGVH L  M K+  L  PAINVNDSVTK
Sbjct: 124 IIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRAMEKDGVLKFPAINVNDSVTK 182

Length = 420

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  283 bits (726), Expect = 2e-88
 Identities = 110/145 (75%), Positives = 124/145 (85%), Gaps = 3/145 (2%)

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
           +  NMILDDGGD T L+H+KYPQ+L+ IRG+SEETTTGVH LYKM K+ KL  PAINVND
Sbjct: 120 QGPNMILDDGGDATLLIHKKYPQYLAGIRGVSEETTTGVHRLYKMLKKGKLLFPAINVND 179

Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
           SVTKSKFDNLYGCRESL DG+KRATD+M+AGKVAVV GYGDVGKGCA SLR  G+RVIVT
Sbjct: 180 SVTKSKFDNLYGCRESLPDGIKRATDVMIAGKVAVVCGYGDVGKGCAASLRGQGARVIVT 239

Query: 299 EIDPINALQASMEGYE---LDEEVA 320
           EIDPI ALQA+MEGY+   L+E V 
Sbjct: 240 EIDPICALQAAMEGYQVVTLEEVVK 264

Length = 430

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  278 bits (713), Expect = 1e-86
 Identities = 87/136 (63%), Positives = 105/136 (77%)

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
              N+I+DDGGDLT+L+H K P  L +I G SEETTTGVH L  M KE KL  PAI VND
Sbjct: 105 HGPNLIIDDGGDLTHLLHTKRPDLLKKIIGGSEETTTGVHRLRAMEKEGKLLFPAIAVND 164

Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
           +VTK KFDN YG  +S +DG+KRAT++++AGKV VVAGYG VGKGCA   R  G+RVIVT
Sbjct: 165 AVTKHKFDNRYGTGQSTIDGIKRATNVLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVT 224

Query: 299 EIDPINALQASMEGYE 314
           E+DPI ALQA+M+G+E
Sbjct: 225 EVDPICALQAAMDGFE 240

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  275 bits (706), Expect = 2e-85
 Identities = 94/133 (70%), Positives = 112/133 (84%)

Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
           NMILDDGGDLT LVH + P+ L+ I+G++EETTTGVH LY M K+  L  PAINVNDSVT
Sbjct: 125 NMILDDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYAMAKDGALKFPAINVNDSVT 184

Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
           KSKFDN YG  ESL+DG+KRAT++++AGKV VVAGYGDVGKGCAQ LR  G+RVIVTE+D
Sbjct: 185 KSKFDNRYGTGESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVD 244

Query: 302 PINALQASMEGYE 314
           PI ALQA+M+G+ 
Sbjct: 245 PICALQAAMDGFR 257

Length = 425

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  270 bits (691), Expect = 2e-83
 Identities = 98/173 (56%), Positives = 118/173 (68%), Gaps = 5/173 (2%)

Query: 8   EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQ 67
             GRK I  AE EMP LM +R ++  +K LKGARIA CLH+TV+TAVLIETL+  GAEV 
Sbjct: 1   AEGRKKIEWAEREMPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVA 60

Query: 68  WSSCNIFSTQDHAAAAIAA-RGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGG 126
           W+SCN  STQD  AAA+A   G+ V+AW+GET+EEY W IEQ L        N+I+DDG 
Sbjct: 61  WTSCNPLSTQDDVAAALAKGAGIPVFAWRGETNEEYYWAIEQVL----DHEPNIIIDDGA 116

Query: 127 DLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           DL  L+H + P+ L +I G SEETTTGV  L  M  E  L  PAINVND+ TK
Sbjct: 117 DLIFLLHTERPELLEKIIGGSEETTTGVIRLRAMEAEGVLKFPAINVNDAYTK 169

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  245 bits (629), Expect = 4e-74
 Identities = 88/108 (81%), Positives = 97/108 (89%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA+WGRK I +AE EMPGLMALR +YGA+K LKGARIAGCLHMT+QTAVLIETL+ L
Sbjct: 4   DISLADWGRKEIEIAETEMPGLMALREEYGAEKPLKGARIAGCLHMTIQTAVLIETLVAL 63

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
           GAEV+W+SCNIFSTQDHAAAAIAA GV V+AWKGET EEY WCIEQTL
Sbjct: 64  GAEVRWASCNIFSTQDHAAAAIAAAGVPVFAWKGETLEEYWWCIEQTL 111

Length = 426

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  244 bits (624), Expect = 1e-73
 Identities = 83/137 (60%), Positives = 103/137 (75%)

Query: 178 TKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVN 237
               N+I+DDGGDLT LVH + P+ L  I+G +EETTTGVH L  M K+  L  PAINVN
Sbjct: 118 DWEPNIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTGVHRLRAMEKDGVLKFPAINVN 177

Query: 238 DSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV 297
           DSVTKS FDN YG  +SL+DG+ RAT+++LAGK  VVAGYG VG+G A  LR  G+RVIV
Sbjct: 178 DSVTKSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIV 237

Query: 298 TEIDPINALQASMEGYE 314
           TE+DPI AL+A+M+G+ 
Sbjct: 238 TEVDPIRALEAAMDGFR 254

Length = 420

>gnl|CDD|109716 pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  234 bits (598), Expect = 3e-73
 Identities = 81/118 (68%), Positives = 97/118 (82%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVV GYGDVGKGCA SL+  G+RVIVTEIDPI ALQA+MEG++V T+EE  K
Sbjct: 18  DVMIAGKVAVVCGYGDVGKGCAASLKGQGARVIVTEIDPICALQAAMEGFQVVTLEEVVK 77

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           +  IFVTTTG KDII GEH  +M++DAIVCNIGHFD EI V+WL+ N  +  N+KPQV
Sbjct: 78  KADIFVTTTGNKDIITGEHMAKMKNDAIVCNIGHFDNEIDVAWLNTNGKKWENIKPQV 135

Length = 162

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  240 bits (614), Expect = 3e-72
 Identities = 77/118 (65%), Positives = 95/118 (80%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           ++++AGKV VVAGYG VGKGCA   R  G+RVIVTE+DPI ALQA+M+G+EV  MEEAAK
Sbjct: 190 NVLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVTEVDPICALQAAMDGFEVMPMEEAAK 249

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
            G IFVT TG KD+IRGEHF +M+D AI+CN GHFD EI V+ L++ AVEK  ++PQV
Sbjct: 250 IGDIFVTATGNKDVIRGEHFEKMKDGAILCNAGHFDVEIDVAALEELAVEKREIRPQV 307

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  239 bits (611), Expect = 6e-72
 Identities = 75/143 (52%), Positives = 97/143 (67%)

Query: 172 NVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGV 231
            +   +    N+I+DDG DL  L+H + P+ L +I G SEETTTGV  L  M  E  L  
Sbjct: 99  AIEQVLDHEPNIIIDDGADLIFLLHTERPELLEKIIGGSEETTTGVIRLRAMEAEGVLKF 158

Query: 232 PAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLF 291
           PAINVND+ TKS FDN YG  +S +DG+ RAT++++AGK  VVAGYG  GKG A   R  
Sbjct: 159 PAINVNDAYTKSLFDNRYGTGQSTIDGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGM 218

Query: 292 GSRVIVTEIDPINALQASMEGYE 314
           G+RVIVTE+DPI AL+A+M+G+ 
Sbjct: 219 GARVIVTEVDPIRALEAAMDGFR 241

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  239 bits (612), Expect = 1e-71
 Identities = 82/107 (76%), Positives = 93/107 (86%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VD  T P+G  IILLAEGRLVNLGCA GHPSFVMSNSFTNQVLAQIEL+TK  +Y  GVY
Sbjct: 320 VDHITFPDGKRIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELFTKPGKYKNGVY 379

Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYR 717
           +LPKKLDE+VA LHLE LG KLTKLT++QA Y+G+P+EGP+KPDHYR
Sbjct: 380 VLPKKLDEKVARLHLEKLGAKLTKLTKEQADYIGVPVEGPFKPDHYR 426

Length = 426

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  238 bits (611), Expect = 1e-71
 Identities = 81/119 (68%), Positives = 94/119 (78%), Gaps = 1/119 (0%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVV GYGDVGKGCAQSLR  G+RVIVTEIDPI ALQA+M+G+EV TMEE A 
Sbjct: 202 DVMIAGKVAVVCGYGDVGKGCAQSLRGQGARVIVTEIDPICALQAAMDGFEVVTMEEVAP 261

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA-VEKVNVKPQV 460
           +  IFVTTTG KD+I  EH   M+D AIVCNIGHFD EI V+ L  N  ++  N+KPQV
Sbjct: 262 QADIFVTTTGNKDVITREHMRAMKDGAIVCNIGHFDNEIDVASLRNNPGLKWENIKPQV 320

Length = 426

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  233 bits (598), Expect = 1e-69
 Identities = 75/118 (63%), Positives = 93/118 (78%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           ++++AGKV VVAGYGDVGKGCAQ LR  G+RVIVTE+DPI ALQA+M+G+ V TMEEAA+
Sbjct: 207 NVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAE 266

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
            G IFVT TG KD+I  EH   M+D AI+ NIGHFD EI V+ L++ AV+   +KPQV
Sbjct: 267 LGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQV 324

Length = 425

>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  219 bits (561), Expect = 7e-68
 Identities = 75/119 (63%), Positives = 90/119 (75%)

Query: 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAA 401
            +++LAGK  VVAGYGDVGKG A  LR  G+RVIVTEIDPI AL+A+M+G+EV  MEEAA
Sbjct: 17  TNVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTEIDPIRALEAAMDGFEVMKMEEAA 76

Query: 402 KEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           K   IFVT TG KD+I  EHF  M+D AI+ N GHFD EI V+ L++ AVEK  V+PQV
Sbjct: 77  KRADIFVTATGNKDVITREHFRAMKDGAILANAGHFDVEIDVAALEELAVEKREVRPQV 135

Length = 162

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  221 bits (566), Expect = 1e-64
 Identities = 75/119 (63%), Positives = 93/119 (78%), Gaps = 1/119 (0%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGK  VV GYGDVGKGCAQ+LR FG+RV+VTEIDPI ALQA+MEGY+V T+E+  +
Sbjct: 249 DVMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVE 308

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK-NAVEKVNVKPQV 460
              IFVT TG KDII  EH  +M+++AIV NIGHFD EIQV+ L+    +E V +KPQV
Sbjct: 309 TADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQV 367

Length = 476

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  218 bits (559), Expect = 4e-64
 Identities = 81/122 (66%), Positives = 94/122 (77%), Gaps = 5/122 (4%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA+WGRK I  AE EMPGLMA+R ++ A+K LKGARIAGCLHMT+QTAVLIETL  L
Sbjct: 12  DISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKAL 71

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHI 622
           GAEV+W+SCN FSTQD  AAA+AA G+ V+AWKGET EEY  CIE+ L      PN   +
Sbjct: 72  GAEVRWASCNPFSTQDDVAAALAAAGIPVFAWKGETLEEYWECIERALDGHG--PN---M 126

Query: 623 IL 624
           IL
Sbjct: 127 IL 128

Length = 425

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  218 bits (558), Expect = 6e-64
 Identities = 85/109 (77%), Positives = 94/109 (86%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA +GRK I +AENEMPGLMALR +YG  + LKGARIAGCLHMTVQTAVLIETL+ L
Sbjct: 7   DISLAAFGRKEIELAENEMPGLMALREEYGPSQPLKGARIAGCLHMTVQTAVLIETLVAL 66

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLV 611
           GAEV+W+SCNIFSTQDHAAAAIAA GV V+AWKGET EEY WCIE+ L 
Sbjct: 67  GAEVRWASCNIFSTQDHAAAAIAAAGVPVFAWKGETLEEYWWCIERALT 115

Length = 430

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  216 bits (551), Expect = 2e-62
 Identities = 85/110 (77%), Positives = 90/110 (81%), Gaps = 1/110 (0%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LAE+GRK I +AENEMPGLMALR +YG  K LKGARI GCLHMTVQTAVLIETL  L
Sbjct: 9   DISLAEFGRKEIELAENEMPGLMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKAL 68

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARG-VAVYAWKGETDEEYVWCIEQTLV 611
           GAEV+W SCNIFSTQDHAAAAIA  G V V+AWKGET EEY WC EQ L 
Sbjct: 69  GAEVRWCSCNIFSTQDHAAAAIAKAGSVPVFAWKGETLEEYWWCTEQALK 118

Length = 476

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score =  215 bits (549), Expect = 4e-62
 Identities = 82/110 (74%), Positives = 93/110 (84%), Gaps = 2/110 (1%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTK--HSQYPVG 668
           VDRYT P+G  IILLAEGRLVNLGCA GHPSFVMSNSFTNQVLAQIELW      +YP G
Sbjct: 367 VDRYTFPDGKGIILLAEGRLVNLGCATGHPSFVMSNSFTNQVLAQIELWENRDTGKYPNG 426

Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           VY LPK+LDE+VA LHL+ LG KLTKLT+ QA+Y+G+P++GPYK DHYRY
Sbjct: 427 VYKLPKELDEKVARLHLKKLGAKLTKLTDKQAEYIGVPVDGPYKSDHYRY 476

Length = 476

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  211 bits (539), Expect = 2e-61
 Identities = 73/103 (70%), Positives = 81/103 (78%)

Query: 508 EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQ 567
           E+GRK I  AE EMP LMALR +Y  +K LKGARIAGCLHMT QTAVLIETL  LGAEV+
Sbjct: 1   EFGRKEIEWAEQEMPVLMALRERYAKEKPLKGARIAGCLHMTAQTAVLIETLKALGAEVR 60

Query: 568 WSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
           W SCN  STQD  AAA+A  G+ V+AWKGET+EEY WCIEQ L
Sbjct: 61  WCSCNPLSTQDDVAAALAEAGIPVFAWKGETEEEYWWCIEQAL 103

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  211 bits (538), Expect = 2e-61
 Identities = 76/118 (64%), Positives = 92/118 (77%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           ++++AGK  VVAGYG  GKG A   R  G+RVIVTE+DPI AL+A+M+G+ V TMEEAAK
Sbjct: 191 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAK 250

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
            G IF+T TG KD+IRGEHF  M+D AIV NIGHFD EI V  L++ AVEKVNV+PQV
Sbjct: 251 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKVNVRPQV 308

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  210 bits (537), Expect = 4e-61
 Identities = 85/118 (72%), Positives = 97/118 (82%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVV GYGDVGKGCA SLR  G+RVIVTEIDPI ALQA+MEGY+V T+EE  K
Sbjct: 205 DVMIAGKVAVVCGYGDVGKGCAASLRGQGARVIVTEIDPICALQAAMEGYQVVTLEEVVK 264

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           +  IFVTTTGC DII G HF+ M+ DAIVCNIGHFDCEI V WL+ NA +  N+KPQV
Sbjct: 265 DADIFVTTTGCVDIIVGRHFMNMKKDAIVCNIGHFDCEIDVGWLNYNAKKITNIKPQV 322

Length = 430

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  210 bits (537), Expect = 5e-61
 Identities = 74/119 (62%), Positives = 92/119 (77%)

Query: 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAA 401
            +++LAGK  VVAGYG VG+G A  LR  G+RVIVTE+DPI AL+A+M+G+ V TMEEAA
Sbjct: 203 TNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAA 262

Query: 402 KEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           K G IFVT TG KD+IR EHF +M+D AI+ N GHFD EI V+ L++ AVEK  V+PQV
Sbjct: 263 KTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQV 321

Length = 420

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score =  210 bits (536), Expect = 8e-61
 Identities = 86/109 (78%), Positives = 96/109 (88%), Gaps = 2/109 (1%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTK--HSQYPVG 668
           VDRYTLPNG  IILLAEGRL+NLGCA GHPSFVMSNSFTNQVLAQIELWTK    +Y VG
Sbjct: 322 VDRYTLPNGRRIILLAEGRLLNLGCATGHPSFVMSNSFTNQVLAQIELWTKRDTGKYEVG 381

Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYR 717
           VY+LPK LDE+VA LHL  LGVKLTKLT+ QA+Y+G+P+EGP+KPDHYR
Sbjct: 382 VYVLPKHLDEKVARLHLGKLGVKLTKLTDKQAEYIGVPVEGPFKPDHYR 430

Length = 430

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score =  203 bits (520), Expect = 1e-58
 Identities = 68/102 (66%), Positives = 81/102 (79%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VD YTLP+G  IILLAEGRLVNLG A GHPS VM  SF NQ LAQIEL+T   +   GVY
Sbjct: 324 VDEYTLPDGKRIILLAEGRLVNLGAATGHPSEVMDMSFANQALAQIELFTNRGKLEPGVY 383

Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYK 712
           +LPK+LDEEVA L L+ LGVKL +LTE+QA+Y+G+ +EGP+K
Sbjct: 384 VLPKELDEEVARLKLKALGVKLDELTEEQAEYIGVWVEGPFK 425

Length = 425

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score =  194 bits (497), Expect = 1e-55
 Identities = 67/96 (69%), Positives = 74/96 (77%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VD YTLP+G  IILLAEGRLVNL CA GHPSFVM  SF NQ LAQIELW    +   GVY
Sbjct: 307 VDEYTLPDGRRIILLAEGRLVNLACATGHPSFVMDMSFANQALAQIELWKNRDKLEPGVY 366

Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLP 706
           +LPK+LDEEVA L LE LG+KL KLTE+QA+YLG  
Sbjct: 367 VLPKELDEEVARLKLEALGIKLDKLTEEQAEYLGSW 402

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  187 bits (477), Expect = 1e-52
 Identities = 70/109 (64%), Positives = 83/109 (76%), Gaps = 1/109 (0%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA+ GRK I  AE EMP LMA+R ++  +K LKGARIAGCLHMT +TAVLIETL   
Sbjct: 9   DISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAG 68

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAAR-GVAVYAWKGETDEEYVWCIEQTL 610
           GAEV+W+SCN  STQD  AAA+AA+ G+ V+AWKGET EEY   I+Q L
Sbjct: 69  GAEVRWASCNPLSTQDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVL 117

Length = 420

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  179 bits (455), Expect = 5e-49
 Identities = 72/111 (64%), Positives = 87/111 (78%), Gaps = 3/111 (2%)

Query: 611 VDRYTLPNGNH-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPV 667
            DR+  P+    II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW +    +Y  
Sbjct: 367 TDRWVFPDTGSGIIVLAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEK 426

Query: 668 GVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            VY+LPK LDE+VAALHL  LG KLTKL++DQA Y+ +P+EGPYKP HYRY
Sbjct: 427 KVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYINVPVEGPYKPAHYRY 477

Length = 477

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score =  174 bits (443), Expect = 8e-48
 Identities = 62/101 (61%), Positives = 71/101 (70%)

Query: 610 LVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGV 669
            VD Y LP+G  IILLAEGRLVNL  A GHPS VM  SF NQ LAQI L   H +   GV
Sbjct: 320 QVDEYELPDGKRIILLAEGRLVNLAAATGHPSEVMDMSFANQALAQIYLVKNHGKLEPGV 379

Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP 710
           Y LPK+LDEEVA L LE +G++L +LTE+QA+YLG   EG 
Sbjct: 380 YRLPKELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEGT 420

Length = 420

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  171 bits (434), Expect = 7e-47
 Identities = 64/104 (61%), Positives = 77/104 (74%), Gaps = 1/104 (0%)

Query: 508 EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQ 567
             GRK I  AE EMP LM +R ++  +K LKGARIA CLH+TV+TAVLIETL+  GAEV 
Sbjct: 1   AEGRKKIEWAEREMPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVA 60

Query: 568 WSSCNIFSTQDHAAAAIAA-RGVAVYAWKGETDEEYVWCIEQTL 610
           W+SCN  STQD  AAA+A   G+ V+AW+GET+EEY W IEQ L
Sbjct: 61  WTSCNPLSTQDDVAAALAKGAGIPVFAWRGETNEEYYWAIEQVL 104

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  170 bits (433), Expect = 4e-46
 Identities = 71/108 (65%), Positives = 83/108 (76%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           D+  A++GR  I +AE EMPGLMA R ++G  +  KGARI G LHMT+QTAVLIETL  L
Sbjct: 10  DMSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTAL 69

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
           GAEV+W SCNIFSTQDHAAAAIA    AV+AWKGET +EY WC E+ L
Sbjct: 70  GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERAL 117

Length = 477

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score =  167 bits (426), Expect = 1e-45
 Identities = 56/100 (56%), Positives = 66/100 (66%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VD Y L +G  I LLAEGRLVNL  A GHPS VM  SF NQ LA   LW  H +   GVY
Sbjct: 308 VDEYILKDGRRIYLLAEGRLVNLAAAEGHPSEVMDMSFANQALAAEYLWKNHDKLEPGVY 367

Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP 710
            LPK+LDE VA L LE +G+++ +LTE+Q +YLG   EG 
Sbjct: 368 RLPKELDEMVARLKLEAMGIEIDELTEEQKEYLGSWEEGT 407

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score =  168 bits (426), Expect = 4e-45
 Identities = 71/119 (59%), Positives = 92/119 (77%), Gaps = 1/119 (0%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAV+ GYGDVGKGCA +++  G+RVIVTEIDPI ALQA MEGY+V T+E+   
Sbjct: 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVS 308

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK-NAVEKVNVKPQV 460
           E  IFVTTTG KDII  +H  +M+++AIVCNIGHFD EI +  L+    V+++ +KPQ 
Sbjct: 309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQT 367

Length = 477

>gnl|CDD|109716 pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  150 bits (381), Expect = 2e-42
 Identities = 57/77 (74%), Positives = 67/77 (87%), Gaps = 2/77 (2%)

Query: 247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL 306
           NLYGCRESL+DG+KRATD+M+AGKVAVV GYGDVGKGCA SL+  G+RVIVTEIDPI AL
Sbjct: 1   NLYGCRESLIDGIKRATDVMIAGKVAVVCGYGDVGKGCAASLKGQGARVIVTEIDPICAL 60

Query: 307 QASMEGYELD--EEVAA 321
           QA+MEG+++   EEV  
Sbjct: 61  QAAMEGFQVVTLEEVVK 77

Length = 162

>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score =  140 bits (356), Expect = 9e-39
 Identities = 49/77 (63%), Positives = 60/77 (77%), Gaps = 2/77 (2%)

Query: 247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL 306
           N YG  ESL+DG+ RAT+++LAGK  VVAGYGDVGKG A  LR  G+RVIVTEIDPI AL
Sbjct: 1   NRYGTGESLLDGILRATNVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTEIDPIRAL 60

Query: 307 QASMEGYELD--EEVAA 321
           +A+M+G+E+   EE A 
Sbjct: 61  EAAMDGFEVMKMEEAAK 77

Length = 162

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score =  130 bits (328), Expect = 2e-33
 Identities = 53/206 (25%), Positives = 76/206 (36%), Gaps = 22/206 (10%)

Query: 180 PLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDS 239
            L+++L     LTN       Q     R +   T    H         + G+ AI V   
Sbjct: 64  SLDVVLKVKEPLTN-AEYALIQ-KLGDRLLFTYTIGADHRDLTEAL-ARAGLTAIAVEGV 120

Query: 240 VTKSKFDNLYGCRESLVDGLKRATDI----------MLAGKVAVVAGYGDVGKGCAQSLR 289
                  N  G  E  V  + R  ++           +AGK  VV G G VGK  AQ LR
Sbjct: 121 ELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPDVAGKTVVVVGAGVVGKEAAQMLR 180

Query: 290 LFGSRVIVTEIDPINALQASMEGY----ELDEEVAALHLEHLGVKLTKLTE---DQAKYL 342
             G++V++T+I+     Q    G     EL+E +A   +      L           + +
Sbjct: 181 GLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILVPEELV 240

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLR 368
           + M  G V V    G V  GC Q+L 
Sbjct: 241 EQMKPGSVIVNVAVGAV--GCVQALH 264

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score =  114 bits (287), Expect = 6e-28
 Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 6/119 (5%)

Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG-YEVTTMEEAAKE 403
            +AGK  VV G G VGK  AQ LR  G++V++T+I+     Q    G   V  +EEA  E
Sbjct: 157 DVAGKTVVVVGAGVVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAE 216

Query: 404 GGIFVTTTGCKDIIRG-----EHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVK 457
             + VTTT       G     E   QM+  +++ N+         +   +   E   V 
Sbjct: 217 ADVIVTTTLLPGKRAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVV 275

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|109716 pfam00670, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 25/28 (89%), Positives = 26/28 (92%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMG 638
           VDRYTLP+G HIILLAEGRLVNLGCA G
Sbjct: 135 VDRYTLPDGKHIILLAEGRLVNLGCATG 162

Length = 162

>gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain

 Score = 58.6 bits (143), Expect = 5e-10
 Identities = 20/28 (71%), Positives = 21/28 (75%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMG 638
           VD YTLP+G  I LLAEGRLVNL  A G
Sbjct: 135 VDEYTLPDGKRIYLLAEGRLVNLAAATG 162

Length = 162

>gnl|CDD|214963 smart00996, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score = 61.4 bits (150), Expect = 7e-10
 Identities = 21/35 (60%), Positives = 28/35 (80%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
           +LDE+VA LHLE LG KLTKLT++QA Y+ + + G
Sbjct: 384 KLDEKVARLHLEKLGAKLTKLTKEQADYIGVPVEG 418

Length = 426

>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains

 Score = 60.9 bits (149), Expect = 8e-10
 Identities = 22/31 (70%), Positives = 25/31 (80%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
           ELDEEVA L LE LG+KL KLTE+QA+YL  
Sbjct: 371 ELDEEVARLKLEALGIKLDKLTEEQAEYLGS 401

S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402

>gnl|CDD|240258 PTZ00075, PTZ00075, Adenosylhomocysteinase; Provisional

 Score = 58.9 bits (143), Expect = 6e-09
 Identities = 21/35 (60%), Positives = 28/35 (80%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
           ELDE+VA LHL+ LG KLTKLT+ QA+Y+ + + G
Sbjct: 433 ELDEKVARLHLKKLGAKLTKLTDKQAEYIGVPVDG 467

Length = 476

>gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional

 Score = 58.2 bits (142), Expect = 7e-09
 Identities = 20/29 (68%), Positives = 25/29 (86%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYL 342
           ELDEEVA L L+ LGVKL +LTE+QA+Y+
Sbjct: 388 ELDEEVARLKLKALGVKLDELTEEQAEYI 416

Length = 425

>gnl|CDD|218507 pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 21/34 (61%), Positives = 27/34 (79%)

Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
           LDE+VA LHL  LGVKLTKLT+ QA+Y+ + + G
Sbjct: 389 LDEKVARLHLGKLGVKLTKLTDKQAEYIGVPVEG 422

Length = 430

>gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 20/35 (57%), Positives = 26/35 (74%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
           ELDEEVA L LE +G++L +LTE+QA+YL     G
Sbjct: 385 ELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEG 419

Length = 420

>gnl|CDD|178111 PLN02494, PLN02494, adenosylhomocysteinase

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 21/34 (61%), Positives = 28/34 (82%)

Query: 315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
           LDE+VAALHL  LG KLTKL++DQA Y+++ + G
Sbjct: 435 LDEKVAALHLGKLGAKLTKLSKDQADYINVPVEG 468

Length = 477

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 51.1 bits (122), Expect = 1e-06
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 542 IAGCLHMTVQTA------VLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWK 595
           IAG   +  +         ++ TL+E G EV+  +           A + A  + V   K
Sbjct: 1   IAGPKEIKNEEFRVGLSPSVVATLVEAGHEVRVETGAGIGAGFADQAYVQAGAIVVTLAK 60

Query: 596 GETDEEYVWCIEQTLV-DRYTLPNGNHIILLAE 627
                + V  +++ L    Y L       LL  
Sbjct: 61  ALWSLDVVLKVKEPLTNAEYALIQKLGDRLLFT 93

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
           LAGK  ++ G GD+G+  A+  + FG RVI        A     E Y    ++E   E  
Sbjct: 132 LAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVDEVYTPDELDELLPEAD 191

Query: 406 IFVTT------TGCKDIIRGEHFLQMRDDAIVCNIG 435
             V        T  + +   E F  M+  A++ N+G
Sbjct: 192 YVVNALPLTPET--RGLFNAERFAAMKPGAVLINVG 225

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase

 Score = 48.9 bits (117), Expect = 5e-06
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 313 YELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
            ELDE VA L LE +G+++ +LTE+Q +YL  
Sbjct: 371 KELDEMVARLKLEAMGIEIDELTEEQKEYLGS 402

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 11/49 (22%), Positives = 20/49 (40%)

Query: 610 LVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIEL 658
            +    L  G+ ++   +  +   GCAMG P         N + A ++L
Sbjct: 262 ALHTQLLEEGHGVVHYGDVNMPGPGCAMGVPWDATLRLAANTLPALVKL 310

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 47.5 bits (114), Expect = 1e-05
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYEVTTMEEAAKE 403
            L GK   + G+G +G+  A+ L+ FG+ V+V   DP ++  +   +G +  ++EE  K 
Sbjct: 144 ELRGKTVGIVGFGAIGRRVAKRLKAFGAEVLVY--DPYVDPEKIEADGVKKVSLEELLKR 201

Query: 404 GGIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
             + V+     T   + +I  E F  M+  A   N
Sbjct: 202 SDV-VSLHARLTPETRGMIGAEEFALMKPTAYFIN 235

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 46.5 bits (111), Expect = 3e-05
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 11/98 (11%)

Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG 404
            L GK   + GYG +G+  A+ L+ FG RVI     P    + +     ++ ++EA ++ 
Sbjct: 134 ELRGKTVGILGYGHIGREIARLLKAFGMRVIGVSRSP-KEDEGADFVGTLSDLDEALEQA 192

Query: 405 GIFV-------TTTGCKDIIRGEHFLQMRDDAIVCNIG 435
            + V        T G   +I       M+  AI+ N+G
Sbjct: 193 DVVVVALPLTKQTRG---LIGAAELAAMKPGAILVNVG 227

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 4/95 (4%)

Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG 404
            L+GK   + G G++G+  A+ LR FG  VI  +       +    G     ++E   E 
Sbjct: 139 ELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEAEEKDLGVRYVELDELLAES 198

Query: 405 GIFVT----TTGCKDIIRGEHFLQMRDDAIVCNIG 435
            +       T   + +I  E    M+  AI+ N  
Sbjct: 199 DVVSLHVPLTPETRHLIGAEELAAMKPGAILINTA 233

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 26/106 (24%), Positives = 42/106 (39%), Gaps = 10/106 (9%)

Query: 337 DQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTT 396
           D+  +    LAGK   + G G +G+  A+ L+ FG +VI  +               V +
Sbjct: 131 DRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDS 190

Query: 397 MEEAAKEGGIFV-------TTTGCKDIIRGEHFLQMRDDAIVCNIG 435
           ++E   E  I          T G   +I  E   +M+  AI+ N  
Sbjct: 191 LDELLAEADILTLHLPLTPETRG---LINAEELAKMKPGAILINAA 233

Length = 324

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
           L+GK   + G G +G+  A+ L+ FG +VI    D     +A   G    +++E   E  
Sbjct: 33  LSGKTVGIIGLGRIGRAVARRLKAFGMKVIAY--DRYPKAEAEALGARYVSLDELLAESD 90

Query: 406 IFV-------TTTGCKDIIRGEHFLQMRDDAIVCNIG 435
           +          T     +I  E    M+  AI+ N  
Sbjct: 91  VVSLHLPLTPETRH---LINAERLALMKPGAILINTA 124

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 40.7 bits (96), Expect = 0.002
 Identities = 21/97 (21%), Positives = 39/97 (40%), Gaps = 11/97 (11%)

Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
           L GK   + G G +G+  A+ L+ FG +V+  +            G+ V +++E   +  
Sbjct: 138 LEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTR-KPEPEEDLGFRVVSLDELLAQSD 196

Query: 406 IFV-------TTTGCKDIIRGEHFLQMRDDAIVCNIG 435
           + V        T     +I  E    M+  A++ N  
Sbjct: 197 VVVLHLPLTPETRH---LINEEELALMKPGAVLVNTA 230

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 40.9 bits (97), Expect = 0.002
 Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 9/94 (9%)

Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP-INALQASMEGYEVTTMEEAAKEG 404
           L GK   + G G +G+  A+  R FG +V+    DP I+A +A+  G E+ +++E   E 
Sbjct: 136 LRGKTLGIVGLGRIGREVARRARAFGMKVLAY--DPYISAERAAAGGVELVSLDELLAEA 193

Query: 405 GIFVT-----TTGCKDIIRGEHFLQMRDDAIVCN 433
             F++     T   + +I  E   +M+  AI+ N
Sbjct: 194 D-FISLHTPLTPETRGLINAEELAKMKPGAILIN 226

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 14/30 (46%), Positives = 20/30 (66%)

Query: 267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
           LAGK  ++ G GD+G+  A+  + FG RVI
Sbjct: 132 LAGKTVLIVGLGDIGREIARRAKAFGMRVI 161

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 39.8 bits (94), Expect = 0.003
 Identities = 34/116 (29%), Positives = 54/116 (46%), Gaps = 7/116 (6%)

Query: 322 LHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 381
           +H  +  +KL K   ++ KY  I L GK   + G+G +G+  A+  R  G  VI  +  P
Sbjct: 115 IHRANREMKLGKW--NKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYP 172

Query: 382 INALQASMEGYEVTTMEEAAKEG---GIFVTTTGC-KDIIRGEHFLQMRDDAIVCN 433
            +  QA   G +  ++EE  K      + V  T   K +I  +    M+D AI+ N
Sbjct: 173 KDE-QAVELGVKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIIN 227

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	718
KOG1370|consensus	434		100.0
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	100.0
PLN02494	477	adenosylhomocysteinase	100.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	100.0
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	100.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	100.0
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	100.0
PF05221	268	AdoHcyase: S-adenosyl-L-homocysteine hydrolase; In	100.0
PF05221	268	AdoHcyase: S-adenosyl-L-homocysteine hydrolase; In	100.0
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	100.0
PLN02494	477	adenosylhomocysteinase	100.0
KOG1370|consensus	434		100.0
PTZ00075	476	Adenosylhomocysteinase; Provisional	100.0
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	100.0
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	100.0
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	100.0
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	99.93
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.92
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.9
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.89
KOG0068|consensus	406		99.89
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.89
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.89
PRK06487	317	glycerate dehydrogenase; Provisional	99.87
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.87
PLN02306	386	hydroxypyruvate reductase	99.87
PRK06932	314	glycerate dehydrogenase; Provisional	99.87
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.86
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.86
PRK13243	333	glyoxylate reductase; Reviewed	99.85
PLN02928	347	oxidoreductase family protein	99.85
PRK07574	385	formate dehydrogenase; Provisional	99.84
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.83
PLN03139	386	formate dehydrogenase; Provisional	99.83
KOG0069|consensus	336		99.81
PRK12480	330	D-lactate dehydrogenase; Provisional	99.77
PRK06436	303	glycerate dehydrogenase; Provisional	99.76
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.76
PRK08605	332	D-lactate dehydrogenase; Validated	99.76
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.31
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.17
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.03
KOG0067|consensus	435		98.66
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.58
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.54
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.53
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.5
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.49
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.49
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.49
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.39
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.38
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.37
PRK05225	487	ketol-acid reductoisomerase; Validated	98.36
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	98.35
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.28
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.25
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.24
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.23
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.22
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	98.2
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	98.2
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.14
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.14
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	98.13
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.11
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	98.11
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.08
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PLN02712	667	arogenate dehydrogenase	98.06
PLN02256	304	arogenate dehydrogenase	98.05
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.05
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.04
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	98.03
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.02
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.02
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.02
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.01
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.98
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	97.95
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	97.95
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	97.92
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.92
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	97.92
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.91
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.89
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	97.88
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.86
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.85
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.83
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	97.81
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.79
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.78
PRK07417	279	arogenate dehydrogenase; Reviewed	97.78
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	97.74
PLN02712	667	arogenate dehydrogenase	97.7
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	97.69
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	97.68
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.68
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.66
PRK08655	437	prephenate dehydrogenase; Provisional	97.65
PRK12831	464	putative oxidoreductase; Provisional	97.63
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.63
PRK15059	292	tartronate semialdehyde reductase; Provisional	97.62
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.62
PRK06545	359	prephenate dehydrogenase; Validated	97.6
PLN00203	519	glutamyl-tRNA reductase	97.56
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	97.53
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	97.51
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	97.49
PRK14982	340	acyl-ACP reductase; Provisional	97.48
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	97.48
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.48
PRK08507	275	prephenate dehydrogenase; Validated	97.48
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.48
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.48
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	97.47
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	97.46
PLN02688	266	pyrroline-5-carboxylate reductase	97.43
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.42
PRK07340	304	ornithine cyclodeaminase; Validated	97.39
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.38
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.37
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.36
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.34
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	97.32
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	97.29
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	97.29
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.28
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	97.28
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.27
PRK08818	370	prephenate dehydrogenase; Provisional	97.26
PLN02858	1378	fructose-bisphosphate aldolase	97.25
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	97.25
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	97.24
PRK08618	325	ornithine cyclodeaminase; Validated	97.22
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.22
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	97.21
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.2
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	97.2
PLN02858	1378	fructose-bisphosphate aldolase	97.2
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.18
PRK09414	445	glutamate dehydrogenase; Provisional	97.17
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	97.16
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	97.15
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	97.13
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.12
PLN02477	410	glutamate dehydrogenase	97.12
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.1
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	97.09
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.09
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.09
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.08
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	97.08
PRK14031	444	glutamate dehydrogenase; Provisional	97.07
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.06
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	97.05
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	97.04
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.02
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	97.02
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	97.01
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	97.0
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	96.96
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.96
PRK06141	314	ornithine cyclodeaminase; Validated	96.96
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.95
PRK07680	273	late competence protein ComER; Validated	96.95
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.95
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	96.93
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	96.91
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	96.9
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	96.89
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	96.87
PRK14030	445	glutamate dehydrogenase; Provisional	96.86
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.85
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.84
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.84
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	96.84
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.82
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.81
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	96.81
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.8
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	96.8
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.79
PLN02852	491	ferredoxin-NADP+ reductase	96.78
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	96.75
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.74
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.73
PRK06046	326	alanine dehydrogenase; Validated	96.73
PLN02527	306	aspartate carbamoyltransferase	96.7
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	96.7
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	96.66
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	96.66
KOG0409|consensus	327		96.66
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	96.63
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	96.62
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.61
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	96.6
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	96.57
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	96.56
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	96.55
PTZ00431	260	pyrroline carboxylate reductase; Provisional	96.51
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.5
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	96.47
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.46
PRK06823	315	ornithine cyclodeaminase; Validated	96.46
PRK01713	334	ornithine carbamoyltransferase; Provisional	96.45
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.36
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	96.34
PRK13304	265	L-aspartate dehydrogenase; Reviewed	96.32
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	96.32
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.31
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	96.3
KOG2380|consensus	480		96.3
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.28
PRK06407	301	ornithine cyclodeaminase; Provisional	96.28
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.28
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	96.27
PRK02102	331	ornithine carbamoyltransferase; Validated	96.27
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	96.26
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.26
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	96.26
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.25
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.23
PLN02342	348	ornithine carbamoyltransferase	96.23
PRK02255	338	putrescine carbamoyltransferase; Provisional	96.21
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.2
PRK07589	346	ornithine cyclodeaminase; Validated	96.19
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.17
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	96.16
PRK08291	330	ectoine utilization protein EutC; Validated	96.13
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	96.12
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.1
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	96.1
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.1
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.09
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	96.07
PRK13984	604	putative oxidoreductase; Provisional	96.06
PRK04284	332	ornithine carbamoyltransferase; Provisional	95.97
PRK03659	601	glutathione-regulated potassium-efflux system prot	95.96
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.93
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.92
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	95.92
PRK03562	621	glutathione-regulated potassium-efflux system prot	95.9
KOG0023|consensus	360		95.9
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	95.88
PRK11891	429	aspartate carbamoyltransferase; Provisional	95.84
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.83
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	95.82
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.74
PTZ00117	319	malate dehydrogenase; Provisional	95.74
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	95.74
PLN02586	360	probable cinnamyl alcohol dehydrogenase	95.74
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.74
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	95.74
PRK12862	763	malic enzyme; Reviewed	95.71
PRK12861	764	malic enzyme; Reviewed	95.68
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	95.67
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.65
PRK06199	379	ornithine cyclodeaminase; Validated	95.64
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	95.64
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.62
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.6
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	95.57
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	95.55
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	95.51
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	95.49
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	95.49
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	95.48
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.47
PLN02740	381	Alcohol dehydrogenase-like	95.46
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	95.45
PRK10669	558	putative cation:proton antiport protein; Provision	95.45
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.44
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	95.43
PRK12770	352	putative glutamate synthase subunit beta; Provisio	95.43
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.42
PRK12548	289	shikimate 5-dehydrogenase; Provisional	95.42
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.41
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	95.38
COG5322	351	Predicted dehydrogenase [General function predicti	95.38
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	95.37
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.37
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	95.34
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	95.33
PRK06370	463	mercuric reductase; Validated	95.32
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	95.3
PRK10637	457	cysG siroheme synthase; Provisional	95.29
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.29
PLN02178	375	cinnamyl-alcohol dehydrogenase	95.28
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	95.22
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	95.22
KOG0024|consensus	354		95.21
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	95.21
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	95.2
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.17
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	95.17
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	95.17
PRK07574	385	formate dehydrogenase; Provisional	95.17
PTZ00082	321	L-lactate dehydrogenase; Provisional	95.17
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.15
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	95.15
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.15
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.15
PRK06116	450	glutathione reductase; Validated	95.13
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.12
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	95.1
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	95.09
PRK09496	453	trkA potassium transporter peripheral membrane com	95.06
COG0281	432	SfcA Malic enzyme [Energy production and conversio	95.04
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.0
KOG4230|consensus	935		94.98
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	94.96
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	94.93
PRK10262	321	thioredoxin reductase; Provisional	94.88
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	94.84
KOG0399|consensus	2142		94.83
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	94.81
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.8
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	94.79
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	94.78
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	94.74
PRK15116	268	sulfur acceptor protein CsdL; Provisional	94.63
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.61
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	94.59
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	94.58
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	94.58
PRK04148	134	hypothetical protein; Provisional	94.56
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	94.55
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.54
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.54
PLN02827	378	Alcohol dehydrogenase-like	94.53
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.51
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.5
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	94.48
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	94.45
PRK14805	302	ornithine carbamoyltransferase; Provisional	94.4
PLN02546	558	glutathione reductase	94.36
PLN02514	357	cinnamyl-alcohol dehydrogenase	94.36
PRK08192	338	aspartate carbamoyltransferase; Provisional	94.32
KOG0022|consensus	375		94.31
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	94.31
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	94.31
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.28
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	94.18
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.16
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.09
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.05
TIGR02053	463	MerA mercuric reductase. This model represents the	94.04
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.04
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	94.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	93.98
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	93.96
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	93.95
PRK09496	453	trkA potassium transporter peripheral membrane com	93.95
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	93.93
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	93.93
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	93.92
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	93.85
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.84
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.84
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	93.81
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	93.81
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.8
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	93.78
KOG0089|consensus	309		93.78
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	93.78
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	93.77
PRK00048	257	dihydrodipicolinate reductase; Provisional	93.76
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	93.71
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	93.66
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.66
PRK08223	287	hypothetical protein; Validated	93.62
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	93.59
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	93.58
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	93.55
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	93.54
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	93.52
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	93.46
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.45
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	93.43
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	93.32
PRK06223	307	malate dehydrogenase; Reviewed	93.31
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	93.31
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	93.26
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	93.24
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.24
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	93.18
PRK05086	312	malate dehydrogenase; Provisional	93.17
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.13
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	93.12
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	93.12
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.12
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	93.08
PLN02948	577	phosphoribosylaminoimidazole carboxylase	93.08
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	93.05
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.85
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	92.83
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	92.79
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.79
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	92.73
PLN02353	473	probable UDP-glucose 6-dehydrogenase	92.72
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	92.71
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.66
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	92.65
PRK08300	302	acetaldehyde dehydrogenase; Validated	92.65
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.64
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	92.64
PRK11579	346	putative oxidoreductase; Provisional	92.62
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	92.59
PRK10083	339	putative oxidoreductase; Provisional	92.57
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	92.53
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	92.48
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	92.48
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	92.36
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	92.35
PRK13303	265	L-aspartate dehydrogenase; Provisional	92.33
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	92.31
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	92.31
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	92.28
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	92.25
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	92.21
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	92.21
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	92.19
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	92.18
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.16
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	92.13
PRK12742	237	oxidoreductase; Provisional	92.12
KOG0068|consensus	406		92.11
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	92.11
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	92.04
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	92.03
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	92.03
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	92.03
PLN03139	386	formate dehydrogenase; Provisional	92.03
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	92.0
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	91.99
PRK13529	563	malate dehydrogenase; Provisional	91.97
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.95
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	91.92
PLN03129	581	NADP-dependent malic enzyme; Provisional	91.87
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	91.85
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	91.82
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.8
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	91.79
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	91.57
PRK12814	652	putative NADPH-dependent glutamate synthase small	91.56
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	91.52
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	91.51
PTZ00325	321	malate dehydrogenase; Provisional	91.5
PLN00106	323	malate dehydrogenase	91.46
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	91.44
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	91.43
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	91.34
PRK07411	390	hypothetical protein; Validated	91.33
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	91.28
PRK04148	134	hypothetical protein; Provisional	91.23
PLN02602	350	lactate dehydrogenase	91.22
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	91.21
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	91.16
PRK14851	679	hypothetical protein; Provisional	91.04
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	91.0
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	90.89
KOG0024|consensus	354		90.89
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	90.88
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.87
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	90.85
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	90.84
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	90.69
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	90.6
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.55
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	90.54
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	90.44
PRK12480	330	D-lactate dehydrogenase; Provisional	90.4
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	90.4
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	90.39
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	90.37
PRK07877	722	hypothetical protein; Provisional	90.36
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	90.27
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	90.22
PRK05562	223	precorrin-2 dehydrogenase; Provisional	90.21
PRK06444	197	prephenate dehydrogenase; Provisional	90.19
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	90.04

>KOG1370|consensus

Probab=100.00  E-value=4.7e-142  Score=1095.70  Aligned_cols=424  Identities=79%  Similarity=1.227  Sum_probs=405.6

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      ++||++|+||||+|+.||+|||+||++|++|+++|||||+||++|+|||+|||||||||.++||||+|+|||+||||||+
T Consensus        10 v~~i~~aafGRkeieiAE~eMPglma~r~r~~~skPlkgArI~GClH~tvqTAVLiETLv~LGAev~WssCNIfSTQdha   89 (434)
T KOG1370|consen   10 VKDISQAAFGRKEIEIAENEMPGLMALRKRYGPSKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHA   89 (434)
T ss_pred             eeechhhhhchhhhhhhhhhcchHHHHHHHhccCCCCCCCeeeeeeeeehhHHHHHHHHHHhCceeeeeecceecchhHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM  160 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~  160 (718)
                      ||||++.|+|||||+|||+|||||||++++.. +++|||||+|||||+|+++|+|||+++..|+|+||||||||||||+|
T Consensus        90 AAAiA~~g~Pvfawkget~ee~~wcie~~~~~-~g~~~nmIlDdggd~t~l~h~kyp~~~~~i~GiseEttTGVH~Lykm  168 (434)
T KOG1370|consen   90 AAAIAEAGVPVFAWKGETEEEYWWCIERCLNK-DGWQPNMILDDGGDLTHLVHEKYPQMFKKIRGISEETTTGVHNLYKM  168 (434)
T ss_pred             HHHHHhcCCceeeeccccchhhhhhhhhhhcc-CCCCcceeecCCCchhhhhhhhhHHHHhhhcccchhhhhhHHHHHHH
Confidence            99999999999999999999999999999984 66677999999999999999999999999999999999996666666


Q ss_pred             HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896         161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV  240 (718)
Q Consensus       161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~  240 (718)
                      +++|                                                               +|.+|+||||||+
T Consensus       169 ~k~G---------------------------------------------------------------~L~VPAiNVNDSV  185 (434)
T KOG1370|consen  169 SKNG---------------------------------------------------------------KLKVPAINVNDSV  185 (434)
T ss_pred             HhCC---------------------------------------------------------------ceecceeeccchh
Confidence            6555                                                               5555666666677


Q ss_pred             ccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHH
Q psy7896         241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA  320 (718)
Q Consensus       241 ~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~  320 (718)
                      +|++|||.|||+||++|||+|+|++|++||.++|+|||.+|+++|                                   
T Consensus       186 TKsKFDnLygcreSl~DgikraTDvM~aGKv~Vv~GYGdVGKgCa-----------------------------------  230 (434)
T KOG1370|consen  186 TKSKFDNLYGCRESLLDGIKRATDVMIAGKVAVVCGYGDVGKGCA-----------------------------------  230 (434)
T ss_pred             hhhhccccccchhhhhhhhhhhhhheecccEEEEeccCccchhHH-----------------------------------
Confidence            788899999999999999999999999999999999999999999                                   


Q ss_pred             HHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHH
Q psy7896         321 ALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA  400 (718)
Q Consensus       321 ~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel  400 (718)
                                                                  +.|++||++|+++++||+.+++|.|+||++++|+|+
T Consensus       231 --------------------------------------------qaLkg~g~~VivTEiDPI~ALQAaMeG~~V~tm~ea  266 (434)
T KOG1370|consen  231 --------------------------------------------QALKGFGARVIVTEIDPICALQAAMEGYEVTTLEEA  266 (434)
T ss_pred             --------------------------------------------HHHhhcCcEEEEeccCchHHHHHHhhccEeeeHHHh
Confidence                                                        778899999999999999999999999999999999


Q ss_pred             hccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcc
Q psy7896         401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNS  480 (718)
Q Consensus       401 l~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~  480 (718)
                      ++++|||+++||++++|..+||.+||+++|++|+||+|.|||+.+|+...+++..++|+|                    
T Consensus       267 ~~e~difVTtTGc~dii~~~H~~~mk~d~IvCN~Ghfd~EiDv~~L~~~~~~~~~vk~Qv--------------------  326 (434)
T KOG1370|consen  267 IREVDIFVTTTGCKDIITGEHFDQMKNDAIVCNIGHFDTEIDVKWLNTPALTWENVKPQV--------------------  326 (434)
T ss_pred             hhcCCEEEEccCCcchhhHHHHHhCcCCcEEeccccccceeehhhccCCcceeeeccccc--------------------
Confidence            999999999999999999999999999999999999999999999999989999999999                    


Q ss_pred             cccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHH
Q psy7896         481 LFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL  560 (718)
Q Consensus       481 ~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~  560 (718)
                                                                                                      
T Consensus       327 --------------------------------------------------------------------------------  326 (434)
T KOG1370|consen  327 --------------------------------------------------------------------------------  326 (434)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCC
Q psy7896         561 ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHP  640 (718)
Q Consensus       561 ~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~  640 (718)
                                                                         |.++|++|-+||+...|+|+||+|++|||
T Consensus       327 ---------------------------------------------------D~~~~~~gr~iIlLAeGRLvNL~Catghp  355 (434)
T KOG1370|consen  327 ---------------------------------------------------DRYILPNGKHIILLAEGRLVNLGCATGHP  355 (434)
T ss_pred             ---------------------------------------------------ceeeccCCcEEEEEecCceeecccccCCC
Confidence                                                               55678999999999999999999999999


Q ss_pred             cceechhHHhHHHHHHHHHhcc-CCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCCCCC
Q psy7896         641 SFVMSNSFTNQVLAQIELWTKH-SQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY  718 (718)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (718)
                      |||||+|||||||||||||+++ ++|+.|||.|||+|||+||.+||.+||++|||||++|++|||++.+||||||||||
T Consensus       356 SFvmS~sftnQvlAqIeLwt~p~~kY~~~V~~LPKklDE~VA~lHL~kl~~kLTkLt~~Qa~YlG~~~~gPfKpdhYRY  434 (434)
T KOG1370|consen  356 SFVMSNSFTNQVLAQIELWTAPEGKYKVGVYVLPKKLDEYVASLHLGKLGAKLTKLTDKQAKYLGLSKDGPFKPDHYRY  434 (434)
T ss_pred             ceEEecchHHHHHHHHHHhcCCCCccccceEecchhhHHHHHHhhhhhhchhhhhhhHHHHHhcCCCcCCCCCCCCCCC
Confidence            9999999999999999999999 79999999999999999999999999999999999999999999999999999999

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=100.00  E-value=6.7e-132  Score=1042.44  Aligned_cols=413  Identities=62%  Similarity=0.923  Sum_probs=402.2

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      ++||+||+|||++|+||++|||+||++|++|+.+|||||.||++|+|||.|||+|++||+++||||+|++||||||||||
T Consensus         7 v~Disla~~Gr~~i~wAe~~MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplSTqD~v   86 (420)
T COG0499           7 VKDISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLSTQDDV   86 (420)
T ss_pred             ecchhhhhhhhHHHHHHHhhChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCcccHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC-CCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHH
Q psy7896          81 AAAIAAR-GVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYK  159 (718)
Q Consensus        81 aaal~~~-gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~  159 (718)
                      ||||++. |||||||||||.+|||||++++|+|   +| |||+|||||++.++|+++|++++.|+|++||||||      
T Consensus        87 aaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~~---~p-~iiiDDG~D~~~~vh~~~~~l~~~i~G~tEETTTG------  156 (420)
T COG0499          87 AAALAAKEGIPVFAWKGETLEEYYEAIDQVLDW---EP-NIIIDDGGDLTKLVHLERPELLDAIKGGTEETTTG------  156 (420)
T ss_pred             HHHHhhccCceEEEEcCCCHHHHHHHHHHHhCc---CC-CEEEecCcceeeeeecccHHHHHHhcCCCcccchH------
Confidence            9999766 9999999999999999999999976   45 99999999999999999999999999999999999      


Q ss_pred             HHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCC
Q psy7896         160 MFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDS  239 (718)
Q Consensus       160 ~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds  239 (718)
                                                                               |+|||+|.+.|.|+||+||||||
T Consensus       157 ---------------------------------------------------------V~RL~am~~~G~L~fPai~VNDs  179 (420)
T COG0499         157 ---------------------------------------------------------VHRLRAMEKDGVLKFPAINVNDS  179 (420)
T ss_pred             ---------------------------------------------------------HHHHHHHHhcCCcccceEeecch
Confidence                                                                     77888888889999999999999


Q ss_pred             cccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHH
Q psy7896         240 VTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV  319 (718)
Q Consensus       240 ~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i  319 (718)
                      .+|++|||+|||+||++|||+|+||++++||+++|+||||||+++|                                  
T Consensus       180 ~tK~~FDNrYGtgqS~~DgI~RaTn~liaGK~vVV~GYG~vGrG~A----------------------------------  225 (420)
T COG0499         180 VTKSLFDNRYGTGQSLLDGILRATNVLLAGKNVVVAGYGWVGRGIA----------------------------------  225 (420)
T ss_pred             hhhcccccccccchhHHHHHHhhhceeecCceEEEecccccchHHH----------------------------------
Confidence            9999999999999999999999999999999999999999999999                                  


Q ss_pred             HHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHH
Q psy7896         320 AALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEE  399 (718)
Q Consensus       320 ~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Lee  399 (718)
                                                                   ++|+++||+|+|++.||+++++|.|+||++++++|
T Consensus       226 ---------------------------------------------~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~  260 (420)
T COG0499         226 ---------------------------------------------MRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEE  260 (420)
T ss_pred             ---------------------------------------------HHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHH
Confidence                                                         89999999999999999999999999999999999


Q ss_pred             HhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhc
Q psy7896         400 AAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCN  479 (718)
Q Consensus       400 ll~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~  479 (718)
                      +.+.+|||+++||++++|+.+||..||+|+|++|+||||+|||+++|++.++++.+++|+|                   
T Consensus       261 Aa~~gDifiT~TGnkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr~~V-------------------  321 (420)
T COG0499         261 AAKTGDIFVTATGNKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVRPQV-------------------  321 (420)
T ss_pred             hhhcCCEEEEccCCcCccCHHHHHhccCCeEEecccccceeccHHHHHHhhhhHhccccCc-------------------
Confidence            9999999999999999999999999999999999999999999999998888999999999                   


Q ss_pred             ccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHH
Q psy7896         480 SLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETL  559 (718)
Q Consensus       480 ~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l  559 (718)
                                                                                                      
T Consensus       322 --------------------------------------------------------------------------------  321 (420)
T COG0499         322 --------------------------------------------------------------------------------  321 (420)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCC
Q psy7896         560 LELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGH  639 (718)
Q Consensus       560 ~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~  639 (718)
                                                                          +.+.++||-.+++...|+|+||+||+||
T Consensus       322 ----------------------------------------------------~ey~l~~Gkri~llaeGRLvNLa~a~GH  349 (420)
T COG0499         322 ----------------------------------------------------DEYELPDGKRIILLAEGRLVNLAAATGH  349 (420)
T ss_pred             ----------------------------------------------------eEEEcCCCCEEEEEecceeeeeccCCCC
Confidence                                                                4556799999999999999999999999


Q ss_pred             CcceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q psy7896         640 PSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP  710 (718)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (718)
                      ||||||+||+||+|||++||+++++|+++||+||++||++||++||++||++||+||++|++||++|.+||
T Consensus       350 Ps~VMd~SFanQaLa~~~L~~n~~~~~~~Vy~lP~~lD~~VArl~L~~~G~~i~~Lt~eQ~~Yl~~w~~Gt  420 (420)
T COG0499         350 PSEVMDMSFANQALAQIYLVKNHGKLEPGVYRLPKELDEEVARLKLEAMGIELDELTEEQAEYLGSWEEGT  420 (420)
T ss_pred             cHHHhhhhHHHHHHHHHHHHhcccccCCceeeCcHHHHHHHHHHHHHHhCceeeecCHHHHHHhCCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998

>PLN02494 adenosylhomocysteinase

Probab=100.00  E-value=9.8e-122  Score=1012.44  Aligned_cols=461  Identities=60%  Similarity=0.959  Sum_probs=415.9

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||++|+++|+||++|||+|+++|++|.++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||||||
T Consensus         8 v~d~~la~~G~~~i~wa~~~mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~sTqd~v   87 (477)
T PLN02494          8 VKDMSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHA   87 (477)
T ss_pred             ecchhhhHHHHHHHHHHHHhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCccchHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhh-hcccCCCcccchh----HH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFL-SEIRGISEETTTG----VH  155 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~-~~~~g~~eet~~g----~~  155 (718)
                      ||||++.||+||||+|||.+|||||++++|+|+|+.+|++|+||||||+.++|++..-.. ....|..++..++    .+
T Consensus        88 aaal~~~gi~vfa~~g~~~~ey~~~~~~~l~~~~~~~p~~i~DDG~dl~~~~h~~~~~e~~~~~~~~~~~~~~~~~~~~~  167 (477)
T PLN02494         88 AAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDATLLIHEGVKAEEEFEKDGTLPDPTSTDNAEFK  167 (477)
T ss_pred             HHHHHhCCceEEEecCCCHHHHHHHHHHHHcCCCCCCCCEEEeCCchHHHHHHhchhhhhcccccccCCCCCCcccHHHH
Confidence            999999999999999999999999999999998787789999999999999997521000 0012333333332    24


Q ss_pred             hHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEE
Q psy7896         156 NLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN  235 (718)
Q Consensus       156 ~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~  235 (718)
                      .|+++++...                           ...+++|+.+.++++|++|+|+||++||++|.++|+|+|||++
T Consensus       168 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~i~G~~EeTttGv~Rl~~m~~~g~L~~Pvi~  220 (477)
T PLN02494        168 IVLTIIKDGL---------------------------KVDPKKYHKMKERLVGVSEETTTGVKRLYQMQKNGTLLFPAIN  220 (477)
T ss_pred             HHHHHHHHHH---------------------------hhCcchhhHHHHhhcCCcccccHHHHHHHHHHHCCCCCCCEEE
Confidence            5555554321                           1234678999999999999999999999999999999999999


Q ss_pred             ecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhh
Q psy7896         236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL  315 (718)
Q Consensus       236 v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L  315 (718)
                      ||||++|++|||+|||+||++|+|+|+|+++                                                 
T Consensus       221 vnds~~K~~fDn~yGtgqS~~d~i~r~t~i~-------------------------------------------------  251 (477)
T PLN02494        221 VNDSVTKSKFDNLYGCRHSLPDGLMRATDVM-------------------------------------------------  251 (477)
T ss_pred             EcChhhhhhhhccccccccHHHHHHHhcCCc-------------------------------------------------
Confidence            9999999999999999999999999987744                                                 


Q ss_pred             hHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec
Q psy7896         316 DEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT  395 (718)
Q Consensus       316 ~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~  395 (718)
                                                    +.||+|+|+|+|.||+.+|+++++|||+|++++++|.+..++.++|+.++
T Consensus       252 ------------------------------LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv  301 (477)
T PLN02494        252 ------------------------------IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL  301 (477)
T ss_pred             ------------------------------cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec
Confidence                                          35677777777778888889999999999999999988778888999988


Q ss_pred             CHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccc-cceeeecCCcccCccccchhhHHH
Q psy7896         396 TMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA-VEKVNVKPQVSPTSRTKHLTTEAL  474 (718)
Q Consensus       396 ~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~-l~~~~v~P~V~v~s~e~~~~~eal  474 (718)
                      +++++++.+|+|+++++++++|+.++|+.||+|++|+|+||++.|||.++|.+.. +.+.+++|++              
T Consensus       302 ~leEal~~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~~~v--------------  367 (477)
T PLN02494        302 TLEDVVSEADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIKPQT--------------  367 (477)
T ss_pred             cHHHHHhhCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccCCCc--------------
Confidence            9999999999999999999999999999999999999999998899999998864 7777788877              


Q ss_pred             HhhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHH
Q psy7896         475 LATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAV  554 (718)
Q Consensus       475 ~n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~  554 (718)
                                                                                                      
T Consensus       368 --------------------------------------------------------------------------------  367 (477)
T PLN02494        368 --------------------------------------------------------------------------------  367 (477)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC-CCeEEEecCCccccc
Q psy7896         555 LIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN-GNHIILLAEGRLVNL  633 (718)
Q Consensus       555 L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~-~~~~i~ddggdl~~~  633 (718)
                                                                               +.+.++| |..+++...|+|||+
T Consensus       368 ---------------------------------------------------------d~y~~~d~g~~i~ll~eGrlvNl  390 (477)
T PLN02494        368 ---------------------------------------------------------DRWVFPDTGSGIIVLAEGRLMNL  390 (477)
T ss_pred             ---------------------------------------------------------eEEEcCCCCCEEEEEeCCccccc
Confidence                                                                     3334577 999999999999999


Q ss_pred             cccCCCCcceechhHHhHHHHHHHHHhc--cCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCC
Q psy7896         634 GCAMGHPSFVMSNSFTNQVLAQIELWTK--HSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPY  711 (718)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (718)
                      +|++|||++|||+||+||+|++++||++  +.+|+++||.||+++|++||++||++||++||+||++|++||+++.+|||
T Consensus       391 ~~~~GhP~evmd~sFa~Q~la~~~l~~~~~~~~~~~~v~~lP~~~D~~vA~~~L~~~g~~~~~lt~~Q~~yl~~~~~gp~  470 (477)
T PLN02494        391 GCATGHPSFVMSCSFTNQVIAQLELWNEKKSGKYEKKVYVLPKHLDEKVAALHLGKLGAKLTKLSKDQADYINVPVEGPY  470 (477)
T ss_pred             cCCCCCCcceeeHHHHHHHHHHHHHHhcccccccCCCcEECCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCCcCCCC
Confidence            9999999999999999999999999998  78999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy7896         712 KPDHYRY  718 (718)
Q Consensus       712 ~~~~~~~  718 (718)
                      ||+||||
T Consensus       471 k~~~y~y  477 (477)
T PLN02494        471 KPAHYRY  477 (477)
T ss_pred             CccccCC
Confidence            9999999

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=100.00  E-value=1.1e-120  Score=1006.29  Aligned_cols=461  Identities=67%  Similarity=1.055  Sum_probs=416.0

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||++||++|+||++|||+||++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||||||
T Consensus         7 v~d~~la~~G~~~i~wa~~~mP~L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqD~~   86 (476)
T PTZ00075          7 VKDISLAEFGRKEIELAENEMPGLMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCSCNIFSTQDHA   86 (476)
T ss_pred             eccchhhhHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCCccccHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCC-CeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhCh-hhhhcccCCCcccchh----H
Q psy7896          81 AAAIAARG-VAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYP-QFLSEIRGISEETTTG----V  154 (718)
Q Consensus        81 aaal~~~g-v~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~-~~~~~~~g~~eet~~g----~  154 (718)
                      ||||++.| |+||||||||.+|||||++++|+|+++++||+|+||||||+.++|++.. +...+-.|...+...+    .
T Consensus        87 aaal~~~g~i~vfa~~g~t~eey~~~~~~~l~~~~~~~p~~i~DdG~dl~~~~~~g~~~e~~~~~~~~~~~~~~~~~~~~  166 (476)
T PTZ00075         87 AAAIAKAGSVPVFAWKGETLEEYWWCTEQALKWPNGDGPNLIVDDGGDATLLVHEGVKAEKLYEEKGILPDPLDPSNEDE  166 (476)
T ss_pred             HHHHHhcCCeEEEEecCCCHHHHHHHHHHHHhccCCCCCCEEEECCcHHHHHHHhhhHhhhccccccccCCCcccccHHH
Confidence            99999999 9999999999999999999999998887779999999999999994321 0000111222222211    2


Q ss_pred             HhHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEE
Q psy7896         155 HNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAI  234 (718)
Q Consensus       155 ~~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~  234 (718)
                      +-|+++++.                           .+...++.|+.+.++++|++|+|||||+|||+|+++|+|+|||+
T Consensus       167 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~m~~~g~L~iPV~  219 (476)
T PTZ00075        167 KCLLTVLKK---------------------------LLTKNPDKWTNLVKKIVGVSEETTTGVHRLYKMLKKGELLFPAI  219 (476)
T ss_pred             HHHHHHHhh---------------------------hhhcCchhhhhhhhccEeeeecchHHHHHHHHHHHCCCCCceEE
Confidence            223333331                           22233467899999999999999999999999999999999999


Q ss_pred             EecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhh
Q psy7896         235 NVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE  314 (718)
Q Consensus       235 ~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~  314 (718)
                      ||||+.+|+.|||.|||++|++|++.|.++                                                  
T Consensus       220 nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~--------------------------------------------------  249 (476)
T PTZ00075        220 NVNDSVTKSKFDNIYGCRHSLIDGIFRATD--------------------------------------------------  249 (476)
T ss_pred             EeCCcchHHHHHHHHHHHHHHHHHHHHhcC--------------------------------------------------
Confidence            999999999999999999999999998532                                                  


Q ss_pred             hhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee
Q psy7896         315 LDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV  394 (718)
Q Consensus       315 L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v  394 (718)
                                                   ..+.||+|+|+|+|+||+.+|++|++|||+|++++++|.+..++.++|+.+
T Consensus       250 -----------------------------~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~  300 (476)
T PTZ00075        250 -----------------------------VMIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV  300 (476)
T ss_pred             -----------------------------CCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee
Confidence                                         246789999999999999999999999999999999998887777889999


Q ss_pred             cCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccc-cceeeecCCcccCccccchhhHH
Q psy7896         395 TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA-VEKVNVKPQVSPTSRTKHLTTEA  473 (718)
Q Consensus       395 ~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~-l~~~~v~P~V~v~s~e~~~~~ea  473 (718)
                      ++++++++.+|||+++++++++|+.++|++||+|++|+|+||++.|+++++|.... +++.+++|++             
T Consensus       301 ~~leell~~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~Ei~i~aL~~~~~vdv~evep~v-------------  367 (476)
T PTZ00075        301 VTLEDVVETADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDNEIQVAELEAYPGIEIVEIKPQV-------------  367 (476)
T ss_pred             ccHHHHHhcCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCchHHhHHHHHhcCCceeecccCCC-------------
Confidence            99999999999999999999999999999999999999999999999999998754 7888888887             


Q ss_pred             HHhhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHH
Q psy7896         474 LLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTA  553 (718)
Q Consensus       474 l~n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta  553 (718)
                                                                                                      
T Consensus       368 --------------------------------------------------------------------------------  367 (476)
T PTZ00075        368 --------------------------------------------------------------------------------  367 (476)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccc
Q psy7896         554 VLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNL  633 (718)
Q Consensus       554 ~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~  633 (718)
                                                                                +.++++||..|++...|+|||+
T Consensus       368 ----------------------------------------------------------~~~~~~~g~~i~llaeGrlvNl  389 (476)
T PTZ00075        368 ----------------------------------------------------------DRYTFPDGKGIILLAEGRLVNL  389 (476)
T ss_pred             ----------------------------------------------------------CeEEeCCCCEEEEEeCCCcccc
Confidence                                                                      3456789999999999999999


Q ss_pred             cccCCCCcceechhHHhHHHHHHHHHhccC--CCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCC
Q psy7896         634 GCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPY  711 (718)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (718)
                      +|++|||+||||+||+||+|||++||+++.  +|+++||.||++||++||++||++||++||+||++|++|||++.+|||
T Consensus       390 ~~~~GhP~~vMd~sfa~Q~la~~~l~~~~~~~~~~~~v~~lp~~~d~~vA~~~L~~~g~~~~~lt~~q~~yl~~~~~gp~  469 (476)
T PTZ00075        390 GCATGHPSFVMSNSFTNQVLAQIELWENRDTGKYPNGVYKLPKELDEKVARLHLKKLGAKLTKLTDKQAEYIGVPVDGPY  469 (476)
T ss_pred             CCCCCCCeeEeeHHHHHHHHHHHHHHhccCccccCCceEECCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCCCCCCC
Confidence            999999999999999999999999999988  899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy7896         712 KPDHYRY  718 (718)
Q Consensus       712 ~~~~~~~  718 (718)
                      ||+||||
T Consensus       470 k~~~y~y  476 (476)
T PTZ00075        470 KSDHYRY  476 (476)
T ss_pred             CccccCC
Confidence            9999999

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=100.00  E-value=1.3e-107  Score=898.12  Aligned_cols=416  Identities=67%  Similarity=1.033  Sum_probs=393.7

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||++|+++|+||+++||+|+++|++|+++|||+|+||++|+|||+||++|++||+++||||+|++||||||||||
T Consensus        10 ~~d~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~Stqd~v   89 (425)
T PRK05476         10 VADISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFSTQDDV   89 (425)
T ss_pred             ecchhhhhhhhHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCcccCHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM  160 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~  160 (718)
                      ||+|++.||+||||+|+|.+|||||++++|  ++++| ++|+||||||+.++|+++|+++++++|++||||||       
T Consensus        90 aaaL~~~gi~v~a~~~~~~~ey~~~~~~~l--~~~~p-~iiiDdGgdl~~~~~~~~~~~~~~i~G~~EeTttG-------  159 (425)
T PRK05476         90 AAALAAAGIPVFAWKGETLEEYWECIERAL--DGHGP-NMILDDGGDLTLLVHTERPELLANIKGVTEETTTG-------  159 (425)
T ss_pred             HHHHHHCCceEEecCCCCHHHHHHHHHHHh--cCCCC-CEEEecccHHHHHHHHHhhHhHhccEeeeecchHH-------
Confidence            999999999999999999999999999998  34455 99999999999999999999999999998888888       


Q ss_pred             HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896         161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV  240 (718)
Q Consensus       161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~  240 (718)
                                                                              ++||++|.++|+|+|||||||||.
T Consensus       160 --------------------------------------------------------v~rl~~~~~~~~l~~Pv~~vn~s~  183 (425)
T PRK05476        160 --------------------------------------------------------VHRLYAMAKDGALKFPAINVNDSV  183 (425)
T ss_pred             --------------------------------------------------------HHHHHHHHHcCCCCCCEEecCCcc
Confidence                                                                    788888888999999999999999


Q ss_pred             ccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHH
Q psy7896         241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA  320 (718)
Q Consensus       241 ~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~  320 (718)
                      +|++|||+|||+||+++++.++++.                                                       
T Consensus       184 ~K~~~dn~~gt~~s~~~ai~rat~~-------------------------------------------------------  208 (425)
T PRK05476        184 TKSKFDNRYGTGESLLDGIKRATNV-------------------------------------------------------  208 (425)
T ss_pred             cCccccccHHHHhhhHHHHHHhccC-------------------------------------------------------
Confidence            9999999999999999999986542                                                       


Q ss_pred             HHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHH
Q psy7896         321 ALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA  400 (718)
Q Consensus       321 ~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel  400 (718)
                                              .+.|++|+|+|+|.||+.+|++|+++|++|+++|++|.+..++.++|+.+.+++++
T Consensus       209 ------------------------~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~ea  264 (425)
T PRK05476        209 ------------------------LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRVMTMEEA  264 (425)
T ss_pred             ------------------------CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHH
Confidence                                    24577888888888888888999999999999999999888888889998899999


Q ss_pred             hccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcc
Q psy7896         401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNS  480 (718)
Q Consensus       401 l~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~  480 (718)
                      ++.+|+|++++|++++|+.++|..||+|++++|+||++.|+|+++|.+.+.++.+++|+|                    
T Consensus       265 l~~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~~~~~~~~v~~~v--------------------  324 (425)
T PRK05476        265 AELGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDVAALEELAVKWREIKPQV--------------------  324 (425)
T ss_pred             HhCCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhhcCcceeecCCCc--------------------
Confidence            999999999999999999999999999999999999999999999998767788889988                    


Q ss_pred             cccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHH
Q psy7896         481 LFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL  560 (718)
Q Consensus       481 ~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~  560 (718)
                                                                                                      
T Consensus       325 --------------------------------------------------------------------------------  324 (425)
T PRK05476        325 --------------------------------------------------------------------------------  324 (425)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCC
Q psy7896         561 ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHP  640 (718)
Q Consensus       561 ~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~  640 (718)
                                                                         +.+.++||-.+++...|+|+|++|++|||
T Consensus       325 ---------------------------------------------------~~y~~~~g~~i~lLa~GrlvNl~~~~ghp  353 (425)
T PRK05476        325 ---------------------------------------------------DEYTLPDGKRIILLAEGRLVNLGAATGHP  353 (425)
T ss_pred             ---------------------------------------------------eEEEeCCCCEEEEEeCCcccccCCCCCCc
Confidence                                                               44567899999999999999999999999


Q ss_pred             cceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCC
Q psy7896         641 SFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYK  712 (718)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  712 (718)
                      ++|||+||++|+|++++||+++++|++|||.||+++|++||++||++||++||+||++|++||++|.+||||
T Consensus       354 ~~vmd~sfa~q~l~~~~l~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~~  425 (425)
T PRK05476        354 SEVMDMSFANQALAQIELFTNRGKLEPGVYVLPKELDEEVARLKLKALGVKLDELTEEQAEYIGVWVEGPFK  425 (425)
T ss_pred             ceeeCHHHHHHHHHHHHHHhccCcCCCCeEECCHHHHHHHHHHHHHHcCCccccCCHHHHHHcCCCcCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998

>TIGR00936 ahcY adenosylhomocysteinase

Probab=100.00  E-value=2.8e-107  Score=891.07  Aligned_cols=406  Identities=59%  Similarity=0.892  Sum_probs=380.9

Q ss_pred             HhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHHHHHHHhC
Q psy7896           8 EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAAR   87 (718)
Q Consensus         8 ~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~aaal~~~   87 (718)
                      ++|+++|+||+++||+|+++|++|.++|||+|+||++|+|||+|||+|++||+++||+|+||+||||||||||||+|++.
T Consensus         1 ~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~   80 (406)
T TIGR00936         1 AEGRKKIEWAEREMPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKA   80 (406)
T ss_pred             CccHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHHHhhcccC
Q psy7896          88 GVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLG  167 (718)
Q Consensus        88 gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~~~~~~l~  167 (718)
                      ||+||||+|+|++|||||++++|+   .+| ++|+||||||+.++|+++|+++++++|++||||||              
T Consensus        81 gi~v~a~~~~~~~ey~~~~~~~l~---~~p-~~iiDdGgdl~~~~~~~~~~~~~~~~G~~EeTttG--------------  142 (406)
T TIGR00936        81 GIPVFAWRGETNEEYYWAIEQVLD---HEP-NIIIDDGADLIFLLHTERPELLEKIIGGSEETTTG--------------  142 (406)
T ss_pred             CceEEEecCCCHHHHHHHHHHHhc---CCC-CEEEecccHHHHHHHHhhhhhhhccEEEeecchHH--------------
Confidence            999999999999999999999995   466 99999999999999999999999998888888888              


Q ss_pred             CCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCcccccccc
Q psy7896         168 VPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDN  247 (718)
Q Consensus       168 ~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~~K~~fd~  247 (718)
                                                                       ++||++|.++|+|+|||||||||++|++|||
T Consensus       143 -------------------------------------------------v~rl~~~~~~~~L~~Pvi~vnds~~K~~fDn  173 (406)
T TIGR00936       143 -------------------------------------------------VIRLRAMEAEGVLKFPAINVNDAYTKSLFDN  173 (406)
T ss_pred             -------------------------------------------------HHHHHHHHHcCCCCCcEEEecchhhchhhhc
Confidence                                                             7888888889999999999999999999999


Q ss_pred             cccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896         248 LYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHL  327 (718)
Q Consensus       248 ~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~l  327 (718)
                      +|||+||+++++.|+++++                                                             
T Consensus       174 ~yg~g~s~~~~i~r~t~~~-------------------------------------------------------------  192 (406)
T TIGR00936       174 RYGTGQSTIDGILRATNLL-------------------------------------------------------------  192 (406)
T ss_pred             ccccchhHHHHHHHhcCCC-------------------------------------------------------------
Confidence            9999999999999976643                                                             


Q ss_pred             cccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEE
Q psy7896         328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIF  407 (718)
Q Consensus       328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiI  407 (718)
                                        +.|++|+|+|+|.||+.+|++++++|++|+++|+||.+..++.++|+.+.+++++++.+|+|
T Consensus       193 ------------------l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVV  254 (406)
T TIGR00936       193 ------------------IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIF  254 (406)
T ss_pred             ------------------CCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEE
Confidence                              35667777777777777779999999999999999988888888999999999999999999


Q ss_pred             EEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccccccc
Q psy7896         408 VTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLV  487 (718)
Q Consensus       408 i~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv  487 (718)
                      ++++|++++|+.++|..||+|++++|+||++.|||.++|.+.+.++.+++|++                           
T Consensus       255 ItaTG~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v---------------------------  307 (406)
T TIGR00936       255 ITATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQV---------------------------  307 (406)
T ss_pred             EECCCCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccce---------------------------
Confidence            99999999999999999999999999999998999999988666666777777                           


Q ss_pred             ccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEE
Q psy7896         488 NTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQ  567 (718)
Q Consensus       488 ~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~  567 (718)
                                                                                                      
T Consensus       308 --------------------------------------------------------------------------------  307 (406)
T TIGR00936       308 --------------------------------------------------------------------------------  307 (406)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcceechh
Q psy7896         568 WSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNS  647 (718)
Q Consensus       568 ~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~~~~~  647 (718)
                                                                  +.+.++||..+++.+.|+|+|++|++|||++|||+|
T Consensus       308 --------------------------------------------~~~~~~~g~~i~ll~~GrlvNl~~~~ghp~~vmd~s  343 (406)
T TIGR00936       308 --------------------------------------------DEYILKDGRRIYLLAEGRLVNLAAAEGHPSEVMDMS  343 (406)
T ss_pred             --------------------------------------------EEEEeCCCCEEEEEeCCceecccCCCCCcceeeCHH
Confidence                                                        334568899999999999999999999999999999


Q ss_pred             HHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q psy7896         648 FTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP  710 (718)
Q Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (718)
                      |++|+|++++||+++.+|++|||.||+++|++||++||++||++||+||++|++||++|.+||
T Consensus       344 fa~q~la~~~l~~~~~~~~~~v~~lp~~~d~~va~~~l~~~g~~~~~lt~~q~~y~~~~~~g~  406 (406)
T TIGR00936       344 FANQALAAEYLWKNHDKLEPGVYRLPKELDEMVARLKLEAMGIEIDELTEEQKEYLGSWEEGT  406 (406)
T ss_pred             HHHHHHHHHHHHhcccccCCCeEECCHHHHHHHHHHHHHHcCceeccCCHHHHHHhcCCcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999998

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=100.00  E-value=1.4e-100  Score=840.42  Aligned_cols=413  Identities=80%  Similarity=1.229  Sum_probs=374.3

Q ss_pred             ccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHHHHH
Q psy7896           4 IKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAA   83 (718)
Q Consensus         4 ~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~aaa   83 (718)
                      ++||++|+++|+||++|||+|+++|++|.++|||+|+||++|+|||+|||+|++||+++||||+||+||||||||||||+
T Consensus         1 ~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~   80 (413)
T cd00401           1 ISLAAFGRKEIEIAENEMPGLMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAA   80 (413)
T ss_pred             CCchhhhhHHHHHHHHHCHHHHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHHHhh
Q psy7896          84 IAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKE  163 (718)
Q Consensus        84 l~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~~~~  163 (718)
                      |++.||+||||+|+|.+|||||++++|+|++++| ++|+||||||+.++|+++|+++++++|++||||||          
T Consensus        81 l~~~gi~v~a~~~~~~~~y~~~~~~~l~~~~~~p-~~i~DdGg~~~~~~~~~~~~~~~~~~G~~EeTttG----------  149 (413)
T cd00401          81 IAAAGIPVFAWKGETLEEYWWCIEQALKFPDGEP-NMILDDGGDLTLLIHKKHPELLPGIRGISEETTTG----------  149 (413)
T ss_pred             HHhcCceEEEEcCCCHHHHHHHHHHHHhccCCCC-cEEEecchHHHHHHHhhhhhhhhccEEEeecchHH----------
Confidence            9999999999999999999999999999988876 99999999999999999999999888888888888          


Q ss_pred             cccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCcccc
Q psy7896         164 NKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKS  243 (718)
Q Consensus       164 ~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~~K~  243 (718)
                                                                           ++||++|.++|+|+|||++||||++|+
T Consensus       150 -----------------------------------------------------v~rl~~~~~~~~l~~Pv~~vnds~~K~  176 (413)
T cd00401         150 -----------------------------------------------------VHRLYKMEKEGKLKFPAINVNDSVTKS  176 (413)
T ss_pred             -----------------------------------------------------HHHHHHHHHCCCCCCCEEEecchhhcc
Confidence                                                                 789999988999999999999999999


Q ss_pred             cccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHH
Q psy7896         244 KFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH  323 (718)
Q Consensus       244 ~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~  323 (718)
                      +|||+|||+||+++++.|.++..+                                                        
T Consensus       177 ~~dn~~g~g~s~~~~i~r~t~~~l--------------------------------------------------------  200 (413)
T cd00401         177 KFDNLYGCRESLIDGIKRATDVMI--------------------------------------------------------  200 (413)
T ss_pred             cccccchhchhhHHHHHHhcCCCC--------------------------------------------------------
Confidence            999999999999999999776444                                                        


Q ss_pred             HHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhcc
Q psy7896         324 LEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKE  403 (718)
Q Consensus       324 l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~  403 (718)
                                             .|++|+|+|+|.||+.+|+.++++|++|+++|++|.+...+.+.|+.+++++++++.
T Consensus       201 -----------------------~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~  257 (413)
T cd00401         201 -----------------------AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKE  257 (413)
T ss_pred             -----------------------CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcC
Confidence                                   455666666666666667899999999999999998887888889988888999999


Q ss_pred             CcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccc
Q psy7896         404 GGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFK  483 (718)
Q Consensus       404 aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~  483 (718)
                      +|+|+.++|+.++|+.++++.||+|++++|+|+++.++|.+.|....++....++++                       
T Consensus       258 aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~~-----------------------  314 (413)
T cd00401         258 GDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQV-----------------------  314 (413)
T ss_pred             CCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCCc-----------------------
Confidence            999999999999999999999999999999999988999988776433333333332                       


Q ss_pred             ccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcC
Q psy7896         484 YSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELG  563 (718)
Q Consensus       484 ~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~G  563 (718)
                                                                                                      
T Consensus       315 --------------------------------------------------------------------------------  314 (413)
T cd00401         315 --------------------------------------------------------------------------------  314 (413)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcce
Q psy7896         564 AEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFV  643 (718)
Q Consensus       564 A~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~  643 (718)
                                                                      ....++||.-+.+-..|.++|+.|+.|||++|
T Consensus       315 ------------------------------------------------~~~~~~~g~aI~LLa~Grlvnl~~~~gH~~~v  346 (413)
T cd00401         315 ------------------------------------------------DRYELPDGRRIILLAEGRLVNLGCATGHPSFV  346 (413)
T ss_pred             ------------------------------------------------ceEEcCCcchhhhhhCcCCCCCcccCCCccce
Confidence                                                            11123444445555678999999999999999


Q ss_pred             echhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCC
Q psy7896         644 MSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGP  710 (718)
Q Consensus       644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  710 (718)
                      ||+||++|+++++++|+++++++++||.+|+++|++||++||++||++||+||++|++||++|.+||
T Consensus       347 md~sf~~q~l~a~~l~~~~~~~~~kV~~~p~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~  413 (413)
T cd00401         347 MSNSFTNQVLAQIELWTNRDKYEVGVYFLPKKLDEEVARLHLGKLGVKLTKLTDKQAEYLGVPVEGP  413 (413)
T ss_pred             echhHHHHHHHHHHHHhcCCcCCCcEEECCHHHHHHHHHHHHHhcCceeccCCHHHHHHhcCCcCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999998

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3

Probab=100.00  E-value=9.4e-92  Score=722.09  Aligned_cols=183  Identities=62%  Similarity=0.926  Sum_probs=161.1

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||++|+++|+||+++||+||++|++|+++|||+|+||++|||||+|||+|++||+++||||+|||||||||||||
T Consensus         5 VkDi~LA~~G~~~i~wa~~~MPvL~~lr~~~~~~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQDdv   84 (268)
T PF05221_consen    5 VKDISLAESGRKKIEWAERHMPVLMALRERFEAEKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQDDV   84 (268)
T ss_dssp             ES-GGGHHHHHHHHHHHHHT-HHHHHHHHHHTTT-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT--HHH
T ss_pred             ccCccHhHHHHHHHHHHHhhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCcccchHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM  160 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~  160 (718)
                      ||||++.||+||||+|+|.+||||||+++|.|.++.+|++|+||||||++++|++||+++++++|+|||||||       
T Consensus        85 aAAL~~~Gi~V~A~~get~eey~~~i~~~L~~~~~~~P~~iiDDG~Dl~~~lh~~~~~l~~~i~G~sEETTTG-------  157 (268)
T PF05221_consen   85 AAALAEEGIPVFAWKGETDEEYWWCIEKALSWEDDHGPNLIIDDGGDLVNLLHTKRPELLSGIIGGSEETTTG-------  157 (268)
T ss_dssp             HHHHHHTTEEEEE-TT--HHHHHHHHHHCHSESTTCE-SEEEESSSHHHHHHHHHHHHHHHT-SEEEE-SHHH-------
T ss_pred             HHHhccCCceEEEeCCCCHHHHHHHHHHHhcCCCCCCcceeecchHHHHHHHHHHHHhhhhheEEeccccccc-------
Confidence            9999999999999999999999999999999987666699999999999999999999999999999999999       


Q ss_pred             HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896         161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV  240 (718)
Q Consensus       161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~  240 (718)
                                                                              |+||++|.++|+|.||||+||||.
T Consensus       158 --------------------------------------------------------v~rL~am~~~g~L~~PviavNDa~  181 (268)
T PF05221_consen  158 --------------------------------------------------------VHRLRAMEKEGKLKFPVIAVNDAV  181 (268)
T ss_dssp             --------------------------------------------------------HHHHHHHHHTT---SEEEESTTSH
T ss_pred             --------------------------------------------------------chhhhhhhhhcccCCCeeEecchh
Confidence                                                                    778888888899999999999999


Q ss_pred             cccccc
Q psy7896         241 TKSKFD  246 (718)
Q Consensus       241 ~K~~fd  246 (718)
                      +|++||
T Consensus       182 tK~~FD  187 (268)
T PF05221_consen  182 TKHLFD  187 (268)
T ss_dssp             HHHTTH
T ss_pred             hHhhcC
Confidence            999754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....

>PF05221 AdoHcyase: S-adenosyl-L-homocysteine hydrolase; InterPro: IPR000043 Adenosylhomocysteinase (S-adenosyl-L-homocysteine hydrolase, 3

Probab=100.00  E-value=7.4e-47  Score=389.74  Aligned_cols=217  Identities=59%  Similarity=0.890  Sum_probs=180.9

Q ss_pred             cccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCch
Q psy7896         498 VHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQ  577 (718)
Q Consensus       498 ~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstq  577 (718)
                      .|.|+|++|+++|+++|+||++|||+|+.||++|..+|||+|+||++|||||+|||+|+++|+++||+|+||||||||||
T Consensus         2 ~y~VkDi~LA~~G~~~i~wa~~~MPvL~~lr~~~~~~kPl~G~rIa~cLHle~kTA~L~~tL~a~GAeV~~~~sNplSTQ   81 (268)
T PF05221_consen    2 DYKVKDISLAESGRKKIEWAERHMPVLMALRERFEAEKPLKGARIAGCLHLEAKTAVLAETLKALGAEVRWTGSNPLSTQ   81 (268)
T ss_dssp             EEBES-GGGHHHHHHHHHHHHHT-HHHHHHHHHHTTT-TTTTEEEEEES--SHHHHHHHHHHHHTTEEEEEEESSTTT--
T ss_pred             CCcccCccHhHHHHHHHHHHHhhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCeEEEecCCCcccc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecC-CCCeEEEecCCccccccc---------------------
Q psy7896         578 DHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLP-NGNHIILLAEGRLVNLGC---------------------  635 (718)
Q Consensus       578 d~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~-~~~~~i~ddggdl~~~~~---------------------  635 (718)
                      |||||||++.||+||||||||.|||||||+++|+   +.| .+|+|||||||||+++.-                     
T Consensus        82 DdvaAAL~~~Gi~V~A~~get~eey~~~i~~~L~---~~~~~~P~~iiDDG~Dl~~~lh~~~~~l~~~i~G~sEETTTGv  158 (268)
T PF05221_consen   82 DDVAAALAEEGIPVFAWKGETDEEYWWCIEKALS---WEDDHGPNLIIDDGGDLVNLLHTKRPELLSGIIGGSEETTTGV  158 (268)
T ss_dssp             HHHHHHHHHTTEEEEE-TT--HHHHHHHHHHCHS---ESTTCE-SEEEESSSHHHHHHHHHHHHHHHT-SEEEE-SHHHH
T ss_pred             hHHHHHhccCCceEEEeCCCCHHHHHHHHHHHhc---CCCCCCcceeecchHHHHHHHHHHHHhhhhheEEecccccccc
Confidence            9999999999999999999999999999999994   122 379999999999987431                     


Q ss_pred             -------cCC-------------------CCcceechhHHhHHHHHHHHHhcc--CCCCCceeeCChhhHHHHHHHhhhh
Q psy7896         636 -------AMG-------------------HPSFVMSNSFTNQVLAQIELWTKH--SQYPVGVYMLPKKLDEEVAALHLEH  687 (718)
Q Consensus       636 -------~~~-------------------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  687 (718)
                             ..|                   ||+||||+||+||+|||++||+++  ++|++|||.||++||++||++||++
T Consensus       159 ~rL~am~~~g~L~~PviavNDa~tK~~FDHP~eVMd~SFa~QaLa~~~L~~~~~~~~~~~~V~~lP~~lDe~VA~~kL~~  238 (268)
T PF05221_consen  159 HRLRAMEKEGKLKFPVIAVNDAVTKHLFDHPSEVMDMSFANQALAQIYLWKNPNSGKLEPGVYPLPKELDEEVARLKLKS  238 (268)
T ss_dssp             HHHHHHHHTT---SEEEESTTSHHHHTTHS-HHHHHHHHHHHHHHHHHHHHTGTTGGSTSSEEE--HHHHHHHHHHHHGG
T ss_pred             hhhhhhhhhcccCCCeeEecchhhHhhcCCchhhhhhHhHHHHHHHHHHHhCcCccccCCCEEECCccchHHHHHHHHHH
Confidence                   123                   999999999999999999999999  8999999999999999999999999


Q ss_pred             cCcccccCCHHHHhhcCCCCCCCCCCCCCC
Q psy7896         688 LGVKLTKLTEDQAKYLGLPIEGPYKPDHYR  717 (718)
Q Consensus       688 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  717 (718)
                      |||+||+||++|++||++|.+|||||||||
T Consensus       239 lGi~id~Lt~eQ~~YL~~~~~GP~k~~~yr  268 (268)
T PF05221_consen  239 LGIKIDKLTEEQAEYLGSWQEGPFKPDHYR  268 (268)
T ss_dssp             GT-------HHHHHHHTS-TTS-SS-TT--
T ss_pred             cCCccccCCHHHHHHcCCCCCCCCCccccC
Confidence            999999999999999999999999999998

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. This enzyme is ubiquitous, highly conserved, and may play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. AdoHcyase requires NAD+ as a cofactor and contains a central glycine-rich region which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity, 0006730 one-carbon metabolic process; PDB: 3N58_B 3H9U_C 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 1K0U_F 1B3R_A 1XWF_D ....

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=100.00  E-value=4.3e-45  Score=385.79  Aligned_cols=174  Identities=47%  Similarity=0.645  Sum_probs=151.5

Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST  576 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst  576 (718)
                      ..|.|+|++|+++|+++|+||++|||+|++||++|..+|||||+||++|||||+|||+|++||+++||||+|+|||||||
T Consensus         3 ~~y~v~Disla~~Gr~~i~wAe~~MP~L~~iR~~f~~~kPlkG~~i~~~lH~t~kTAvLietL~a~GAeV~~a~cNplST   82 (420)
T COG0499           3 QDYKVKDISLADEGRKEIEWAEREMPVLMAIREEFAEEKPLKGARIAGCLHMTAKTAVLIETLKAGGAEVRWASCNPLST   82 (420)
T ss_pred             ccceecchhhhhhhhHHHHHHHhhChHHHHHHHHHhhcCCCCccEEEEEEeehHHHHHHHHHHHhcCceEEEecCCCCcc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhc-CceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcceechhHHhHHHHH
Q psy7896         577 QDHAAAAIAAR-GVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQ  655 (718)
Q Consensus       577 qd~vaaal~~~-gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~~~~~~~~~~~~~  655 (718)
                      ||||||||++. |||||||||||.||||||++++|+      ..|||||||||||+.+.- .++|.+.            
T Consensus        83 qD~vaaAl~~~~GipVfA~kGe~~eeY~~~~~~vl~------~~p~iiiDDG~D~~~~vh-~~~~~l~------------  143 (420)
T COG0499          83 QDDVAAALAAKEGIPVFAWKGETLEEYYEAIDQVLD------WEPNIIIDDGGDLTKLVH-LERPELL------------  143 (420)
T ss_pred             cHHHHHHHhhccCceEEEEcCCCHHHHHHHHHHHhC------cCCCEEEecCcceeeeee-cccHHHH------------
Confidence            99999999755 999999999999999999999984      458999999999988763 4466543            


Q ss_pred             HHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcc
Q psy7896         656 IELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVK  691 (718)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (718)
                      -.++--.++...||++|..--.+  ..|..+.++|+
T Consensus       144 ~~i~G~tEETTTGV~RL~am~~~--G~L~fPai~VN  177 (420)
T COG0499         144 DAIKGGTEETTTGVHRLRAMEKD--GVLKFPAINVN  177 (420)
T ss_pred             HHhcCCCcccchHHHHHHHHHhc--CCcccceEeec
Confidence            33444556788999988654433  45566666553

>PLN02494 adenosylhomocysteinase

Probab=100.00  E-value=8.6e-43  Score=385.86  Aligned_cols=136  Identities=55%  Similarity=0.809  Sum_probs=129.3

Q ss_pred             cccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCC
Q psy7896         496 LLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFS  575 (718)
Q Consensus       496 ~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~npls  575 (718)
                      ...|.|+|++|+++|+++|+||++|||+|+.||++|..+|||+|+||++|||||+|||+|+++|+++||+|+||||||||
T Consensus         3 ~~~~~v~d~~la~~G~~~i~wa~~~mp~l~~~~~~~~~~~pl~G~~i~~~lHl~~kTa~L~~tL~~~GA~v~~~~~Np~s   82 (477)
T PLN02494          3 GREYKVKDMSQADFGRLEIELAEVEMPGLMACRTEFGPSQPFKGARITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFS   82 (477)
T ss_pred             CcceeecchhhhHHHHHHHHHHHHhCHHHHHHHHHhhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEcCCCcc
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC--CCeEEEecCCccccccc
Q psy7896         576 TQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN--GNHIILLAEGRLVNLGC  635 (718)
Q Consensus       576 tqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~--~~~~i~ddggdl~~~~~  635 (718)
                      |||||||||++.||+||||||||.||||||++++|+    |+|  +|+||+||||||+++.-
T Consensus        83 Tqd~vaaal~~~gi~vfa~~g~~~~ey~~~~~~~l~----~~~~~~p~~i~DDG~dl~~~~h  140 (477)
T PLN02494         83 TQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALD----WGPGGGPDLIVDDGGDATLLIH  140 (477)
T ss_pred             chHHHHHHHHhCCceEEEecCCCHHHHHHHHHHHHc----CCCCCCCCEEEeCCchHHHHHH
Confidence            999999999999999999999999999999999995    333  49999999999988764

>KOG1370|consensus

Probab=100.00  E-value=1.5e-42  Score=358.82  Aligned_cols=178  Identities=55%  Similarity=0.803  Sum_probs=157.5

Q ss_pred             cccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCC
Q psy7896         496 LLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFS  575 (718)
Q Consensus       496 ~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~npls  575 (718)
                      ...|.++||+++.+||+.|+.|+++||+||.+|++|..+|||+|+||++|+|+|++||+|+|||.+|||||+|+|||+||
T Consensus         5 ~~~ykv~~i~~aafGRkeieiAE~eMPglma~r~r~~~skPlkgArI~GClH~tvqTAVLiETLv~LGAev~WssCNIfS   84 (434)
T KOG1370|consen    5 SSNYKVKDISQAAFGRKEIEIAENEMPGLMALRKRYGPSKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFS   84 (434)
T ss_pred             CCCceeeechhhhhchhhhhhhhhhcchHHHHHHHhccCCCCCCCeeeeeeeeehhHHHHHHHHHHhCceeeeeecceec
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCCcceechhHHhHHHHH
Q psy7896         576 TQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQ  655 (718)
Q Consensus       576 tqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~~~~~~~~~~~~~~~~  655 (718)
                      |||++|||+|+.|+|||||+|||+|||||||+++|..+   ...|+||+|||||+++|.-.. ||.          .+..
T Consensus        85 TQdhaAAAiA~~g~Pvfawkget~ee~~wcie~~~~~~---g~~~nmIlDdggd~t~l~h~k-yp~----------~~~~  150 (434)
T KOG1370|consen   85 TQDHAAAAIAEAGVPVFAWKGETEEEYWWCIERCLNKD---GWQPNMILDDGGDLTHLVHEK-YPQ----------MFKK  150 (434)
T ss_pred             chhHHHHHHHhcCCceeeeccccchhhhhhhhhhhccC---CCCcceeecCCCchhhhhhhh-hHH----------HHhh
Confidence            99999999999999999999999999999999999532   234799999999999998543 553          3333


Q ss_pred             HHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcc
Q psy7896         656 IELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVK  691 (718)
Q Consensus       656 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  691 (718)
                      |.-.  .++...|||.|.+-..+  ..|+.++++|+
T Consensus       151 i~Gi--seEttTGVH~Lykm~k~--G~L~VPAiNVN  182 (434)
T KOG1370|consen  151 IRGI--SEETTTGVHNLYKMSKN--GKLKVPAINVN  182 (434)
T ss_pred             hccc--chhhhhhHHHHHHHHhC--Cceecceeecc
Confidence            3333  34567899999988877  77888888885

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=100.00  E-value=8.5e-42  Score=378.78  Aligned_cols=137  Identities=65%  Similarity=0.937  Sum_probs=128.4

Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST  576 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst  576 (718)
                      ..|.|+|++|+++|+++|+||+++||+|++||++|..+|||+|+||++|||||+|||+|+++|+++||+|+|||||||||
T Consensus         3 ~~~~v~d~~la~~G~~~i~wa~~~mP~L~~~~~~~~~~~pl~G~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~st   82 (476)
T PTZ00075          3 TDYKVKDISLAEFGRKEIELAENEMPGLMALREEYGPSKPLKGARITGCLHMTVQTAVLIETLKALGAEVRWCSCNIFST   82 (476)
T ss_pred             cceeeccchhhhHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCCcc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcC-ceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccc
Q psy7896         577 QDHAAAAIAARG-VAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGC  635 (718)
Q Consensus       577 qd~vaaal~~~g-i~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~  635 (718)
                      ||||||||++.| |+||||||||.||||||++++|+..  -..+||||+||||||+.+.-
T Consensus        83 qD~~aaal~~~g~i~vfa~~g~t~eey~~~~~~~l~~~--~~~~p~~i~DdG~dl~~~~~  140 (476)
T PTZ00075         83 QDHAAAAIAKAGSVPVFAWKGETLEEYWWCTEQALKWP--NGDGPNLIVDDGGDATLLVH  140 (476)
T ss_pred             ccHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHhcc--CCCCCCEEEECCcHHHHHHH
Confidence            999999999988 9999999999999999999999520  02369999999999997663

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=100.00  E-value=6.7e-38  Score=345.04  Aligned_cols=128  Identities=71%  Similarity=1.049  Sum_probs=122.5

Q ss_pred             hhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCchHHHHHH
Q psy7896         504 IKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAA  583 (718)
Q Consensus       504 ~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaa  583 (718)
                      ++|+++|+++|+||++|||+|+.||++|..+|||+|+||++|+|+|+|||+|+++|+++||+|+||+|||||||||||||
T Consensus         1 ~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~p~~g~~i~~~~hl~~~ta~l~~~L~~~GA~v~~~~~np~stqd~vaa~   80 (413)
T cd00401           1 ISLAAFGRKEIEIAENEMPGLMAIREEYGASKPLKGARIAGCLHMTVQTAVLIETLVALGAEVRWSSCNIFSTQDHAAAA   80 (413)
T ss_pred             CCchhhhhHHHHHHHHHCHHHHHHHHHhhccCCCCCCEEEEEEcchHHHHHHHHHHHHcCCEEEEEcCCCccchHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcccccc
Q psy7896         584 IAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLG  634 (718)
Q Consensus       584 l~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~  634 (718)
                      |++.||+||||+|+|.||||||++++|+.   .+++|++|+||||||+.+.
T Consensus        81 l~~~gi~v~a~~~~~~~~y~~~~~~~l~~---~~~~p~~i~DdGg~~~~~~  128 (413)
T cd00401          81 IAAAGIPVFAWKGETLEEYWWCIEQALKF---PDGEPNMILDDGGDLTLLI  128 (413)
T ss_pred             HHhcCceEEEEcCCCHHHHHHHHHHHHhc---cCCCCcEEEecchHHHHHH
Confidence            99999999999999999999999999953   1457999999999999865

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=100.00  E-value=1.6e-37  Score=342.87  Aligned_cols=133  Identities=62%  Similarity=0.931  Sum_probs=127.9

Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST  576 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst  576 (718)
                      ..|.|+|++|+++|+++|+||+++||+|+.||++|..+|||+|+||++|+|||+|||+|+++|+++||+|+||+||||||
T Consensus         6 ~~~~~~d~~l~~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~Hl~~~Ta~l~~~L~~~GA~v~~~~~np~St   85 (425)
T PRK05476          6 TDYKVADISLADWGRKEIEWAETEMPGLMAIREEFAAEKPLKGARIAGCLHMTIQTAVLIETLKALGAEVRWASCNPFST   85 (425)
T ss_pred             CceeecchhhhhhhhHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEeccccHHHHHHHHHHcCCEEEEEeCCCccc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcccccc
Q psy7896         577 QDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLG  634 (718)
Q Consensus       577 qd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~  634 (718)
                      ||||||||++.||+||||+|+|.||||||++++|+     +.+|++|+||||||+.+.
T Consensus        86 qd~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~-----~~~p~iiiDdGgdl~~~~  138 (425)
T PRK05476         86 QDDVAAALAAAGIPVFAWKGETLEEYWECIERALD-----GHGPNMILDDGGDLTLLV  138 (425)
T ss_pred             CHHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhc-----CCCCCEEEecccHHHHHH
Confidence            99999999999999999999999999999999981     467899999999999855

>TIGR00936 ahcY adenosylhomocysteinase

Probab=100.00  E-value=1.1e-36  Score=334.62  Aligned_cols=121  Identities=56%  Similarity=0.867  Sum_probs=117.1

Q ss_pred             ccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhc
Q psy7896         508 EWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAAR  587 (718)
Q Consensus       508 ~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~  587 (718)
                      ++|+++|+||+++||+|+.||++|.++|||+|+||++|+|||+|||+|+++|+++||+|+||+||||||||||||||++.
T Consensus         1 ~~g~~~i~w~~~~mp~l~~~~~~~~~~~pl~G~~i~~~~hl~~~Ta~l~~~L~~~GA~v~~~~~np~stqd~vaaaL~~~   80 (406)
T TIGR00936         1 AEGRKKIEWAEREMPVLMRIRERFSEEKPLKGARIAACLHVTVETAVLIETLVAGGAEVAWTSCNPLSTQDDVAAALAKA   80 (406)
T ss_pred             CccHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEechHHHHHHHHHHHHcCCEEEEEccCCccccHHHHHHHHhC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcccccc
Q psy7896         588 GVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLG  634 (718)
Q Consensus       588 gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~  634 (718)
                      ||+||||+|+|+|||||||+++|      +..|++|+||||||+++.
T Consensus        81 gi~v~a~~~~~~~ey~~~~~~~l------~~~p~~iiDdGgdl~~~~  121 (406)
T TIGR00936        81 GIPVFAWRGETNEEYYWAIEQVL------DHEPNIIIDDGADLIFLL  121 (406)
T ss_pred             CceEEEecCCCHHHHHHHHHHHh------cCCCCEEEecccHHHHHH
Confidence            99999999999999999999999      357899999999999865

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=100.00  E-value=7.3e-34  Score=276.20  Aligned_cols=135  Identities=63%  Similarity=0.969  Sum_probs=115.4

Q ss_pred             ccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy7896         247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH  326 (718)
Q Consensus       247 ~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~  326 (718)
                      |+|||+||++|+|+|+|+++++||+++|+|||+||+++|                                         
T Consensus         1 N~yG~g~S~~d~i~r~t~~~l~Gk~vvV~GYG~vG~g~A-----------------------------------------   39 (162)
T PF00670_consen    1 NRYGTGQSLVDGIMRATNLMLAGKRVVVIGYGKVGKGIA-----------------------------------------   39 (162)
T ss_dssp             HHHHHHHHHHHHHHHHH-S--TTSEEEEE--SHHHHHHH-----------------------------------------
T ss_pred             CccccchhHHHHHHhcCceeeCCCEEEEeCCCcccHHHH-----------------------------------------
Confidence            789999999999999999998888888888888777777                                         


Q ss_pred             hcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcE
Q psy7896         327 LGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGI  406 (718)
Q Consensus       327 lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDi  406 (718)
                                                            +.|+++|++|+|+|+||.++++|.++||++.+++++++++|+
T Consensus        40 --------------------------------------~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi   81 (162)
T PF00670_consen   40 --------------------------------------RALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADI   81 (162)
T ss_dssp             --------------------------------------HHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SE
T ss_pred             --------------------------------------HHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCE
Confidence                                                  888999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCc
Q psy7896         407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV  460 (718)
Q Consensus       407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V  460 (718)
                      |+++||++++|+.++|++||+|++|+|+||+|.|||+++|.+.++++.+++|++
T Consensus        82 ~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~~v  135 (162)
T PF00670_consen   82 FVTATGNKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRPQV  135 (162)
T ss_dssp             EEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEETTE
T ss_pred             EEECCCCccccCHHHHHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCCCe
Confidence            999999999999999999999999999999999999999999888999999988

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=99.93  E-value=3.6e-25  Score=238.00  Aligned_cols=223  Identities=17%  Similarity=0.138  Sum_probs=156.1

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh--hhhhc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ--AKYLD  343 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~--~~~~g  343 (718)
                      .-|.|+..|.|....++. +++++|+.|+.+..-....+..++-+  +.+.|++...+-.   ++.++|..+.  ....+
T Consensus        66 ~LKlIa~~~~G~D~vDl~-aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~---~r~g~w~~~~~~~~~~~  141 (324)
T COG1052          66 GLKLIATRSAGYDNVDLE-AAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRR---VREGNWSLSGGPDPLLG  141 (324)
T ss_pred             CcEEEEEeccccCcccHH-HHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHH---HhcCcccccCCcccccc
Confidence            456677776666666665 66999999998765444444443334  3445655333311   2222332221  22558


Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCH
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRG  419 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~  419 (718)
                      .+++|||+||||+|+||+++|+++++|||+|++|++.|.+. .....++.+.+++|++++||||+++    ..|+|+||+
T Consensus       142 ~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~  220 (324)
T COG1052         142 FDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPNPE-AEKELGARYVDLDELLAESDIISLHCPLTPETRHLINA  220 (324)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCCChH-HHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCH
Confidence            89999999999999999999999999999999999887622 2233447777899999999999986    358999999


Q ss_pred             HHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896         420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      +.|++||+|++|||+|||. -+|.++|.+..-+........|||+.|...+.+++.+..+.   +|++.|||.++.+...
T Consensus       221 ~~l~~mk~ga~lVNtaRG~-~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~---~~vvltPHia~at~ea  296 (324)
T COG1052         221 EELAKMKPGAILVNTARGG-LVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNF---PNVVLTPHIASATEEA  296 (324)
T ss_pred             HHHHhCCCCeEEEECCCcc-ccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCC---CCEEEccccccccHHH
Confidence            9999999999999999996 58877766642222222345566666665555555443222   6799999988776444

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.92  E-value=9.1e-25  Score=234.98  Aligned_cols=215  Identities=16%  Similarity=0.118  Sum_probs=148.2

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhh--hhHHHHHHHHHHhcccccccchhh-hhhhccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--LDEEVAALHLEHLGVKLTKLTEDQ-AKYLDIM  345 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~--L~r~i~~~~l~~lgv~~~~~~~~~-~~~~g~e  345 (718)
                      -|-|...|.|...++.. +++.+|+.|++++....+.++.++-++.  +.|++...+-..      +...|+ ..+.|.+
T Consensus        67 Lk~I~~~g~Gvd~id~~-~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~------~~g~W~~~~~~g~e  139 (324)
T COG0111          67 LKAIGRAGAGVDNIDLE-AATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQ------RRGEWDRKAFRGTE  139 (324)
T ss_pred             ceEEEEccccccccCHH-HHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHH------HcCCcccccccccc
Confidence            34455555555555544 6788899999888777777666666643  345443332111      122233 3567889


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~  421 (718)
                      |.||||||||+|+||+.+|++|++|||+|++||+...+.......++.+.+|++++++||||+++    ..|+|||+++.
T Consensus       140 l~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~  219 (324)
T COG0111         140 LAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEE  219 (324)
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHH
Confidence            99999999999999999999999999999999774444333333455677899999999999986    46899999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhccccceeeec-CCcccCccccchhhHHHHhhhcccccccccccccCCccccc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVK-PQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLV  498 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~-P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~  498 (718)
                      |++||+|++|||+|||. -+|.++|.+. ++...+. ..+||++.|..-      +..+.+-.+|++.|||.++.+..
T Consensus       220 ~a~MK~gailIN~aRG~-vVde~aL~~A-L~~G~i~gA~lDVf~~EPl~------~~~pL~~~pnV~~TPHia~~T~e  289 (324)
T COG0111         220 LAKMKPGAILINAARGG-VVDEDALLAA-LDSGKIAGAALDVFEEEPLP------ADSPLWDLPNVILTPHIGGSTDE  289 (324)
T ss_pred             HhhCCCCeEEEECCCcc-eecHHHHHHH-HHcCCcceEEecCCCCCCCC------CCChhhcCCCeEECCcccccCHH
Confidence            99999999999999996 4777766653 1222221 333343333211      11233344889999997766543

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.90  E-value=5.8e-23  Score=224.79  Aligned_cols=259  Identities=16%  Similarity=0.107  Sum_probs=167.9

Q ss_pred             cEEEEEecCCCChhHH--HHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896         270 KVAVVAGYGDVGKGCA--QSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA  347 (718)
Q Consensus       270 k~vvViGyG~vG~~~A--~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~  347 (718)
                      .++..||.-.+|.+..  .+++++|+.|+.+.......+..++-+..+          .+.           +..+.+|.
T Consensus        57 ~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL----------~l~-----------r~~g~~L~  115 (378)
T PRK15438         57 KPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLL----------MLA-----------ERDGFSLH  115 (378)
T ss_pred             CCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHH----------HHh-----------ccCCCCcC
Confidence            4455555544554442  367899999997654444333333333221          111           11367899


Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC---C-----CCCCcCH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT---G-----CKDIIRG  419 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at---g-----t~~lI~~  419 (718)
                      ||||||||+|+||+.+|++|++|||+|++||+.  +...  .....+.++++++++||||++++   .     |.|+|++
T Consensus       116 gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp~--~~~~--~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~  191 (378)
T PRK15438        116 DRTVGIVGVGNVGRRLQARLEALGIKTLLCDPP--RADR--GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE  191 (378)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCc--cccc--ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH
Confidence            999999999999999999999999999999742  2111  12234679999999999999862   2     8899999


Q ss_pred             HHHhcCCCCeEEEEcCCCCccccHHHHhc---------cccceeeecCC--------c-ccCccccchhhHHHHh-----
Q psy7896         420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDK---------NAVEKVNVKPQ--------V-SPTSRTKHLTTEALLA-----  476 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~---------~~l~~~~v~P~--------V-~v~s~e~~~~~eal~n-----  476 (718)
                      +.|++||+|++|||+|||. .+|.++|.+         .++|+++.+|.        + ..|||.+.++.|...+     
T Consensus       192 ~~l~~mk~gailIN~aRG~-vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~~~~~~~~  270 (378)
T PRK15438        192 KLIRSLKPGAILINACRGA-VVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGKARGTTQV  270 (378)
T ss_pred             HHHhcCCCCcEEEECCCch-hcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHHHHHHHHH
Confidence            9999999999999999996 477666553         14688888773        2 3678888776555432     


Q ss_pred             ------hhcccccccccccccC---C-----c----------cccccccc-c-hhhcccchhhhHHHHhcChHHHHHHHH
Q psy7896         477 ------TCNSLFKYSLVNTIHE---A-----P----------TLLVHLST-D-IKLAEWGRKTIIMAENEMPGLMALRRK  530 (718)
Q Consensus       477 ------~~~~~~~~nlv~~~h~---~-----a----------~~~~Y~i~-D-~~La~~G~~kI~wa~~~MP~L~~Lr~~  530 (718)
                            ..+.........++..   .     .          ....|+++ | ..|-...        ..-..|+.|||+
T Consensus       271 ~~~l~~~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~~yd~~~dd~~~r~~~--------~~~~~Fd~lRk~  342 (378)
T PRK15438        271 FEAYSKFIGHEQHVALDTLLPAPEFGRITLHGPLDQPTLKRLVHLVYDVRRDDAPLRKVA--------GIPGEFDKLRKN  342 (378)
T ss_pred             HHHHHHHHcCccccchhccCCcccccccccCCcCCHHHHHHHHHHhCChHhHHHHHHHhc--------cCccHHHHHhhc
Confidence                  1111100111111110   0     0          01456664 2 3331111        133479999999


Q ss_pred             hcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEe
Q psy7896         531 YGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQW  568 (718)
Q Consensus       531 f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~  568 (718)
                      |..+++|++.++.     .. .+.....|.++|+++..
T Consensus       343 y~~rre~~~~~~~-----~~-~~~~~~~~~~lg~~~~~  374 (378)
T PRK15438        343 YLERREWSSLYVI-----CD-DASAASLLCKLGFNAVH  374 (378)
T ss_pred             CCccccccceeec-----CC-chHHHHHHHHcCccccc
Confidence            9999999999993     11 23445688999998643

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.89  E-value=1.2e-22  Score=218.82  Aligned_cols=217  Identities=13%  Similarity=0.082  Sum_probs=142.6

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchh-hhhhhccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTED-QAKYLDIM  345 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~-~~~~~g~e  345 (718)
                      -|-|...|.|..+.+.. +++++|+.|+.+.......+..++-++  .+.|++...+-   .++.+.|... ...+.|.+
T Consensus        67 Lk~I~~~g~G~d~id~~-~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~---~~~~g~w~~~~~~~~~g~~  142 (323)
T PRK15409         67 LRAASTISVGYDNFDVD-ALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAE---RVKAGEWTASIGPDWFGTD  142 (323)
T ss_pred             CeEEEECceecccccHH-HHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHH---HHHcCCCcccCccccccCC
Confidence            34455555555555554 678999999987654444444444443  44565533321   1112223211 11235789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGE  420 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e  420 (718)
                      |.||||||||+|+||+.+|++++ +|||+|+++++.+... .....|....++++++++||+|+++    +.|+|+|+++
T Consensus       143 L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~~~~-~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~  221 (323)
T PRK15409        143 VHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRHHKE-AEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAE  221 (323)
T ss_pred             CCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCCchh-hHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHH
Confidence            99999999999999999999998 9999999997654222 1223466778999999999999986    4689999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLL  497 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~  497 (718)
                      .|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++.      -.+|++.|||.++.+.
T Consensus       222 ~l~~mk~ga~lIN~aRG~-vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~------~~~nvilTPHia~~t~  291 (323)
T PRK15409        222 QFAKMKSSAIFINAGRGP-VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLL------SLPNVVAVPHIGSATH  291 (323)
T ss_pred             HHhcCCCCeEEEECCCcc-ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhh------cCCCEEEcCcCCCCcH
Confidence            999999999999999996 477776665321111112234444443221112222      2389999999776543

>KOG0068|consensus

Probab=99.89  E-value=5.3e-23  Score=216.96  Aligned_cols=171  Identities=18%  Similarity=0.215  Sum_probs=131.7

Q ss_pred             EEEEEecCCCChhH--HHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         271 VAVVAGYGDVGKGC--AQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       271 ~vvViGyG~vG~~~--A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      +++++|.-.+|.+.  ..++.++|+-|..++....+++..+.-|+  .+.|++....     .....-.|.+..++|.+|
T Consensus        70 ~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~-----~s~k~g~wnr~~~~G~el  144 (406)
T KOG0068|consen   70 GLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQAS-----ASMKEGKWNRVKYLGWEL  144 (406)
T ss_pred             CeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhh-----eeeecCceeecceeeeEE
Confidence            34445443333333  13569999999988888887777766664  3456553332     222223445677889999


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l  422 (718)
                      .|||+||+|+|+||+.+|++++++||+|+.||+-+. ..++...|+++++++|++..||||+++    +.|.++++.+.|
T Consensus       145 ~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~~-~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tf  223 (406)
T KOG0068|consen  145 RGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPITP-MALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETF  223 (406)
T ss_pred             eccEEEEeecccchHHHHHHHHhcCceEEeecCCCc-hHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHH
Confidence            999999999999999999999999999999965432 234456799999999999999999986    468999999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++||+|+++||++||. -+|.++|.+
T Consensus       224 A~mKkGVriIN~aRGG-vVDe~ALv~  248 (406)
T KOG0068|consen  224 AKMKKGVRIINVARGG-VVDEPALVR  248 (406)
T ss_pred             HHhhCCcEEEEecCCc-eechHHHHH
Confidence            9999999999999996 588776655

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.89  E-value=3.7e-22  Score=218.95  Aligned_cols=263  Identities=16%  Similarity=0.154  Sum_probs=166.1

Q ss_pred             EEEEEecCCCChhH--HHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccC
Q psy7896         271 VAVVAGYGDVGKGC--AQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG  348 (718)
Q Consensus       271 ~vvViGyG~vG~~~--A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~G  348 (718)
                      ++..|+.-.+|.+.  ..+++++|+.|+.+.......+..++-+..+          .+.           +..+.++.|
T Consensus        58 ~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL----------~l~-----------r~~g~~l~g  116 (381)
T PRK00257         58 RVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLL----------TLA-----------EREGVDLAE  116 (381)
T ss_pred             CCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHH----------HHh-----------cccCCCcCc
Confidence            34444444444443  2367999999997654333333332222211          111           124678999


Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc---C-----CCCCCcCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT---T-----GCKDIIRGE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a---t-----gt~~lI~~e  420 (718)
                      |||||||+|+||+.+|+++++||++|++||+....    ...+..+.+++|++++||+|+++   |     .|+|+|+++
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp~~~~----~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~  192 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGLGWKVLVCDPPRQE----AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEA  192 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCcccc----cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHH
Confidence            99999999999999999999999999999753221    11234567999999999999986   2     378999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhc---------cccceeeecCC---------cccCccccchhhHHHHhh-----
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK---------NAVEKVNVKPQ---------VSPTSRTKHLTTEALLAT-----  477 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~---------~~l~~~~v~P~---------V~v~s~e~~~~~eal~n~-----  477 (718)
                      .|++||+|++|||+|||. .+|.++|.+         .++|+++.+|.         +..|||.+.++.|...+.     
T Consensus       193 ~l~~mk~gailIN~aRG~-vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~~r~~~~~~  271 (381)
T PRK00257        193 FLASLRPGAWLINASRGA-VVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGKARGTAQIY  271 (381)
T ss_pred             HHhcCCCCeEEEECCCCc-ccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHHHHHHHHHH
Confidence            999999999999999996 477666553         13688877664         346788887765543331     


Q ss_pred             ------hcccccccccccccCC----------c---------cccccccc-c-hhhcccchhhhHHHHhcChHHHHHHHH
Q psy7896         478 ------CNSLFKYSLVNTIHEA----------P---------TLLVHLST-D-IKLAEWGRKTIIMAENEMPGLMALRRK  530 (718)
Q Consensus       478 ------~~~~~~~nlv~~~h~~----------a---------~~~~Y~i~-D-~~La~~G~~kI~wa~~~MP~L~~Lr~~  530 (718)
                            .+.....++..++...          .         ....|+++ | ..|-..-...   ....-..|+.|||+
T Consensus       272 ~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~yd~~~dd~~~r~~~~~~---~~~~~~~Fd~lRk~  348 (381)
T PRK00257        272 QALCRFFGIPARVSLTDLLPPPWLAQIDLDASADPAWALATLCRAVYDPRRDDAAFRRSLTGD---VAQQRAAFDALRKH  348 (381)
T ss_pred             HHHHHHHcCCCccchhccCCCccccccccccCCCCHHHHHHHHHHhCChHHHHHHHHHhhccc---cccchhHHHHHHhc
Confidence                  1111111222221100          0         01456664 2 3331110000   01133479999999


Q ss_pred             hcccccCCceEEEeeecchhhHHHHHHHHHHcCCeE
Q psy7896         531 YGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEV  566 (718)
Q Consensus       531 f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v  566 (718)
                      |+.+++|++.++..    +...+.....|.++|+++
T Consensus       349 y~~rre~~~~~~~~----~~~~~~~~~~~~~lg~~~  380 (381)
T PRK00257        349 YPLRREIEGLRVRL----TGESPELAQLVRALGAQL  380 (381)
T ss_pred             CCccccccceeeec----cCCchHHHHHHHHcCCcc
Confidence            99999999998832    112234456888899864

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.89  E-value=1.4e-22  Score=217.03  Aligned_cols=218  Identities=19%  Similarity=0.154  Sum_probs=143.1

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh----hhh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA----KYL  342 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~----~~~  342 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++....-.   ++.+.|.....    ...
T Consensus        64 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~---~~~g~w~~~~~~~~~~~~  139 (311)
T PRK08410         64 LKLICITATGTNNVDIE-YAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRY---VKSGEYSESPIFTHISRP  139 (311)
T ss_pred             CeEEEEcccccccccHH-HHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHH---HHcCCCCcCCCccccCcc
Confidence            34555556665555554 67899999998765444444444444  4445655332211   11122221100    012


Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIR  418 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~  418 (718)
                      +.+|.||||||||+|+||+.+|+++++|||+|++||+.+..    ...++..+++++++++||+|+++    ..|+|+|+
T Consensus       140 ~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~~~----~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~  215 (311)
T PRK08410        140 LGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSGKN----KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIA  215 (311)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCccc----cccCceeecHHHHhhcCCEEEEeCCCCchhhcccC
Confidence            57899999999999999999999999999999999865422    12467778999999999999986    46899999


Q ss_pred             HHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccccc
Q psy7896         419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLV  498 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~  498 (718)
                      ++.|++||+|++|||+|||. -+|.++|.+.. +...+...+||++.|..-...++.+.   ...+|++.|||.+..+..
T Consensus       216 ~~~~~~Mk~~a~lIN~aRG~-vVDe~AL~~AL-~~g~i~AaLDV~~~EP~~~~~pL~~~---~~~~NvilTPH~a~~t~e  290 (311)
T PRK08410        216 YKELKLLKDGAILINVGRGG-IVNEKDLAKAL-DEKDIYAGLDVLEKEPMEKNHPLLSI---KNKEKLLITPHIAWASKE  290 (311)
T ss_pred             HHHHHhCCCCeEEEECCCcc-ccCHHHHHHHH-HcCCeEEEEecCCCCCCCCCChhhcc---CCCCCEEECCccccCCHH
Confidence            99999999999999999996 57877776532 22222234555555532111112110   012699999998766543


Q ss_pred             c
Q psy7896         499 H  499 (718)
Q Consensus       499 Y  499 (718)
                      .
T Consensus       291 ~  291 (311)
T PRK08410        291 A  291 (311)
T ss_pred             H
Confidence            3

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.87  E-value=8e-22  Score=211.81  Aligned_cols=214  Identities=16%  Similarity=0.116  Sum_probs=136.4

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh----hhhh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ----AKYL  342 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~----~~~~  342 (718)
                      -|-|...|.|....+.. .++++|+.|+.+.......+..++-+  +.+.|++...+-.   .+.+.|..+.    ..+.
T Consensus        67 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~W~~~~~~~~~~~~  142 (317)
T PRK06487         67 LKLILVAATGTNNVDLA-AARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQA---VAAGRWQQSSQFCLLDFP  142 (317)
T ss_pred             CeEEEEcCccccccCHH-HHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHH---HHcCCCccCcccccccCc
Confidence            34555556665555554 67899999998765443444433334  3444554333211   1112222111    1123


Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIR  418 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~  418 (718)
                      +.+|.||||||||+|+||+.+|+++++|||+|+++++.+..      .....++++|++++||+|+++    +.|+|+|+
T Consensus       143 ~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~  216 (317)
T PRK06487        143 IVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRP------ARPDRLPLDELLPQVDALTLHCPLTEHTRHLIG  216 (317)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCCc------ccccccCHHHHHHhCCEEEECCCCChHHhcCcC
Confidence            57899999999999999999999999999999999864321      123456899999999999986    46899999


Q ss_pred             HHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccc
Q psy7896         419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLL  497 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~  497 (718)
                      ++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++.+    .-.+|++.|||.+..+.
T Consensus       217 ~~~~~~mk~ga~lIN~aRG~-vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~----~~~pnvilTPHia~~t~  290 (317)
T PRK06487        217 ARELALMKPGALLINTARGG-LVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLA----PDIPRLIVTPHSAWGSR  290 (317)
T ss_pred             HHHHhcCCCCeEEEECCCcc-ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhh----cCCCCEEECCccccCCH
Confidence            99999999999999999996 4777666553111111112233333332111011111    01379999999876543

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.87  E-value=9.1e-22  Score=194.48  Aligned_cols=149  Identities=20%  Similarity=0.252  Sum_probs=105.9

Q ss_pred             hhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCC
Q psy7896         338 QAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGC  413 (718)
Q Consensus       338 ~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt  413 (718)
                      .....+.++.|+||||||+|+||+.+|+++++|||+|+++|+.+.........++...+++|++++||+|+++    ..|
T Consensus        26 ~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~~~~~l~ell~~aDiv~~~~plt~~T  105 (178)
T PF02826_consen   26 RERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGVEYVSLDELLAQADIVSLHLPLTPET  105 (178)
T ss_dssp             HTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTEEESSHHHHHHH-SEEEE-SSSSTTT
T ss_pred             CcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccceeeehhhhcchhhhhhhhhcccccc
Confidence            3455689999999999999999999999999999999999988765443445678889999999999999986    458


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEA  493 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~  493 (718)
                      +++|+++.|++||+|++|||+|||. -+|.++|.+..-+.....-.+||++.|..-...++      +-.+|++.|||.+
T Consensus       106 ~~li~~~~l~~mk~ga~lvN~aRG~-~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l------~~~~nvi~TPH~a  178 (178)
T PF02826_consen  106 RGLINAEFLAKMKPGAVLVNVARGE-LVDEDALLDALESGKIAGAALDVFEPEPLPADSPL------WDLPNVILTPHIA  178 (178)
T ss_dssp             TTSBSHHHHHTSTTTEEEEESSSGG-GB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHH------HTSTTEEEESS-T
T ss_pred             ceeeeeeeeeccccceEEEeccchh-hhhhhHHHHHHhhccCceEEEECCCCCCCCCCChH------HcCCCEEEeCccC
Confidence            8999999999999999999999996 57766665421111111122333333321111223      2348999999964

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PLN02306 hydroxypyruvate reductase

Probab=99.87  E-value=1.3e-21  Score=215.14  Aligned_cols=216  Identities=14%  Similarity=0.109  Sum_probs=140.5

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh-hhhcccc
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA-KYLDIML  346 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~-~~~g~eL  346 (718)
                      |.+...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++...+-.   ++.+.|..|.. ...|.+|
T Consensus        88 k~I~~~~~G~D~iD~~-aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~---~~~g~w~~~~~~~~~g~~L  163 (386)
T PLN02306         88 KAFSNMAVGYNNVDVE-AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEF---MRAGLYEGWLPHLFVGNLL  163 (386)
T ss_pred             eEEEECCcccccccHH-HHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHH---HHcCCCccccccccCCcCC
Confidence            5566666666666655 56899999998765444444444444  4445655332211   11122322332 2357899


Q ss_pred             cCcEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHH--hhcC------------ce-ecCHHHHhccCcEEEEc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQA--SMEG------------YE-VTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a--~~~G------------~~-v~~Leell~~aDiIi~a  410 (718)
                      .||||||||+|+||+.+|++++ +|||+|++||+.+......  ...|            +. ..+++|++++||||+++
T Consensus       164 ~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh  243 (386)
T PLN02306        164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLH  243 (386)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEe
Confidence            9999999999999999999985 9999999998765322111  0111            12 35899999999999985


Q ss_pred             ----CCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccc
Q psy7896         411 ----TGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSL  486 (718)
Q Consensus       411 ----tgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nl  486 (718)
                          ..|+|+|+++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|.. ..+++.+      .+|+
T Consensus       244 ~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~-lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~------~pNV  315 (386)
T PLN02306        244 PVLDKTTYHLINKERLALMKKEAVLVNASRGP-VIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLAD------MKNA  315 (386)
T ss_pred             CCCChhhhhhcCHHHHHhCCCCeEEEECCCcc-ccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhh------CCCE
Confidence                4689999999999999999999999996 47766665431111111223344444421 1112222      3799


Q ss_pred             cccccCCcccc
Q psy7896         487 VNTIHEAPTLL  497 (718)
Q Consensus       487 v~~~h~~a~~~  497 (718)
                      +.|||.++.+.
T Consensus       316 ilTPHiag~T~  326 (386)
T PLN02306        316 VVVPHIASASK  326 (386)
T ss_pred             EECCccccCcH
Confidence            99999876543

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.87  E-value=1.7e-21  Score=208.98  Aligned_cols=218  Identities=15%  Similarity=0.105  Sum_probs=136.7

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh----hhhh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ----AKYL  342 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~----~~~~  342 (718)
                      -|-|...|.|..+.+.. .++++|+.|+.+.......+..++-+  +.+.|++...+-..   +.+.|....    ..+.
T Consensus        66 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~---~~~~W~~~~~~~~~~~~  141 (314)
T PRK06932         66 LKLIAITATGTNNVDLV-AAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQ---LSDRWATCKQFCYFDYP  141 (314)
T ss_pred             CeEEEEecccccccCHH-HHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHH---HcCCCCcCccccccCCc
Confidence            45566666666655554 66899999998765444444444334  34445543322111   112221110    0123


Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIR  418 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~  418 (718)
                      +.+|.||||||||+|+||+.+|+++++|||+|+++++.+...   .  .....+++|++++||||+++    ..|+|+|+
T Consensus       142 ~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~---~--~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~  216 (314)
T PRK06932        142 ITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV---C--REGYTPFEEVLKQADIVTLHCPLTETTQNLIN  216 (314)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc---c--ccccCCHHHHHHhCCEEEEcCCCChHHhcccC
Confidence            568999999999999999999999999999999997543211   1  12356899999999999986    45899999


Q ss_pred             HHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccccc
Q psy7896         419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLV  498 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~  498 (718)
                      ++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++.+.  ..-.+|++.|||.+..+..
T Consensus       217 ~~~l~~mk~ga~lIN~aRG~-~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~--~~~~pnvilTPHia~~t~e  293 (314)
T PRK06932        217 AETLALMKPTAFLINTGRGP-LVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQA--AKRLPNLLITPHIAWASDS  293 (314)
T ss_pred             HHHHHhCCCCeEEEECCCcc-ccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHh--hcCCCCEEECCccccCcHH
Confidence            99999999999999999996 47776665531111111122333333311001111100  0013799999998766433

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.86  E-value=1.1e-21  Score=217.28  Aligned_cols=168  Identities=15%  Similarity=0.144  Sum_probs=118.6

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh-hhhccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA-KYLDIM  345 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~-~~~g~e  345 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++....-.   ++.+   .|.+ .+.+.+
T Consensus        76 Lk~I~~~~~G~d~id~~-~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~---~~~g---~w~~~~~~~~~  148 (409)
T PRK11790         76 LVAIGCFCIGTNQVDLD-AAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAK---AHRG---GWNKSAAGSFE  148 (409)
T ss_pred             CeEEEECceecccccHH-HHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHH---HHcC---cccccccCccc
Confidence            34455555555555554 66899999998654444444433334  3445654332211   1111   2222 235789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTT----TGCKDIIRGE  420 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~a----tgt~~lI~~e  420 (718)
                      |.||||||||+|+||+.+|+++++|||+|++||+.+...    ..++. +.+++|++++||+|+++    ..|+|+|+++
T Consensus       149 L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~~~~----~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~  224 (409)
T PRK11790        149 VRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDIEDKLP----LGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAE  224 (409)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCcccc----cCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHH
Confidence            999999999999999999999999999999998654321    12333 45899999999999986    3589999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      .|++||+|++|||+|||. -+|.++|.+
T Consensus       225 ~l~~mk~ga~lIN~aRG~-~vde~aL~~  251 (409)
T PRK11790        225 ELALMKPGAILINASRGT-VVDIDALAD  251 (409)
T ss_pred             HHhcCCCCeEEEECCCCc-ccCHHHHHH
Confidence            999999999999999996 477666654

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.86  E-value=2.3e-20  Score=212.77  Aligned_cols=171  Identities=18%  Similarity=0.193  Sum_probs=120.6

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA  347 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~  347 (718)
                      |-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++...+-.   .+.+.|.  +..+.|.+|.
T Consensus        64 k~I~~~~~G~d~id~~-~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~W~--~~~~~g~~l~  137 (525)
T TIGR01327        64 KVIGRAGVGVDNIDIE-AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADAS---LKEGEWD--RKAFMGTELY  137 (525)
T ss_pred             eEEEECCcccchhcHH-HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHH---HHcCCcc--ccccCccccC
Confidence            4444445555444444 67899999998765444444444334  3445655333211   1111221  2235688999


Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTT----TGCKDIIRGEHF  422 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~a----tgt~~lI~~e~l  422 (718)
                      ||||||||+|+||+.+|++|++|||+|++||+.... ..+...|+... +++|++++||+|+++    ..|+++|+++.|
T Consensus       138 gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l  216 (525)
T TIGR01327       138 GKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEEL  216 (525)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHH
Confidence            999999999999999999999999999999864322 12233466654 799999999999986    358999999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++||+|++|||+|||. -+|.++|.+
T Consensus       217 ~~mk~ga~lIN~aRG~-~vde~aL~~  241 (525)
T TIGR01327       217 AKMKKGVIIVNCARGG-IIDEAALYE  241 (525)
T ss_pred             hcCCCCeEEEEcCCCc-eeCHHHHHH
Confidence            9999999999999996 477666554

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.85  E-value=1.4e-20  Score=203.59  Aligned_cols=218  Identities=15%  Similarity=0.089  Sum_probs=144.2

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccch----hhh-hh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTE----DQA-KY  341 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~----~~~-~~  341 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++....-..   +.+.|..    +.. .+
T Consensus        68 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~---~~g~W~~~~~~~~~~~~  143 (333)
T PRK13243         68 LRIVANYAVGYDNIDVE-EATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFV---RSGEWKRRGVAWHPLMF  143 (333)
T ss_pred             CeEEEecCccccccCHH-HHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHH---HcCCCCccccccccccc
Confidence            35555556666555554 67899999998655444444444444  34446553332111   1122211    111 23


Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCc
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDII  417 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI  417 (718)
                      .|.+|.||||||||+|+||+.+|++|++|||+|++||+.+... .....|....++++++++||+|+++.    .|+++|
T Consensus       144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i  222 (333)
T PRK13243        144 LGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRKPE-AEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMI  222 (333)
T ss_pred             cccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCChh-hHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhcc
Confidence            5789999999999999999999999999999999999876433 22334666779999999999999873    478999


Q ss_pred             CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccc
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLL  497 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~  497 (718)
                      +++.|+.||+|++|||+|||. .+|.++|.+..-+.......+||++.|... ..++      +-.+|++.|||.+..+.
T Consensus       223 ~~~~~~~mk~ga~lIN~aRg~-~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL------~~~~nvilTPHia~~t~  294 (333)
T PRK13243        223 NEERLKLMKPTAILVNTARGK-VVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEEL------FSLKNVVLAPHIGSATF  294 (333)
T ss_pred             CHHHHhcCCCCeEEEECcCch-hcCHHHHHHHHHcCCeEEEEeccCCCCCCC-Cchh------hcCCCEEECCcCCcCHH
Confidence            999999999999999999996 477766655321111112234444444221 1122      23379999999887654


Q ss_pred             cc
Q psy7896         498 VH  499 (718)
Q Consensus       498 ~Y  499 (718)
                      ..
T Consensus       295 e~  296 (333)
T PRK13243        295 EA  296 (333)
T ss_pred             HH
Confidence            33

>PLN02928 oxidoreductase family protein

Probab=99.85  E-value=1e-20  Score=205.69  Aligned_cols=214  Identities=17%  Similarity=0.130  Sum_probs=134.5

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc---hhhhhhh--hhhhhhhHHHHHHHHHHhcccccccchhhhhhhc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP---INALQAS--MEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLD  343 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp---~r~v~Av--aeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g  343 (718)
                      -|-|...|.|..+.+.. .++++|+.|+.+....   ...+..+  +..+.+.|++....-.   .+.   ..|. ...+
T Consensus        83 Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~---~~~---~~w~-~~~~  154 (347)
T PLN02928         83 MKLIMQFGVGLEGVDVD-AATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQIS---LKA---RRLG-EPIG  154 (347)
T ss_pred             ceEEEECCcccCcCcHH-HHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHH---HHc---CCcc-cccc
Confidence            34555556665555554 6688999998765321   1122222  2233444544222110   011   1122 1346


Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH------------hhcCceecCHHHHhccCcEEEEc-
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA------------SMEGYEVTTMEEAAKEGGIFVTT-  410 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a------------~~~G~~v~~Leell~~aDiIi~a-  410 (718)
                      .+|.||||||||+|+||+.+|++|++|||+|++|++........            ...+....+++|++++||+|+++ 
T Consensus       155 ~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~l  234 (347)
T PLN02928        155 DTLFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCC  234 (347)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECC
Confidence            78999999999999999999999999999999998753221111            01122567899999999999986 


Q ss_pred             ---CCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccccccc
Q psy7896         411 ---TGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLV  487 (718)
Q Consensus       411 ---tgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv  487 (718)
                         ..|+++|+++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-...++      +-.+|++
T Consensus       235 Plt~~T~~li~~~~l~~Mk~ga~lINvaRG~-lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL------~~~~nvi  307 (347)
T PLN02928        235 TLTKETAGIVNDEFLSSMKKGALLVNIARGG-LLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPI------LKHPNVI  307 (347)
T ss_pred             CCChHhhcccCHHHHhcCCCCeEEEECCCcc-ccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChh------hcCCCEE
Confidence               4589999999999999999999999996 47777666531111111123333333321111122      2238999


Q ss_pred             ccccCCcccc
Q psy7896         488 NTIHEAPTLL  497 (718)
Q Consensus       488 ~~~h~~a~~~  497 (718)
                      .|||.+..+.
T Consensus       308 iTPHia~~t~  317 (347)
T PLN02928        308 ITPHVAGVTE  317 (347)
T ss_pred             ECCcCCCChH
Confidence            9999876543

>PRK07574 formate dehydrogenase; Provisional

Probab=99.84  E-value=1.2e-20  Score=207.23  Aligned_cols=211  Identities=12%  Similarity=0.060  Sum_probs=139.5

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|...++.. +++++|+.|+.+.......+...+-+  +.+.|++...+-..   +.+.|........+.+|
T Consensus       115 LK~I~~~g~G~D~id~~-aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~---~~g~W~~~~~~~~~~~L  190 (385)
T PRK07574        115 LKLAITAGIGSDHVDLQ-AASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQA---VEGGWNIADCVSRSYDL  190 (385)
T ss_pred             CcEEEECCcccccccHH-HHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHH---HhCCCCcccccccceec
Confidence            34555555555555554 56899999998755444444433333  44456553332111   11122111111246789


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEc----CCCCCCcCHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTT----TGCKDIIRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~a----tgt~~lI~~e~  421 (718)
                      .||||||||+|+||+.+|++|++|||+|+++|+.+.........|.. ..+++|++++||+|+++    ..|+++|+++.
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~  270 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADV  270 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHH
Confidence            99999999999999999999999999999998765332222233544 46899999999999986    34789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccC
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHE  492 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~  492 (718)
                      |++||+|++|||+|||. .+|.++|.+.         ++|++..+|..         ...++      +-.+|++.|||.
T Consensus       271 l~~mk~ga~lIN~aRG~-iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp---------~d~pL------~~~pNvilTPHi  334 (385)
T PRK07574        271 LSRMKRGSYLVNTARGK-IVDRDAVVRALESGHLAGYAGDVWFPQPAP---------ADHPW------RTMPRNGMTPHI  334 (385)
T ss_pred             HhcCCCCcEEEECCCCc-hhhHHHHHHHHHhCCccEEEEecCCCCCCC---------CCChH------HhCCCeEECCcc
Confidence            99999999999999996 4676665542         24555544422         11112      223789999997


Q ss_pred             Ccccccc
Q psy7896         493 APTLLVH  499 (718)
Q Consensus       493 ~a~~~~Y  499 (718)
                      +..+...
T Consensus       335 ag~T~e~  341 (385)
T PRK07574        335 SGTTLSA  341 (385)
T ss_pred             ccCcHHH
Confidence            7664433

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.83  E-value=1.1e-19  Score=207.32  Aligned_cols=172  Identities=19%  Similarity=0.231  Sum_probs=122.3

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|..+.+.. +++++|+.|+.+.......+..++-+  +.+.|++...+-.   .+.+.|.  +..+.+.+|
T Consensus        65 Lk~I~~~~~G~d~id~~-~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~---~~~g~W~--~~~~~g~~l  138 (526)
T PRK13581         65 LKVIGRAGVGVDNVDVP-AATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHAS---LKAGKWE--RKKFMGVEL  138 (526)
T ss_pred             CeEEEECCcccccccHH-HHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHH---HHcCCCC--ccCcccccc
Confidence            34445555555555544 66899999998764444444433334  4445655333211   1112221  123568899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l  422 (718)
                      .||||||||+|+||+.+|+++++|||+|++||+.+... .+...|+...+++|++++||+|+++    ..|+++|+++.|
T Consensus       139 ~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l  217 (526)
T PRK13581        139 YGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPE-RAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEEL  217 (526)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCChh-HHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHH
Confidence            99999999999999999999999999999998754322 2234577777999999999999986    357899999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++||+|++|||+|||. -+|.++|.+
T Consensus       218 ~~mk~ga~lIN~aRG~-~vde~aL~~  242 (526)
T PRK13581        218 AKMKPGVRIINCARGG-IIDEAALAE  242 (526)
T ss_pred             hcCCCCeEEEECCCCc-eeCHHHHHH
Confidence            9999999999999996 467666544

>PLN03139 formate dehydrogenase; Provisional

Probab=99.83  E-value=3.3e-20  Score=203.79  Aligned_cols=211  Identities=12%  Similarity=0.073  Sum_probs=139.0

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++...+-..   +.+.|........+.+|
T Consensus       122 LK~I~~~g~G~D~iDl~-aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~---~~g~W~~~~~~~~~~~L  197 (386)
T PLN03139        122 LELLLTAGIGSDHIDLP-AAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQV---VSGEWNVAGIAYRAYDL  197 (386)
T ss_pred             ccEEEECCccccccCHH-HHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHH---HhCCCccccccCCCcCC
Confidence            34455555555544444 56889999997654444444433333  34445543332111   11222111112346899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEc----CCCCCCcCHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTT----TGCKDIIRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~a----tgt~~lI~~e~  421 (718)
                      .||||||||+|+||+.+|++|++|||+|++||+.+.........|+.. .++++++++||+|+++    ..|+++|+++.
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~  277 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKER  277 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHH
Confidence            999999999999999999999999999999987654332222345544 4899999999999986    34789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccC
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHE  492 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~  492 (718)
                      |+.||+|++|||+|||. .+|.++|.+.         ++|++..+|.-               ...+.+..+|++.|||.
T Consensus       278 l~~mk~ga~lIN~aRG~-iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp---------------~d~pL~~~pNvilTPHi  341 (386)
T PLN03139        278 IAKMKKGVLIVNNARGA-IMDTQAVADACSSGHIGGYGGDVWYPQPAP---------------KDHPWRYMPNHAMTPHI  341 (386)
T ss_pred             HhhCCCCeEEEECCCCc-hhhHHHHHHHHHcCCceEEEEcCCCCCCCC---------------CCChhhcCCCeEEcccc
Confidence            99999999999999996 4676665542         24555554432               11112233799999998


Q ss_pred             Ccccccc
Q psy7896         493 APTLLVH  499 (718)
Q Consensus       493 ~a~~~~Y  499 (718)
                      +..+...
T Consensus       342 ag~t~~~  348 (386)
T PLN03139        342 SGTTIDA  348 (386)
T ss_pred             cccCHHH
Confidence            7765443

>KOG0069|consensus

Probab=99.81  E-value=2e-19  Score=192.99  Aligned_cols=209  Identities=19%  Similarity=0.148  Sum_probs=147.6

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh-hhhcc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA-KYLDI  344 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~-~~~g~  344 (718)
                      ..|.++..|.|-..+++. +++++|++|+.+.......++..+.+  +.+.|+....+-...   .++| .|.. ...|.
T Consensus        84 ~lK~i~t~~vG~D~vDl~-a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~---~g~w-~~~~~~~~g~  158 (336)
T KOG0069|consen   84 NLKLIVTMSVGYDHVDLE-AARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVR---NGGW-GWAGGWPLGY  158 (336)
T ss_pred             CeeEEEEeecccchhhHH-HHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhh---cCCc-cccCCccccc
Confidence            347777777777666665 67999999998876666655544443  344454433321111   1122 1122 23478


Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGE  420 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e  420 (718)
                      .+.||||||+|+|+||+.+|++|++||+.+.++.+.+.+..++...+.+..++++++++||+||++    ..|+|+||++
T Consensus       159 ~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~  238 (336)
T KOG0069|consen  159 DLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFVDIEELLANSDVIVVNCPLTKETRHLINKK  238 (336)
T ss_pred             cccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhcccccCHHHHHhhCCEEEEecCCCHHHHHHhhHH
Confidence            899999999999999999999999999878887776665555545555678999999999999986    3578999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHH----HHhcc-----ccceeeecCCcccCccccchhhHHHHhhhccccccccccccc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVS----WLDKN-----AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIH  491 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~----aL~~~-----~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h  491 (718)
                      .|++||+|++|||+|||. -+|.+    +|.+.     ++|+++.+|.+          .+.++..      .|++.+||
T Consensus       239 ~~~~mk~g~vlVN~aRG~-iide~~l~eaL~sG~i~~aGlDVf~~EP~~----------~~~l~~~------dnvv~~PH  301 (336)
T KOG0069|consen  239 FIEKMKDGAVLVNTARGA-IIDEEALVEALKSGKIAGAGLDVFEPEPPV----------DHPLLTL------DNVVILPH  301 (336)
T ss_pred             HHHhcCCCeEEEeccccc-cccHHHHHHHHhcCCcccccccccCCCCCC----------Ccchhcc------cceeEecc
Confidence            999999999999999996 35544    45442     46777777744          2222222      67889999


Q ss_pred             CCccccc
Q psy7896         492 EAPTLLV  498 (718)
Q Consensus       492 ~~a~~~~  498 (718)
                      .+.++..
T Consensus       302 igs~t~~  308 (336)
T KOG0069|consen  302 IGSATLE  308 (336)
T ss_pred             cccCcHH
Confidence            8766533

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.77  E-value=2.6e-18  Score=185.71  Aligned_cols=221  Identities=13%  Similarity=0.045  Sum_probs=139.9

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+.. .++++|+.|+.+.......+..++-+  +.+.|++....-.   ++.+.|. |.....+.+|
T Consensus        70 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~~~~~-w~~~~~~~~l  144 (330)
T PRK12480         70 IKQIAQRTAGFDMYDLD-LAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERR---VQAHDFT-WQAEIMSKPV  144 (330)
T ss_pred             ceEEEecccccchhhHH-HHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHH---HHhCCcc-cccccCcccc
Confidence            34555566666666554 66889999998765444444444434  4445665332211   1111121 2223457899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCC----CCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTG----CKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atg----t~~lI~~e~l  422 (718)
                      +|++|||||+|+||+.+|++|++||++|++||+++.......   ....++++++++||+|+++..    |.++++++.|
T Consensus       145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~~~~~~~~---~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l  221 (330)
T PRK12480        145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFL---TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMF  221 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCChhHhhhhh---hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHH
Confidence            999999999999999999999999999999998764322110   123479999999999998732    5689999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHH-------HhhhcccccccccccccCCcc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEAL-------LATCNSLFKYSLVNTIHEAPT  495 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal-------~n~~~~~~~~nlv~~~h~~a~  495 (718)
                      +.||+|++|||+|||. .+|.++|.+..-+.......+||++.|...+.++.       ......+-.+|++.|||.+..
T Consensus       222 ~~mk~gavlIN~aRG~-~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~  300 (330)
T PRK12480        222 DHVKKGAILVNAARGA-VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFF  300 (330)
T ss_pred             hcCCCCcEEEEcCCcc-ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCccccc
Confidence            9999999999999996 57776665531111111223344444432111000       000012233799999998766


Q ss_pred             ccc
Q psy7896         496 LLV  498 (718)
Q Consensus       496 ~~~  498 (718)
                      +..
T Consensus       301 t~~  303 (330)
T PRK12480        301 SDE  303 (330)
T ss_pred             HHH
Confidence            533

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.76  E-value=3e-18  Score=183.29  Aligned_cols=100  Identities=17%  Similarity=0.274  Sum_probs=85.6

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc--eecCHHHHhccCcEEEEc----CCCCC
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--EVTTMEEAAKEGGIFVTT----TGCKD  415 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~--~v~~Leell~~aDiIi~a----tgt~~  415 (718)
                      .+.+|.||||||||+|+||+.+|+++++|||+|+++++.+..      .|.  ...++++++++||+|+++    +.|++
T Consensus       116 ~~~~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~  189 (303)
T PRK06436        116 PTKLLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRG  189 (303)
T ss_pred             CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhc
Confidence            467999999999999999999999999999999999876432      122  146899999999999986    45899


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +|+++.|++||+|++|||+|||. -+|.++|.+
T Consensus       190 li~~~~l~~mk~ga~lIN~sRG~-~vd~~aL~~  221 (303)
T PRK06436        190 MINSKMLSLFRKGLAIINVARAD-VVDKNDMLN  221 (303)
T ss_pred             CcCHHHHhcCCCCeEEEECCCcc-ccCHHHHHH
Confidence            99999999999999999999996 467666654

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.76  E-value=3.6e-18  Score=183.37  Aligned_cols=147  Identities=14%  Similarity=-0.005  Sum_probs=103.6

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCc
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDII  417 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI  417 (718)
                      .+.+++||||||||+|+||+.+|++|++|||+|+++++.+..... ........++++++++||+|+++    +.|+++|
T Consensus       130 ~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~-~~~~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li  208 (312)
T PRK15469        130 PEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPG-VQSFAGREELSAFLSQTRVLINLLPNTPETVGII  208 (312)
T ss_pred             CCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCC-ceeecccccHHHHHhcCCEEEECCCCCHHHHHHh
Confidence            356899999999999999999999999999999999876532111 01112345899999999999986    3478999


Q ss_pred             CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccc
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTL  496 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~  496 (718)
                      +++.|++||+|++|||+|||. -+|.++|.+..-+.......+||++.|..      ......+..+|++.|||.+..+
T Consensus       209 ~~~~l~~mk~ga~lIN~aRG~-vVde~aL~~aL~~g~i~gaalDVf~~EPl------~~~~pl~~~~nvi~TPHiag~t  280 (312)
T PRK15469        209 NQQLLEQLPDGAYLLNLARGV-HVVEDDLLAALDSGKVKGAMLDVFSREPL------PPESPLWQHPRVAITPHVAAVT  280 (312)
T ss_pred             HHHHHhcCCCCcEEEECCCcc-ccCHHHHHHHHhcCCeeeEEecCCCCCCC------CCCChhhcCCCeEECCcCCCCc
Confidence            999999999999999999996 47776665531111111122334333321      1111223348999999977654

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.76  E-value=8.1e-18  Score=181.95  Aligned_cols=213  Identities=14%  Similarity=0.096  Sum_probs=138.8

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA  347 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~  347 (718)
                      |-|...|.|..+.+.. +++++|+.|+.+.......+..++-+  +.+.|++...+-..   +.+.|. |.....+.+|.
T Consensus        71 k~I~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~---~~~~~~-~~~~~~~~~l~  145 (332)
T PRK08605         71 KQIAQRSAGFDTYDLE-LATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKV---REHDFR-WEPPILSRSIK  145 (332)
T ss_pred             eEEEEcccccchhhHH-HHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHH---HhCCcc-cccccccceeC
Confidence            4455566666666655 67899999998765444444444444  34445543322111   111121 22334578999


Q ss_pred             CcEEEEEecChhHHHHHHHH-HhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSL-RLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTT----GCKDIIRGEH  421 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l-~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~at----gt~~lI~~e~  421 (718)
                      |++|||||+|+||+.+|++| ++||++|+++|+++.....   .+... .++++++++||+|+++.    .++++++.+.
T Consensus       146 g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~---~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~  222 (332)
T PRK08605        146 DLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAA---TYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADL  222 (332)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCccHhHH---hhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHH
Confidence            99999999999999999999 7999999999877643321   22333 48999999999999863    4688999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCcccc----chhhHHHHhhhcccccccccc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTK----HLTTEALLATCNSLFKYSLVN  488 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~----~~~~eal~n~~~~~~~~nlv~  488 (718)
                      ++.||+|++|||+|||. .+|.++|.+.         ++|+++.+|.+.+..+..    ....+++      +-.+|++.
T Consensus       223 l~~mk~gailIN~sRG~-~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L------~~~~nvil  295 (332)
T PRK08605        223 FKHFKKGAVFVNCARGS-LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESL------INREDVIL  295 (332)
T ss_pred             HhcCCCCcEEEECCCCc-ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHH------hcCCCEEE
Confidence            99999999999999996 5776665542         245555554221111100    0011112      22379999


Q ss_pred             cccCCcccc
Q psy7896         489 TIHEAPTLL  497 (718)
Q Consensus       489 ~~h~~a~~~  497 (718)
                      |||.+..+.
T Consensus       296 TPHia~~t~  304 (332)
T PRK08605        296 TPHIAFYTD  304 (332)
T ss_pred             CCcccccHH
Confidence            999876643

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.31  E-value=2.5e-11  Score=129.30  Aligned_cols=109  Identities=17%  Similarity=0.313  Sum_probs=89.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec---CHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT---TMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~---~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+++|++++|+|+|+||+.+|+.|+++|++|+++++++.+...+...|+...   +++++++++|+|+.+++. .++++
T Consensus       146 ~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~-~ii~~  224 (287)
T TIGR02853       146 DFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPA-LVLTA  224 (287)
T ss_pred             CCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCCh-HHhCH
Confidence            56899999999999999999999999999999999988755433333455433   467789999999998765 48899


Q ss_pred             HHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896         420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE  452 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~  452 (718)
                      +.++.||++++++|++....+.|.++.++.+..
T Consensus       225 ~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~  257 (287)
T TIGR02853       225 DVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIK  257 (287)
T ss_pred             HHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCE
Confidence            999999999999999998777888766665543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.17  E-value=5.8e-11  Score=127.73  Aligned_cols=95  Identities=25%  Similarity=0.334  Sum_probs=80.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC---CCCCCcCHH
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT---GCKDIIRGE  420 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at---gt~~lI~~e  420 (718)
                      ..|+||||||||+|+||+++|++|+++|++|+++++.+.....+...|+.+.+++|+++.||+|+++.   .++++++.+
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd~~t~~V~~~e   91 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPDEQQAHVYKAE   91 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCChHHHHHHHHH
Confidence            46899999999999999999999999999999997543332334456888889999999999999874   457889989


Q ss_pred             HHhcCCCCeEEEEcCCCC
Q psy7896         421 HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd  438 (718)
                      .++.||+|++|+..-.|+
T Consensus        92 il~~MK~GaiL~f~hgfn  109 (335)
T PRK13403         92 VEENLREGQMLLFSHGFN  109 (335)
T ss_pred             HHhcCCCCCEEEECCCcc
Confidence            999999999999876654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.03  E-value=3.2e-09  Score=113.71  Aligned_cols=104  Identities=17%  Similarity=0.280  Sum_probs=84.8

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec---CHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT---TMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~---~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +..+.|++|+|+|+|.+|+.+++.|+++|++|+++++++....++...|+...   ++.+.++++|+|+.+++. .++++
T Consensus       147 ~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-~~i~~  225 (296)
T PRK08306        147 PITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-LVLTK  225 (296)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-hhhhH
Confidence            46788999999999999999999999999999999998765444555676654   456788999999998764 57899


Q ss_pred             HHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         420 EHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      +.++.|+++++++|++......|.++-+
T Consensus       226 ~~l~~~~~g~vIIDla~~pggtd~~~a~  253 (296)
T PRK08306        226 EVLSKMPPEALIIDLASKPGGTDFEYAE  253 (296)
T ss_pred             HHHHcCCCCcEEEEEccCCCCcCeeehh
Confidence            9999999999999998755445554333

>KOG0067|consensus

Probab=98.66  E-value=4.2e-08  Score=106.12  Aligned_cols=207  Identities=18%  Similarity=0.156  Sum_probs=130.3

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccc---------ccc--chh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKL---------TKL--TED  337 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~---------~~~--~~~  337 (718)
                      -+.++-||+|....++- ++...|+-|+....+....+......          +++.+-++.         +.+  ...
T Consensus        96 lRv~~rig~g~dn~dik-aAseL~iavC~ip~~~Ve~~a~stl~----------hIl~l~rrntw~cq~l~eg~~~q~~~  164 (435)
T KOG0067|consen   96 LRVIVRIGSGYDNIDIK-AASELGIAVCNIPSDAVEETADSTLC----------HILNLYRRNTWLCQALREGTCTQGLE  164 (435)
T ss_pred             hceeeeeccccchhhhh-hhhhheeeeecccchhHHHHHHHHHH----------HHHhhhcccchhhhhhcccceeechh
Confidence            45566688888877774 56788888876554444332222111          122111111         011  001


Q ss_pred             hhh---hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEc---
Q psy7896         338 QAK---YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTT---  410 (718)
Q Consensus       338 ~~~---~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~a---  410 (718)
                      +..   .....++|.++|++|+|++|++++.++++||-.|+.||..-..-++ ...|++ +-++.+++-++|.++.+   
T Consensus       165 q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~~g~~-~~lg~~rVytlqd~~~~sd~~S~hc~~  243 (435)
T KOG0067|consen  165 QVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLIDGID-KSLGLQRVYTLQDLLYQSDCVSLHCNL  243 (435)
T ss_pred             hhhhhhhccccccccceeeeccccccceehhhhhcccceeeeecchhhhhhh-hhcccceecccchhhhhccceeeeccc
Confidence            111   1134578999999999999999999999999999999644322222 223444 44799999999999986   


Q ss_pred             -CCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccccccccc
Q psy7896         411 -TGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNT  489 (718)
Q Consensus       411 -tgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~  489 (718)
                       ..++++|+.-.+.+|+.|++++|++|+. -+|.++|... ++...++-.- ++    .+.+-++.+      .+|.+++
T Consensus       244 ~~~~h~lin~~tikqm~qGaflvnta~gg-lvdekaLaqa-Lk~G~i~~aa-~~----~~~~~~l~d------~pn~ic~  310 (435)
T KOG0067|consen  244 NEHNHELINDFTIKQMRQGAFLVNTARGG-LVDEKALAQA-LKSGRIRGAA-PR----SFKQGPLKD------APNLICT  310 (435)
T ss_pred             CcccccccccccceeecccceEeeecccc-cCChHHHHhh-hccCceeccc-Cc----ccccccccC------CCCCCCC
Confidence             4578899999999999999999999985 5787777764 3333332110 00    122222222      2788888


Q ss_pred             ccCCccccccc
Q psy7896         490 IHEAPTLLVHL  500 (718)
Q Consensus       490 ~h~~a~~~~Y~  500 (718)
                      +|..+.....+
T Consensus       311 ~~ta~~~e~~~  321 (435)
T KOG0067|consen  311 PHTAWYSEAAS  321 (435)
T ss_pred             cccchhhHHHH
Confidence            88776654443

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.58  E-value=1.7e-07  Score=95.05  Aligned_cols=94  Identities=23%  Similarity=0.306  Sum_probs=73.4

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-CceecCHHHHhc-cCcEEEEcCCCCCCcCH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-GYEVTTMEEAAK-EGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-G~~v~~Leell~-~aDiIi~atgt~~lI~~  419 (718)
                      .+.+++||+++|+|+|++|+.+|+.|..+|++|+++|+++.+..+.... |....+.++++. ++|+++.++.. ++|+.
T Consensus        22 ~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~~-~~I~~  100 (200)
T cd01075          22 GTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCALG-GVIND  100 (200)
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEecccc-cccCH
Confidence            4678999999999999999999999999999999999887543332222 556667777765 79999977553 69999


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.++.|+.. +++--+.+
T Consensus       101 ~~~~~l~~~-~v~~~AN~  117 (200)
T cd01075         101 DTIPQLKAK-AIAGAANN  117 (200)
T ss_pred             HHHHHcCCC-EEEECCcC
Confidence            999999865 44444443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.54  E-value=2.4e-07  Score=98.78  Aligned_cols=81  Identities=23%  Similarity=0.359  Sum_probs=71.6

Q ss_pred             hhcccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||.|.+ |+.+|.+|...|+.|++++..             ..++.+.+++||||++++|..++|+.
T Consensus       151 ~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~-------------t~~l~~~~~~ADIVV~avG~~~~i~~  217 (285)
T PRK14189        151 SIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSK-------------TRDLAAHTRQADIVVAAVGKRNVLTA  217 (285)
T ss_pred             HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCC-------------CCCHHHHhhhCCEEEEcCCCcCccCH
Confidence            4567899999999999998 999999999999999998532             23678899999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                         +.+|+|+++||+|..
T Consensus       218 ---~~ik~gavVIDVGin  232 (285)
T PRK14189        218 ---DMVKPGATVIDVGMN  232 (285)
T ss_pred             ---HHcCCCCEEEEcccc
Confidence               668999999999963

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.53  E-value=1.8e-07  Score=101.78  Aligned_cols=93  Identities=26%  Similarity=0.359  Sum_probs=73.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-HHHhhcCceecCHHHHhccCcEEEEcCCC---CCCcCH
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-LQASMEGYEVTTMEEAAKEGGIFVTTTGC---KDIIRG  419 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-l~a~~~G~~v~~Leell~~aDiIi~atgt---~~lI~~  419 (718)
                      ..|+||+|||||+|++|+++|+.|+.+|++|+++++.+.+. ..+...|+.+.+.++++++||+|+++...   ..+++.
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~~~V~~~   92 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQAEVYEE   92 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHHHHHHHH
Confidence            35789999999999999999999999999999887654332 23445688888999999999999997542   345555


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+..|++|++|+ .++|
T Consensus        93 ~I~~~Lk~g~iL~-~a~G  109 (330)
T PRK05479         93 EIEPNLKEGAALA-FAHG  109 (330)
T ss_pred             HHHhcCCCCCEEE-ECCC
Confidence            6677899999884 4444

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.50  E-value=3.8e-07  Score=100.71  Aligned_cols=91  Identities=19%  Similarity=0.299  Sum_probs=73.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCcee-------cCHHHHhccCcEEEEcC---C--
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEV-------TTMEEAAKEGGIFVTTT---G--  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v-------~~Leell~~aDiIi~at---g--  412 (718)
                      +.+++|+|||+|.+|+.+++.|+++|++|+++|+++.+..... ..|..+       ..+.+.++++|+|++++   +  
T Consensus       165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~  244 (370)
T TIGR00518       165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAK  244 (370)
T ss_pred             CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCC
Confidence            5778999999999999999999999999999998876533221 122211       24677889999999875   3  


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +..+|+++.++.||++++++|+|-
T Consensus       245 ~p~lit~~~l~~mk~g~vIvDva~  268 (370)
T TIGR00518       245 APKLVSNSLVAQMKPGAVIVDVAI  268 (370)
T ss_pred             CCcCcCHHHHhcCCCCCEEEEEec
Confidence            356799999999999999999984

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.49  E-value=1.3e-06  Score=100.12  Aligned_cols=162  Identities=20%  Similarity=0.197  Sum_probs=105.3

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHH-------HHHHHHHhcccccccchhhhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV-------AALHLEHLGVKLTKLTEDQAK  340 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i-------~~~~l~~lgv~~~~~~~~~~~  340 (718)
                      .|+.+.-.=+-.-+....+.|.++|+.+.-+|.-|.-...-..+.+...-++       ++.+  ++++.+...    ..
T Consensus        85 ~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~Av~~aa~--~~~~~~~g~----~t  158 (509)
T PRK09424         85 EGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRAVIEAAH--EFGRFFTGQ----IT  158 (509)
T ss_pred             CCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHHHHHHHH--HhcccCCCc----ee
Confidence            4544444444445788889999999999888876631111122222221111       1111  011111100    00


Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--CH---------------------
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--TM---------------------  397 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--~L---------------------  397 (718)
                      . .....|.+|.|+|.|.||...++.++.+|++|+++|.+|.+..++...|..+.  +.                     
T Consensus       159 a-aG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~  237 (509)
T PRK09424        159 A-AGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKA  237 (509)
T ss_pred             c-cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHH
Confidence            0 11456999999999999999999999999999999999987666655665522  10                     


Q ss_pred             -----HHHhccCcEEEEcCCCC-----CCcCHHHHhcCCCCeEEEEcCC
Q psy7896         398 -----EEAAKEGGIFVTTTGCK-----DIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       398 -----eell~~aDiIi~atgt~-----~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                           .+.++.+|+++.+++..     .+|.++.++.||+|++++++|-
T Consensus       238 ~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        238 EMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence                 11125799999998753     3778999999999999999986

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.49  E-value=2.1e-07  Score=91.44  Aligned_cols=91  Identities=26%  Similarity=0.321  Sum_probs=67.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc-cHHHHhhcCceecCHHHHhccCcEEEEcCCC---CCCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI-NALQASMEGYEVTTMEEAAKEGGIFVTTTGC---KDIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~-~al~a~~~G~~v~~Leell~~aDiIi~atgt---~~lI~~e~  421 (718)
                      |++|+|.|||||..|++.|..||.-|.+|++..+... ....|..+||++.+.+|+++.+|+|++.+..   ..+..++.
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I   81 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDEVQPEVYEEEI   81 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HHHHHHHHHHHH
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChHHHHHHHHHHH
Confidence            6899999999999999999999999999999876555 4456778999999999999999999987542   33455566


Q ss_pred             HhcCCCCeEEEEcCC
Q psy7896         422 FLQMRDDAIVCNIGH  436 (718)
Q Consensus       422 l~~MK~gAiLIN~GR  436 (718)
                      ...||+|..|+-.--
T Consensus        82 ~p~l~~G~~L~fahG   96 (165)
T PF07991_consen   82 APNLKPGATLVFAHG   96 (165)
T ss_dssp             HHHS-TT-EEEESSS
T ss_pred             HhhCCCCCEEEeCCc
Confidence            679999998885433

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.49  E-value=1.7e-06  Score=98.86  Aligned_cols=162  Identities=19%  Similarity=0.199  Sum_probs=103.6

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHH-------HHHHHHHhcccccccchhhhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV-------AALHLEHLGVKLTKLTEDQAK  340 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i-------~~~~l~~lgv~~~~~~~~~~~  340 (718)
                      .|+.+.-.=+-.-+....+.|.++++.+.-+|.-|.-...-..+.+...-++       ++.+  ++++.+...    ..
T Consensus        84 ~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAGy~Avi~Aa~--~lgr~~~g~----~t  157 (511)
T TIGR00561        84 AGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAGYRAIIEAAH--EFGRFFTGQ----IT  157 (511)
T ss_pred             CCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHHHHHHHHHHH--HhhhhcCCc----ee
Confidence            3444433333334677788999999888888866621111112222211111       1111  111111100    00


Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecC------------------------
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTT------------------------  396 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~------------------------  396 (718)
                      - ...+.+.+|.|+|+|.+|...++.++++|++|+++|.++.+...+...|..+..                        
T Consensus       158 a-ag~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~  236 (511)
T TIGR00561       158 A-AGKVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAA  236 (511)
T ss_pred             c-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHH
Confidence            0 014567999999999999999999999999999999888765444444544311                        


Q ss_pred             ----HHHHhccCcEEEEcC---C--CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         397 ----MEEAAKEGGIFVTTT---G--CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       397 ----Leell~~aDiIi~at---g--t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                          +.+.++++|+++++.   |  .+.+++++.++.||+|+++||++-
T Consensus       237 ~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~  285 (511)
T TIGR00561       237 EMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAA  285 (511)
T ss_pred             HHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeee
Confidence                345578899999875   4  445899999999999999999975

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.39  E-value=1e-06  Score=95.36  Aligned_cols=111  Identities=24%  Similarity=0.352  Sum_probs=78.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecC-CccHHHHhhcCceecCHHHHhccCcEEEEcCCCC---CCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID-PINALQASMEGYEVTTMEEAAKEGGIFVTTTGCK---DIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~d-p~~al~a~~~G~~v~~Leell~~aDiIi~atgt~---~lI~~e~  421 (718)
                      |+||+|+|||+|++|+++|+.|+..|.+|+++++. +.....+...|+.+.+..+++++||+|+++....   ..+.++.
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~~~~~v~~ei   80 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEVQHEVYEAEI   80 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHhHHHHHHHHH
Confidence            57999999999999999999999999998876543 2222333356888888899999999999986543   2233445


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhc---cccceeeecCCc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDK---NAVEKVNVKPQV  460 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~---~~l~~~~v~P~V  460 (718)
                      ...|+++. ++.+++|   +++..+..   ...++..+.||.
T Consensus        81 ~~~l~~g~-iVs~aaG---~~i~~~~~~~~~~~~VvrvmPn~  118 (314)
T TIGR00465        81 QPLLKEGK-TLGFSHG---FNIHFVQIVPPKDVDVVMVAPKG  118 (314)
T ss_pred             HhhCCCCc-EEEEeCC---ccHhhccccCCCCCcEEEECCCC
Confidence            56788886 6667776   23333332   234566677776

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.38  E-value=1.2e-06  Score=94.20  Aligned_cols=80  Identities=28%  Similarity=0.294  Sum_probs=71.0

Q ss_pred             hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|+|||.| .+|+.+|.+|...|+.|+++++..             .++.+++++||+|+++.|..+.+..
T Consensus       152 ~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t-------------~~l~e~~~~ADIVIsavg~~~~v~~  218 (301)
T PRK14194        152 DTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRS-------------TDAKALCRQADIVVAAVGRPRLIDA  218 (301)
T ss_pred             HhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhcCCEEEEecCChhcccH
Confidence            34778999999999997 899999999999999999997543             1678899999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      ..   +|+|+++|++|.
T Consensus       219 ~~---ik~GaiVIDvgi  232 (301)
T PRK14194        219 DW---LKPGAVVIDVGI  232 (301)
T ss_pred             hh---ccCCcEEEEecc
Confidence            65   899999999995

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.37  E-value=1.3e-06  Score=93.44  Aligned_cols=81  Identities=23%  Similarity=0.377  Sum_probs=71.5

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||.|. +|+.+|..|...|++|++++...             .++.+.+++||+|+.++|..++|++
T Consensus       151 ~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t-------------~~l~~~~~~ADIVIsAvg~p~~i~~  217 (286)
T PRK14175        151 HADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS-------------KDMASYLKDADVIVSAVGKPGLVTK  217 (286)
T ss_pred             HcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHHhhCCEEEECCCCCcccCH
Confidence            346689999999999999 99999999999999999997532             2578899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   +|+|+++|++|..
T Consensus       218 ~~---vk~gavVIDvGi~  232 (286)
T PRK14175        218 DV---VKEGAVIIDVGNT  232 (286)
T ss_pred             HH---cCCCcEEEEcCCC
Confidence            64   6999999999974

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.36  E-value=3.5e-07  Score=102.35  Aligned_cols=94  Identities=20%  Similarity=0.201  Sum_probs=74.2

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEE------EecCCccHHHHhhcCceecCHHHHhccCcEEEEcCC--CCC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV------TEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTG--CKD  415 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv------~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atg--t~~  415 (718)
                      ..|+||||+|||||.||++-|..++..|.+|++      +|.+......+..+|+.+.+++|++++||+|+..+.  .++
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADvVviLlPDt~q~  111 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHS  111 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCEEEEcCChHHHH
Confidence            468999999999999999888888888998884      332233333455679999999999999999998633  256


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+..+.+..||+|+.|.=.--|
T Consensus       112 ~v~~~i~p~LK~Ga~L~fsHGF  133 (487)
T PRK05225        112 DVVRAVQPLMKQGAALGYSHGF  133 (487)
T ss_pred             HHHHHHHhhCCCCCEEEecCCc
Confidence            6778889999999999865433

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=98.35  E-value=1e-06  Score=86.11  Aligned_cols=90  Identities=20%  Similarity=0.283  Sum_probs=66.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----C-cCHHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----I-IRGEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----l-I~~e~l  422 (718)
                      ++||+||+|++|+.+|++|...|.+|.+||++|.+.......|.. ..++.|+++.+|+|+++..+..    + ...+.+
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~   81 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL   81 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence            589999999999999999999999999999988765555555665 4589999999999998754311    1 111256


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      +.+++|.++||++-.+
T Consensus        82 ~~l~~g~iiid~sT~~   97 (163)
T PF03446_consen   82 AGLRPGKIIIDMSTIS   97 (163)
T ss_dssp             GGS-TTEEEEE-SS--
T ss_pred             hccccceEEEecCCcc
Confidence            7899999999998854

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.28  E-value=3.3e-06  Score=83.16  Aligned_cols=81  Identities=28%  Similarity=0.448  Sum_probs=61.2

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+.++.+|...|+.|++++...             .++.+.+++||+|+.+.|..++|..
T Consensus        29 ~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T-------------~~l~~~~~~ADIVVsa~G~~~~i~~   95 (160)
T PF02882_consen   29 YYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT-------------KNLQEITRRADIVVSAVGKPNLIKA   95 (160)
T ss_dssp             HTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS-------------SSHHHHHTTSSEEEE-SSSTT-B-G
T ss_pred             hcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC-------------CcccceeeeccEEeeeecccccccc
Confidence            356789999999999997 89999999999999999986532             3578889999999999999999987


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +   .+|+|+++||+|..
T Consensus        96 ~---~ik~gavVIDvG~~  110 (160)
T PF02882_consen   96 D---WIKPGAVVIDVGIN  110 (160)
T ss_dssp             G---GS-TTEEEEE--CE
T ss_pred             c---cccCCcEEEecCCc
Confidence            6   45999999999874

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.25  E-value=4.4e-06  Score=82.90  Aligned_cols=79  Identities=28%  Similarity=0.427  Sum_probs=68.6

Q ss_pred             cccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896         343 DIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH  421 (718)
Q Consensus       343 g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~  421 (718)
                      ..++.||+|.|||.|.+ |..+|+.|...|++|+++++..             .++.+.++++|+||++++..++|+.+.
T Consensus        39 ~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~-------------~~l~~~l~~aDiVIsat~~~~ii~~~~  105 (168)
T cd01080          39 GIDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT-------------KNLKEHTKQADIVIVAVGKPGLVKGDM  105 (168)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc-------------hhHHHHHhhCCEEEEcCCCCceecHHH
Confidence            35799999999999985 9999999999999999987642             256788999999999999888999875


Q ss_pred             HhcCCCCeEEEEcCCC
Q psy7896         422 FLQMRDDAIVCNIGHF  437 (718)
Q Consensus       422 l~~MK~gAiLIN~GRg  437 (718)
                         ++++.++|++|.-
T Consensus       106 ---~~~~~viIDla~p  118 (168)
T cd01080         106 ---VKPGAVVIDVGIN  118 (168)
T ss_pred             ---ccCCeEEEEccCC
Confidence               5889999999985

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.24  E-value=5e-06  Score=88.77  Aligned_cols=80  Identities=26%  Similarity=0.341  Sum_probs=70.6

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||++.|||.|+ +|+.+|.+|...|+.|++++...             .++.+.+++|||++.+.|..++|..
T Consensus       152 ~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvi~avG~p~~v~~  218 (285)
T PRK10792        152 RYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT-------------KNLRHHVRNADLLVVAVGKPGFIPG  218 (285)
T ss_pred             HcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC-------------CCHHHHHhhCCEEEEcCCCcccccH
Confidence            346789999999999999 89999999999999999996431             3688899999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                         +.+|+|+++|++|-
T Consensus       219 ---~~vk~gavVIDvGi  232 (285)
T PRK10792        219 ---EWIKPGAIVIDVGI  232 (285)
T ss_pred             ---HHcCCCcEEEEccc
Confidence               45699999999993

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.23  E-value=3.7e-06  Score=89.76  Aligned_cols=80  Identities=26%  Similarity=0.321  Sum_probs=70.6

Q ss_pred             hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||.| .+|+.+|.+|...||.|++++...             .++.+.+++||+++.++|..++++.
T Consensus       150 ~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t-------------~~l~~~~~~ADIvV~AvG~p~~i~~  216 (285)
T PRK14191        150 HYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT-------------KDLSFYTQNADIVCVGVGKPDLIKA  216 (285)
T ss_pred             HhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc-------------HHHHHHHHhCCEEEEecCCCCcCCH
Confidence            34678999999999999 789999999999999999985422             2467889999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.+   |+|+++|++|.
T Consensus       217 ~~v---k~GavVIDvGi  230 (285)
T PRK14191        217 SMV---KKGAVVVDIGI  230 (285)
T ss_pred             HHc---CCCcEEEEeec
Confidence            766   99999999996

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=5e-06  Score=88.88  Aligned_cols=81  Identities=28%  Similarity=0.414  Sum_probs=69.8

Q ss_pred             hcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHH
Q psy7896         342 LDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGE  420 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e  420 (718)
                      .+.++.||+|.|||.|. +|+.+|..|...|++|+++++.             ..++.+.++++|+||.++|..+.|+.+
T Consensus       153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~-------------t~~L~~~~~~aDIvI~AtG~~~~v~~~  219 (283)
T PRK14192        153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSR-------------TQNLPELVKQADIIVGAVGKPELIKKD  219 (283)
T ss_pred             cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCC-------------chhHHHHhccCCEEEEccCCCCcCCHH
Confidence            46789999999999998 9999999999999999999752             125677789999999999988888875


Q ss_pred             HHhcCCCCeEEEEcCCCC
Q psy7896         421 HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd  438 (718)
                      .   +|+|++++++|...
T Consensus       220 ~---lk~gavViDvg~n~  234 (283)
T PRK14192        220 W---IKQGAVVVDAGFHP  234 (283)
T ss_pred             H---cCCCCEEEEEEEee
Confidence            4   79999999998653

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.22  E-value=4.5e-06  Score=89.15  Aligned_cols=80  Identities=25%  Similarity=0.417  Sum_probs=70.9

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||.|+ +|+.+|.+|...||.|++++...             .++.+..++||+++.+.|..++|+.
T Consensus       157 ~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvv~AvG~p~~i~~  223 (287)
T PRK14176        157 EYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT-------------DDLKKYTLDADILVVATGVKHLIKA  223 (287)
T ss_pred             HcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC-------------CCHHHHHhhCCEEEEccCCccccCH
Confidence            346789999999999999 89999999999999999996421             3578889999999999999999987


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +   .+|+|+++|++|.
T Consensus       224 ~---~vk~gavVIDvGi  237 (287)
T PRK14176        224 D---MVKEGAVIFDVGI  237 (287)
T ss_pred             H---HcCCCcEEEEecc
Confidence            6   6799999999996

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.20  E-value=7.6e-06  Score=78.98  Aligned_cols=82  Identities=18%  Similarity=0.218  Sum_probs=71.0

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|+|-+. +|+.+|.+|...|+.|++++.+.             .++++.+++||+|+++++..++|+.
T Consensus        21 ~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t-------------~~l~~~v~~ADIVvsAtg~~~~i~~   87 (140)
T cd05212          21 KEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT-------------IQLQSKVHDADVVVVGSPKPEKVPT   87 (140)
T ss_pred             HcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCCCCccCH
Confidence            347889999999999998 69999999999999999997532             2678889999999999998899997


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.   +|+|++++++|..-
T Consensus        88 ~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          88 EW---IKPGATVINCSPTK  103 (140)
T ss_pred             HH---cCCCCEEEEcCCCc
Confidence            54   69999999998753

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=98.20  E-value=6.2e-06  Score=83.50  Aligned_cols=92  Identities=22%  Similarity=0.268  Sum_probs=71.6

Q ss_pred             cccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCcee---cC----HHHHhccCcEEEEcCCC
Q psy7896         343 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEV---TT----MEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       343 g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v---~~----Leell~~aDiIi~atgt  413 (718)
                      +.++.||+|.|||-++ +|+-+|.+|...||.|+++|++....... .......   .+    +.+.+++|||||.+.|.
T Consensus        57 ~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~  136 (197)
T cd01079          57 GNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPS  136 (197)
T ss_pred             CCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEccCC
Confidence            5689999999999998 69999999999999999997654322110 0000111   13    67899999999999999


Q ss_pred             CCC-cCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDI-IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~l-I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .++ |+.+.   .|+|+++||+|-.
T Consensus       137 ~~~~i~~d~---ik~GavVIDVGi~  158 (197)
T cd01079         137 PNYKVPTEL---LKDGAICINFASI  158 (197)
T ss_pred             CCCccCHHH---cCCCcEEEEcCCC
Confidence            998 89765   4899999999975

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.14  E-value=7e-06  Score=80.76  Aligned_cols=93  Identities=23%  Similarity=0.326  Sum_probs=67.2

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc---ee------------------------cC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY---EV------------------------TT  396 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~---~v------------------------~~  396 (718)
                      ..+...+|.|+|.|++|+..++.|.++|++|++.|..+....+....+.   .+                        ..
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESN   95 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHH
Confidence            3567799999999999999999999999999999987754322221221   12                        13


Q ss_pred             HHHHhccCcEEEEc-----CCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         397 MEEAAKEGGIFVTT-----TGCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       397 Leell~~aDiIi~a-----tgt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +.+.++.+|+|+.+     .....+|+++.++.||++.++++++-
T Consensus        96 f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   96 FAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETTG
T ss_pred             HHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEEe
Confidence            56788899999874     34567999999999999999999864

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.14  E-value=7.9e-06  Score=87.28  Aligned_cols=81  Identities=30%  Similarity=0.382  Sum_probs=70.5

Q ss_pred             hhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|+|||. |.+|+.+|.+|...|+.|+++...             ..++.+.+++||+|+++.|..+++..
T Consensus       151 ~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~-------------t~~l~~~~~~ADIVI~avg~~~~v~~  217 (284)
T PRK14179        151 EYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSR-------------TRNLAEVARKADILVVAIGRGHFVTK  217 (284)
T ss_pred             HhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCC-------------CCCHHHHHhhCCEEEEecCccccCCH
Confidence            3577899999999999 889999999999999999998321             12678899999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   +|+|+++|++|-.
T Consensus       218 ~~---ik~GavVIDvgin  232 (284)
T PRK14179        218 EF---VKEGAVVIDVGMN  232 (284)
T ss_pred             HH---ccCCcEEEEecce
Confidence            54   8999999999863

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=98.13  E-value=7.7e-06  Score=86.85  Aligned_cols=90  Identities=16%  Similarity=0.221  Sum_probs=70.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCcC--HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DIIR--GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI~--~e~  421 (718)
                      ++|||||+|.+|..+|+.+...|.+|+++|+++.+.......|... .+.+++++++|+|+++..+.    .++.  ...
T Consensus         3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~   82 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI   82 (296)
T ss_pred             ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence            5799999999999999999999999999998876544444455544 46889999999999875432    2232  224


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..++++.+++|++...
T Consensus        83 ~~~~~~g~iiid~st~~   99 (296)
T PRK11559         83 IEGAKPGTVVIDMSSIA   99 (296)
T ss_pred             hhcCCCCcEEEECCCCC
Confidence            56789999999999875

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=7.9e-06  Score=87.20  Aligned_cols=81  Identities=30%  Similarity=0.385  Sum_probs=71.0

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+-+|.+|...|+.|++++...             .++.+.+++|||++.+.|..++|+.
T Consensus       150 ~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~~~~i~~  216 (284)
T PRK14170        150 STGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT-------------KDLPQVAKEADILVVATGLAKFVKK  216 (284)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCH
Confidence            457899999999999998 69999999999999999985421             3588899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+   |+|+++|++|..
T Consensus       217 ~~v---k~GavVIDvGin  231 (284)
T PRK14170        217 DYI---KPGAIVIDVGMD  231 (284)
T ss_pred             HHc---CCCCEEEEccCc
Confidence            654   899999999964

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=7.8e-06  Score=87.88  Aligned_cols=79  Identities=25%  Similarity=0.357  Sum_probs=69.1

Q ss_pred             hcccccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEe-cCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         342 LDIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTE-IDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       342 ~g~eL~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d-~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      .+.++.||+|+||| .|.+|+.+|++|..-|+.|++++ +.+              ++++++++||+|+++++..+.+..
T Consensus       152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~--------------~l~e~~~~ADIVIsavg~~~~v~~  217 (296)
T PRK14188        152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR--------------DLPAVCRRADILVAAVGRPEMVKG  217 (296)
T ss_pred             hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhhcch
Confidence            46689999999999 89999999999999999999995 322              478889999999999999888886


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      ..   +|+|+++|++|-.
T Consensus       218 ~~---lk~GavVIDvGin  232 (296)
T PRK14188        218 DW---IKPGATVIDVGIN  232 (296)
T ss_pred             he---ecCCCEEEEcCCc
Confidence            54   8999999999874

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.11  E-value=9.3e-06  Score=86.74  Aligned_cols=81  Identities=25%  Similarity=0.371  Sum_probs=71.6

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+.+|.+|...|+.|++++...             .++.+.+++||+++.++|..++|+.
T Consensus       151 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t-------------~~l~~~~~~ADIvI~AvG~p~~i~~  217 (284)
T PRK14190        151 EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT-------------KNLAELTKQADILIVAVGKPKLITA  217 (284)
T ss_pred             HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCCcCCH
Confidence            456789999999999998 69999999999999999986421             3688899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+   |+|+++|++|..
T Consensus       218 ~~i---k~gavVIDvGi~  232 (284)
T PRK14190        218 DMV---KEGAVVIDVGVN  232 (284)
T ss_pred             HHc---CCCCEEEEeecc
Confidence            776   899999999974

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=98.11  E-value=7.4e-06  Score=86.97  Aligned_cols=89  Identities=15%  Similarity=0.161  Sum_probs=69.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCC----CCc-C-HHHH
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCK----DII-R-GEHF  422 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~----~lI-~-~e~l  422 (718)
                      +|||||+|.+|+.+|+.+...|.+|+++|+++.+.......|.. ..+.+++++++|+|+++..+.    .++ . ...+
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~   80 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII   80 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence            48999999999999999999999999999988654443444543 457889999999999975432    122 2 2245


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      ..++++.++||++...
T Consensus        81 ~~~~~g~iivd~st~~   96 (291)
T TIGR01505        81 EGAKPGKTLVDMSSIS   96 (291)
T ss_pred             hcCCCCCEEEECCCCC
Confidence            6789999999998864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=1.3e-05  Score=85.53  Aligned_cols=81  Identities=25%  Similarity=0.400  Sum_probs=70.8

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...|+.|++++...             .++.+.+++|||++.+.|..++|+.
T Consensus       149 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T-------------~~l~~~~~~ADIvI~AvG~p~~i~~  215 (282)
T PRK14169        149 AYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT-------------RNLKQLTKEADILVVAVGVPHFIGA  215 (282)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence            457789999999999998 69999999999999999985422             3588899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   .|+|+++|++|--
T Consensus       216 ~~---vk~GavVIDvGin  230 (282)
T PRK14169        216 DA---VKPGAVVIDVGIS  230 (282)
T ss_pred             HH---cCCCcEEEEeecc
Confidence            65   5899999999963

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.08  E-value=1e-05  Score=86.17  Aligned_cols=80  Identities=26%  Similarity=0.374  Sum_probs=70.8

Q ss_pred             hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|+|.+ .+|+.+|.++..+|+.|+++..+.             .++.+.+++||+++.+.|..++|++
T Consensus       145 ~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t-------------~~L~~~~~~ADIvI~Avgk~~lv~~  211 (279)
T PRK14178        145 EYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT-------------ENLKAELRQADILVSAAGKAGFITP  211 (279)
T ss_pred             HcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh-------------hHHHHHHhhCCEEEECCCcccccCH
Confidence            34678999999999999 789999999999999999986532             3578899999999999998899998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.+   |+|+++|++|-
T Consensus       212 ~~v---k~GavVIDVgi  225 (279)
T PRK14178        212 DMV---KPGATVIDVGI  225 (279)
T ss_pred             HHc---CCCcEEEEeec
Confidence            875   99999999985

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=1.2e-05  Score=85.67  Aligned_cols=80  Identities=26%  Similarity=0.497  Sum_probs=70.4

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+.+|.+|...|+.|++++...             .++.+..++|||++.+.|..++|+.
T Consensus       150 ~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T-------------~nl~~~~~~ADIvIsAvGkp~~i~~  216 (282)
T PRK14166        150 AYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAGCVNLLRS  216 (282)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCCCcCccCH
Confidence            357789999999999998 69999999999999999986432             3588899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.   .|+|+++|++|-
T Consensus       217 ~~---vk~GavVIDvGi  230 (282)
T PRK14166        217 DM---VKEGVIVVDVGI  230 (282)
T ss_pred             HH---cCCCCEEEEecc
Confidence            65   589999999994

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=1.3e-05  Score=85.51  Aligned_cols=80  Identities=26%  Similarity=0.323  Sum_probs=69.7

Q ss_pred             hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+ .+|+.+|.+|...||.|++++...             .++.+.+++||+++.++|..++|+.
T Consensus       150 ~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T-------------~~l~~~~~~ADIvV~AvGkp~~i~~  216 (281)
T PRK14183        150 EYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT-------------KDLKAHTKKADIVIVGVGKPNLITE  216 (281)
T ss_pred             HcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------cCHHHHHhhCCEEEEecCcccccCH
Confidence            45678999999999999 589999999999999999985321             3578899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.+   |+|+++|++|-
T Consensus       217 ~~v---k~gavvIDvGi  230 (281)
T PRK14183        217 DMV---KEGAIVIDIGI  230 (281)
T ss_pred             HHc---CCCcEEEEeec
Confidence            654   89999999994

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=1.3e-05  Score=85.52  Aligned_cols=80  Identities=23%  Similarity=0.358  Sum_probs=70.5

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+.+|.+|...||.|++++...             .++.+..++|||++.+.|..++|+.
T Consensus       152 ~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T-------------~~l~~~~~~ADIvIsAvGk~~~i~~  218 (284)
T PRK14177        152 EYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT-------------QNLPSIVRQADIIVGAVGKPEFIKA  218 (284)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEeCCCcCccCH
Confidence            346789999999999998 69999999999999999996422             3678889999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.   .|+|+++|++|-
T Consensus       219 ~~---ik~gavVIDvGi  232 (284)
T PRK14177        219 DW---ISEGAVLLDAGY  232 (284)
T ss_pred             HH---cCCCCEEEEecC
Confidence            65   489999999996

>PLN02712 arogenate dehydrogenase

Probab=98.06  E-value=8.7e-06  Score=96.34  Aligned_cols=104  Identities=11%  Similarity=0.173  Sum_probs=77.2

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhc-cCcEEEEcCCC---CCC
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAK-EGGIFVTTTGC---KDI  416 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~-~aDiIi~atgt---~~l  416 (718)
                      .+.++.+++|||||+|.||+.+|+.++.+|.+|+++++++.. ..+...|.. ..++++++. .+|+|++++..   ..+
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~~~~~~v  441 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSILSTEKV  441 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCChHHHHHH
Confidence            467889999999999999999999999999999999987542 223345654 347888876 58999998653   334


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      +..-....||+++++++++... ....+.+.
T Consensus       442 i~~l~~~~lk~g~ivvDv~SvK-~~~~~~~~  471 (667)
T PLN02712        442 LKSLPFQRLKRSTLFVDVLSVK-EFPRNLFL  471 (667)
T ss_pred             HHHHHHhcCCCCcEEEECCCcc-HHHHHHHH
Confidence            4433334699999999999875 33344444

>PLN02256 arogenate dehydrogenase

Probab=98.05  E-value=6.9e-05  Score=80.91  Aligned_cols=101  Identities=12%  Similarity=0.156  Sum_probs=72.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHh-ccCcEEEEcCCCC---CCcCHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAA-KEGGIFVTTTGCK---DIIRGE  420 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell-~~aDiIi~atgt~---~lI~~e  420 (718)
                      -.+++|+|||+|.+|..+|+.++..|.+|+++++++.. ..+...|+.. .+.++++ ..+|+|++++...   .++..-
T Consensus        34 ~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl~~l  112 (304)
T PLN02256         34 SRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSILSTEAVLRSL  112 (304)
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCHHHHHHHHHhh
Confidence            36789999999999999999999999999999887632 2233345543 4677876 4799999987643   233321


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ....+++++++++++.... ...+.+.+
T Consensus       113 ~~~~l~~~~iviDv~SvK~-~~~~~~~~  139 (304)
T PLN02256        113 PLQRLKRSTLFVDVLSVKE-FPKNLLLQ  139 (304)
T ss_pred             hhhccCCCCEEEecCCchH-HHHHHHHH
Confidence            1445789999999999642 33445544

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.05  E-value=2.2e-05  Score=68.97  Aligned_cols=68  Identities=32%  Similarity=0.453  Sum_probs=60.1

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhC-CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH  421 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~f-Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~  421 (718)
                      +..+.+++++|+|.|.+|+.+++.+... +.+|.++++                         |+++.+++..+.+.+++
T Consensus        18 ~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r-------------------------di~i~~~~~~~~~~~~~   72 (86)
T cd05191          18 NKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR-------------------------DILVTATPAGVPVLEEA   72 (86)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC-------------------------CEEEEcCCCCCCchHHH
Confidence            3568999999999999999999999998 568888854                         99999999888999888


Q ss_pred             HhcCCCCeEEEEcC
Q psy7896         422 FLQMRDDAIVCNIG  435 (718)
Q Consensus       422 l~~MK~gAiLIN~G  435 (718)
                      ++.|+++.++++++
T Consensus        73 ~~~~~~~~~v~~~a   86 (86)
T cd05191          73 TAKINEGAVVIDLA   86 (86)
T ss_pred             HHhcCCCCEEEecC
Confidence            99999999999863

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=1.6e-05  Score=85.45  Aligned_cols=81  Identities=28%  Similarity=0.388  Sum_probs=70.7

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...||.|++++...             .++.+.+++||||+.+.|..++|+.
T Consensus       151 ~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~  217 (297)
T PRK14186        151 SQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT-------------QDLASITREADILVAAAGRPNLIGA  217 (297)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence            456789999999999998 69999999999999999985321             3688899999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   .|+|+++|++|-.
T Consensus       218 ~~---ik~gavVIDvGin  232 (297)
T PRK14186        218 EM---VKPGAVVVDVGIH  232 (297)
T ss_pred             HH---cCCCCEEEEeccc
Confidence            65   4899999999964

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=1.4e-05  Score=85.52  Aligned_cols=80  Identities=21%  Similarity=0.291  Sum_probs=70.1

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...||.|++++..             ..++.+.+++|||++.+.|..++|+.
T Consensus       152 ~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~-------------T~~L~~~~~~ADIvV~AvGkp~~i~~  218 (288)
T PRK14171        152 KYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSK-------------THNLSSITSKADIVVAAIGSPLKLTA  218 (288)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEccCCCCccCH
Confidence            346789999999999998 6999999999999999998642             13688899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.   .|+|+++|++|-
T Consensus       219 ~~---vk~GavVIDvGi  232 (288)
T PRK14171        219 EY---FNPESIVIDVGI  232 (288)
T ss_pred             HH---cCCCCEEEEeec
Confidence            65   489999999994

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=1.6e-05  Score=85.22  Aligned_cols=80  Identities=24%  Similarity=0.304  Sum_probs=70.6

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...||.|++++...             .++.+.+++|||++.+.|..++|+.
T Consensus       153 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T-------------~~l~~~~~~ADIvVsAvGkp~~i~~  219 (294)
T PRK14187        153 TITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT-------------RDLADYCSKADILVAAVGIPNFVKY  219 (294)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence            356789999999999998 69999999999999999986432             3578899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.+   |+|+++|++|-
T Consensus       220 ~~i---k~gaiVIDVGi  233 (294)
T PRK14187        220 SWI---KKGAIVIDVGI  233 (294)
T ss_pred             HHc---CCCCEEEEecc
Confidence            665   89999999985

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=1.7e-05  Score=84.41  Aligned_cols=81  Identities=31%  Similarity=0.422  Sum_probs=70.7

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+.+|.+|...||.|++++...             .++.+..++|||++.+.|..++|+.
T Consensus       151 ~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~  217 (278)
T PRK14172        151 SLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT-------------KNLKEVCKKADILVVAIGRPKFIDE  217 (278)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEcCCCcCccCH
Confidence            346789999999999998 69999999999999999996421             3688899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   .|+|+++|++|-.
T Consensus       218 ~~---ik~gavVIDvGin  232 (278)
T PRK14172        218 EY---VKEGAIVIDVGTS  232 (278)
T ss_pred             HH---cCCCcEEEEeecc
Confidence            66   5899999999853

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.04  E-value=1.7e-05  Score=84.80  Aligned_cols=81  Identities=27%  Similarity=0.357  Sum_probs=70.9

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+-+|.+|...|+.|++++...             .++.+.+++|||++.+.|..++++.
T Consensus       148 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T-------------~~l~~~~~~ADIvIsAvGkp~~i~~  214 (287)
T PRK14173        148 HYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT-------------QDLPAVTRRADVLVVAVGRPHLITP  214 (287)
T ss_pred             HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCH
Confidence            457789999999999998 69999999999999999985422             3578899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+   |+|+++|++|.-
T Consensus       215 ~~v---k~GavVIDVGin  229 (287)
T PRK14173        215 EMV---RPGAVVVDVGIN  229 (287)
T ss_pred             HHc---CCCCEEEEccCc
Confidence            665   999999999974

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=98.03  E-value=1.6e-05  Score=85.50  Aligned_cols=81  Identities=26%  Similarity=0.346  Sum_probs=70.8

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+-+|.+|...||.|++++..             ..++.+.+++||||+.+.|..++|+.
T Consensus       160 ~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~-------------T~nl~~~~~~ADIvv~AvGk~~~i~~  226 (299)
T PLN02516        160 RSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSR-------------TPDPESIVREADIVIAAAGQAMMIKG  226 (299)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCccCH
Confidence            347789999999999998 6999999999999999999642             13588899999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   .|+|+++|++|-.
T Consensus       227 ~~---vk~gavVIDvGin  241 (299)
T PLN02516        227 DW---IKPGAAVIDVGTN  241 (299)
T ss_pred             HH---cCCCCEEEEeecc
Confidence            65   4899999999963

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.02  E-value=1.8e-05  Score=84.50  Aligned_cols=80  Identities=24%  Similarity=0.336  Sum_probs=70.1

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+.+|.+|...||.|++++...             .++.+.+++||+++.+.|..++|+.
T Consensus       151 ~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T-------------~dl~~~~k~ADIvIsAvGkp~~i~~  217 (282)
T PRK14180        151 EYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGKPNFITA  217 (282)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHhhhcCEEEEccCCcCcCCH
Confidence            357789999999999998 69999999999999999985421             3678889999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.   .|+|+++|++|-
T Consensus       218 ~~---vk~gavVIDvGi  231 (282)
T PRK14180        218 DM---VKEGAVVIDVGI  231 (282)
T ss_pred             HH---cCCCcEEEEecc
Confidence            55   589999999986

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.02  E-value=1.4e-05  Score=97.95  Aligned_cols=113  Identities=20%  Similarity=0.208  Sum_probs=79.4

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh--hhhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASMEGYELDEEV---AALHLEHLGVKLTKL-------  334 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v--~AvaeGf~L~r~i---~~~~l~~lgv~~~~~-------  334 (718)
                      ..||+|+|||.||.|+++|+.|++.|+.|+|+|..+....  .--...|++++++   +...+..+|+++...       
T Consensus       304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG~di  383 (944)
T PRK12779        304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVGKTA  383 (944)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEeccEE
Confidence            4699999999999999999999999999999997653221  1112246666554   344555667664211       


Q ss_pred             --ch---------------hhhh-----------------hh-------c---------ccccCcEEEEEecChhHHHHH
Q psy7896         335 --TE---------------DQAK-----------------YL-------D---------IMLAGKVAVVAGYGDVGKGCA  364 (718)
Q Consensus       335 --~~---------------~~~~-----------------~~-------g---------~eL~GktVGIIG~G~IG~~vA  364 (718)
                        ..               ++.+                 +.       +         ....||+|.|||.|++|..+|
T Consensus       384 t~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~D~A  463 (944)
T PRK12779        384 TLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAA  463 (944)
T ss_pred             eHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHHHHH
Confidence              00               0000                 00       0         023689999999999999999


Q ss_pred             HHHHhCCCEEEEEec
Q psy7896         365 QSLRLFGSRVIVTEI  379 (718)
Q Consensus       365 ~~l~~fGa~Viv~d~  379 (718)
                      +.+..+|++|++..+
T Consensus       464 ~ta~R~Ga~Vtlv~r  478 (944)
T PRK12779        464 RTAKRLGGNVTIVYR  478 (944)
T ss_pred             HHHHHcCCEEEEEEe
Confidence            999999999988654

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.02  E-value=1.6e-05  Score=86.65  Aligned_cols=81  Identities=23%  Similarity=0.376  Sum_probs=70.9

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+-+|.+|...||.|+++....             .++.+..++|||+|.+.|..++|+.
T Consensus       207 ~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T-------------~nl~~~~~~ADIvIsAvGkp~~v~~  273 (345)
T PLN02897        207 RSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT-------------KDPEQITRKADIVIAAAGIPNLVRG  273 (345)
T ss_pred             HhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC-------------CCHHHHHhhCCEEEEccCCcCccCH
Confidence            457899999999999998 69999999999999999985422             3578899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+   |+|+++|++|--
T Consensus       274 d~v---k~GavVIDVGin  288 (345)
T PLN02897        274 SWL---KPGAVVIDVGTT  288 (345)
T ss_pred             HHc---CCCCEEEEcccc
Confidence            654   899999999963

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.01  E-value=1.6e-05  Score=87.03  Aligned_cols=81  Identities=26%  Similarity=0.415  Sum_probs=71.0

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+-+|.+|...||.|++++..             ..++.+.+++|||||.+.|..++|+.
T Consensus       224 ~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~-------------T~nl~~~~r~ADIVIsAvGkp~~i~~  290 (364)
T PLN02616        224 RYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSR-------------TKNPEEITREADIIISAVGQPNMVRG  290 (364)
T ss_pred             HhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCC-------------CCCHHHHHhhCCEEEEcCCCcCcCCH
Confidence            457889999999999998 6999999999999999998542             13688899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   .|+|+++|++|--
T Consensus       291 d~---vK~GAvVIDVGIn  305 (364)
T PLN02616        291 SW---IKPGAVVIDVGIN  305 (364)
T ss_pred             HH---cCCCCEEEecccc
Confidence            65   4899999999863

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=1.8e-05  Score=84.36  Aligned_cols=80  Identities=23%  Similarity=0.352  Sum_probs=70.1

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...|+.|++++...             .++.+.+++|||++.+.|..++|+.
T Consensus       150 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T-------------~nl~~~~~~ADIvI~AvGk~~~i~~  216 (282)
T PRK14182        150 EARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT-------------ADLAGEVGRADILVAAIGKAELVKG  216 (282)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEecCCcCccCH
Confidence            346789999999999998 69999999999999999985421             3578899999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +.+   |+|+++|++|-
T Consensus       217 ~~i---k~gaiVIDvGi  230 (282)
T PRK14182        217 AWV---KEGAVVIDVGM  230 (282)
T ss_pred             HHc---CCCCEEEEeec
Confidence            654   89999999995

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=2.4e-05  Score=83.69  Aligned_cols=81  Identities=23%  Similarity=0.397  Sum_probs=70.0

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      +.+.++.||+|.|||-+. +|+-+|.+|...    ++.|++++...             .++.+.+++|||++.+.|..+
T Consensus       146 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T-------------~~l~~~~~~ADIvV~AvG~p~  212 (287)
T PRK14181        146 YYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS-------------ENLTEILKTADIIIAAIGVPL  212 (287)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcC
Confidence            457789999999999998 699999999888    89999985421             368889999999999999999


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +|+.+.   .|+|+++||+|-.
T Consensus       213 ~i~~~~---ik~GavVIDvGin  231 (287)
T PRK14181        213 FIKEEM---IAEKAVIVDVGTS  231 (287)
T ss_pred             ccCHHH---cCCCCEEEEeccc
Confidence            999865   4899999999963

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.98  E-value=2.5e-05  Score=83.44  Aligned_cols=81  Identities=22%  Similarity=0.340  Sum_probs=70.6

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHh--CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCc
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRL--FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~--fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI  417 (718)
                      +.+.++.||++.|||-+. +|+-+|.+|..  .|+.|++++...             .++.+.+++||+++.+.|..++|
T Consensus       151 ~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T-------------~~l~~~~k~ADIvV~AvGkp~~i  217 (284)
T PRK14193        151 RYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT-------------RDLAAHTRRADIIVAAAGVAHLV  217 (284)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC-------------CCHHHHHHhCCEEEEecCCcCcc
Confidence            457789999999999998 69999999987  799999986432             36888999999999999999999


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+.+   |+|+++|++|..
T Consensus       218 ~~~~i---k~GavVIDvGin  234 (284)
T PRK14193        218 TADMV---KPGAAVLDVGVS  234 (284)
T ss_pred             CHHHc---CCCCEEEEcccc
Confidence            98665   899999999964

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.95  E-value=2.9e-05  Score=83.19  Aligned_cols=88  Identities=18%  Similarity=0.215  Sum_probs=69.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhcc---CcEEEEcCCCC----CCcCHHH
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKE---GGIFVTTTGCK----DIIRGEH  421 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~---aDiIi~atgt~----~lI~~e~  421 (718)
                      +|||||+|++|+.+|+.+...|.+|+++|+++.+.......|... .+.++++++   +|+|+++..+.    .++ .+.
T Consensus         2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i   80 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL   80 (299)
T ss_pred             EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence            699999999999999999999999999999876544444456554 478888876   58999876553    233 345


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..+++|.++||++...
T Consensus        81 ~~~l~~g~ivid~st~~   97 (299)
T PRK12490         81 YPLLSPGDIVVDGGNSR   97 (299)
T ss_pred             hccCCCCCEEEECCCCC
Confidence            66789999999998864

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=97.95  E-value=2.6e-05  Score=83.49  Aligned_cols=90  Identities=18%  Similarity=0.237  Sum_probs=70.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----CcC--HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----IIR--GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI~--~e~  421 (718)
                      ++|+|||+|++|..+|+.+...|.+|++||+++.+..+....|.. ..+..++++++|+|+++..+..    ++.  ...
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i   81 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV   81 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence            379999999999999999999999999999988765444444543 4578899999999998855432    222  123


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..++++.++||++.++
T Consensus        82 ~~~l~~g~lvid~sT~~   98 (296)
T PRK15461         82 CEGLSRDALVIDMSTIH   98 (296)
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            55689999999999975

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=3e-05  Score=82.94  Aligned_cols=80  Identities=25%  Similarity=0.360  Sum_probs=70.6

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHh----CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRL----FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~----fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      +.+.++.||++.|||-++ +|+-+|.+|..    .||.|++++.+.             .++.+.+++||+++.+.|.++
T Consensus       150 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t-------------~~l~~~~~~ADIVI~AvG~p~  216 (286)
T PRK14184        150 RYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT-------------PDLAEECREADFLFVAIGRPR  216 (286)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCCCC
Confidence            357789999999999998 69999999988    899999986432             358889999999999999999


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +|+.+.+   |+|+++|++|-
T Consensus       217 li~~~~v---k~GavVIDVGi  234 (286)
T PRK14184        217 FVTADMV---KPGAVVVDVGI  234 (286)
T ss_pred             cCCHHHc---CCCCEEEEeee
Confidence            9998777   99999999985

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=3.5e-05  Score=82.64  Aligned_cols=80  Identities=24%  Similarity=0.394  Sum_probs=69.0

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...    ++.|+++....             .++.+.+++|||++.+.|..+
T Consensus       150 ~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~nl~~~~~~ADIvIsAvGkp~  216 (293)
T PRK14185        150 RYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS-------------KNLKKECLEADIIIAALGQPE  216 (293)
T ss_pred             HhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC-------------CCHHHHHhhCCEEEEccCCcC
Confidence            346789999999999998 699999999876    79999985432             368889999999999999999


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +|+.+.   .|+|+++|++|-
T Consensus       217 ~i~~~~---vk~gavVIDvGi  234 (293)
T PRK14185        217 FVKADM---VKEGAVVIDVGT  234 (293)
T ss_pred             ccCHHH---cCCCCEEEEecC
Confidence            999754   599999999996

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=97.92  E-value=2e-05  Score=84.41  Aligned_cols=90  Identities=22%  Similarity=0.336  Sum_probs=71.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--HHHhhcCcee-------cCHHHHhccCcEEEEc---CC-
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYEV-------TTMEEAAKEGGIFVTT---TG-  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l~a~~~G~~v-------~~Leell~~aDiIi~a---tg-  412 (718)
                      ....+|.|||+|-+|...|+.+.++|++|++.|.++.+.  +... .+.++       ..+++.++++|++|.+   +| 
T Consensus       166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~-f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga  244 (371)
T COG0686         166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDL-FGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA  244 (371)
T ss_pred             CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHh-hCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence            456789999999999999999999999999999876542  2222 23332       2478889999999964   33 


Q ss_pred             -CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         413 -CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       413 -t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                       .+.++.++++++||+|+++|+++-
T Consensus       245 kaPkLvt~e~vk~MkpGsVivDVAi  269 (371)
T COG0686         245 KAPKLVTREMVKQMKPGSVIVDVAI  269 (371)
T ss_pred             CCceehhHHHHHhcCCCcEEEEEEE
Confidence             567999999999999999999864

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=3.5e-05  Score=82.83  Aligned_cols=80  Identities=19%  Similarity=0.358  Sum_probs=69.2

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...    ++.|+++....             .++.+.+++|||||.++|..+
T Consensus       154 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T-------------~~l~~~~~~ADIvVsAvGkp~  220 (297)
T PRK14168        154 RSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS-------------KNLARHCQRADILIVAAGVPN  220 (297)
T ss_pred             HhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC-------------cCHHHHHhhCCEEEEecCCcC
Confidence            357889999999999998 699999999877    79999985421             357888999999999999999


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +|+.+.   .|+|+++||+|.
T Consensus       221 ~i~~~~---ik~gavVIDvGi  238 (297)
T PRK14168        221 LVKPEW---IKPGATVIDVGV  238 (297)
T ss_pred             ccCHHH---cCCCCEEEecCC
Confidence            999865   489999999985

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.92  E-value=3.7e-05  Score=82.65  Aligned_cols=80  Identities=25%  Similarity=0.357  Sum_probs=68.8

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhC----CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLF----GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~f----Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      +.+.++.||+|.|||-++ +|+.+|.+|...    ++.|++++...             .++.+..++|||++.+.|..+
T Consensus       150 ~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T-------------~~l~~~~~~ADIvIsAvGkp~  216 (297)
T PRK14167        150 AAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT-------------DDLAAKTRRADIVVAAAGVPE  216 (297)
T ss_pred             HhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC-------------CCHHHHHhhCCEEEEccCCcC
Confidence            446789999999999998 699999999766    89999985422             357889999999999999999


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +|+.+.   .|+|+++|++|-
T Consensus       217 ~i~~~~---ik~gaiVIDvGi  234 (297)
T PRK14167        217 LIDGSM---LSEGATVIDVGI  234 (297)
T ss_pred             ccCHHH---cCCCCEEEEccc
Confidence            999854   589999999995

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.92  E-value=8.5e-05  Score=78.90  Aligned_cols=97  Identities=19%  Similarity=0.192  Sum_probs=68.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC----EEEEEecCCccHHHHh-hcCcee-cCHHHHhccCcEEEEcCCCCCCcC--HH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS----RVIVTEIDPINALQAS-MEGYEV-TTMEEAAKEGGIFVTTTGCKDIIR--GE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa----~Viv~d~dp~~al~a~-~~G~~v-~~Leell~~aDiIi~atgt~~lI~--~e  420 (718)
                      ++|||||+|++|.++++.+..-|.    +|+++++++.+..... ..|... .+..+++++||+|+++.....+.+  .+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavkP~~~~~vl~~   82 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIKPDLYSSVINQ   82 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeChHHHHHHHHH
Confidence            579999999999999999987764    6999988775543332 246544 467788999999999866433321  12


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      .-..++++.++|.+.-|   ++++.|.+
T Consensus        83 l~~~~~~~~lvISi~AG---i~i~~l~~  107 (272)
T PRK12491         83 IKDQIKNDVIVVTIAAG---KSIKSTEN  107 (272)
T ss_pred             HHHhhcCCcEEEEeCCC---CcHHHHHH
Confidence            22345788899998876   55666655

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.91  E-value=2.9e-05  Score=87.17  Aligned_cols=98  Identities=23%  Similarity=0.311  Sum_probs=73.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHH-HhhcCcee---cCHHHHhccCcEEEEcCCC-CCCcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQ-ASMEGYEV---TTMEEAAKEGGIFVTTTGC-KDIIR  418 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~-a~~~G~~v---~~Leell~~aDiIi~atgt-~~lI~  418 (718)
                      .+.|++|+|||+|.||+.+++.|+..| .+|+++++++.++.. +...|...   .++.+++..+|+|+++|+. ..+++
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~~ii~  256 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPHPIVS  256 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCCceEc
Confidence            478999999999999999999999999 689999988765432 22223222   3566778899999999864 55789


Q ss_pred             HHHHhcCC----CCeEEEEcCCCCccccH
Q psy7896         419 GEHFLQMR----DDAIVCNIGHFDCEIQV  443 (718)
Q Consensus       419 ~e~l~~MK----~gAiLIN~GRgd~Eid~  443 (718)
                      .+.++.+.    ...++++.+.. .++|.
T Consensus       257 ~e~l~~~~~~~~~~~~viDla~P-rdid~  284 (417)
T TIGR01035       257 KEDVERALRERTRPLFIIDIAVP-RDVDP  284 (417)
T ss_pred             HHHHHHHHhcCCCCeEEEEeCCC-CCCCh
Confidence            88887652    34699999853 34554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.89  E-value=2.6e-05  Score=74.21  Aligned_cols=93  Identities=24%  Similarity=0.340  Sum_probs=70.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHH--hh--cCceec---CHHHHhccCcEEEEcCCC-CC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQA--SM--EGYEVT---TMEEAAKEGGIFVTTTGC-KD  415 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a--~~--~G~~v~---~Leell~~aDiIi~atgt-~~  415 (718)
                      +++|+++.|||.|.+|+.++..|...|++ |+++++++.++.+.  ..  ..+.+.   ++.+.+.++|+|+.+|+. ..
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~   88 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP   88 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred             CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence            78999999999999999999999999996 99999887654321  11  123333   455668899999998764 34


Q ss_pred             CcCHHHHhcCCCCe-EEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDA-IVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gA-iLIN~GRg  437 (718)
                      .++++.++..++.. ++++.|.-
T Consensus        89 ~i~~~~~~~~~~~~~~v~Dla~P  111 (135)
T PF01488_consen   89 IITEEMLKKASKKLRLVIDLAVP  111 (135)
T ss_dssp             SSTHHHHTTTCHHCSEEEES-SS
T ss_pred             ccCHHHHHHHHhhhhceeccccC
Confidence            78988888776655 89998864

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=97.88  E-value=4.7e-05  Score=72.61  Aligned_cols=96  Identities=18%  Similarity=0.194  Sum_probs=68.8

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHh-hcC-----ceecCHHHHhccCcEEEEcCCCCC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQAS-MEG-----YEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~-~~G-----~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      +.++.+++++|+|+|.+|+.+++.+...| .+|.++++++.+..+.. ..+     ....+.+++++++|+|+++++...
T Consensus        14 ~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~   93 (155)
T cd01065          14 GIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGM   93 (155)
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCC
Confidence            44578999999999999999999999886 78999998875433211 112     234577788899999999865532


Q ss_pred             C-cCHHH--HhcCCCCeEEEEcCCCC
Q psy7896         416 I-IRGEH--FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       416 l-I~~e~--l~~MK~gAiLIN~GRgd  438 (718)
                      . +....  ...++++.++++++...
T Consensus        94 ~~~~~~~~~~~~~~~~~~v~D~~~~~  119 (155)
T cd01065          94 KPGDELPLPPSLLKPGGVVYDVVYNP  119 (155)
T ss_pred             CCCCCCCCCHHHcCCCCEEEEcCcCC
Confidence            1 11111  13468999999998754

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.86  E-value=3.5e-05  Score=82.52  Aligned_cols=90  Identities=22%  Similarity=0.254  Sum_probs=71.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-HhhcCcee-cCHHHHhccCcEEEEcCCC-C---CCcC--HH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-ASMEGYEV-TTMEEAAKEGGIFVTTTGC-K---DIIR--GE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-a~~~G~~v-~~Leell~~aDiIi~atgt-~---~lI~--~e  420 (718)
                      .+|++||+|..|..+|++|..-|..|.+||++|.++.+ ....|... .+..|+++.+|+|+++-.+ .   .++.  ..
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g   80 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG   80 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence            47999999999999999999999999999999987433 33446554 4678999999999987332 1   1222  34


Q ss_pred             HHhcCCCCeEEEEcCCCC
Q psy7896         421 HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd  438 (718)
                      .++.||+|.++|+++-.+
T Consensus        81 ~~~~~~~G~i~IDmSTis   98 (286)
T COG2084          81 LLEGLKPGAIVIDMSTIS   98 (286)
T ss_pred             hhhcCCCCCEEEECCCCC
Confidence            578899999999998854

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.85  E-value=5.4e-05  Score=81.40  Aligned_cols=81  Identities=21%  Similarity=0.319  Sum_probs=69.8

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHh----CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRL----FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~----fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      +.+.++.||+|.|||-+. +|+.+|.+|..    .|+.|+++....             .++.+++++||++|.+.|..+
T Consensus       152 ~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t-------------~~l~~~~~~ADIvI~Avg~~~  218 (295)
T PRK14174        152 RYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT-------------KDIPSYTRQADILIAAIGKAR  218 (295)
T ss_pred             HhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc-------------hhHHHHHHhCCEEEEecCccC
Confidence            346789999999999998 69999999976    689999986432             257889999999999999989


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +|+.+.+   |+|+++|++|-.
T Consensus       219 li~~~~v---k~GavVIDVgi~  237 (295)
T PRK14174        219 FITADMV---KPGAVVIDVGIN  237 (295)
T ss_pred             ccCHHHc---CCCCEEEEeecc
Confidence            9998887   999999999853

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.83  E-value=4.8e-05  Score=80.88  Aligned_cols=81  Identities=27%  Similarity=0.338  Sum_probs=70.6

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.+++||++.|||-++ +|+-++.+|...++.|++++...             .++.+..++|||++.+.|-.++|++
T Consensus       149 ~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T-------------~~l~~~~k~ADIvv~AvG~p~~i~~  215 (283)
T COG0190         149 EYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT-------------KDLASITKNADIVVVAVGKPHFIKA  215 (283)
T ss_pred             HhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC-------------CCHHHHhhhCCEEEEecCCcccccc
Confidence            456789999999999999 59999999999999999996532             3678889999999999999999996


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +   ..|+|+++|++|--
T Consensus       216 d---~vk~gavVIDVGin  230 (283)
T COG0190         216 D---MVKPGAVVIDVGIN  230 (283)
T ss_pred             c---cccCCCEEEecCCc
Confidence            4   45999999999863

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=97.81  E-value=7.2e-05  Score=80.14  Aligned_cols=89  Identities=19%  Similarity=0.145  Sum_probs=69.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhcc---CcEEEEcCCCC----CCcCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKE---GGIFVTTTGCK----DIIRGE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~---aDiIi~atgt~----~lI~~e  420 (718)
                      ++|||||+|.+|+.+|+.|...|.+|.++|+++.+.......|..+. +.+++++.   +|+|+++..+.    .++ ..
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~   79 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DE   79 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HH
Confidence            37999999999999999999999999999998865544444566554 68888875   68888875443    233 34


Q ss_pred             HHhcCCCCeEEEEcCCCC
Q psy7896         421 HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd  438 (718)
                      ....++++.++||++...
T Consensus        80 l~~~l~~g~ivid~st~~   97 (301)
T PRK09599         80 LAPLLSPGDIVIDGGNSY   97 (301)
T ss_pred             HHhhCCCCCEEEeCCCCC
Confidence            567789999999998864

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.79  E-value=5.6e-05  Score=84.98  Aligned_cols=93  Identities=25%  Similarity=0.290  Sum_probs=71.6

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-HhhcCceec---CHHHHhccCcEEEEcCCCC-CCcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-ASMEGYEVT---TMEEAAKEGGIFVTTTGCK-DIIR  418 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a~~~G~~v~---~Leell~~aDiIi~atgt~-~lI~  418 (718)
                      .+.|++|+|||.|.||+.+++.++..|+ +|+++++++.++.. +...|..+.   ++.+.+.++|+|+++|+.. .+++
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~  258 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIG  258 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEc
Confidence            4789999999999999999999999998 79999988765432 222233333   3556788999999998754 5788


Q ss_pred             HHHHhcC-----CCCeEEEEcCCC
Q psy7896         419 GEHFLQM-----RDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~M-----K~gAiLIN~GRg  437 (718)
                      .+.++.+     +.+.++++.+..
T Consensus       259 ~~~l~~~~~~~~~~~~vviDla~P  282 (423)
T PRK00045        259 KGMVERALKARRHRPLLLVDLAVP  282 (423)
T ss_pred             HHHHHHHHhhccCCCeEEEEeCCC
Confidence            8888765     356899999863

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.78  E-value=5.3e-05  Score=80.98  Aligned_cols=90  Identities=28%  Similarity=0.357  Sum_probs=71.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEec-CCccHHHHhhcCceecCHHHHhccCcEEEEcCCC---CCCcCHH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYEVTTMEEAAKEGGIFVTTTGC---KDIIRGE  420 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~-dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt---~~lI~~e  420 (718)
                      -|+||+|+|||||.-|.+=|..||.-|.+|++--+ .......|..+||.+.+.+|+++.+|+|...+..   ..+..++
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~q~~vy~~~   94 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQQKEVYEKE   94 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhhHHHHHHHH
Confidence            47999999999999999999999999999888433 2233455778999999999999999999876442   2344445


Q ss_pred             HHhcCCCCeEEEEc
Q psy7896         421 HFLQMRDDAIVCNI  434 (718)
Q Consensus       421 ~l~~MK~gAiLIN~  434 (718)
                      --..||.|+.|.-.
T Consensus        95 I~p~Lk~G~aL~Fa  108 (338)
T COG0059          95 IAPNLKEGAALGFA  108 (338)
T ss_pred             hhhhhcCCceEEec
Confidence            56789999966643

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=97.78  E-value=4.4e-05  Score=80.90  Aligned_cols=90  Identities=17%  Similarity=0.186  Sum_probs=66.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--ecCHHHHhccCcEEEEcCCCCCCc--CHHHHhc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--VTTMEEAAKEGGIFVTTTGCKDII--RGEHFLQ  424 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--v~~Leell~~aDiIi~atgt~~lI--~~e~l~~  424 (718)
                      ++|+|||+|.||..+|..++..|.+|+++|+++.....+...|..  ..+..+.++++|+|++++....+.  -++....
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~~~~~~~~l~~~   80 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGLLLPPSEQLIPA   80 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHHHHHHHHHHHHh
Confidence            379999999999999999999999999999887654444444431  222235688999999987643221  1334456


Q ss_pred             CCCCeEEEEcCCCC
Q psy7896         425 MRDDAIVCNIGHFD  438 (718)
Q Consensus       425 MK~gAiLIN~GRgd  438 (718)
                      +++++++.++|...
T Consensus        81 l~~~~ii~d~~Svk   94 (279)
T PRK07417         81 LPPEAIVTDVGSVK   94 (279)
T ss_pred             CCCCcEEEeCcchH
Confidence            78999999998864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=97.74  E-value=0.00031  Score=74.91  Aligned_cols=89  Identities=24%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-----------HhhcC-------------ceecCHHHHhccC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-----------ASMEG-------------YEVTTMEEAAKEG  404 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-----------a~~~G-------------~~v~~Leell~~a  404 (718)
                      ++|+|||.|.+|..+|+.+...|.+|+++|+++.....           ....|             ..+.+-.+.++.|
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a   84 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA   84 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence            68999999999999999999999999999988754211           11111             2233333568999


Q ss_pred             cEEEEcCC-C---CCCcCHHHHhcCCCCeEEE-EcCCC
Q psy7896         405 GIFVTTTG-C---KDIIRGEHFLQMRDDAIVC-NIGHF  437 (718)
Q Consensus       405 DiIi~atg-t---~~lI~~e~l~~MK~gAiLI-N~GRg  437 (718)
                      |+|+.+.. .   +..+-.+..+.++++++|+ |++..
T Consensus        85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i  122 (295)
T PLN02545         85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI  122 (295)
T ss_pred             CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC
Confidence            99999743 2   2233334445689999886 88774

>PLN02712 arogenate dehydrogenase

Probab=97.70  E-value=8.2e-05  Score=88.23  Aligned_cols=91  Identities=11%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHh-ccCcEEEEcCCC---CCCcCHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAA-KEGGIFVTTTGC---KDIIRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell-~~aDiIi~atgt---~~lI~~e~  421 (718)
                      +.++|||||+|+||+.+|+.++..|.+|+++++++... .+...|.. ..++++++ +++|+|++++..   ..++..-.
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~-~A~~~Gv~~~~d~~e~~~~~aDvViLavP~~~~~~vl~~l~  129 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSL-AARSLGVSFFLDPHDLCERHPDVILLCTSIISTENVLKSLP  129 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHH-HHHHcCCEEeCCHHHHhhcCCCEEEEcCCHHHHHHHHHhhh
Confidence            45789999999999999999999999999998764332 33344554 34678865 569999998653   33344322


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..|+++++++|++...
T Consensus       130 ~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        130 LQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             hhcCCCCeEEEECCCCc
Confidence            35689999999998754

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=97.69  E-value=0.0001  Score=79.10  Aligned_cols=91  Identities=19%  Similarity=0.267  Sum_probs=67.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCc---eecCHHHHhccCcEEEEcCCCCCC--cCHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGY---EVTTMEEAAKEGGIFVTTTGCKDI--IRGE  420 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~---~v~~Leell~~aDiIi~atgt~~l--I~~e  420 (718)
                      -++|+|||+|.||..+|+.++..|.  +|+++++++.....+...|.   ...+.+++++++|+|++++.....  +-.+
T Consensus         6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~~~~~v~~~   85 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVGASGAVAAE   85 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHHHHHHHHHH
Confidence            4689999999999999999998884  89999988764433434453   234678889999999998765322  2223


Q ss_pred             HHhcCCCCeEEEEcCCCC
Q psy7896         421 HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd  438 (718)
                      ....++++.+++++|...
T Consensus        86 l~~~l~~~~iv~dvgs~k  103 (307)
T PRK07502         86 IAPHLKPGAIVTDVGSVK  103 (307)
T ss_pred             HHhhCCCCCEEEeCccch
Confidence            345689999999998754

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=97.68  E-value=9.1e-05  Score=65.41  Aligned_cols=85  Identities=24%  Similarity=0.343  Sum_probs=59.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCC---CEEEE-EecCCccHHHH-hhcCceec--CHHHHhccCcEEEEcCCCCCC--cCHH
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFG---SRVIV-TEIDPINALQA-SMEGYEVT--TMEEAAKEGGIFVTTTGCKDI--IRGE  420 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fG---a~Viv-~d~dp~~al~a-~~~G~~v~--~Leell~~aDiIi~atgt~~l--I~~e  420 (718)
                      ||||||+|++|.++++.+...|   .+|++ ++++|.+..+. ...+..+.  +..|+++++|+|+++.....+  +-.+
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~~~~~v~~~   80 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQQLPEVLSE   80 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GGGHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHHHHHHHHHH
Confidence            6899999999999999999999   89995 48888765433 23444433  689999999999998654333  1111


Q ss_pred             HHhcCCCCeEEEEcC
Q psy7896         421 HFLQMRDDAIVCNIG  435 (718)
Q Consensus       421 ~l~~MK~gAiLIN~G  435 (718)
                       +....++.++|.+.
T Consensus        81 -i~~~~~~~~vis~~   94 (96)
T PF03807_consen   81 -IPHLLKGKLVISIA   94 (96)
T ss_dssp             -HHHHHTTSEEEEES
T ss_pred             -HhhccCCCEEEEeC
Confidence             14455677777654

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.68  E-value=0.00011  Score=76.33  Aligned_cols=84  Identities=26%  Similarity=0.347  Sum_probs=60.8

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEec----------CCccHHHHh-hcC-------ceecCHHHHh-c
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEI----------DPINALQAS-MEG-------YEVTTMEEAA-K  402 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~----------dp~~al~a~-~~G-------~~v~~Leell-~  402 (718)
                      +.++.|++|.|+|+|+||+.+|+.|..+|++|+ +.|.          |+....... ..|       ....+.++++ .
T Consensus        26 ~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~~~~~i~~~  105 (227)
T cd01076          26 GIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERITNEELLEL  105 (227)
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceecCCccceee
Confidence            467899999999999999999999999999999 6665          332222111 112       1223445554 3


Q ss_pred             cCcEEEEcCCCCCCcCHHHHhcCCC
Q psy7896         403 EGGIFVTTTGCKDIIRGEHFLQMRD  427 (718)
Q Consensus       403 ~aDiIi~atgt~~lI~~e~l~~MK~  427 (718)
                      ++||++.|+.+ +.|+.+...+++-
T Consensus       106 ~~Dvlip~a~~-~~i~~~~~~~l~a  129 (227)
T cd01076         106 DCDILIPAALE-NQITADNADRIKA  129 (227)
T ss_pred             cccEEEecCcc-CccCHHHHhhcee
Confidence            78999998744 7899999999983

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.66  E-value=0.00043  Score=73.53  Aligned_cols=107  Identities=21%  Similarity=0.278  Sum_probs=76.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHH-HHhhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINAL-QASMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al-~a~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l  422 (718)
                      ++||+||+|++|++++.-+..-|    .+|+++++++.+.. .+...|.. ..+-.++..++|+|+++.....+  .+.+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavKPq~~--~~vl   79 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVKPQDL--EEVL   79 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeChHhH--HHHH
Confidence            57999999999999999999888    58999988776543 23334444 45667889999999998654332  3566


Q ss_pred             hcCC---CCeEEEEcCCCCccccHHHHhcc--ccceeeecCCc
Q psy7896         423 LQMR---DDAIVCNIGHFDCEIQVSWLDKN--AVEKVNVKPQV  460 (718)
Q Consensus       423 ~~MK---~gAiLIN~GRgd~Eid~~aL~~~--~l~~~~v~P~V  460 (718)
                      +.+|   ++.++|.+.-|   +..+.|+..  ......+.||.
T Consensus        80 ~~l~~~~~~~lvISiaAG---v~~~~l~~~l~~~~vvR~MPNt  119 (266)
T COG0345          80 SKLKPLTKDKLVISIAAG---VSIETLERLLGGLRVVRVMPNT  119 (266)
T ss_pred             HHhhcccCCCEEEEEeCC---CCHHHHHHHcCCCceEEeCCCh
Confidence            7776   68888888776   445555542  23455555665

>PRK08655 prephenate dehydrogenase; Provisional

Probab=97.65  E-value=0.00074  Score=76.47  Aligned_cols=89  Identities=25%  Similarity=0.297  Sum_probs=67.4

Q ss_pred             cEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhhcCcee-cCHHHHhccCcEEEEcCCCCC---CcCHHHH
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASMEGYEV-TTMEEAAKEGGIFVTTTGCKD---IIRGEHF  422 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~~G~~v-~~Leell~~aDiIi~atgt~~---lI~~e~l  422 (718)
                      ++|+||| +|.+|..+|+.++..|.+|+++++++.... .+...|..+ .+..++++++|+|++++....   ++ .+..
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~~~~~~vl-~~l~   79 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPINVTEDVI-KEVA   79 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCHHHHHHHH-HHHH
Confidence            4799998 899999999999999999999998875432 233345543 367888999999999865432   22 2334


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      ..+++++++++++...
T Consensus        80 ~~l~~~~iViDvsSvK   95 (437)
T PRK08655         80 PHVKEGSLLMDVTSVK   95 (437)
T ss_pred             hhCCCCCEEEEccccc
Confidence            5689999999999753

>PRK12831 putative oxidoreductase; Provisional

Probab=97.63  E-value=0.00016  Score=82.30  Aligned_cols=37  Identities=32%  Similarity=0.385  Sum_probs=33.7

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  302 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp  302 (718)
                      ...+++++|||.|+.|+.+|..|+++|+.|+++|..+
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~  173 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALH  173 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            3578999999999999999999999999999999644

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.63  E-value=0.00016  Score=78.12  Aligned_cols=88  Identities=20%  Similarity=0.113  Sum_probs=68.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--------C------c-eecCHHHHhccCcEEEEcCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME--------G------Y-EVTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--------G------~-~v~~Leell~~aDiIi~atg  412 (718)
                      .++|+|||.|.+|..+|..|...|.+|+++++++.........        |      . ...+++++++.+|+|+++..
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~   83 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVP   83 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECc
Confidence            4689999999999999999999999999999876532211111        3      2 23478888999999999876


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +..+  .+.++.++++.+++++..|
T Consensus        84 ~~~~--~~v~~~l~~~~~vi~~~~G  106 (328)
T PRK14618         84 SKAL--RETLAGLPRALGYVSCAKG  106 (328)
T ss_pred             hHHH--HHHHHhcCcCCEEEEEeec
Confidence            6543  6677889999999998775

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=97.62  E-value=0.00016  Score=77.40  Aligned_cols=88  Identities=17%  Similarity=0.165  Sum_probs=66.0

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----Cc-CH-HHH
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----II-RG-EHF  422 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI-~~-e~l  422 (718)
                      +|||||.|++|..+|+.+...|.+|++++++|. .......|.. ..+..++++++|+|+++..+..    ++ .. ..+
T Consensus         2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~   80 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCT   80 (292)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchh
Confidence            699999999999999999999999999998874 2222334553 4578889999999998754421    22 11 135


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      +.+++|.++|+++-.+
T Consensus        81 ~~~~~g~ivvd~sT~~   96 (292)
T PRK15059         81 KASLKGKTIVDMSSIS   96 (292)
T ss_pred             ccCCCCCEEEECCCCC
Confidence            5678999999998754

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.62  E-value=0.00015  Score=78.06  Aligned_cols=79  Identities=16%  Similarity=0.175  Sum_probs=61.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcC-HHHHh--
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIR-GEHFL--  423 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~-~e~l~--  423 (718)
                      .+++|+|||.|++|+.+|+.+...|.+|.++++++.            .+++++++++|+|+++.....+-. -+.+.  
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~------------~~~~~~~~~advvi~~vp~~~~~~v~~~l~~~   70 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG------------LSLAAVLADADVIVSAVSMKGVRPVAEQVQAL   70 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC------------CCHHHHHhcCCEEEEECChHHHHHHHHHHHHh
Confidence            467999999999999999999999999999987653            357788899999998865432211 02343  


Q ss_pred             cCCCCeEEEEcCCC
Q psy7896         424 QMRDDAIVCNIGHF  437 (718)
Q Consensus       424 ~MK~gAiLIN~GRg  437 (718)
                      .+++++++++++.+
T Consensus        71 ~~~~~~ivi~~s~g   84 (308)
T PRK14619         71 NLPPETIIVTATKG   84 (308)
T ss_pred             cCCCCcEEEEeCCc
Confidence            47889999998764

>PRK06545 prephenate dehydrogenase; Validated

Probab=97.60  E-value=0.00013  Score=80.20  Aligned_cols=90  Identities=20%  Similarity=0.370  Sum_probs=65.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-----ecCHHHHhccCcEEEEcCCCCCCcCH-HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-----VTTMEEAAKEGGIFVTTTGCKDIIRG-EHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-----v~~Leell~~aDiIi~atgt~~lI~~-e~l  422 (718)
                      ++|+|||+|.||..+|+.++..|.+|.+++.++.........+..     ..+++++++++|+|++++....+..- +.+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~~~~~~vl~~l   80 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPVDATAALLAEL   80 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCHHHHHHHHHHH
Confidence            579999999999999999999999999998887653222222222     24577889999999998664322110 233


Q ss_pred             h--cCCCCeEEEEcCCCC
Q psy7896         423 L--QMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~--~MK~gAiLIN~GRgd  438 (718)
                      .  .+++++++.++|...
T Consensus        81 ~~~~l~~~~ivtDv~SvK   98 (359)
T PRK06545         81 ADLELKPGVIVTDVGSVK   98 (359)
T ss_pred             hhcCCCCCcEEEeCcccc
Confidence            3  378899999998865

>PLN00203 glutamyl-tRNA reductase

Probab=97.56  E-value=0.00022  Score=82.27  Aligned_cols=93  Identities=18%  Similarity=0.194  Sum_probs=71.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh--hcCc--ee---cCHHHHhccCcEEEEcCCC-CC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS--MEGY--EV---TTMEEAAKEGGIFVTTTGC-KD  415 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~--~~G~--~v---~~Leell~~aDiIi~atgt-~~  415 (718)
                      ++.+++|+|||.|.+|+.+++.|...|+ +|+++++++.+.....  ..+.  .+   .++.+++.++|+|+++|+. ..
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~p  342 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSETP  342 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCCC
Confidence            5889999999999999999999999997 7999998876543222  1132  22   2456778999999998764 45


Q ss_pred             CcCHHHHhcCCC-------CeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRD-------DAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~-------gAiLIN~GRg  437 (718)
                      +|.++.++.|++       .-++|+.+-.
T Consensus       343 vI~~e~l~~~~~~~~~~~~~~~~IDLAvP  371 (519)
T PLN00203        343 LFLKEHVEALPPASDTVGGKRLFVDISVP  371 (519)
T ss_pred             eeCHHHHHHhhhcccccCCCeEEEEeCCC
Confidence            899999988743       2489998875

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=97.53  E-value=0.0003  Score=79.55  Aligned_cols=116  Identities=25%  Similarity=0.273  Sum_probs=72.1

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc------
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL------  334 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~------  334 (718)
                      ...+++++|||.|+.|+.+|..|+.+|..|+++|..+...-.  -....+.+..++   ....+...++++...      
T Consensus       130 ~~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~  209 (449)
T TIGR01316       130 PSTHKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVTYGIPEFRLPKEIVVTEIKTLKKLGVTFRMNFLVGKT  209 (449)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEeeecCCCccCCHHHHHHHHHHHHhCCcEEEeCCccCCc
Confidence            346899999999999999999999999999999975432100  000111222111   111222223222100      


Q ss_pred             --------------------chhhh--------------hhhc---------------ccccCcEEEEEecChhHHHHHH
Q psy7896         335 --------------------TEDQA--------------KYLD---------------IMLAGKVAVVAGYGDVGKGCAQ  365 (718)
Q Consensus       335 --------------------~~~~~--------------~~~g---------------~eL~GktVGIIG~G~IG~~vA~  365 (718)
                                          .+...              .+..               ....||+|.|||.|++|..+|+
T Consensus       210 v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~  289 (449)
T TIGR01316       210 ATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSAR  289 (449)
T ss_pred             CCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHHHH
Confidence                                00000              0000               0136799999999999999999


Q ss_pred             HHHhCCCEEEEEecCC
Q psy7896         366 SLRLFGSRVIVTEIDP  381 (718)
Q Consensus       366 ~l~~fGa~Viv~d~dp  381 (718)
                      .+..+|++|+++.+.+
T Consensus       290 ~l~~~G~~Vtlv~~~~  305 (449)
T TIGR01316       290 TALRLGAEVHCLYRRT  305 (449)
T ss_pred             HHHHcCCEEEEEeecC
Confidence            9999999999876543

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=97.51  E-value=0.00075  Score=69.97  Aligned_cols=94  Identities=20%  Similarity=0.276  Sum_probs=73.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCE---EEEEecCC----ccH-------H-HHhhcC-cee-cCHHHHhccCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSR---VIVTEIDP----INA-------L-QASMEG-YEV-TTMEEAAKEGG  405 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~---Viv~d~dp----~~a-------l-~a~~~G-~~v-~~Leell~~aD  405 (718)
                      +..++++++.|+|.|..|+.+|..+...|++   |.++|+++    .+.       . -+...+ ... .++.+.++++|
T Consensus        20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d   99 (226)
T cd05311          20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD   99 (226)
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence            5678999999999999999999999999985   99999883    221       0 011111 111 36778889999


Q ss_pred             EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++|.+|+ .++++.+.++.|+++.++.....-
T Consensus       100 vlIgaT~-~G~~~~~~l~~m~~~~ivf~lsnP  130 (226)
T cd05311         100 VFIGVSR-PGVVKKEMIKKMAKDPIVFALANP  130 (226)
T ss_pred             EEEeCCC-CCCCCHHHHHhhCCCCEEEEeCCC
Confidence            9999988 799999999999999888877743

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.49  E-value=0.0012  Score=70.28  Aligned_cols=97  Identities=12%  Similarity=0.024  Sum_probs=63.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHHHHh--hc-Cce-ecCHHHHhccCcEEEEcCCCCCCcC--
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINALQAS--ME-GYE-VTTMEEAAKEGGIFVTTTGCKDIIR--  418 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a~--~~-G~~-v~~Leell~~aDiIi~atgt~~lI~--  418 (718)
                      .+|+|||+|++|..+++.+...|    .+|.++++++.......  .. +.. ..+..++++++|+|+++.....+..  
T Consensus         2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavpp~~~~~vl   81 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVPPLAVLPLL   81 (277)
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecCHHHHHHHH
Confidence            47999999999999999998887    57888887653222211  11 233 3567888999999999866543321  


Q ss_pred             HHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      .+....++++..+|.+.-|   +..+.|.+
T Consensus        82 ~~l~~~l~~~~~ivS~~aG---i~~~~l~~  108 (277)
T PRK06928         82 KDCAPVLTPDRHVVSIAAG---VSLDDLLE  108 (277)
T ss_pred             HHHHhhcCCCCEEEEECCC---CCHHHHHH
Confidence            1111335677778877665   44445544

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.48  E-value=0.00046  Score=75.74  Aligned_cols=95  Identities=23%  Similarity=0.316  Sum_probs=71.7

Q ss_pred             hhcccccCcEEEEEec-ChhHHHHHHHHHh-CCC-EEEEEecCCccHHHHhhc--CceecCHHHHhccCcEEEEcCCC-C
Q psy7896         341 YLDIMLAGKVAVVAGY-GDVGKGCAQSLRL-FGS-RVIVTEIDPINALQASME--GYEVTTMEEAAKEGGIFVTTTGC-K  414 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~-G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a~~~--G~~v~~Leell~~aDiIi~atgt-~  414 (718)
                      .++..+.||+|.|+|. |.||+.+++.+.. .|. +++++++++.+......+  ...+.++++++.++|+|+.+++. .
T Consensus       148 ~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~  227 (340)
T PRK14982        148 RLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK  227 (340)
T ss_pred             HhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc
Confidence            3466899999999998 8999999999964 575 888888765543221111  12345788999999999998775 4


Q ss_pred             CC-cCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DI-IRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~l-I~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .+ |+.+.+   +++.++|++|+--
T Consensus       228 ~~~I~~~~l---~~~~~viDiAvPR  249 (340)
T PRK14982        228 GVEIDPETL---KKPCLMIDGGYPK  249 (340)
T ss_pred             CCcCCHHHh---CCCeEEEEecCCC
Confidence            43 787654   8999999999963

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=97.48  E-value=0.0002  Score=76.70  Aligned_cols=89  Identities=13%  Similarity=0.103  Sum_probs=66.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHH---hccCcEEEEcCCCC---CCcCHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEA---AKEGGIFVTTTGCK---DIIRGEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leel---l~~aDiIi~atgt~---~lI~~e~  421 (718)
                      ++|||||+|++|..+|+.+...|.+|.++|+++.+.......|.. ..+++++   ++.+|+|+++..+.   .++ .+.
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~~~~~v~-~~l   79 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHGIVDAVL-EEL   79 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCchHHHHHH-HHH
Confidence            379999999999999999999999999999988654433334432 3455554   45689999876543   223 344


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      ...+++|.++|+++-..
T Consensus        80 ~~~l~~g~ivid~st~~   96 (298)
T TIGR00872        80 APTLEKGDIVIDGGNSY   96 (298)
T ss_pred             HhhCCCCCEEEECCCCC
Confidence            56789999999998764

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.48  E-value=0.00081  Score=70.38  Aligned_cols=66  Identities=23%  Similarity=0.251  Sum_probs=50.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC---CEEEEEecCCccHHHHhh-cCcee-cCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG---SRVIVTEIDPINALQASM-EGYEV-TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG---a~Viv~d~dp~~al~a~~-~G~~v-~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||+|+||..+++.+..-|   .+|.++++++........ .|..+ .+.++++.++|+|++++...
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~   73 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ   73 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH
Confidence            57999999999999999998888   689999988754333222 25543 46778889999999987553

>PRK08507 prephenate dehydrogenase; Validated

Probab=97.48  E-value=0.00025  Score=74.86  Aligned_cols=87  Identities=16%  Similarity=0.246  Sum_probs=62.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCc--eecCHHHHhccCcEEEEcCCCCCCcC--HHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGY--EVTTMEEAAKEGGIFVTTTGCKDIIR--GEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~--~v~~Leell~~aDiIi~atgt~~lI~--~e~l  422 (718)
                      ++|+|||+|.+|..+|+.++..|.  +|+++|+++.....+...|.  ...+.+++. ++|+|++++....+..  .+..
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~~~~~~~~~l~   79 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVDAIIEILPKLL   79 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHHHHHHHHHHHh
Confidence            379999999999999999988774  78889888765444444554  234667765 4999999876533221  2233


Q ss_pred             hcCCCCeEEEEcCCC
Q psy7896         423 LQMRDDAIVCNIGHF  437 (718)
Q Consensus       423 ~~MK~gAiLIN~GRg  437 (718)
                      . ++++++++++|..
T Consensus        80 ~-l~~~~iv~d~gs~   93 (275)
T PRK08507         80 D-IKENTTIIDLGST   93 (275)
T ss_pred             c-cCCCCEEEECccc
Confidence            4 7889999998774

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.48  E-value=0.00023  Score=75.74  Aligned_cols=89  Identities=16%  Similarity=0.204  Sum_probs=63.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------hcC-----------------ce-ecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------MEG-----------------YE-VTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------~~G-----------------~~-v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.       ..+                 .. ..++++++++
T Consensus         2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~   81 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD   81 (288)
T ss_pred             cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence            5799999999999999999999999999999876432211       011                 11 3467889999


Q ss_pred             CcEEEEcCCCCCC----cCHHHHhcCCCCeEE-EEcCCC
Q psy7896         404 GGIFVTTTGCKDI----IRGEHFLQMRDDAIV-CNIGHF  437 (718)
Q Consensus       404 aDiIi~atgt~~l----I~~e~l~~MK~gAiL-IN~GRg  437 (718)
                      +|+|+.+..+.--    +-.+..+.+++++++ +|++..
T Consensus        82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~  120 (288)
T PRK09260         82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTM  120 (288)
T ss_pred             CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence            9999988554321    112334567889876 788774

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.48  E-value=0.00045  Score=74.69  Aligned_cols=92  Identities=20%  Similarity=0.267  Sum_probs=66.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-HhhcCceecC---HHHHhccCcEEEEcCCCCCC--cC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-ASMEGYEVTT---MEEAAKEGGIFVTTTGCKDI--IR  418 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a~~~G~~v~~---Leell~~aDiIi~atgt~~l--I~  418 (718)
                      +.|++|+|||.|.||+.+++.++..|+ +|+++++++.+..+ +...|..+.+   +.+.++++|+|+++|+..+.  +.
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~  255 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHYAKIV  255 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCchHHHH
Confidence            789999999999999999999998775 78999988765422 2233444433   56778899999999987665  11


Q ss_pred             HHHHhcC-CCCeEEEEcCCC
Q psy7896         419 GEHFLQM-RDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~M-K~gAiLIN~GRg  437 (718)
                      +..++.. +.+.++++.+..
T Consensus       256 ~~~~~~~~~~~~~viDlavP  275 (311)
T cd05213         256 ERAMKKRSGKPRLIVDLAVP  275 (311)
T ss_pred             HHHHhhCCCCCeEEEEeCCC
Confidence            2223222 367899999864

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=97.47  E-value=0.0012  Score=73.39  Aligned_cols=78  Identities=21%  Similarity=0.353  Sum_probs=62.3

Q ss_pred             cCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC---CcCHHHH
Q psy7896         347 AGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD---IIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~---lI~~e~l  422 (718)
                      ..++|+||| .|.+|..+|+.++..|..|+++++++.            .+.+++++++|+|++++....   ++  +.+
T Consensus        97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~------------~~~~~~~~~aDlVilavP~~~~~~~~--~~l  162 (374)
T PRK11199         97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW------------DRAEDILADAGMVIVSVPIHLTEEVI--ARL  162 (374)
T ss_pred             ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc------------hhHHHHHhcCCEEEEeCcHHHHHHHH--HHH
Confidence            458999999 999999999999999999999987642            245678889999999865432   23  224


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      ..+++|++++++|...
T Consensus       163 ~~l~~~~iv~Dv~SvK  178 (374)
T PRK11199        163 PPLPEDCILVDLTSVK  178 (374)
T ss_pred             hCCCCCcEEEECCCcc
Confidence            4489999999998864

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=97.46  E-value=0.00025  Score=75.54  Aligned_cols=85  Identities=18%  Similarity=0.218  Sum_probs=65.8

Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----CcC--HHHHhcC
Q psy7896         353 VAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----IIR--GEHFLQM  425 (718)
Q Consensus       353 IIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI~--~e~l~~M  425 (718)
                      |||+|.+|..+|+.+...|.+|+++|+++.+.......|... .+..++++++|+|+++..+..    ++.  ......+
T Consensus         1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~   80 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV   80 (288)
T ss_pred             CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence            589999999999999999999999999886544444456543 478899999999999855422    221  2345678


Q ss_pred             CCCeEEEEcCCC
Q psy7896         426 RDDAIVCNIGHF  437 (718)
Q Consensus       426 K~gAiLIN~GRg  437 (718)
                      +++.++||++-.
T Consensus        81 ~~g~~vid~st~   92 (288)
T TIGR01692        81 AKGSLLIDCSTI   92 (288)
T ss_pred             CCCCEEEECCCC
Confidence            999999999854

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PLN02688 pyrroline-5-carboxylate reductase

Probab=97.43  E-value=0.00039  Score=72.66  Aligned_cols=89  Identities=13%  Similarity=0.141  Sum_probs=64.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC----EEEEE-ecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCCCcC--HH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS----RVIVT-EIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKDIIR--GE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa----~Viv~-d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~lI~--~e  420 (718)
                      ++|||||+|++|..+++.+..-|.    +|+++ ++++.+.......|... .+..++++++|+|+++.....+-.  .+
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~~~~~~~vl~~   80 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVKPQVVKDVLTE   80 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEECcHHHHHHHHH
Confidence            479999999999999999988887    88888 87776544444457654 467888999999999864332211  12


Q ss_pred             HHhcCCCCeEEEEcCCC
Q psy7896         421 HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRg  437 (718)
                      ....++++.++|++.-+
T Consensus        81 l~~~~~~~~~iIs~~~g   97 (266)
T PLN02688         81 LRPLLSKDKLLVSVAAG   97 (266)
T ss_pred             HHhhcCCCCEEEEecCC
Confidence            23456788888877544

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.42  E-value=0.00039  Score=83.57  Aligned_cols=114  Identities=25%  Similarity=0.291  Sum_probs=74.5

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL-------  334 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~-------  334 (718)
                      ..|++|+|||.|+.|+++|..|+.+|..|+++|..+.....  -....|++++++   +...+..+|+.+...       
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~~~v  508 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFETDVIVGKTI  508 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEECCcC
Confidence            57999999999999999999999999999999975432100  001123333322   223334444443210       


Q ss_pred             --ch---------------hhhh-----------------hhc--------------ccccCcEEEEEecChhHHHHHHH
Q psy7896         335 --TE---------------DQAK-----------------YLD--------------IMLAGKVAVVAGYGDVGKGCAQS  366 (718)
Q Consensus       335 --~~---------------~~~~-----------------~~g--------------~eL~GktVGIIG~G~IG~~vA~~  366 (718)
                        ..               +..+                 +..              ....||+|.|||.|++|..+|+.
T Consensus       509 ~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~A~~  588 (752)
T PRK12778        509 TIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSART  588 (752)
T ss_pred             CHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHHHHH
Confidence              00               0000                 000              01357999999999999999999


Q ss_pred             HHhCCCE-EEEEecC
Q psy7896         367 LRLFGSR-VIVTEID  380 (718)
Q Consensus       367 l~~fGa~-Viv~d~d  380 (718)
                      +..+|++ |+++.+.
T Consensus       589 ~~r~Ga~~Vtlv~r~  603 (752)
T PRK12778        589 AKRLGAERVTIVYRR  603 (752)
T ss_pred             HHHcCCCeEEEeeec
Confidence            9999997 9887653

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.39  E-value=0.00082  Score=72.57  Aligned_cols=99  Identities=16%  Similarity=0.136  Sum_probs=73.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHHHh----hcCce--ecCHHHHhccCcEEEEcCCC-CCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQAS----MEGYE--VTTMEEAAKEGGIFVTTTGC-KDI  416 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a~----~~G~~--v~~Leell~~aDiIi~atgt-~~l  416 (718)
                      ...++++|||.|.+|+..++.+.. ++. +|.++++++.++....    ..++.  +.+.+++++++|+|+++|.. ..+
T Consensus       123 ~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~Pl  202 (304)
T PRK07340        123 APPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRTPV  202 (304)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCCce
Confidence            367899999999999999998864 675 6999999886543211    12333  34789999999999998764 445


Q ss_pred             cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      |+.    .+|+|+.+.++|..   ..|+|.+.+..
T Consensus       203 ~~~----~~~~g~hi~~iGs~~p~~~El~~~~~~~  233 (304)
T PRK07340        203 YPE----AARAGRLVVAVGAFTPDMAELAPRTVRG  233 (304)
T ss_pred             eCc----cCCCCCEEEecCCCCCCcccCCHHHHhh
Confidence            653    37999999999964   46888776665

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.38  E-value=0.0005  Score=85.18  Aligned_cols=111  Identities=23%  Similarity=0.341  Sum_probs=73.1

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh--hhhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASMEGYELDEEV---AALHLEHLGVKLTKL-------  334 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v--~AvaeGf~L~r~i---~~~~l~~lgv~~~~~-------  334 (718)
                      ..|++|+|||.|+.|+++|..|+++|+.|+|+|..+....  ......|++++++   +...+..+|+++...       
T Consensus       428 ~~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~gip~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~~~  507 (1006)
T PRK12775        428 KKLGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQYGIPSFRLPRDIIDREVQRLVDIGVKIETNKVIGKTF  507 (1006)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeeccCCccCCCHHHHHHHHHHHHHCCCEEEeCCccCCcc
Confidence            3689999999999999999999999999999997653321  1112234444332   334444455544210       


Q ss_pred             --ch----------------hhhhhh---c-----------------------------ccccCcEEEEEecChhHHHHH
Q psy7896         335 --TE----------------DQAKYL---D-----------------------------IMLAGKVAVVAGYGDVGKGCA  364 (718)
Q Consensus       335 --~~----------------~~~~~~---g-----------------------------~eL~GktVGIIG~G~IG~~vA  364 (718)
                        ..                +..+..   |                             ....||+|.|||.|++|..+|
T Consensus       508 ~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D~A  587 (1006)
T PRK12775        508 TVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCL  587 (1006)
T ss_pred             CHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHHHH
Confidence              00                000000   1                             013589999999999999999


Q ss_pred             HHHHhCCCE-EEEE
Q psy7896         365 QSLRLFGSR-VIVT  377 (718)
Q Consensus       365 ~~l~~fGa~-Viv~  377 (718)
                      +.+..+|++ |++.
T Consensus       588 ~~a~rlGa~~Vtiv  601 (1006)
T PRK12775        588 RVAKRLGAPTVRCV  601 (1006)
T ss_pred             HHHHHcCCCEEEEE
Confidence            999999995 6543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.37  E-value=0.00053  Score=84.31  Aligned_cols=115  Identities=23%  Similarity=0.244  Sum_probs=75.1

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh--hhhhhhhhhhhHHH---HHHHHHHhcccccccc------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYELDEEV---AALHLEHLGVKLTKLT------  335 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~--v~AvaeGf~L~r~i---~~~~l~~lgv~~~~~~------  335 (718)
                      ..||+|+|||.|+.|+.+|..|+++|+.|+++|..+...  ......+|++++++   +...+...|+++....      
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~Vdi~l  616 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSPDLTV  616 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCceeEEEh
Confidence            579999999999999999999999999999999765421  11122344444332   2233344444432100      


Q ss_pred             -h---------------hhhh----------------hh-------cccccCcEEEEEecChhHHHHHHHHHhCCC--EE
Q psy7896         336 -E---------------DQAK----------------YL-------DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS--RV  374 (718)
Q Consensus       336 -~---------------~~~~----------------~~-------g~eL~GktVGIIG~G~IG~~vA~~l~~fGa--~V  374 (718)
                       .               +...                +.       ...-.||+|.|||.|++|..+|+.+..+|.  +|
T Consensus       617 e~L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a~RlgGakeV  696 (1019)
T PRK09853        617 EQLKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPGVEKV  696 (1019)
T ss_pred             hhheeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHHHhcCCCceE
Confidence             0               0000                00       011258999999999999999999988843  78


Q ss_pred             EEEecCC
Q psy7896         375 IVTEIDP  381 (718)
Q Consensus       375 iv~d~dp  381 (718)
                      +++.+.+
T Consensus       697 TLVyRr~  703 (1019)
T PRK09853        697 TVVYRRT  703 (1019)
T ss_pred             EEEEccC
Confidence            8876544

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.36  E-value=0.00071  Score=69.84  Aligned_cols=85  Identities=24%  Similarity=0.214  Sum_probs=58.6

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCC----------ccHHHHhhc-Cce------ecCHHHHh-cc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDP----------INALQASME-GYE------VTTMEEAA-KE  403 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp----------~~al~a~~~-G~~------v~~Leell-~~  403 (718)
                      +.++.|++|.|+|+|++|+.+|+.|..+|++ |.+.|.+.          ......... +..      ..+-++++ .+
T Consensus        18 ~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~   97 (217)
T cd05211          18 GDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLD   97 (217)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceecc
Confidence            4678999999999999999999999999996 55577766          211111111 111      11223443 37


Q ss_pred             CcEEEEcCCCCCCcCHHHHhcCCCC
Q psy7896         404 GGIFVTTTGCKDIIRGEHFLQMRDD  428 (718)
Q Consensus       404 aDiIi~atgt~~lI~~e~l~~MK~g  428 (718)
                      +|+++.|+.. ++|+.+....++-.
T Consensus        98 ~DVlipaA~~-~~i~~~~a~~l~a~  121 (217)
T cd05211          98 VDIFAPCALG-NVIDLENAKKLKAK  121 (217)
T ss_pred             ccEEeecccc-CccChhhHhhcCcc
Confidence            8999988765 58999988888743

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.34  E-value=0.00085  Score=67.14  Aligned_cols=96  Identities=23%  Similarity=0.194  Sum_probs=64.9

Q ss_pred             cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----cCce-----e---cCHHHHhccCcEEE
Q psy7896         343 DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----EGYE-----V---TTMEEAAKEGGIFV  408 (718)
Q Consensus       343 g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----~G~~-----v---~~Leell~~aDiIi  408 (718)
                      +..++++++.|+|. |.+|+.+++.+...|++|+++.+++.+......     .+..     .   .++.++++++|+|+
T Consensus        23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi  102 (194)
T cd01078          23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF  102 (194)
T ss_pred             CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence            56789999999996 999999999999999999999877644321110     1111     1   12346788999999


Q ss_pred             EcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       409 ~atgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .++..........-...+++.+++++....
T Consensus       103 ~at~~g~~~~~~~~~~~~~~~vv~D~~~~~  132 (194)
T cd01078         103 AAGAAGVELLEKLAWAPKPLAVAADVNAVP  132 (194)
T ss_pred             ECCCCCceechhhhcccCceeEEEEccCCC
Confidence            887543311111222345688999887754

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=97.32  E-value=0.00097  Score=74.80  Aligned_cols=93  Identities=24%  Similarity=0.312  Sum_probs=71.0

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-HhhcCceecCHHH---HhccCcEEEEcCCCC-CCcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-ASMEGYEVTTMEE---AAKEGGIFVTTTGCK-DIIR  418 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a~~~G~~v~~Lee---ll~~aDiIi~atgt~-~lI~  418 (718)
                      +|.++++.|||+|.+|..+|+.|.+.|. +|++.++...++.+ +...|..+.+++|   .+.++|+|+++|+.. .+|+
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~~ii~  254 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPHPIIT  254 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCccccC
Confidence            4899999999999999999999999995 78888888776543 3345666666655   578999999988754 4677


Q ss_pred             HHHHhcC-C--CCeEEEEcCCC
Q psy7896         419 GEHFLQM-R--DDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~M-K--~gAiLIN~GRg  437 (718)
                      .+.+... +  +.-++|++|-.
T Consensus       255 ~~~ve~a~~~r~~~livDiavP  276 (414)
T COG0373         255 REMVERALKIRKRLLIVDIAVP  276 (414)
T ss_pred             HHHHHHHHhcccCeEEEEecCC
Confidence            7766433 2  22678888764

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=97.29  E-value=0.00049  Score=73.15  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=61.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh--CCCEEE-EEecCCccHHHH-hhcC--ceecCHHHHhccCcEEEEcCCCCCCcCHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL--FGSRVI-VTEIDPINALQA-SMEG--YEVTTMEEAAKEGGIFVTTTGCKDIIRGE  420 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~--fGa~Vi-v~d~dp~~al~a-~~~G--~~v~~Leell~~aDiIi~atgt~~lI~~e  420 (718)
                      ...+|||||+|+||+.+++.+..  .++++. +++++|.++.+. ...|  ..+.++++++.++|+|+.++++. ...+-
T Consensus         5 ~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~e~   83 (271)
T PRK13302          5 PELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLRAI   83 (271)
T ss_pred             CeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHHHH
Confidence            45799999999999999999875  588876 678877654322 1223  23568999999999999998764 22222


Q ss_pred             HHhcCCCCeEEEEcCCC
Q psy7896         421 HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRg  437 (718)
                      ....++.|.-+++.+.+
T Consensus        84 ~~~aL~aGk~Vi~~s~g  100 (271)
T PRK13302         84 VEPVLAAGKKAIVLSVG  100 (271)
T ss_pred             HHHHHHcCCcEEEecch
Confidence            24455666655555443

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=97.29  E-value=0.00052  Score=72.52  Aligned_cols=96  Identities=16%  Similarity=0.199  Sum_probs=64.1

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEec-------CCcc--HH--------------HHhhc---Ccee
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEI-------DPIN--AL--------------QASME---GYEV  394 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~-------dp~~--al--------------~a~~~---G~~v  394 (718)
                      .+.+++|+||.|.|+|++|+.+|+.|..+|++|+ +.|.       +-..  ++              .....   +.+.
T Consensus        32 ~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~  111 (254)
T cd05313          32 RNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKY  111 (254)
T ss_pred             cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEE
Confidence            3678999999999999999999999999999999 5541       1111  11              00001   2334


Q ss_pred             cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcCC-CCe-EEEEcCCCC
Q psy7896         395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQMR-DDA-IVCNIGHFD  438 (718)
Q Consensus       395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~MK-~gA-iLIN~GRgd  438 (718)
                      .+-++++ .+|||++.|. ..+.|+.+...+++ +++ +++-.+.+.
T Consensus       112 ~~~~~~~~~~~DIliPcA-l~~~I~~~na~~i~~~~ak~I~EgAN~p  157 (254)
T cd05313         112 FEGKKPWEVPCDIAFPCA-TQNEVDAEDAKLLVKNGCKYVAEGANMP  157 (254)
T ss_pred             eCCcchhcCCCcEEEecc-ccccCCHHHHHHHHHcCCEEEEeCCCCC
Confidence            4555654 3799999874 33689999988884 344 444444443

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.28  E-value=0.0005  Score=74.96  Aligned_cols=97  Identities=16%  Similarity=0.151  Sum_probs=66.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-----------hcC---------ce-ecCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-----------MEG---------YE-VTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-----------~~G---------~~-v~~Leell~~aDiI  407 (718)
                      ++|+|||.|.||..+|..+...|.+|+++|++|.....+.           ..|         .. ..+++++++.||+|
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV   87 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI   87 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence            6899999999999999999999999999999875321100           011         12 34788999999999


Q ss_pred             EEcCC-C---CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         408 VTTTG-C---KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       408 i~atg-t---~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +.+.. +   +..+-++..+.++++++|.....+   +....+.+
T Consensus        88 iEavpE~l~vK~~lf~~l~~~~~~~aIlaSnTS~---l~~s~la~  129 (321)
T PRK07066         88 QESAPEREALKLELHERISRAAKPDAIIASSTSG---LLPTDFYA  129 (321)
T ss_pred             EECCcCCHHHHHHHHHHHHHhCCCCeEEEECCCc---cCHHHHHH
Confidence            98733 2   223335556788999966543332   34444443

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.28  E-value=0.0025  Score=65.66  Aligned_cols=89  Identities=11%  Similarity=0.059  Sum_probs=56.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC---CE-EEEEec-CCccHHHHh-hcCce-ecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG---SR-VIVTEI-DPINALQAS-MEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG---a~-Viv~d~-dp~~al~a~-~~G~~-v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      ..++|+|||.|++|..+++.+...|   .+ ++++++ ++.+..... ..+.. ..+.+++++++|+|++++.....  .
T Consensus         3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~~~~--~   80 (245)
T PRK07634          3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPPSAH--E   80 (245)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCHHHH--H
Confidence            4578999999999999999887665   33 666765 333322221 23443 35688899999999998765422  2


Q ss_pred             HHHhcCC---CCeEEEEcCCC
Q psy7896         420 EHFLQMR---DDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK---~gAiLIN~GRg  437 (718)
                      +.++.++   ++.++|.+.-|
T Consensus        81 ~v~~~l~~~~~~~~vis~~~g  101 (245)
T PRK07634         81 ELLAELSPLLSNQLVVTVAAG  101 (245)
T ss_pred             HHHHHHHhhccCCEEEEECCC
Confidence            3333222   24466666554

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.27  E-value=0.00045  Score=70.63  Aligned_cols=92  Identities=17%  Similarity=0.146  Sum_probs=66.4

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--C-HHHHhccCcEEEEcCCCCCCcC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--T-MEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~-Leell~~aDiIi~atgt~~lI~  418 (718)
                      .+++||+|.|||.|.+|..-++.|...|++|++++.++...++.. ..| +...  + -.+.+..+|+|+.+|+.. -+|
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~-~ln   83 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDE-ELN   83 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCH-HHH
Confidence            368999999999999999999999999999999987665443322 222 2221  1 135577899999998874 345


Q ss_pred             HHHHhcCCCCeEEEEcCC
Q psy7896         419 GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GR  436 (718)
                      .......+.-.++||+.-
T Consensus        84 ~~i~~~a~~~~ilvn~~d  101 (205)
T TIGR01470        84 RRVAHAARARGVPVNVVD  101 (205)
T ss_pred             HHHHHHHHHcCCEEEECC
Confidence            556666666678888653

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PRK08818 prephenate dehydrogenase; Provisional

Probab=97.26  E-value=0.0036  Score=69.59  Aligned_cols=84  Identities=14%  Similarity=0.110  Sum_probs=62.7

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHh-CCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCC---cCHHH
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRL-FGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDI---IRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~-fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~l---I~~e~  421 (718)
                      ...||+|||+ |.||..+|+.++. +|.+|+++|++.        +  ...+.++.++++|+|++|+.-..+   +. +.
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d--------~--~~~~~~~~v~~aDlVilavPv~~~~~~l~-~l   71 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPAD--------P--GSLDPATLLQRADVLIFSAPIRHTAALIE-EY   71 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCc--------c--ccCCHHHHhcCCCEEEEeCCHHHHHHHHH-HH
Confidence            4579999999 9999999999985 588999997631        1  123577889999999998764322   22 11


Q ss_pred             H---hcCCCCeEEEEcCCCCccc
Q psy7896         422 F---LQMRDDAIVCNIGHFDCEI  441 (718)
Q Consensus       422 l---~~MK~gAiLIN~GRgd~Ei  441 (718)
                      .   ..+|+++++.++|....++
T Consensus        72 ~~~~~~l~~~~iVtDVgSvK~~i   94 (370)
T PRK08818         72 VALAGGRAAGQLWLDVTSIKQAP   94 (370)
T ss_pred             hhhhcCCCCCeEEEECCCCcHHH
Confidence            1   2379999999999976433

>PLN02858 fructose-bisphosphate aldolase

Probab=97.25  E-value=0.0007  Score=86.19  Aligned_cols=92  Identities=15%  Similarity=0.091  Sum_probs=71.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCCCC----CCc--CH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTGCK----DII--RG  419 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atgt~----~lI--~~  419 (718)
                      ..++||+||+|++|..+|+.|...|.+|+++|+++.+.......|. ...+..++++++|+|+++..+.    .++  ..
T Consensus       323 ~~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~  402 (1378)
T PLN02858        323 PVKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDL  402 (1378)
T ss_pred             CCCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchh
Confidence            4689999999999999999999999999999988765433333454 3457889999999999975532    233  22


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      ..++.|++|.++|+++-.+
T Consensus       403 g~~~~l~~g~ivVd~STvs  421 (1378)
T PLN02858        403 GAVSALPAGASIVLSSTVS  421 (1378)
T ss_pred             hHHhcCCCCCEEEECCCCC
Confidence            3567889999999998754

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=97.25  E-value=0.00073  Score=75.59  Aligned_cols=89  Identities=20%  Similarity=0.197  Sum_probs=64.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------------------hcC-cee-cCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------------------MEG-YEV-TTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------------------~~G-~~v-~~Leell~~aDiI  407 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.+.....                   ..| ... .+.+++++++|+|
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advv   80 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVI   80 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEE
Confidence            3799999999999999999999999999998876432111                   123 222 4678889999999


Q ss_pred             EEcCCCCC----------CcC--HHHHhcCCCCeEEEEcCCC
Q psy7896         408 VTTTGCKD----------IIR--GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       408 i~atgt~~----------lI~--~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++.++..          +..  ....+.++++.++++.+-.
T Consensus        81 ii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv  122 (411)
T TIGR03026        81 IICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTV  122 (411)
T ss_pred             EEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcC
Confidence            99866532          211  2234568999999998753

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=97.24  E-value=0.00071  Score=72.04  Aligned_cols=88  Identities=19%  Similarity=0.276  Sum_probs=61.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-----------hcC-------------ce-ecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-----------MEG-------------YE-VTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-----------~~G-------------~~-v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|             .. ..+++ .+++
T Consensus         5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~   83 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD   83 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence            6899999999999999999999999999998875422111           112             12 23454 5789


Q ss_pred             CcEEEEcCCCC----CCcCHHHHhcCCCCeEEE-EcCCC
Q psy7896         404 GGIFVTTTGCK----DIIRGEHFLQMRDDAIVC-NIGHF  437 (718)
Q Consensus       404 aDiIi~atgt~----~lI~~e~l~~MK~gAiLI-N~GRg  437 (718)
                      +|+|+.+....    ..+-.+....++++++++ |++..
T Consensus        84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~  122 (292)
T PRK07530         84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI  122 (292)
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC
Confidence            99999986442    122233445679999887 77664

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.22  E-value=0.0018  Score=70.42  Aligned_cols=99  Identities=22%  Similarity=0.239  Sum_probs=72.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHHHh-----hcCce---ecCHHHHhccCcEEEEcCCCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQAS-----MEGYE---VTTMEEAAKEGGIFVTTTGCKDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~a~-----~~G~~---v~~Leell~~aDiIi~atgt~~l  416 (718)
                      ..++++|||.|.+|+..++.+. ..+. +|.++++++.+..+..     ..+..   +.+++++++++|+|+++|...+-
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~p  205 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKTP  205 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCCc
Confidence            5789999999999998887664 5676 6888998886543211     12333   45789999999999999876554


Q ss_pred             cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      +-  . +.+|+|+.++.+|..   ..|+|.+.+..
T Consensus       206 ~i--~-~~l~~G~hV~~iGs~~p~~~E~~~~~~~~  237 (325)
T PRK08618        206 VF--S-EKLKKGVHINAVGSFMPDMQELPSEAIAR  237 (325)
T ss_pred             ch--H-HhcCCCcEEEecCCCCcccccCCHHHHhh
Confidence            32  2 567999999999874   35777665554

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.22  E-value=0.0011  Score=78.51  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=34.0

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ..|++|+|||.|+.|+.+|..|++.|..|+++|..+.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4799999999999999999999999999999997653

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=97.21  E-value=0.0008  Score=71.96  Aligned_cols=89  Identities=18%  Similarity=0.147  Sum_probs=63.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--------------Cce-ecCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME--------------GYE-VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--------------G~~-v~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|.+|..+|..+..-|.+|+++++++....+....              +.. ..+.+++++.+|+|++++.+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~   81 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS   81 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence            479999999999999999999999999999887543222222              222 34677888999999998765


Q ss_pred             CCCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDII--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..+-  -.+....++++.+++++..+
T Consensus        82 ~~~~~v~~~l~~~~~~~~~vi~~~ng  107 (325)
T PRK00094         82 QALREVLKQLKPLLPPDAPIVWATKG  107 (325)
T ss_pred             HHHHHHHHHHHhhcCCCCEEEEEeec
Confidence            3221  11223455788899988643

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.20  E-value=0.00025  Score=64.54  Aligned_cols=88  Identities=20%  Similarity=0.211  Sum_probs=58.9

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--ecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--VTTMEEAAKEGGIFVTTTGCKDIIRGEH  421 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--v~~Leell~~aDiIi~atgt~~lI~~e~  421 (718)
                      ..++|++|.|||.|++|..-++.|...|++|+++.++. ...+   ..+.  ...+++.+..+|+|+.+|++. -++.+.
T Consensus         3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~-~~~~---~~i~~~~~~~~~~l~~~~lV~~at~d~-~~n~~i   77 (103)
T PF13241_consen    3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI-EFSE---GLIQLIRREFEEDLDGADLVFAATDDP-ELNEAI   77 (103)
T ss_dssp             E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE-HHHH---TSCEEEESS-GGGCTTESEEEE-SS-H-HHHHHH
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch-hhhh---hHHHHHhhhHHHHHhhheEEEecCCCH-HHHHHH
Confidence            36899999999999999999999999999999997664 1111   1121  224456678889999888774 345555


Q ss_pred             HhcCCCCeEEEEcCC
Q psy7896         422 FLQMRDDAIVCNIGH  436 (718)
Q Consensus       422 l~~MK~gAiLIN~GR  436 (718)
                      ....+.--+++|+.-
T Consensus        78 ~~~a~~~~i~vn~~D   92 (103)
T PF13241_consen   78 YADARARGILVNVVD   92 (103)
T ss_dssp             HHHHHHTTSEEEETT
T ss_pred             HHHHhhCCEEEEECC
Confidence            555565667777643

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=97.20  E-value=0.00075  Score=77.52  Aligned_cols=88  Identities=14%  Similarity=0.030  Sum_probs=67.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh----cCc----eecCHHHHhcc---CcEEEEcCCC----C
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM----EGY----EVTTMEEAAKE---GGIFVTTTGC----K  414 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~----~G~----~v~~Leell~~---aDiIi~atgt----~  414 (718)
                      +||+||+|.+|+.+|+.|..-|.+|.+||+++.+......    .|.    ...+++|+++.   +|+|+++-.+    .
T Consensus         8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~   87 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD   87 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence            6999999999999999999999999999998865432221    143    24578888875   9999987433    2


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .++ ...+..|++|.++|++|...
T Consensus        88 ~Vi-~gl~~~l~~G~iiID~sT~~  110 (493)
T PLN02350         88 QTI-KALSEYMEPGDCIIDGGNEW  110 (493)
T ss_pred             HHH-HHHHhhcCCCCEEEECCCCC
Confidence            234 34578899999999998864

>PLN02858 fructose-bisphosphate aldolase

Probab=97.20  E-value=0.00081  Score=85.59  Aligned_cols=92  Identities=18%  Similarity=0.107  Sum_probs=71.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----Cc-C-H
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----II-R-G  419 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI-~-~  419 (718)
                      ..++||+||+|++|..+|++|..-|.+|.+||+++.+.......|.. ..+..|+.+.||+|+++-.+..    ++ . .
T Consensus         3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~   82 (1378)
T PLN02858          3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE   82 (1378)
T ss_pred             CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence            46789999999999999999999999999999988765444445654 4579999999999998743322    22 2 2


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      ..++.+++|.++|+++-.+
T Consensus        83 g~~~~l~~g~iivd~STi~  101 (1378)
T PLN02858         83 GAAKGLQKGAVILIRSTIL  101 (1378)
T ss_pred             hHHhcCCCcCEEEECCCCC
Confidence            3456789999999998653

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.18  E-value=0.0011  Score=81.65  Aligned_cols=115  Identities=22%  Similarity=0.204  Sum_probs=73.6

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL-------  334 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~-------  334 (718)
                      ..+++|+|||.|+.|+++|+.|+++|+.|+++|..+.....  .....|+++++.   ....+..+|+++...       
T Consensus       535 ~~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~IP~~rlp~e~l~~~ie~l~~~GVe~~~g~~~d~~v  614 (1012)
T TIGR03315       535 SSAHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNIIPEFRISAESIQKDIELVKFHGVEFKYGCSPDLTV  614 (1012)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeecccccCCCHHHHHHHHHHHHhcCcEEEEecccceEh
Confidence            35789999999999999999999999999999976532111  111223333321   223333344443100       


Q ss_pred             ch---------------hhh----------------hhh-------cccccCcEEEEEecChhHHHHHHHHHhC-CC-EE
Q psy7896         335 TE---------------DQA----------------KYL-------DIMLAGKVAVVAGYGDVGKGCAQSLRLF-GS-RV  374 (718)
Q Consensus       335 ~~---------------~~~----------------~~~-------g~eL~GktVGIIG~G~IG~~vA~~l~~f-Ga-~V  374 (718)
                      ..               +..                .+.       .....||+|.|||.|++|..+|+.+..+ |+ +|
T Consensus       615 e~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kV  694 (1012)
T TIGR03315       615 AELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVEKV  694 (1012)
T ss_pred             hhhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHHHHHhCCCceE
Confidence            00               000                000       0123689999999999999999999877 87 68


Q ss_pred             EEEecCC
Q psy7896         375 IVTEIDP  381 (718)
Q Consensus       375 iv~d~dp  381 (718)
                      +++.+++
T Consensus       695 tLVyRr~  701 (1012)
T TIGR03315       695 TVVYRRT  701 (1012)
T ss_pred             EEEEccC
Confidence            8876543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK09414 glutamate dehydrogenase; Provisional

Probab=97.17  E-value=0.00083  Score=76.13  Aligned_cols=91  Identities=18%  Similarity=0.179  Sum_probs=63.0

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEE-e----------cCCccHHH----------Hhhc--CceecCHH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT-E----------IDPINALQ----------ASME--GYEVTTME  398 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~-d----------~dp~~al~----------a~~~--G~~v~~Le  398 (718)
                      .+.+++|+||.|.|+|+||+.+|+.|..+|++|+++ |          .|+....+          ....  |.+..+.+
T Consensus       226 ~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~  305 (445)
T PRK09414        226 RGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGG  305 (445)
T ss_pred             cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCc
Confidence            367899999999999999999999999999999976 6          33321111          0000  22233445


Q ss_pred             HHhc-cCcEEEEcCCCCCCcCHHHHhcCC-CCeEEEE
Q psy7896         399 EAAK-EGGIFVTTTGCKDIIRGEHFLQMR-DDAIVCN  433 (718)
Q Consensus       399 ell~-~aDiIi~atgt~~lI~~e~l~~MK-~gAiLIN  433 (718)
                      +++. +|||++.|+. .+.|+.+....++ +++.+|-
T Consensus       306 ~i~~~d~DVliPaAl-~n~It~~~a~~i~~~~akiIv  341 (445)
T PRK09414        306 SPWSVPCDIALPCAT-QNELDEEDAKTLIANGVKAVA  341 (445)
T ss_pred             cccccCCcEEEecCC-cCcCCHHHHHHHHHcCCeEEE
Confidence            5544 7999999865 3689998887773 3454443

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.16  E-value=0.0018  Score=68.66  Aligned_cols=91  Identities=12%  Similarity=0.104  Sum_probs=63.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHHHH--hhcCce-ecCHHHHhccCcEEEEcCCCCCCcC-
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINALQA--SMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIR-  418 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a--~~~G~~-v~~Leell~~aDiIi~atgt~~lI~-  418 (718)
                      ++++|+|||+|++|..+++.+..-|    .+|+++++++....+.  ...|.. ..+..++++++|+|+++.....+.. 
T Consensus         2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~p~~~~~v   81 (279)
T PRK07679          2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMKPKDVAEA   81 (279)
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeCHHHHHHH
Confidence            4579999999999999999998877    6789998765332222  123554 3467888999999999865543311 


Q ss_pred             -HHHHhcCCCCeEEEEcCCC
Q psy7896         419 -GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 -~e~l~~MK~gAiLIN~GRg  437 (718)
                       .+....++++.++|.+.-+
T Consensus        82 l~~l~~~~~~~~liIs~~aG  101 (279)
T PRK07679         82 LIPFKEYIHNNQLIISLLAG  101 (279)
T ss_pred             HHHHHhhcCCCCEEEEECCC
Confidence             2223446788899997443

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.15  E-value=0.0014  Score=68.52  Aligned_cols=86  Identities=10%  Similarity=0.049  Sum_probs=59.7

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCE---EEEEecCCccHHHHhh-c-Ccee-cCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSR---VIVTEIDPINALQASM-E-GYEV-TTMEEAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~---Viv~d~dp~~al~a~~-~-G~~v-~~Leell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      +|||||+|++|+.+++.+...|-.   +.++++++.+..+... . |... .+..++++++|+|++++....+  .+.+.
T Consensus         2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~p~~~--~~vl~   79 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVRPQIA--EEVLR   79 (258)
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeCHHHH--HHHHH
Confidence            799999999999999999877743   5778777654332222 2 3443 5788899999999998764332  12222


Q ss_pred             --cCCCCeEEEEcCCC
Q psy7896         424 --QMRDDAIVCNIGHF  437 (718)
Q Consensus       424 --~MK~gAiLIN~GRg  437 (718)
                        .++++.++|.+.-+
T Consensus        80 ~l~~~~~~~vis~~ag   95 (258)
T PRK06476         80 ALRFRPGQTVISVIAA   95 (258)
T ss_pred             HhccCCCCEEEEECCC
Confidence              24678888887754

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=97.13  E-value=0.001  Score=64.87  Aligned_cols=88  Identities=18%  Similarity=0.201  Sum_probs=59.7

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--HHHhh------cCc------e-ecCHHHHhccCcEEEEcCCCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASM------EGY------E-VTTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l~a~~------~G~------~-v~~Leell~~aDiIi~atgt~  414 (718)
                      +|+|+|.|+.|.++|..+...|.+|.++.+++...  +....      .+.      . ..+++++++.+|+|+++..+.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~   80 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ   80 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence            68999999999999999999999999998876422  11111      111      1 247899999999999987665


Q ss_pred             CC--cCHHHHhcCCCCeEEEEcCCC
Q psy7896         415 DI--IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ~l--I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+  +-++....++++..++++..|
T Consensus        81 ~~~~~~~~l~~~l~~~~~ii~~~KG  105 (157)
T PF01210_consen   81 AHREVLEQLAPYLKKGQIIISATKG  105 (157)
T ss_dssp             GHHHHHHHHTTTSHTT-EEEETS-S
T ss_pred             HHHHHHHHHhhccCCCCEEEEecCC
Confidence            43  122233455788899998766

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.12  E-value=0.0015  Score=77.53  Aligned_cols=114  Identities=22%  Similarity=0.290  Sum_probs=70.6

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhcccccc--------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTK--------  333 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~--------  333 (718)
                      ..+++|+|||.|+.|+.+|..|+.+|++|+++|..+...-.  .....|.+++.+   ....+..+|+++..        
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~~dv  270 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMRYGIPRFRLPESVIDADIAPLRAMGAEFRFNTVFGRDI  270 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeecCCCCCCCHHHHHHHHHHHHHcCCEEEeCCcccCcc
Confidence            46899999999999999999999999999999976542100  000112222111   11122222222110        


Q ss_pred             --------c-------chhhh-----------------hhh------cccccCcEEEEEecChhHHHHHHHHHhCCC-EE
Q psy7896         334 --------L-------TEDQA-----------------KYL------DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RV  374 (718)
Q Consensus       334 --------~-------~~~~~-----------------~~~------g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~V  374 (718)
                              +       ..+..                 .+.      .....||+|.|||.|++|..+|+.+..+|+ +|
T Consensus       271 ~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~A~~l~~~Ga~~V  350 (652)
T PRK12814        271 TLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLGAESV  350 (652)
T ss_pred             CHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHHHHHHHHcCCCeE
Confidence                    0       00000                 000      113468999999999999999999999998 58


Q ss_pred             EEEecC
Q psy7896         375 IVTEID  380 (718)
Q Consensus       375 iv~d~d  380 (718)
                      +++.+.
T Consensus       351 tlv~r~  356 (652)
T PRK12814        351 TILYRR  356 (652)
T ss_pred             EEeeec
Confidence            876543

>PLN02477 glutamate dehydrogenase

Probab=97.12  E-value=0.0011  Score=74.40  Aligned_cols=87  Identities=17%  Similarity=0.294  Sum_probs=60.5

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecC----------CccHHHHh--------hcCceecCHHHHh-
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEID----------PINALQAS--------MEGYEVTTMEEAA-  401 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~d----------p~~al~a~--------~~G~~v~~Leell-  401 (718)
                      .|.+++|++|.|.|+|+||+.+|+.|...|++|+ +.|.+          +....+..        ..+.+..+-++++ 
T Consensus       200 ~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~  279 (410)
T PLN02477        200 HGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILV  279 (410)
T ss_pred             cCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCcccee
Confidence            4678999999999999999999999999999999 66654          11111100        0122333445553 


Q ss_pred             ccCcEEEEcCCCCCCcCHHHHhcCCCCe
Q psy7896         402 KEGGIFVTTTGCKDIIRGEHFLQMRDDA  429 (718)
Q Consensus       402 ~~aDiIi~atgt~~lI~~e~l~~MK~gA  429 (718)
                      .++||++.|.- .+.|+++...++|...
T Consensus       280 ~~~DvliP~Al-~~~I~~~na~~i~ak~  306 (410)
T PLN02477        280 EPCDVLIPAAL-GGVINKENAADVKAKF  306 (410)
T ss_pred             ccccEEeeccc-cccCCHhHHHHcCCcE
Confidence            47999998752 3489999998886543

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.10  E-value=0.0016  Score=66.97  Aligned_cols=88  Identities=22%  Similarity=0.156  Sum_probs=63.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH----hhcCceecCHHHHhccCcEEEEcCCCCCCc--CHHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA----SMEGYEVTTMEEAAKEGGIFVTTTGCKDII--RGEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a----~~~G~~v~~Leell~~aDiIi~atgt~~lI--~~e~l  422 (718)
                      ++++|+|.|+||..+|+++...|.+|++-.++..+++.+    ........+.+++.+.+|+|+++..-..+.  .++..
T Consensus         2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a~~~v~~~l~   81 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEAIPDVLAELR   81 (211)
T ss_pred             cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHHHHhHHHHHH
Confidence            589999999999999999999999999985444333322    222344567889999999999986544332  23333


Q ss_pred             hcCCCCeEEEEcCCC
Q psy7896         423 LQMRDDAIVCNIGHF  437 (718)
Q Consensus       423 ~~MK~gAiLIN~GRg  437 (718)
                      ..+. |.++|++...
T Consensus        82 ~~~~-~KIvID~tnp   95 (211)
T COG2085          82 DALG-GKIVIDATNP   95 (211)
T ss_pred             HHhC-CeEEEecCCC
Confidence            4454 7888887664

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=97.09  E-value=0.00093  Score=76.38  Aligned_cols=89  Identities=12%  Similarity=0.063  Sum_probs=66.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh----cCc---eecCHHHHhc---cCcEEEEc-CCC---C
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM----EGY---EVTTMEEAAK---EGGIFVTT-TGC---K  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~----~G~---~v~~Leell~---~aDiIi~a-tgt---~  414 (718)
                      .+|||||+|.+|..+|+.|..-|.+|.+||+++.+..+...    .|.   ...+++|+++   ++|+|+++ +..   .
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~   81 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD   81 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence            37999999999999999999999999999998875332221    143   2457889886   48977765 322   3


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .++ .+.+..+++|.++|++|.+.
T Consensus        82 ~vi-~~l~~~L~~g~iIID~gn~~  104 (470)
T PTZ00142         82 ETI-DNLLPLLEKGDIIIDGGNEW  104 (470)
T ss_pred             HHH-HHHHhhCCCCCEEEECCCCC
Confidence            344 34567889999999999864

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.09  E-value=0.00097  Score=68.00  Aligned_cols=91  Identities=18%  Similarity=0.213  Sum_probs=61.4

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--CH-HHHhccCcEEEEcCCCCCCcC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--TM-EEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~L-eell~~aDiIi~atgt~~lI~  418 (718)
                      .++.||+|.|||.|.+|...++.|...|++|++++++....+... ..+ ....  .+ ++.+..+|+|+.+|++. -+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~-elN   84 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDP-RVN   84 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCH-HHH
Confidence            468999999999999999999999999999999976654433222 222 2221  22 34577899999998874 334


Q ss_pred             HHHHhcCCCCeEEEEcCC
Q psy7896         419 GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GR  436 (718)
                      .......+.+ +++|+.-
T Consensus        85 ~~i~~~a~~~-~lvn~~d  101 (202)
T PRK06718         85 EQVKEDLPEN-ALFNVIT  101 (202)
T ss_pred             HHHHHHHHhC-CcEEECC
Confidence            3333333444 5777643

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.09  E-value=0.0027  Score=69.25  Aligned_cols=99  Identities=21%  Similarity=0.176  Sum_probs=71.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-C-CCEEEEEecCCccHHH--Hh--hcCce---ecCHHHHhccCcEEEEcCCC-CCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-F-GSRVIVTEIDPINALQ--AS--MEGYE---VTTMEEAAKEGGIFVTTTGC-KDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-f-Ga~Viv~d~dp~~al~--a~--~~G~~---v~~Leell~~aDiIi~atgt-~~l  416 (718)
                      .-+++||||.|.+|+..++.+.. + .-+|.++++++.+...  ..  ..|..   +.+.+++++++|+|+++|.. ..+
T Consensus       127 ~~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~~P~  206 (325)
T TIGR02371       127 DSSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSRKPV  206 (325)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCCCcE
Confidence            35899999999999987766543 2 3479999988865422  11  22422   45799999999999998754 345


Q ss_pred             cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      +..+   .+|+|+.+.++|..   ..|+|.+.+..
T Consensus       207 ~~~~---~l~~g~~v~~vGs~~p~~~Eld~~~l~~  238 (325)
T TIGR02371       207 VKAD---WVSEGTHINAIGADAPGKQELDPEILKN  238 (325)
T ss_pred             ecHH---HcCCCCEEEecCCCCcccccCCHHHHhc
Confidence            6543   56999999999953   35788766654

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.08  E-value=0.00057  Score=65.03  Aligned_cols=89  Identities=21%  Similarity=0.253  Sum_probs=54.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEe-cCCccHHHHh--hcCceecCHHHHhccCcEEEEcCCCCCCcC--HHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE-IDPINALQAS--MEGYEVTTMEEAAKEGGIFVTTTGCKDIIR--GEHF  422 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d-~dp~~al~a~--~~G~~v~~Leell~~aDiIi~atgt~~lI~--~e~l  422 (718)
                      -.+|+|||.|++|..+++.|..-|..|..+. +++..+..+.  ..+..+.+++|+++++|++++++....+ .  .+.+
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDdaI-~~va~~L   88 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDDAI-AEVAEQL   88 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CCHH-HHHHHHH
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechHHH-HHHHHHH
Confidence            3689999999999999999999999988763 4343332222  2234566788999999999998765432 2  1234


Q ss_pred             hc---CCCCeEEEEcCCC
Q psy7896         423 LQ---MRDDAIVCNIGHF  437 (718)
Q Consensus       423 ~~---MK~gAiLIN~GRg  437 (718)
                      ..   .++|.+++-++-.
T Consensus        89 a~~~~~~~g~iVvHtSGa  106 (127)
T PF10727_consen   89 AQYGAWRPGQIVVHTSGA  106 (127)
T ss_dssp             HCC--S-TT-EEEES-SS
T ss_pred             HHhccCCCCcEEEECCCC
Confidence            33   5789999988653

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=97.08  E-value=0.0019  Score=73.00  Aligned_cols=114  Identities=23%  Similarity=0.287  Sum_probs=70.3

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL-------  334 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~-------  334 (718)
                      ..+++++|||.|+.|+.+|..|+.+|..|+++|..+.....  -....+.+..++   ....+..+++.+...       
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v  217 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLRYGIPEFRLPKDIVDREVERLLKLGVEIRTNTEVGRDI  217 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEeeccCCCccCCHHHHHHHHHHHHHcCCEEEeCCEECCcc
Confidence            46899999999999999999999999999999976432100  000011111111   111122222221100       


Q ss_pred             ----------------chhhh-----------------hhh-c-------cc-ccCcEEEEEecChhHHHHHHHHHhCCC
Q psy7896         335 ----------------TEDQA-----------------KYL-D-------IM-LAGKVAVVAGYGDVGKGCAQSLRLFGS  372 (718)
Q Consensus       335 ----------------~~~~~-----------------~~~-g-------~e-L~GktVGIIG~G~IG~~vA~~l~~fGa  372 (718)
                                      .....                 .+. .       .. ..|++|.|||.|.+|..+|..+..+|+
T Consensus       218 ~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g~e~A~~l~~~G~  297 (457)
T PRK11749        218 TLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKRLGA  297 (457)
T ss_pred             CHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHHHHHHHHHHHcCC
Confidence                            00000                 000 0       11 258999999999999999999999999


Q ss_pred             -EEEEEecC
Q psy7896         373 -RVIVTEID  380 (718)
Q Consensus       373 -~Viv~d~d  380 (718)
                       +|+++.+.
T Consensus       298 ~~Vtlv~~~  306 (457)
T PRK11749        298 ESVTIVYRR  306 (457)
T ss_pred             CeEEEeeec
Confidence             89988654

>PRK14031 glutamate dehydrogenase; Provisional

Probab=97.07  E-value=0.0015  Score=74.12  Aligned_cols=93  Identities=22%  Similarity=0.338  Sum_probs=64.7

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEE-Ee----------cCCccH-------------HHHh--hcCceec
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV-TE----------IDPINA-------------LQAS--MEGYEVT  395 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv-~d----------~dp~~a-------------l~a~--~~G~~v~  395 (718)
                      .|.+|+|+||.|.|+|++|+..|+.|..+|++|++ .|          .|+...             +...  ..+..+.
T Consensus       222 ~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i  301 (444)
T PRK14031        222 KGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV  301 (444)
T ss_pred             cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEc
Confidence            36789999999999999999999999999999997 45          222110             0000  0133444


Q ss_pred             CHHHHh-ccCcEEEEcCCCCCCcCHHHHhcCCC-CeEEEEcC
Q psy7896         396 TMEEAA-KEGGIFVTTTGCKDIIRGEHFLQMRD-DAIVCNIG  435 (718)
Q Consensus       396 ~Leell-~~aDiIi~atgt~~lI~~e~l~~MK~-gAiLIN~G  435 (718)
                      +-++++ ..|||++.|.- .+.|+.+...+++. ++.+|--|
T Consensus       302 ~~d~~~~~~cDIliPaAl-~n~I~~~na~~l~a~g~~~V~Eg  342 (444)
T PRK14031        302 EGARPWGEKGDIALPSAT-QNELNGDDARQLVANGVIAVSEG  342 (444)
T ss_pred             CCcccccCCCcEEeeccc-ccccCHHHHHHHHhcCCeEEECC
Confidence            555654 36999998754 36899999999866 45444443

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.06  E-value=0.0019  Score=73.46  Aligned_cols=37  Identities=32%  Similarity=0.359  Sum_probs=33.7

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ..+++++|||.|+.|+.+|..|+++|.+|+++|..+.
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~  177 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADR  177 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            4688999999999999999999999999999997653

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=97.05  E-value=0.0012  Score=78.90  Aligned_cols=90  Identities=21%  Similarity=0.247  Sum_probs=66.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHHHHhhcCce---ecCHHHHhccCcEEEEcCCCCCCcC--HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINALQASMEGYE---VTTMEEAAKEGGIFVTTTGCKDIIR--GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al~a~~~G~~---v~~Leell~~aDiIi~atgt~~lI~--~e~  421 (718)
                      ++|+|||+|.+|..+++.++..|  .+|+++|+++.+...+...|..   ..+++++++++|+|++++....+..  .+.
T Consensus         4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~vl~~l   83 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVLAMEKVLADL   83 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHHHHHHHHHHH
Confidence            68999999999999999999888  5899999887654444445542   3467888999999999876532211  122


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      -..++++.++++++...
T Consensus        84 ~~~~~~~~ii~d~~svk  100 (735)
T PRK14806         84 KPLLSEHAIVTDVGSTK  100 (735)
T ss_pred             HHhcCCCcEEEEcCCCc
Confidence            23457889999998754

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=97.04  E-value=0.0023  Score=70.16  Aligned_cols=84  Identities=23%  Similarity=0.209  Sum_probs=61.7

Q ss_pred             EEEEecChhHHHHHHHHHh-CCCEEEE-EecCCccHH-HHhhcCce------------------e-cCHHHHhccCcEEE
Q psy7896         351 AVVAGYGDVGKGCAQSLRL-FGSRVIV-TEIDPINAL-QASMEGYE------------------V-TTMEEAAKEGGIFV  408 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~-fGa~Viv-~d~dp~~al-~a~~~G~~------------------v-~~Leell~~aDiIi  408 (718)
                      |||+|||+||+.+++.+.. -+++|+. .|.+|.... -+...|+.                  + .++++++..+|+|+
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv   80 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV   80 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence            6899999999999998764 4677665 565554211 11111221                  1 25889999999999


Q ss_pred             EcCC-CCCCcCHHHHhcCCCCeEEEEc
Q psy7896         409 TTTG-CKDIIRGEHFLQMRDDAIVCNI  434 (718)
Q Consensus       409 ~atg-t~~lI~~e~l~~MK~gAiLIN~  434 (718)
                      .+|+ +.+..+++.+.+|+.+++|+-.
T Consensus        81 e~Tp~~~~~~na~~~~~~GakaVl~~~  107 (333)
T TIGR01546        81 DATPGGIGAKNKPLYEKAGVKAIFQGG  107 (333)
T ss_pred             ECCCCCCChhhHHHHHhCCcCEEEECC
Confidence            9876 5789999999999999999853

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.02  E-value=0.0017  Score=69.11  Aligned_cols=71  Identities=15%  Similarity=0.246  Sum_probs=52.6

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhh--cC---cee-cCHHHHhccCcEEEEcCCC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASM--EG---YEV-TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~--~G---~~v-~~Leell~~aDiIi~atgt  413 (718)
                      +..+.++++.|+|.|.+|++++..|..+| .+|+++++++.++.....  ..   ..+ .++.+.+.++|+||.+|..
T Consensus       118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~  195 (278)
T PRK00258        118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSA  195 (278)
T ss_pred             CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcC
Confidence            45688999999999999999999999999 699999988765422111  11   122 2345677889999988653

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=97.02  E-value=0.0013  Score=70.48  Aligned_cols=99  Identities=22%  Similarity=0.283  Sum_probs=67.9

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH--HHhhcCcee---cCH-HHHhccCcEEEEcCCC---CCCcC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASMEGYEV---TTM-EEAAKEGGIFVTTTGC---KDIIR  418 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al--~a~~~G~~v---~~L-eell~~aDiIi~atgt---~~lI~  418 (718)
                      -++|+|+|+|.||..+|+.++.-|..|.+++.|.....  .+...|...   .+. .+.++.+|+|++++.-   ..++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi~~~~~~l~   82 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPIEATEEVLK   82 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccHHHHHHHHH
Confidence            46899999999999999999999999988877765432  222233321   222 5677889999998652   22222


Q ss_pred             HHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         419 GEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                       +....+|+|+++.+++.....+ ++++..
T Consensus        83 -~l~~~l~~g~iv~Dv~S~K~~v-~~a~~~  110 (279)
T COG0287          83 -ELAPHLKKGAIVTDVGSVKSSV-VEAMEK  110 (279)
T ss_pred             -HhcccCCCCCEEEecccccHHH-HHHHHH
Confidence             2333789999999999976332 344443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.01  E-value=0.0023  Score=75.77  Aligned_cols=37  Identities=32%  Similarity=0.422  Sum_probs=34.3

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ..|++++|||.|+.|+.+|..|+++|+.|+++|..+.
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            4699999999999999999999999999999997764

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=97.00  E-value=0.0018  Score=72.15  Aligned_cols=95  Identities=24%  Similarity=0.314  Sum_probs=68.0

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc------------------cH-HHHhhcCceecCHHHHhc
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI------------------NA-LQASMEGYEVTTMEEAAK  402 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~------------------~a-l~a~~~G~~v~~Leell~  402 (718)
                      .+..|+|+||.|-|+|++|+.+|+.+..+|++|++++...-                  +. ......|.++.+-++++.
T Consensus       201 ~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~  280 (411)
T COG0334         201 LGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLE  280 (411)
T ss_pred             cCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEcccccccc
Confidence            45569999999999999999999999999999999764432                  00 001122344555577764


Q ss_pred             -cCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         403 -EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       403 -~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                       +|||++.|. ..+.|+.+...++|.. +++-.+.++
T Consensus       281 ~~cDIl~PcA-~~n~I~~~na~~l~ak-~V~EgAN~P  315 (411)
T COG0334         281 VDCDILIPCA-LENVITEDNADQLKAK-IVVEGANGP  315 (411)
T ss_pred             ccCcEEcccc-cccccchhhHHHhhhc-EEEeccCCC
Confidence             799998763 3357999999999888 555555554

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=96.96  E-value=0.003  Score=72.30  Aligned_cols=36  Identities=33%  Similarity=0.400  Sum_probs=33.1

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  302 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp  302 (718)
                      ..|++++|||.|+.|+.+|..|++.|..|++++..+
T Consensus       141 ~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~  176 (485)
T TIGR01317       141 RTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED  176 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCC
Confidence            367899999999999999999999999999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.96  E-value=0.0013  Score=69.03  Aligned_cols=91  Identities=22%  Similarity=0.365  Sum_probs=64.6

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEE--------ecCCccH--HHH--hhcC-------------ceecCHH
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT--------EIDPINA--LQA--SMEG-------------YEVTTME  398 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~--------d~dp~~a--l~a--~~~G-------------~~v~~Le  398 (718)
                      .+++|++|.|.|+|++|+.+|+.|...|++|+.+        |++....  +..  ...|             ..+.+-+
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~  107 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND  107 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence            4599999999999999999999999999998775        5444321  111  0111             1223332


Q ss_pred             -HHh-ccCcEEEEcCCCCCCcCHHHHh-cCCCCeEEEEcC
Q psy7896         399 -EAA-KEGGIFVTTTGCKDIIRGEHFL-QMRDDAIVCNIG  435 (718)
Q Consensus       399 -ell-~~aDiIi~atgt~~lI~~e~l~-~MK~gAiLIN~G  435 (718)
                       +++ .++||++.| ...+.|+.+... .++.++.+|--|
T Consensus       108 ~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~~akiIveg  146 (244)
T PF00208_consen  108 DEILSVDCDILIPC-ALGNVINEDNAPSLIKSGAKIIVEG  146 (244)
T ss_dssp             CHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHTT-SEEEES
T ss_pred             cccccccccEEEEc-CCCCeeCHHHHHHHHhccCcEEEeC
Confidence             666 489999998 445789999999 999888666544

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>PRK06141 ornithine cyclodeaminase; Validated

Probab=96.96  E-value=0.0039  Score=67.61  Aligned_cols=99  Identities=22%  Similarity=0.239  Sum_probs=68.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CC-CEEEEEecCCccHHHHhh----cC--ce-ecCHHHHhccCcEEEEcCCC-CCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FG-SRVIVTEIDPINALQASM----EG--YE-VTTMEEAAKEGGIFVTTTGC-KDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fG-a~Viv~d~dp~~al~a~~----~G--~~-v~~Leell~~aDiIi~atgt-~~l  416 (718)
                      ..++|+|||.|..|+..++.+.. ++ -+|.++++++.+..+...    .|  +. +.+.+++++++|+|+++|.. ..+
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~~pv  203 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLSTEPL  203 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCCCCE
Confidence            57899999999999999985543 55 479999998865432211    13  22 35788899999999987654 345


Q ss_pred             cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      +..   +.+++|+.+.-+|..   ..|++.+.+..
T Consensus       204 l~~---~~l~~g~~i~~ig~~~~~~~El~~~~~~~  235 (314)
T PRK06141        204 VRG---EWLKPGTHLDLVGNFTPDMRECDDEAIRR  235 (314)
T ss_pred             ecH---HHcCCCCEEEeeCCCCcccccCCHHHHhc
Confidence            654   457999965556653   24677555443

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.95  E-value=0.0025  Score=71.77  Aligned_cols=91  Identities=10%  Similarity=0.144  Sum_probs=66.8

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh-hcC-ceecC---HHHHhccCcEEEEcCCCCC-Cc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS-MEG-YEVTT---MEEAAKEGGIFVTTTGCKD-II  417 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~-~~G-~~v~~---Leell~~aDiIi~atgt~~-lI  417 (718)
                      .+.|++|.|||.|.+|+.+++.|...|+ +++++.+++.++.... ..+ ..+.+   +.+++.++|+||.+|+..+ +|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~vi  257 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEYIV  257 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCeeE
Confidence            4789999999999999999999999996 7999988876543221 112 23333   4566889999999987654 57


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+.+.  ...-++|+.+-.
T Consensus       258 ~~~~~~--~~~~~~iDLavP  275 (414)
T PRK13940        258 TCKYVG--DKPRVFIDISIP  275 (414)
T ss_pred             CHHHhC--CCCeEEEEeCCC
Confidence            766543  234678888764

>PRK07680 late competence protein ComER; Validated

Probab=96.95  E-value=0.0018  Score=68.35  Aligned_cols=96  Identities=21%  Similarity=0.253  Sum_probs=65.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHHHHhh--cCcee-cCHHHHhccCcEEEEcCCCCCCcC--HH
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINALQASM--EGYEV-TTMEEAAKEGGIFVTTTGCKDIIR--GE  420 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a~~--~G~~v-~~Leell~~aDiIi~atgt~~lI~--~e  420 (718)
                      +|+|||+|++|..+++.+...|    .+|.++++++.+......  .|... .+..++++.+|+|+++.....+..  ++
T Consensus         2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~p~~~~~vl~~   81 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVKPLDIYPLLQK   81 (273)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecCHHHHHHHHHH
Confidence            6999999999999999998877    379999888754322221  15543 467788899999999864332211  12


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ....++++.+++.+.-+   +..+.|..
T Consensus        82 l~~~l~~~~~iis~~ag---~~~~~L~~  106 (273)
T PRK07680         82 LAPHLTDEHCLVSITSP---ISVEQLET  106 (273)
T ss_pred             HHhhcCCCCEEEEECCC---CCHHHHHH
Confidence            22356778889988754   34555554

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.95  E-value=0.0024  Score=68.02  Aligned_cols=88  Identities=20%  Similarity=0.206  Sum_probs=61.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------------------------hcCce-ecCHHHHhc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------------------------MEGYE-VTTMEEAAK  402 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------------------------~~G~~-v~~Leell~  402 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+.                         ..... ..+++++++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~   83 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK   83 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence            5899999999999999999999999999998875321110                         01222 346888899


Q ss_pred             cCcEEEEcCCCC----CCcCHHHHhcCCCCeEEE-EcCC
Q psy7896         403 EGGIFVTTTGCK----DIIRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       403 ~aDiIi~atgt~----~lI~~e~l~~MK~gAiLI-N~GR  436 (718)
                      .+|+|+.+..+.    .-+-++....++++++|+ |++.
T Consensus        84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt  122 (287)
T PRK08293         84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST  122 (287)
T ss_pred             CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc
Confidence            999999985532    112223345678888884 5544

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=96.93  E-value=0.0033  Score=71.69  Aligned_cols=37  Identities=35%  Similarity=0.511  Sum_probs=34.0

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ..|++++|||.|++|+.+|..|+.+|..|+++|..+.
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~  175 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHPE  175 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCC
Confidence            4789999999999999999999999999999997763

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=96.91  E-value=0.0022  Score=72.14  Aligned_cols=88  Identities=13%  Similarity=0.111  Sum_probs=62.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-ee--cCHHHHh---------------ccCcEEEEc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EV--TTMEEAA---------------KEGGIFVTT  410 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v--~~Leell---------------~~aDiIi~a  410 (718)
                      ++|+|||+|.+|..+|..|...|.+|+++|+++.+... ...|. .+  ..+++++               +.+|+++++
T Consensus         4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~-l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~   82 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDT-INRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIA   82 (415)
T ss_pred             cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHH-HHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEE
Confidence            68999999999999999999999999999998865432 22221 11  1344442               379999998


Q ss_pred             CCCC----------CCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TGCK----------DII--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~----------~lI--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .++.          .+.  -......+++|+++|+.+-.
T Consensus        83 vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv  121 (415)
T PRK11064         83 VPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTS  121 (415)
T ss_pred             cCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCC
Confidence            6653          121  12334668999999998764

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.90  E-value=0.0027  Score=68.30  Aligned_cols=65  Identities=17%  Similarity=0.211  Sum_probs=50.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcCc--------------eecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEGY--------------EVTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G~--------------~v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+           ...|.              ...++.+++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~   82 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD   82 (308)
T ss_pred             cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence            479999999999999999999999999999887532211           12231              23578889999


Q ss_pred             CcEEEEcCCC
Q psy7896         404 GGIFVTTTGC  413 (718)
Q Consensus       404 aDiIi~atgt  413 (718)
                      +|+|+.+...
T Consensus        83 ad~Vi~avpe   92 (308)
T PRK06129         83 ADYVQESAPE   92 (308)
T ss_pred             CCEEEECCcC
Confidence            9999998654

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=96.89  E-value=0.0027  Score=73.04  Aligned_cols=88  Identities=22%  Similarity=0.189  Sum_probs=60.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-------------------hcC-ce-ecCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-------------------MEG-YE-VTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-------------------~~G-~~-v~~Leell~~aDiI  407 (718)
                      ++|+|||.|.+|..+|..+..-|.+|+++|++|.......                   ..| .. ..++.+++++||+|
T Consensus         5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V   84 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI   84 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence            5899999999999999999999999999999876431110                   112 22 34788999999999


Q ss_pred             EEcCCCCC----CcCHHHHhcCCCCeEEEEcCC
Q psy7896         408 VTTTGCKD----IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       408 i~atgt~~----lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +.+....-    .+-.+.-+.++++++|+....
T Consensus        85 ieavpe~~~vk~~l~~~l~~~~~~~~iI~SsTs  117 (495)
T PRK07531         85 QESVPERLDLKRRVLAEIDAAARPDALIGSSTS  117 (495)
T ss_pred             EEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence            98754431    111222245688876654443

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=96.87  E-value=0.0038  Score=67.73  Aligned_cols=98  Identities=22%  Similarity=0.246  Sum_probs=59.6

Q ss_pred             CcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHH---Hhhc-Cce---ecCHHHHhccCcEEEEcCCCCC---
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQ---ASME-GYE---VTTMEEAAKEGGIFVTTTGCKD---  415 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~---a~~~-G~~---v~~Leell~~aDiIi~atgt~~---  415 (718)
                      -++++|||.|..|+.-++.+.. ++. +|.++++++.++..   .... |+.   +.+.++++++||+|+++|....   
T Consensus       128 ~~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~P  207 (313)
T PF02423_consen  128 ARTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPAP  207 (313)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEEE
T ss_pred             CceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCCc
Confidence            4699999999999999887754 666 79999998864321   1122 443   3479999999999999876544   


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      +++.+   .+|+|+.++.+|..   ..|+|.+.+..
T Consensus       208 ~~~~~---~l~~g~hi~~iGs~~~~~~El~~~~~~~  240 (313)
T PF02423_consen  208 VFDAE---WLKPGTHINAIGSYTPGMRELDDELLKR  240 (313)
T ss_dssp             SB-GG---GS-TT-EEEE-S-SSTTBESB-HHHHHC
T ss_pred             cccHH---HcCCCcEEEEecCCCCchhhcCHHHhcc
Confidence            67754   67999999999974   25777665554

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.86  E-value=0.0027  Score=71.93  Aligned_cols=89  Identities=18%  Similarity=0.333  Sum_probs=62.3

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEE--------EecCCccH-----HHHh-------------h-cCceec
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV--------TEIDPINA-----LQAS-------------M-EGYEVT  395 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv--------~d~dp~~a-----l~a~-------------~-~G~~v~  395 (718)
                      |.++.|+||.|.|+|++|+.+|+.|..+|++|++        +|.+-...     +...             . .|.+..
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i  302 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF  302 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence            6789999999999999999999999999999998        77332221     1000             0 133444


Q ss_pred             CHHHHhc-cCcEEEEcCCCCCCcCHHHHhcC-CCCeEEE
Q psy7896         396 TMEEAAK-EGGIFVTTTGCKDIIRGEHFLQM-RDDAIVC  432 (718)
Q Consensus       396 ~Leell~-~aDiIi~atgt~~lI~~e~l~~M-K~gAiLI  432 (718)
                      +-++++. .|||++.|. ..+.|+.+...++ +.++.+|
T Consensus       303 ~~~~~~~~~cDVliPcA-l~n~I~~~na~~l~~~~ak~V  340 (445)
T PRK14030        303 AGKKPWEQKVDIALPCA-TQNELNGEDADKLIKNGVLCV  340 (445)
T ss_pred             CCccceeccccEEeecc-ccccCCHHHHHHHHHcCCeEE
Confidence            4555543 699998874 3368999888888 3345444

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.85  E-value=0.0033  Score=67.33  Aligned_cols=87  Identities=21%  Similarity=0.171  Sum_probs=60.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-----------HhhcCc--------------eecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-----------ASMEGY--------------EVTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-----------a~~~G~--------------~v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|++|.....           ....|.              ...++ +.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~   84 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD   84 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence            48999999999999999999999999999998864322           122221              13356 55799


Q ss_pred             CcEEEEcCCC----CCCcCHHHHhcC--CCCeEEEEcCCC
Q psy7896         404 GGIFVTTTGC----KDIIRGEHFLQM--RDDAIVCNIGHF  437 (718)
Q Consensus       404 aDiIi~atgt----~~lI~~e~l~~M--K~gAiLIN~GRg  437 (718)
                      +|+|+.+...    +..+-. .++.+  +++++++.....
T Consensus        85 ~d~ViEav~E~~~~K~~l~~-~l~~~~~~~~~il~snTS~  123 (286)
T PRK07819         85 RQLVIEAVVEDEAVKTEIFA-ELDKVVTDPDAVLASNTSS  123 (286)
T ss_pred             CCEEEEecccCHHHHHHHHH-HHHHhhCCCCcEEEECCCC
Confidence            9999987432    111221 44555  789988876553

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.84  E-value=0.0028  Score=71.92  Aligned_cols=94  Identities=20%  Similarity=0.287  Sum_probs=65.0

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecC-----C--c--cHH--------------HHhhc---Ccee
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEID-----P--I--NAL--------------QASME---GYEV  394 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~d-----p--~--~al--------------~a~~~---G~~v  394 (718)
                      .+.+++||||.|-|+|++|+.+|+.|..+|++|+ +.|.+     |  +  ..+              .....   |.++
T Consensus       231 ~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~  310 (454)
T PTZ00079        231 LNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY  310 (454)
T ss_pred             cCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence            3778999999999999999999999999999998 66655     1  1  011              00001   2333


Q ss_pred             cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcC-CCCeEEEEcCC
Q psy7896         395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQM-RDDAIVCNIGH  436 (718)
Q Consensus       395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~M-K~gAiLIN~GR  436 (718)
                      .+-++++ -.|||++.|. +.+.|+.+....+ +.++.+|-=|-
T Consensus       311 ~~~~~~~~~~cDI~iPcA-~~n~I~~~~a~~l~~~~ak~V~EgA  353 (454)
T PTZ00079        311 VPGKKPWEVPCDIAFPCA-TQNEINLEDAKLLIKNGCKLVAEGA  353 (454)
T ss_pred             eCCcCcccCCccEEEecc-ccccCCHHHHHHHHHcCCeEEEecC
Confidence            3444444 3699998874 3468999888766 66776665443

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.84  E-value=0.037  Score=59.71  Aligned_cols=102  Identities=16%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEc-CCC-----------
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTT-TGC-----------  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~a-tgt-----------  413 (718)
                      .|++++|||.=.=-..++++|...|++|.++.-+. ...  ...|.... +.+++++++|+++.- +++           
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~-~~~--~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~   77 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ-LDH--GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFS   77 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc-ccc--ccCCceeeccHHHHhccCCEEEECCccccCCceeecccc
Confidence            37899999998888999999999999999864321 111  12366665 568889999999864 221           


Q ss_pred             --CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccce
Q psy7896         414 --KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEK  453 (718)
Q Consensus       414 --~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~  453 (718)
                        .--++.+.++.||++..++ +|.++..++ +.+.+.++..
T Consensus        78 ~~~~~~~~~~l~~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~  117 (296)
T PRK08306         78 NEKLVLTEELLELTPEHCTIF-SGIANPYLK-ELAKETNRKL  117 (296)
T ss_pred             ccCCcchHHHHHhcCCCCEEE-EecCCHHHH-HHHHHCCCeE
Confidence              1124678899999998555 577764444 4444444433

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=96.84  E-value=0.0036  Score=66.69  Aligned_cols=96  Identities=20%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH--------------hhcCc-------------ee-cCHHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA--------------SMEGY-------------EV-TTMEEA  400 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a--------------~~~G~-------------~v-~~Leel  400 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+              ...|.             .. .++ +.
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~   82 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES   82 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence            689999999999999999999999999999887542111              00111             12 234 56


Q ss_pred             hccCcEEEEcCCCCCCcCHH----HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         401 AKEGGIFVTTTGCKDIIRGE----HFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       401 l~~aDiIi~atgt~~lI~~e----~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++++|+|+.+....--+..+    .-+.++++++++....+   +....+.+
T Consensus        83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg---~~~~~la~  131 (291)
T PRK06035         83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG---IMIAEIAT  131 (291)
T ss_pred             hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC---CCHHHHHh
Confidence            78999999986543211222    22456888988876554   34444543

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.82  E-value=0.0033  Score=67.41  Aligned_cols=88  Identities=16%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----cC--------------ce-ecCHHHHhccCcEEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----EG--------------YE-VTTMEEAAKEGGIFV  408 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----~G--------------~~-v~~Leell~~aDiIi  408 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++........     .|              .. ..+.+++++++|+|+
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi   84 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI   84 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence            68999999999999999999999999999987753211110     01              12 246778899999999


Q ss_pred             EcCCCCCC----cCHHHHhcCCCCeEEE-EcCC
Q psy7896         409 TTTGCKDI----IRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       409 ~atgt~~l----I~~e~l~~MK~gAiLI-N~GR  436 (718)
                      .+....--    +-.+.-...+++++++ |++.
T Consensus        85 ~av~~~~~~~~~v~~~l~~~~~~~~ii~s~tsg  117 (311)
T PRK06130         85 EAVPEKLELKRDVFARLDGLCDPDTIFATNTSG  117 (311)
T ss_pred             EeccCcHHHHHHHHHHHHHhCCCCcEEEECCCC
Confidence            98654321    1112223457777764 5543

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.81  E-value=0.0073  Score=64.72  Aligned_cols=68  Identities=21%  Similarity=0.257  Sum_probs=50.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh---c---Ccee---cCHHHHhccCcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM---E---GYEV---TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~---~---G~~v---~~Leell~~aDiIi~atg  412 (718)
                      .+.+|+|.|+|.|.+|++++..|...|+ +|+++++++.++.....   .   ...+   .++.+.++++|+||.+|.
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp  201 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATP  201 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCc
Confidence            4578999999999999999999999998 79999998765432111   1   1122   234556788999998864

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=96.81  E-value=0.0073  Score=65.86  Aligned_cols=99  Identities=22%  Similarity=0.212  Sum_probs=72.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHHHh-----hcCcee---cCHHHHhccCcEEEEcCCC-CC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQAS-----MEGYEV---TTMEEAAKEGGIFVTTTGC-KD  415 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~a~-----~~G~~v---~~Leell~~aDiIi~atgt-~~  415 (718)
                      ..++++|||.|..|+..++.+. .++. +|.++++++.++....     ..|+.+   .+++++++++|+|+++|.. ..
T Consensus       128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~p  207 (326)
T TIGR02992       128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSETP  207 (326)
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCCc
Confidence            4689999999999999999886 4775 6999999886543211     114433   4688999999999998764 34


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      +|..+   .+|+|+.+..+|..   ..|+|.+.+..
T Consensus       208 ~i~~~---~l~~g~~i~~vg~~~p~~rEld~~~l~~  240 (326)
T TIGR02992       208 ILHAE---WLEPGQHVTAMGSDAEHKNEIDPAVIAK  240 (326)
T ss_pred             EecHH---HcCCCcEEEeeCCCCCCceecCHHHHhc
Confidence            56654   47899998888852   35677666554

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.80  E-value=0.0032  Score=72.00  Aligned_cols=86  Identities=17%  Similarity=0.174  Sum_probs=63.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc---C--c-eecCHHHHh---ccCcEEEEcCCC----CCCc
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---G--Y-EVTTMEEAA---KEGGIFVTTTGC----KDII  417 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~---G--~-~v~~Leell---~~aDiIi~atgt----~~lI  417 (718)
                      |||||+|.+|..+|+.+..-|.+|+++|+++.+..+....   |  . ...++++++   +.+|+|+++...    ..++
T Consensus         2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi   81 (467)
T TIGR00873         2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI   81 (467)
T ss_pred             EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence            8999999999999999999999999999988654333222   2  2 234677766   468988876332    2334


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                       .+.+..+++|.++|++|..
T Consensus        82 -~~l~~~L~~g~iIID~gns  100 (467)
T TIGR00873        82 -NQLLPLLEKGDIIIDGGNS  100 (467)
T ss_pred             -HHHHhhCCCCCEEEECCCc
Confidence             3455678999999999875

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=96.80  E-value=0.0019  Score=74.60  Aligned_cols=89  Identities=20%  Similarity=0.247  Sum_probs=62.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------ce-ecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YE-VTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~-v~~Leell~~  403 (718)
                      ++|||||.|.+|..+|+.+..-|.+|+++|+++.....+           ...|             .. ..++++ ++.
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~   86 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD   86 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence            689999999999999999999999999999988643221           2234             12 245655 569


Q ss_pred             CcEEEEcCCC----CCCcCHHHHhcCCCCeEEE-EcCCCC
Q psy7896         404 GGIFVTTTGC----KDIIRGEHFLQMRDDAIVC-NIGHFD  438 (718)
Q Consensus       404 aDiIi~atgt----~~lI~~e~l~~MK~gAiLI-N~GRgd  438 (718)
                      ||+|+.+...    +..+-.+.-..++++++++ |++..+
T Consensus        87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~  126 (507)
T PRK08268         87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLS  126 (507)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCC
Confidence            9999987433    2222222224468999994 998754

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.79  E-value=0.0033  Score=61.69  Aligned_cols=89  Identities=18%  Similarity=0.130  Sum_probs=57.5

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--cCHH-HHhccCcEEEEcCCCCCCcCH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--TTME-EAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--~~Le-ell~~aDiIi~atgt~~lI~~  419 (718)
                      ..+|+|++|.|||.|++|...++.|...|++|++++++....+... ....+  ..++ +-+..+|+|+.+|++.. +|.
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~~l-~~i~~~~~~~~~~dl~~a~lViaaT~d~e-~N~   85 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMKEL-PYITWKQKTFSNDDIKDAHLIYAATNQHA-VNM   85 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHHhc-cCcEEEecccChhcCCCceEEEECCCCHH-HHH
Confidence            3578999999999999999999999999999999964433333221 12221  1222 23677899888887643 333


Q ss_pred             HHHhcCCCCeEEEEc
Q psy7896         420 EHFLQMRDDAIVCNI  434 (718)
Q Consensus       420 e~l~~MK~gAiLIN~  434 (718)
                      .....-+.. .++|+
T Consensus        86 ~i~~~a~~~-~~vn~   99 (157)
T PRK06719         86 MVKQAAHDF-QWVNV   99 (157)
T ss_pred             HHHHHHHHC-CcEEE
Confidence            222222333 35664

>PLN02852 ferredoxin-NADP+ reductase

Probab=96.78  E-value=0.0039  Score=71.77  Aligned_cols=38  Identities=29%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHh--cCCeEEEeecCchh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRL--FGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra--~Gv~VtV~D~dp~r  304 (718)
                      ..+++|+|||.||.|+.+|+.|++  .|+.|+++|..|..
T Consensus        24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            467899999999999999999987  89999999987743

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=96.75  E-value=0.0033  Score=71.09  Aligned_cols=89  Identities=18%  Similarity=0.179  Sum_probs=63.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-----------------eecCHHHHhccCcEEEEc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-----------------EVTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-----------------~v~~Leell~~aDiIi~a  410 (718)
                      -++|+|||+|.+|..+|..+.. |.+|+++|+++.+.... ..|.                 ...+-.+.+++||+++++
T Consensus         6 ~mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l-~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~   83 (425)
T PRK15182          6 EVKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILEL-KNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIIT   83 (425)
T ss_pred             CCeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHH-HCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEE
Confidence            3789999999999999999876 79999999998653322 2332                 233334578899999988


Q ss_pred             CCCC----------CCcC--HHHHhcCCCCeEEEEcCCCC
Q psy7896         411 TGCK----------DIIR--GEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       411 tgt~----------~lI~--~e~l~~MK~gAiLIN~GRgd  438 (718)
                      -+|.          .+..  ....+.+++|.++|+.+-..
T Consensus        84 Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~  123 (425)
T PRK15182         84 VPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVY  123 (425)
T ss_pred             cCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCC
Confidence            5543          1221  22346789999999987653

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.74  E-value=0.04  Score=59.82  Aligned_cols=169  Identities=17%  Similarity=0.093  Sum_probs=111.1

Q ss_pred             cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcc
Q psy7896         250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGV  329 (718)
Q Consensus       250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv  329 (718)
                      +-+||+.|.+.--.. .   -.+.|+.. +-.-.+...++.-+++|++...+...=.|+.++-|.+-+            
T Consensus        83 ~kgEsl~Dt~~~l~~-~---~D~iv~R~-~~~~~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e------------  145 (304)
T PRK00779         83 GRGEPIEDTARVLSR-Y---VDAIMIRT-FEHETLEELAEYSTVPVINGLTDLSHPCQILADLLTIYE------------  145 (304)
T ss_pred             CCCcCHHHHHHHHHH-h---CCEEEEcC-CChhHHHHHHHhCCCCEEeCCCCCCChHHHHHHHHHHHH------------
Confidence            457888876653211 1   12333332 222233445566678998887655566677777665532            


Q ss_pred             cccccchhhhhhhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccH---H-H--HhhcCce---ecCHHH
Q psy7896         330 KLTKLTEDQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA---L-Q--ASMEGYE---VTTMEE  399 (718)
Q Consensus       330 ~~~~~~~~~~~~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~a---l-~--a~~~G~~---v~~Lee  399 (718)
                                 ..| .+.|++|+++|- +++.+..+..+..+|++|.++-+.....   . +  +...|..   ..++++
T Consensus       146 -----------~~g-~l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~  213 (304)
T PRK00779        146 -----------HRG-SLKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKE  213 (304)
T ss_pred             -----------HhC-CcCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHH
Confidence                       123 478999999998 7899999999999999999985432211   1 0  2223432   358999


Q ss_pred             HhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHh
Q psy7896         400 AAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLD  447 (718)
Q Consensus       400 ll~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~  447 (718)
                      +++.+|+|.+..    +            ...-++.+.++.+|+++++.-++-  -++|++.+-+.
T Consensus       214 a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~~V~~  279 (304)
T PRK00779        214 AVKGADVVYTDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTDEVID  279 (304)
T ss_pred             HhCCCCEEEecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccHHHhC
Confidence            999999998741    1            234588899999999999999876  23577765444

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.73  E-value=0.0021  Score=66.59  Aligned_cols=66  Identities=23%  Similarity=0.294  Sum_probs=51.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCce--------ecCHHHH-hccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYE--------VTTMEEA-AKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~--------v~~Leel-l~~aDiIi~atgt~  414 (718)
                      |++.|||+|++|+.+|+.|...|.+|+++|.|+.+..+...  .+..        ...|.++ +.++|+++.+|++.
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d   77 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND   77 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC
Confidence            57999999999999999999999999999999977555222  2222        2246666 78899999888763

>PRK06046 alanine dehydrogenase; Validated

Probab=96.73  E-value=0.0081  Score=65.49  Aligned_cols=97  Identities=24%  Similarity=0.301  Sum_probs=69.8

Q ss_pred             CcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHHHhh-----cCce---ecCHHHHhccCcEEEEcCCCC-CC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQASM-----EGYE---VTTMEEAAKEGGIFVTTTGCK-DI  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~a~~-----~G~~---v~~Leell~~aDiIi~atgt~-~l  416 (718)
                      -++|+|||.|.+|+..++.+. -.+. +|.++++++.+..+...     .++.   +.+.+++++ +|+|+++|.+. -+
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~~P~  207 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSRKPV  207 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCCCcE
Confidence            579999999999999998776 3566 57778888765332111     1432   347889887 99999987653 45


Q ss_pred             cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      +..+   .+|+|+.+..+|..   ..|+|.+.+..
T Consensus       208 ~~~~---~l~~g~hV~~iGs~~p~~~El~~~~~~~  239 (326)
T PRK06046        208 VKAE---WIKEGTHINAIGADAPGKQELDPEILLR  239 (326)
T ss_pred             ecHH---HcCCCCEEEecCCCCCccccCCHHHHhC
Confidence            6654   56999999999963   36788776654

>PLN02527 aspartate carbamoyltransferase

Probab=96.70  E-value=0.049  Score=59.20  Aligned_cols=170  Identities=16%  Similarity=0.095  Sum_probs=108.3

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHL  327 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~l  327 (718)
                      .|.+||+.|...--...    -.+.|+....-+. +...++.-.++|++.-. +...=.|+.++-|.+.+          
T Consensus        80 ~~kgEs~~Dta~vls~y----~D~iviR~~~~~~-~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e----------  144 (306)
T PLN02527         80 AAKGETLEDTIRTVEGY----SDIIVLRHFESGA-ARRAAATAEIPVINAGDGPGQHPTQALLDVYTIQR----------  144 (306)
T ss_pred             cCCCcCHHHHHHHHHHh----CcEEEEECCChhH-HHHHHHhCCCCEEECCCCCCCChHHHHHHHHHHHH----------
Confidence            45579988765532221    2244555433333 33455666788888733 34555566666665422          


Q ss_pred             cccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhC-CCEEEEEecCCcc---HH--HHhhcCce---ec
Q psy7896         328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLF-GSRVIVTEIDPIN---AL--QASMEGYE---VT  395 (718)
Q Consensus       328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~f-Ga~Viv~d~dp~~---al--~a~~~G~~---v~  395 (718)
                                   ..| .+.|++|++||-+   ++....+..+..| |++|.++-+....   ..  .+...|..   ..
T Consensus       145 -------------~~g-~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~  210 (306)
T PLN02527        145 -------------EIG-RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS  210 (306)
T ss_pred             -------------HhC-CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence                         123 4889999999976   6889999988887 9999987543221   11  11223433   35


Q ss_pred             CHHHHhccCcEEEEcCC----------------CCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         396 TMEEAAKEGGIFVTTTG----------------CKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       396 ~Leell~~aDiIi~atg----------------t~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      +++++++.+|+|.+...                ....|+.+.++..|+++++.-+.--..|++.+.+.
T Consensus       211 d~~~a~~~aDvvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~~V~d  278 (306)
T PLN02527        211 DLMEVASKCDVLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITTDVDS  278 (306)
T ss_pred             CHHHHhCCCCEEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccHHHhC
Confidence            89999999999998421                12458888888999999998877544577755443

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=96.70  E-value=0.041  Score=59.75  Aligned_cols=185  Identities=18%  Similarity=0.126  Sum_probs=119.1

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+--+++.+.+..      ..+-+||+.|.+.-....    -.+.|+.. +-.-.+...++.-+++|++...+...=.|+
T Consensus        64 LGg~~i~l~~~~s------s~~kgEsl~Dt~~vls~y----~D~iv~R~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQa  132 (304)
T TIGR00658        64 LGGHPLYLNPNDL------QLGRGESIKDTARVLSRY----VDGIMARV-YKHEDVEELAKYASVPVINGLTDLFHPCQA  132 (304)
T ss_pred             cCCCEEEeCCccc------cCCCCCCHHHHHHHHHHh----CCEEEEEC-CChHHHHHHHHhCCCCEEECCCCCCChHHH
Confidence            4555666643322      124479988876532221    22344443 333334455666788999887666666677


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccH---
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA---  384 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~a---  384 (718)
                      .++-|.+.+                       ..| .+.|.+|+++|- +++.+..+..+..||++|.++-+.....   
T Consensus       133 L~Dl~Ti~e-----------------------~~g-~l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~  188 (304)
T TIGR00658       133 LADLLTIIE-----------------------HFG-KLKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDAD  188 (304)
T ss_pred             HHHHHHHHH-----------------------HhC-CCCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHH
Confidence            777665432                       123 388999999998 6789999999999999999985432211   


Q ss_pred             -H-H----HhhcCc--e-ecCHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--
Q psy7896         385 -L-Q----ASMEGY--E-VTTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF--  437 (718)
Q Consensus       385 -l-~----a~~~G~--~-v~~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg--  437 (718)
                       . +    +...|.  . ..+++++++.+|+|.+-.    +            ....++.+.++.+|+++++.-++-.  
T Consensus       189 ~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHplP~~r  268 (304)
T TIGR00658       189 IVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCLPAHR  268 (304)
T ss_pred             HHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCCCCCC
Confidence             0 0    122342  2 368999999999998731    1            1236999999999999999988764  


Q ss_pred             CccccHHHHhc
Q psy7896         438 DCEIQVSWLDK  448 (718)
Q Consensus       438 d~Eid~~aL~~  448 (718)
                      ++|++.+-+..
T Consensus       269 g~Ei~~~V~d~  279 (304)
T TIGR00658       269 GEEVTDEVIEG  279 (304)
T ss_pred             CceeCHHHhCC
Confidence            35777654443

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=96.66  E-value=0.0045  Score=67.91  Aligned_cols=89  Identities=19%  Similarity=0.260  Sum_probs=66.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--c-----CHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--T-----TMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--~-----~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      .|++|+|+|+|-.|....+.++++|++|+++++++.+...+...|...  .     .++++-+.+|+++.+.+ ...++ 
T Consensus       166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~-  243 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLE-  243 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHH-
Confidence            599999999999999999999999999999999987765555555431  1     12233334888887766 44444 


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      ..++.+|.+..++-+|-.
T Consensus       244 ~~l~~l~~~G~~v~vG~~  261 (339)
T COG1064         244 PSLKALRRGGTLVLVGLP  261 (339)
T ss_pred             HHHHHHhcCCEEEEECCC
Confidence            567888888888887775

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=96.66  E-value=0.0045  Score=65.59  Aligned_cols=87  Identities=20%  Similarity=0.236  Sum_probs=58.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-----------HHhhcC-------------ce-ecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-----------QASMEG-------------YE-VTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-----------~a~~~G-------------~~-v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|++|....           .....|             .. ..+.+ .+++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~   82 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD   82 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence            5799999999999999999999999999998876431           111222             22 23444 4789


Q ss_pred             CcEEEEcCCCCCC----cCHHHHhcCCCCeEE-EEcCC
Q psy7896         404 GGIFVTTTGCKDI----IRGEHFLQMRDDAIV-CNIGH  436 (718)
Q Consensus       404 aDiIi~atgt~~l----I~~e~l~~MK~gAiL-IN~GR  436 (718)
                      ||+|+.+....-.    +-++..+.++++++| .|++.
T Consensus        83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~  120 (282)
T PRK05808         83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS  120 (282)
T ss_pred             CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            9999988532111    222233467888888 44444

>KOG0409|consensus

Probab=96.66  E-value=0.0036  Score=67.29  Aligned_cols=67  Identities=18%  Similarity=0.214  Sum_probs=56.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~atgt  413 (718)
                      .-++||.||+|+.|..++..|-..|.+|+|||++..+..+....|.++. +..|+.+.||+++++-++
T Consensus        34 s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~  101 (327)
T KOG0409|consen   34 SKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPN  101 (327)
T ss_pred             ccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCC
Confidence            4689999999999999999999999999999998766544445676654 688999999999997544

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=96.63  E-value=0.005  Score=71.10  Aligned_cols=89  Identities=20%  Similarity=0.269  Sum_probs=61.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcCc--------------eecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEGY--------------EVTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G~--------------~v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|+.+...|.+|+++|+++.....+           ...|.              ...++++ +++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~   84 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD   84 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence            679999999999999999999999999999987643211           12231              1345654 569


Q ss_pred             CcEEEEcCCCCCCcC----HHHHhcCCCCeEEE-EcCCCC
Q psy7896         404 GGIFVTTTGCKDIIR----GEHFLQMRDDAIVC-NIGHFD  438 (718)
Q Consensus       404 aDiIi~atgt~~lI~----~e~l~~MK~gAiLI-N~GRgd  438 (718)
                      ||+|+.+-...--+.    .+.-..++++++|+ |++..+
T Consensus        85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~  124 (503)
T TIGR02279        85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLS  124 (503)
T ss_pred             CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCC
Confidence            999998743321122    22234578899887 887753

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=96.62  E-value=0.0044  Score=63.45  Aligned_cols=88  Identities=24%  Similarity=0.280  Sum_probs=59.5

Q ss_pred             cEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--------cCc----eecCHHHHhccCcEEEEcCCCCC
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--------EGY----EVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--------~G~----~v~~Leell~~aDiIi~atgt~~  415 (718)
                      ++|+||| .|++|+.+++.+...|.+|+++++++.+......        .|+    ...+..++++++|+|+++.....
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~~   80 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWDH   80 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHHH
Confidence            4799997 8999999999999999999999888754321111        122    22366788999999999866543


Q ss_pred             CcCH-HHHh-cCCCCeEEEEcCCC
Q psy7896         416 IIRG-EHFL-QMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~-e~l~-~MK~gAiLIN~GRg  437 (718)
                      +-.. +.+. .++ +.++|++.-+
T Consensus        81 ~~~~l~~l~~~l~-~~vvI~~~ng  103 (219)
T TIGR01915        81 VLKTLESLRDELS-GKLVISPVVP  103 (219)
T ss_pred             HHHHHHHHHHhcc-CCEEEEeccC
Confidence            2110 1232 233 4788887655

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.61  E-value=0.044  Score=59.54  Aligned_cols=170  Identities=18%  Similarity=0.133  Sum_probs=108.3

Q ss_pred             cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      +.+||+-|.+.--..   -|-.++|+.. +--..+...++.-.++|++.-. +...=.|+.++-|.+.+           
T Consensus        85 ~kgEs~~Dta~vls~---y~~D~iv~R~-~~~~~~~~~a~~~~vPVINa~~g~~~HPtQ~LaDl~Ti~e-----------  149 (305)
T PRK00856         85 SKGETLADTIRTLSA---MGADAIVIRH-PQSGAARLLAESSDVPVINAGDGSHQHPTQALLDLLTIRE-----------  149 (305)
T ss_pred             CCCcCHHHHHHHHHh---cCCCEEEEeC-CChHHHHHHHHHCCCCEEECCCCCCCCcHHHHHHHHHHHH-----------
Confidence            567888776543211   2233444442 2222333445556789988743 34555566666655421           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEec---ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCc
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGY---GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG  405 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~---G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aD  405 (718)
                                  ..| .++|++|++||-   +++....+..+..||++|.++-+....... ...-....+++++++.+|
T Consensus       150 ------------~~G-~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~-~~~~~~~~d~~ea~~~aD  215 (305)
T PRK00856        150 ------------EFG-RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEG-MPEYGVHTDLDEVIEDAD  215 (305)
T ss_pred             ------------HhC-CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCccc-ccceEEECCHHHHhCCCC
Confidence                        123 488999999998   589999999999999999998543322111 111123468999999999


Q ss_pred             EEEEcCC-----------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896         406 IFVTTTG-----------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK  448 (718)
Q Consensus       406 iIi~atg-----------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~  448 (718)
                      +|.+...                 ....++++.++..|+++++.-+.-  -..|++.+-+..
T Consensus       216 vvyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~V~d~  277 (305)
T PRK00856        216 VVMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASDVADG  277 (305)
T ss_pred             EEEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHHHhCC
Confidence            9987521                 123588999999999999988854  235777554443

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=96.60  E-value=0.048  Score=59.14  Aligned_cols=171  Identities=18%  Similarity=0.130  Sum_probs=109.4

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHL  327 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~l  327 (718)
                      .|.+||+-|...--.. .   -.++|+.-.. -..+...++.-+++|++.-. +...=.|++++-|.+.+          
T Consensus        79 ~~kgEsi~Dta~vls~-y---~D~iviR~~~-~~~~~~~a~~s~vPVINa~~g~~~HPtQ~LaDl~Ti~e----------  143 (301)
T TIGR00670        79 VAKGETLADTIKTLSG-Y---SDAIVIRHPL-EGAARLAAEVSEVPVINAGDGSNQHPTQTLLDLYTIYE----------  143 (301)
T ss_pred             CCCCcCHHHHHHHHHH-h---CCEEEEECCc-hhHHHHHHhhCCCCEEeCCCCCCCCcHHHHHHHHHHHH----------
Confidence            3567888776543222 1   2344444332 22334445666788888743 33445566666655421          


Q ss_pred             cccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhCCCEEEEEecCCcc---HH--HHhhcCce---ecC
Q psy7896         328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLFGSRVIVTEIDPIN---AL--QASMEGYE---VTT  396 (718)
Q Consensus       328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~fGa~Viv~d~dp~~---al--~a~~~G~~---v~~  396 (718)
                                   ..| .++|++|+++|-|   ++.+..+..+..||++|.++-+....   ..  .+...|..   ..+
T Consensus       144 -------------~~g-~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d  209 (301)
T TIGR00670       144 -------------EFG-RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES  209 (301)
T ss_pred             -------------HhC-CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence                         123 4889999999995   99999999999999999998543321   11  11223543   368


Q ss_pred             HHHHhccCcEEEEcCC---------------CCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         397 MEEAAKEGGIFVTTTG---------------CKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       397 Leell~~aDiIi~atg---------------t~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++++++.+|+|.+..-               ...-|+.+.++..|+++++.-+.--+.|++.+-+..
T Consensus       210 ~~~a~~~aDvvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~V~d~  276 (301)
T TIGR00670       210 LEEVIDEADVLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPSVDDT  276 (301)
T ss_pred             HHHHhCCCCEEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHHHhCC
Confidence            9999999999987421               123478888999999999887765335776554443

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=96.57  E-value=0.0082  Score=63.52  Aligned_cols=86  Identities=12%  Similarity=0.087  Sum_probs=57.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------------cCHHHHhccCcEEEEcCCCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------------TTMEEAAKEGGIFVTTTGCKDI  416 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------------~~Leell~~aDiIi~atgt~~l  416 (718)
                      ++|+|||.|.+|..+|..|...|.+|+++++++.........|..+            .+..++ +.+|+|++++.+..+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~~~~   79 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKAYQL   79 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEecccccH
Confidence            3699999999999999999999999999988664322222234321            234454 889999998776543


Q ss_pred             cCHHHHh----cCCCCeEEEEcCCC
Q psy7896         417 IRGEHFL----QMRDDAIVCNIGHF  437 (718)
Q Consensus       417 I~~e~l~----~MK~gAiLIN~GRg  437 (718)
                        .+.++    .+.++..++....|
T Consensus        80 --~~~~~~l~~~l~~~~~iv~~~nG  102 (304)
T PRK06522         80 --PAALPSLAPLLGPDTPVLFLQNG  102 (304)
T ss_pred             --HHHHHHHhhhcCCCCEEEEecCC
Confidence              22333    34556666655443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=96.56  E-value=0.0063  Score=65.78  Aligned_cols=91  Identities=16%  Similarity=0.279  Sum_probs=67.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee-c-----CHHHHhc---cCcEEEEcCCCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV-T-----TMEEAAK---EGGIFVTTTGCKD  415 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v-~-----~Leell~---~aDiIi~atgt~~  415 (718)
                      ..|++|.|+|.|.||...++.++.+|+ +|++++.++.+...+...|... .     ++.++.+   ..|+++-++|...
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G~~~  247 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKLVNPQNDDLDHYKAEKGYFDVSFEVSGHPS  247 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEEecCCcccHHHHhccCCCCCEEEECCCCHH
Confidence            368999999999999999999999999 5888887776544444445432 1     2344433   2699999888643


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+ ...++.++++..++.+|..
T Consensus       248 ~~-~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        248 SI-NTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             HH-HHHHHHhhcCCEEEEEccC
Confidence            33 3578899999999999864

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=96.55  E-value=0.0077  Score=67.37  Aligned_cols=88  Identities=13%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh----------------cCcee---cCHHHHhccCcEEEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM----------------EGYEV---TTMEEAAKEGGIFVT  409 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~----------------~G~~v---~~Leell~~aDiIi~  409 (718)
                      ++|+|||.|.+|..+|..+. .|.+|+++|+++.+......                .+...   .+..++++++|+|++
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii   79 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVII   79 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEE
Confidence            36999999999999997776 59999999998865322111                11112   235678899999999


Q ss_pred             cCCCC-----CCcCH-------HHHhcCCCCeEEEEcCCC
Q psy7896         410 TTGCK-----DIIRG-------EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       410 atgt~-----~lI~~-------e~l~~MK~gAiLIN~GRg  437 (718)
                      +.++.     +..+-       +.+..+++|.++|+.+-.
T Consensus        80 ~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv  119 (388)
T PRK15057         80 ATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTV  119 (388)
T ss_pred             eCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeec
Confidence            86653     12221       223446889999988764

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=96.51  E-value=0.023  Score=59.82  Aligned_cols=61  Identities=18%  Similarity=0.142  Sum_probs=45.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC----EEEEEecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS----RVIVTEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa----~Viv~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atgt  413 (718)
                      +.++|+|||+|++|.++++.+..-|.    +++++++++.+      .+. ...+..++++++|+|++++..
T Consensus         2 ~~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~~~~~~D~Vilavkp   67 (260)
T PTZ00431          2 ENIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN------TPFVYLQSNEELAKTCDIIVLAVKP   67 (260)
T ss_pred             CCCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc------CCeEEeCChHHHHHhCCEEEEEeCH
Confidence            34689999999999999999987662    48888765432      122 234667788899999998554

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.50  E-value=0.0059  Score=67.04  Aligned_cols=91  Identities=23%  Similarity=0.372  Sum_probs=67.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh-cCceec-C-HH--------HHh--ccCcEEEEcCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM-EGYEVT-T-ME--------EAA--KEGGIFVTTTG  412 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~-~G~~v~-~-Le--------ell--~~aDiIi~atg  412 (718)
                      .+.+|.|+|.|.||...++.++.+|+ +|++.|.++.+...|.. .|.... + .+        ++-  ..+|+++.++|
T Consensus       168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G  247 (350)
T COG1063         168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG  247 (350)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC
Confidence            34499999999999999999999998 67788988877655543 454422 1 11        222  24899999999


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      +...+. +.++..+++..++.+|-..
T Consensus       248 ~~~~~~-~ai~~~r~gG~v~~vGv~~  272 (350)
T COG1063         248 SPPALD-QALEALRPGGTVVVVGVYG  272 (350)
T ss_pred             CHHHHH-HHHHHhcCCCEEEEEeccC
Confidence            654333 6788999999999998764

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=96.47  E-value=0.0093  Score=63.09  Aligned_cols=94  Identities=14%  Similarity=0.179  Sum_probs=61.9

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh----hcC-ceecCHHHH-hccCcEEEEcCCCC--CC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS----MEG-YEVTTMEEA-AKEGGIFVTTTGCK--DI  416 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~----~~G-~~v~~Leel-l~~aDiIi~atgt~--~l  416 (718)
                      ...+|+++|+|.|.+|+.++..+...|++|+++++++.+..+..    ..| ....++++. +.++|+|+.+|+..  .-
T Consensus       114 ~~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~  193 (270)
T TIGR00507       114 LRPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGN  193 (270)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCC
Confidence            45689999999999999999999999999999998875432211    112 223345543 35799999887641  11


Q ss_pred             cCH-H-HHhcCCCCeEEEEcCCCC
Q psy7896         417 IRG-E-HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       417 I~~-e-~l~~MK~gAiLIN~GRgd  438 (718)
                      +.. . ..+.++++.+++++...+
T Consensus       194 ~~~~~~~~~~l~~~~~v~D~~y~p  217 (270)
T TIGR00507       194 IDEPPVPAEKLKEGMVVYDMVYNP  217 (270)
T ss_pred             CCCCCCCHHHcCCCCEEEEeccCC
Confidence            110 0 134567777777776543

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.46  E-value=0.0037  Score=62.49  Aligned_cols=95  Identities=20%  Similarity=0.201  Sum_probs=57.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH------HH-----hhcC-------------ce-ecCHHHHhccC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL------QA-----SMEG-------------YE-VTTMEEAAKEG  404 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al------~a-----~~~G-------------~~-v~~Leell~~a  404 (718)
                      +|+|||.|.+|+.+|..+...|.+|+++|+++....      +.     ...|             .. ..+++++. .+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a   79 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA   79 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence            699999999999999999999999999999876321      00     0111             12 34677777 99


Q ss_pred             cEEEEcCCCCC----CcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         405 GIFVTTTGCKD----IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       405 DiIi~atgt~~----lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      |+|+-+....-    -+-++.-+.++++++|.....+   +.+..|..
T Consensus        80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs---l~i~~la~  124 (180)
T PF02737_consen   80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS---LSISELAA  124 (180)
T ss_dssp             SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS---S-HHHHHT
T ss_pred             heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC---CCHHHHHh
Confidence            99998743211    1222233456788877655442   44555554

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06823 ornithine cyclodeaminase; Validated

Probab=96.46  E-value=0.013  Score=63.90  Aligned_cols=100  Identities=15%  Similarity=0.174  Sum_probs=73.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHH--H--hhcCcee---cCHHHHhccCcEEEEcCCC-CCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQ--A--SMEGYEV---TTMEEAAKEGGIFVTTTGC-KDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~--a--~~~G~~v---~~Leell~~aDiIi~atgt-~~l  416 (718)
                      .-++++|||.|..++.-++.+.. +.. +|.++++++.++..  .  ...++.+   .+.+++++.||||+++|.. .-+
T Consensus       127 d~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~~P~  206 (315)
T PRK06823        127 HVSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSREPL  206 (315)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCCCce
Confidence            45899999999999998887653 333 79999998876432  1  1124443   4689999999999998654 446


Q ss_pred             cCHHHHhcCCCCeEEEEcCCC---CccccHHHHhcc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDKN  449 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~~  449 (718)
                      |+.+   .+|+|+.+.++|..   ..|+|.+.+...
T Consensus       207 ~~~~---~l~~G~hi~~iGs~~p~~~Eld~~~l~~a  239 (315)
T PRK06823        207 LQAE---DIQPGTHITAVGADSPGKQELDAELVARA  239 (315)
T ss_pred             eCHH---HcCCCcEEEecCCCCcccccCCHHHHhhC
Confidence            6654   56899999999964   367887766653

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=96.45  E-value=0.065  Score=58.95  Aligned_cols=161  Identities=17%  Similarity=0.080  Sum_probs=104.3

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .+.+||+.|...--.. +   -.+.|+. .+---.+..+++..+++|++...+...=.|+.++-|.+.+           
T Consensus        85 ~~kgEsl~DTarvls~-y---~D~iv~R-~~~~~~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e-----------  148 (334)
T PRK01713         85 IGHKESMKDTARVLGR-M---YDAIEYR-GFKQSIVNELAEYAGVPVFNGLTDEFHPTQMLADVLTMIE-----------  148 (334)
T ss_pred             CCCCcCHHHHHHHHHH-h---CCEEEEE-cCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence            3557898776543211 1   2233343 3333334445566778999887666666677777665421           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCccH---H-----H-HhhcCc--e-e
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPINA---L-----Q-ASMEGY--E-V  394 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~a---l-----~-a~~~G~--~-v  394 (718)
                                  ..|..+.|++|++||-+  ++.+..+..+..||++|.++-+.....   .     + +...|.  . .
T Consensus       149 ------------~~g~~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~  216 (334)
T PRK01713        149 ------------NCDKPLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVT  216 (334)
T ss_pred             ------------HcCCCcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEE
Confidence                        12335889999999987  578888999999999999975432211   0     1 112342  2 3


Q ss_pred             cCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896         395 TTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGHF  437 (718)
Q Consensus       395 ~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GRg  437 (718)
                      .+++++++++|+|.+..    +             ....|+.+.++.. |+++++.-+.-.
T Consensus       217 ~d~~~a~~~aDvVyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~lP~  277 (334)
T PRK01713        217 DDIDKAVKGVDFVHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCLPA  277 (334)
T ss_pred             cCHHHHhCCCCEEEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCCCC
Confidence            68999999999998731    1             1234888888886 799999988754

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.36  E-value=0.011  Score=68.77  Aligned_cols=37  Identities=35%  Similarity=0.428  Sum_probs=33.8

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  302 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp  302 (718)
                      ...|++|+|+|.|++|+.+|+.|+.+|+.|+++|..+
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3579999999999999999999999999999999654

>cd08230 glucose_DH Glucose dehydrogenase

Probab=96.34  E-value=0.0079  Score=65.24  Aligned_cols=91  Identities=23%  Similarity=0.188  Sum_probs=65.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEec---CCccHHHHhhcCceecC-----HHH--HhccCcEEEEcCCCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI---DPINALQASMEGYEVTT-----MEE--AAKEGGIFVTTTGCKD  415 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~---dp~~al~a~~~G~~v~~-----Lee--ll~~aDiIi~atgt~~  415 (718)
                      ..|++|.|+|.|.||..+++.++.+|++|+++++   ++.+...+...|.....     ..+  .....|+++.++|...
T Consensus       171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~~  250 (355)
T cd08230         171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYVNSSKTPVAEVKLVGEFDLIIEATGVPP  250 (355)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEecCCccchhhhhhcCCCCEEEECcCCHH
Confidence            3689999999999999999999999999999886   34333223334544321     111  1234799999988644


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+ .+.++.|+++..++.+|..
T Consensus       251 ~~-~~~~~~l~~~G~~v~~G~~  271 (355)
T cd08230         251 LA-FEALPALAPNGVVILFGVP  271 (355)
T ss_pred             HH-HHHHHHccCCcEEEEEecC
Confidence            33 4678999999999998864

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=96.32  E-value=0.0074  Score=63.92  Aligned_cols=66  Identities=9%  Similarity=0.094  Sum_probs=48.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhC--CCE-EEEEecCCccHHHHh-hcCc-eecCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF--GSR-VIVTEIDPINALQAS-MEGY-EVTTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f--Ga~-Viv~d~dp~~al~a~-~~G~-~v~~Leell~~aDiIi~atgt~  414 (718)
                      .+|||||+|+||+.+++.+...  +.+ +.++|+++.+..... ..|. .+.++++++.++|+|+.+++..
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~   72 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN   72 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH
Confidence            4799999999999999988765  566 446888775543322 2233 3457999999999999987653

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=96.32  E-value=0.0064  Score=64.97  Aligned_cols=89  Identities=17%  Similarity=0.188  Sum_probs=63.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCceecCHHH-HhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYEVTTMEE-AAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~v~~Lee-ll~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      ..|++|.|+|.|.||...++.++.+|++ |++++.++.+...+...  .+.+-++ .-...|+++-++|....++ ..++
T Consensus       143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~--~~i~~~~~~~~g~Dvvid~~G~~~~~~-~~~~  219 (308)
T TIGR01202       143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY--EVLDPEKDPRRDYRAIYDASGDPSLID-TLVR  219 (308)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc--cccChhhccCCCCCEEEECCCCHHHHH-HHHH
Confidence            3688999999999999999999999998 45566665443322221  2222222 1235799999998754443 5789


Q ss_pred             cCCCCeEEEEcCCC
Q psy7896         424 QMRDDAIVCNIGHF  437 (718)
Q Consensus       424 ~MK~gAiLIN~GRg  437 (718)
                      .|+++..++.+|..
T Consensus       220 ~l~~~G~iv~~G~~  233 (308)
T TIGR01202       220 RLAKGGEIVLAGFY  233 (308)
T ss_pred             hhhcCcEEEEEeec
Confidence            99999999999864

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.31  E-value=0.081  Score=58.28  Aligned_cols=161  Identities=14%  Similarity=0.051  Sum_probs=104.5

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+-|.+.--.. .   --++|+... --..+..+++.-+++|++...+...=.|++++-|.+.+           
T Consensus        84 ~~kgEsl~Dtarvls~-y---~D~Iv~R~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e-----------  147 (336)
T PRK03515         84 IGHKESIKDTARVLGR-M---YDGIQYRGY-GQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQE-----------  147 (336)
T ss_pred             CCCCCCHHHHHHHHHH-h---CcEEEEEeC-ChHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence            3457888876553211 1   223344322 22233445566678999887766666777777666532           


Q ss_pred             ccccccchhhhhhhc-ccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCccH---H-----H-HhhcCc--e-
Q psy7896         329 VKLTKLTEDQAKYLD-IMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPINA---L-----Q-ASMEGY--E-  393 (718)
Q Consensus       329 v~~~~~~~~~~~~~g-~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~a---l-----~-a~~~G~--~-  393 (718)
                                  ..| ..+.|++|++||-+  ++.+.++..+..||++|.++-+.....   .     + +...|.  . 
T Consensus       148 ------------~~g~~~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~  215 (336)
T PRK03515        148 ------------HLPGKAFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITL  215 (336)
T ss_pred             ------------HhCCCCcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEE
Confidence                        123 35899999999986  689999999999999999975432211   1     0 112342  2 


Q ss_pred             ecCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896         394 VTTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGHF  437 (718)
Q Consensus       394 v~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GRg  437 (718)
                      ..+++++++.+|+|.+..    +             ....|+.+.++.. |+++++.-+.-.
T Consensus       216 ~~d~~ea~~~aDvvytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcLP~  277 (336)
T PRK03515        216 TEDIAEGVKGADFIYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCLPA  277 (336)
T ss_pred             EcCHHHHhCCCCEEEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCCCC
Confidence            357999999999998841    1             1235888888885 899999888653

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=96.30  E-value=0.013  Score=67.00  Aligned_cols=112  Identities=28%  Similarity=0.326  Sum_probs=75.7

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh--hhhhhhhhhhhHHH---HHHHHHHhccccccc------
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYELDEEV---AALHLEHLGVKLTKL------  334 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~--v~AvaeGf~L~r~i---~~~~l~~lgv~~~~~------  334 (718)
                      ...|++|+|||.||.|+.+|..|...|+.|+++++.+.--  ...-..-|.+..++   +...+...|+++...      
T Consensus       120 ~~tg~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~  199 (457)
T COG0493         120 SRTGKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRD  199 (457)
T ss_pred             CCCCCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCc
Confidence            4578999999999999999999999999999998766532  11112234554433   444455556555311      


Q ss_pred             ---chhhh---------------------------------------hhhc-------ccccCcEEEEEecChhHHHHHH
Q psy7896         335 ---TEDQA---------------------------------------KYLD-------IMLAGKVAVVAGYGDVGKGCAQ  365 (718)
Q Consensus       335 ---~~~~~---------------------------------------~~~g-------~eL~GktVGIIG~G~IG~~vA~  365 (718)
                         .....                                       ...+       ....||+|.|||+|..+..++.
T Consensus       200 it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~~~  279 (457)
T COG0493         200 ITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG  279 (457)
T ss_pred             CCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHHHH
Confidence               00000                                       0001       1225699999999999999999


Q ss_pred             HHHhCCC-EEEEE
Q psy7896         366 SLRLFGS-RVIVT  377 (718)
Q Consensus       366 ~l~~fGa-~Viv~  377 (718)
                      .++.+|+ .|+..
T Consensus       280 t~~r~Ga~~v~~~  292 (457)
T COG0493         280 TALRLGAKSVTCF  292 (457)
T ss_pred             HHhhcCCeEEEEe
Confidence            9999999 46554

>KOG2380|consensus

Probab=96.30  E-value=0.0062  Score=66.33  Aligned_cols=100  Identities=17%  Similarity=0.277  Sum_probs=70.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-eecCHHHHh-ccCcEEEEcCCCC---CCcCHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EVTTMEEAA-KEGGIFVTTTGCK---DIIRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v~~Leell-~~aDiIi~atgt~---~lI~~e~  421 (718)
                      .-++|||||+|+.|+-.|..+...|..|+.+++......++ ..|. .+..+.+++ +++|+|..|+.--   .++..--
T Consensus        51 ~tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~-~yg~~~ft~lhdlcerhpDvvLlctsilsiekilatyp  129 (480)
T KOG2380|consen   51 ATLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAE-KYGSAKFTLLHDLCERHPDVVLLCTSILSIEKILATYP  129 (480)
T ss_pred             cceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHH-HhcccccccHHHHHhcCCCEEEEEehhhhHHHHHHhcC
Confidence            35789999999999999999999999999998765443322 2333 345677776 5799999887532   2333334


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++++|.|++++..-... |...+++.+
T Consensus       130 fqrlrrgtlfvdvlSvK-efek~lfek  155 (480)
T KOG2380|consen  130 FQRLRRGTLFVDVLSVK-EFEKELFEK  155 (480)
T ss_pred             chhhccceeEeeeeecc-hhHHHHHHH
Confidence            67789999999876543 444444444

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.28  E-value=0.015  Score=66.71  Aligned_cols=71  Identities=15%  Similarity=0.150  Sum_probs=49.7

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCceecCHHHH--hccCcEEEEcCCC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEVTTMEEA--AKEGGIFVTTTGC  413 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v~~Leel--l~~aDiIi~atgt  413 (718)
                      +..+.+++++|+|.|.+|++++..+...|++|+++++++.+..+.. ..+....+++++  +.++|+|+.++..
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~  400 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPP  400 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCC
Confidence            3457899999999999999999999999999999988765432211 111122333332  4577888877654

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=96.28  E-value=0.023  Score=61.56  Aligned_cols=100  Identities=17%  Similarity=0.141  Sum_probs=71.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHH--Hh---hcCce---ecCHHHHhccCcEEEEcCCC-CC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQ--AS---MEGYE---VTTMEEAAKEGGIFVTTTGC-KD  415 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~--a~---~~G~~---v~~Leell~~aDiIi~atgt-~~  415 (718)
                      .-++++|||.|..|+.-++.+.. +.. +|.++++++.+...  +.   ..|..   +.+.++++++||||+++|.. ..
T Consensus       116 da~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~~P  195 (301)
T PRK06407        116 NVENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSDTP  195 (301)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCc
Confidence            46899999999999988877754 454 69999988875322  11   12432   34799999999999998654 44


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhcc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDKN  449 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~~  449 (718)
                      +|+.+   .+|+|+-+.-+|..   ..|+|.+-+...
T Consensus       196 ~~~~~---~l~pg~hV~aiGs~~p~~~El~~~~l~~a  229 (301)
T PRK06407        196 IFNRK---YLGDEYHVNLAGSNYPNRREAEHSVLNDA  229 (301)
T ss_pred             EecHH---HcCCCceEEecCCCCCCcccCCHHHHHhC
Confidence            66654   56899888888864   367887666543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.28  E-value=0.011  Score=67.97  Aligned_cols=67  Identities=27%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecC---HHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTT---MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~---Leell~~aDiIi~atg  412 (718)
                      +.|++|.|+|+|.+|.++++.|+..|++|+++|..+.........|..+..   ..+.++++|+|+..+|
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG   79 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG   79 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence            478999999999999999999999999999999665432222234655432   3455778999998765

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=96.27  E-value=0.0064  Score=62.02  Aligned_cols=92  Identities=16%  Similarity=0.299  Sum_probs=62.9

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccH------------------------HHHhhcCcee-----
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA------------------------LQASMEGYEV-----  394 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~a------------------------l~a~~~G~~v-----  394 (718)
                      .|..++|+|+|.|.+|..+|..|...|. +++++|.|....                        +........+     
T Consensus        18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~~   97 (200)
T TIGR02354        18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYDE   97 (200)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEeee
Confidence            4788999999999999999999999999 699998872110                        0000011111     


Q ss_pred             ----cCHHHHhccCcEEEEcCCC---CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         395 ----TTMEEAAKEGGIFVTTTGC---KDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       395 ----~~Leell~~aDiIi~atgt---~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                          .+++++++.+|+|+.++.+   +.++..+....|+...++...|-
T Consensus        98 ~i~~~~~~~~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~  146 (200)
T TIGR02354        98 KITEENIDKFFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAASGL  146 (200)
T ss_pred             eCCHhHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEEecc
Confidence                1245577889999988654   44566666677777777775443

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=96.27  E-value=0.11  Score=57.28  Aligned_cols=160  Identities=16%  Similarity=0.057  Sum_probs=104.7

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+.|.+.--.    .--.+.|+.. +-.-.+..+++.-+++|++...+...=.|+.++-|.+-+           
T Consensus        85 ~~kgEsl~Dt~rvls----~y~D~iviR~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e-----------  148 (331)
T PRK02102         85 LGKKESIEDTARVLG----RMYDGIEYRG-FKQEIVEELAKYSGVPVWNGLTDEWHPTQMLADFMTMKE-----------  148 (331)
T ss_pred             CCCCcCHHHHHHHHh----hcCCEEEEEC-CchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence            345789887654321    1123444443 323334445566778998877666666777777665422           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCccH---H------HHhhcCce---e
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPINA---L------QASMEGYE---V  394 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~a---l------~a~~~G~~---v  394 (718)
                                  ..| .+.|++|++||-+  ++.+..+..+..||++|.++-+.....   .      .+...|..   .
T Consensus       149 ------------~~g-~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~  215 (331)
T PRK02102        149 ------------HFG-PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITIT  215 (331)
T ss_pred             ------------HhC-CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEE
Confidence                        112 4789999999997  789999999999999999975432211   0      01123433   3


Q ss_pred             cCHHHHhccCcEEEEcC----C------------CCCCcCHHHHh-cCCCCeEEEEcCCC
Q psy7896         395 TTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFL-QMRDDAIVCNIGHF  437 (718)
Q Consensus       395 ~~Leell~~aDiIi~at----g------------t~~lI~~e~l~-~MK~gAiLIN~GRg  437 (718)
                      .+++++++.+|+|.+-.    +            ...-|+++.++ .+|+++++.-+.-.
T Consensus       216 ~d~~ea~~~aDvvyt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~lP~  275 (331)
T PRK02102        216 EDPEEAVKGADVIYTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCLPA  275 (331)
T ss_pred             cCHHHHhCCCCEEEEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCCCC
Confidence            57999999999998741    1            13358888888 58999999888654

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=96.26  E-value=0.011  Score=63.99  Aligned_cols=87  Identities=17%  Similarity=0.155  Sum_probs=58.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-----------------cCHHHHhccCcEEEEcC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-----------------TTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-----------------~~Leell~~aDiIi~at  411 (718)
                      ++|+|||.|.||..+|..+...|.+|+++++++.. ......|..+                 .+-.+.++.+|+|++++
T Consensus         3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~v   81 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIG-DELRAHGLTLTDYRGRDVRVPPSAIAFSTDPAALATADLVLVTV   81 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHH-HHHHhcCceeecCCCcceecccceeEeccChhhccCCCEEEEEe
Confidence            57999999999999999999999999999876532 1112233221                 12225678899999986


Q ss_pred             CCCCCcC--HHHHhcCCCCeEEEEcCC
Q psy7896         412 GCKDIIR--GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       412 gt~~lI~--~e~l~~MK~gAiLIN~GR  436 (718)
                      .+.....  .+....++++.+++.+.-
T Consensus        82 k~~~~~~~~~~l~~~~~~~~iii~~~n  108 (341)
T PRK08229         82 KSAATADAAAALAGHARPGAVVVSFQN  108 (341)
T ss_pred             cCcchHHHHHHHHhhCCCCCEEEEeCC
Confidence            6544311  222345678888877643

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.26  E-value=0.11  Score=57.73  Aligned_cols=176  Identities=17%  Similarity=0.142  Sum_probs=107.4

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCC---CChhHHHHHHh------------cC
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGD---VGKGCAQSLRL------------FG  292 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~---vG~~~A~aLra------------~G  292 (718)
                      .|+--++.++.+.      ...|.+||+-|.+.-...    =-.+.|+....   .+-.....+.+            -.
T Consensus        66 ~LGg~~i~l~~~~------s~~~kgEsl~Dtarvls~----y~D~Iv~R~~~~~~~~~~~l~~~a~~~~~~~~~~~~~s~  135 (357)
T TIGR03316        66 LLGLHAQDLDEGK------SQIGHGETVRETAEMISF----FADGIGIRDDMYIGVGNAYMREVAKYVQEGYKDGVLEQR  135 (357)
T ss_pred             HcCCcEEEeCCcc------ccCCCCCCHHHHHHHHHH----hCcEEEEeCCCccccccHHHHHHHHhhhhccccccccCC
Confidence            3455566665432      124567999876653222    12344455322   12232222333            36


Q ss_pred             CeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc--cccCcEEEEEecC--------hhHHH
Q psy7896         293 SRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI--MLAGKVAVVAGYG--------DVGKG  362 (718)
Q Consensus       293 v~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~--eL~GktVGIIG~G--------~IG~~  362 (718)
                      ++|++...+...=.|++++-|.+.+                       ..|.  .++|++|+|+|.|        ++.+.
T Consensus       136 vPVINa~~~~~HPtQaLaDl~Ti~e-----------------------~~G~~~~l~g~kvai~~~~d~~~gr~~~v~~S  192 (357)
T TIGR03316       136 PPLVNLQCDIDHPTQAMADIMTLQE-----------------------KFGGIENLKGKKFAMTWAYSPSYGKPLSVPQG  192 (357)
T ss_pred             CCEEECCCCCCCchHHHHHHHHHHH-----------------------HhCCccccCCCEEEEEeccccccCccchHHHH
Confidence            8898877666666777777665532                       1232  3789999999853        45577


Q ss_pred             HHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCce---ecCHHHHhccCcEEEEcC----C--------------
Q psy7896         363 CAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGYE---VTTMEEAAKEGGIFVTTT----G--------------  412 (718)
Q Consensus       363 vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~~---v~~Leell~~aDiIi~at----g--------------  412 (718)
                      ++..+..||++|.++-+....   .. +     +...|..   ..+++++++.+|+|.+..    +              
T Consensus       193 l~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~  272 (357)
T TIGR03316       193 IIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDADIVYPKSWAPIAAMEKRTELYTGSDT  272 (357)
T ss_pred             HHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEECCeeccccccccchhcccchh
Confidence            788889999999997543221   11 1     1123433   368999999999999752    1              


Q ss_pred             -----------------CCCCcCHHHHhcCC-CCeEEEEcCC
Q psy7896         413 -----------------CKDIIRGEHFLQMR-DDAIVCNIGH  436 (718)
Q Consensus       413 -----------------t~~lI~~e~l~~MK-~gAiLIN~GR  436 (718)
                                       ....|+.+.++.+| +++++.-+.-
T Consensus       273 ~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHcLP  314 (357)
T TIGR03316       273 EGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHCLP  314 (357)
T ss_pred             hhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECCCC
Confidence                             02238888888998 8899888864

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=96.26  E-value=0.017  Score=63.07  Aligned_cols=78  Identities=24%  Similarity=0.304  Sum_probs=59.0

Q ss_pred             HHHHHHHHHhCCCEEEEEecCCccH-----HHHhhcCceec-CHHHHhccCcEEEEcCCCCC----CcCHHHHhcCCCCe
Q psy7896         360 GKGCAQSLRLFGSRVIVTEIDPINA-----LQASMEGYEVT-TMEEAAKEGGIFVTTTGCKD----IIRGEHFLQMRDDA  429 (718)
Q Consensus       360 G~~vA~~l~~fGa~Viv~d~dp~~a-----l~a~~~G~~v~-~Leell~~aDiIi~atgt~~----lI~~e~l~~MK~gA  429 (718)
                      |+.+|+.|..-|..|+++|+++...     ......|.... +..++++++|+|+++..+..    ++ ...++.+++|+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga  110 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA  110 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence            8999999999999999998876421     11234566554 58899999999999855432    33 34678899999


Q ss_pred             EEEEcCCCC
Q psy7896         430 IVCNIGHFD  438 (718)
Q Consensus       430 iLIN~GRgd  438 (718)
                      ++||++-.+
T Consensus       111 IVID~STIs  119 (341)
T TIGR01724       111 VICNTCTVS  119 (341)
T ss_pred             EEEECCCCC
Confidence            999998754

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.25  E-value=0.01  Score=54.02  Aligned_cols=63  Identities=32%  Similarity=0.460  Sum_probs=44.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--------CHHHH-hccCcEEEEcCCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--------TMEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--------~Leel-l~~aDiIi~atgt  413 (718)
                      |.|+|+|++|+.+++.|+..+.+|+++|.+|.....+...|+.+.        .+.++ +.++|.++.++++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~   72 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDD   72 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSS
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCC
Confidence            579999999999999999977799999999976655555665432        12232 4566766666543

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.23  E-value=0.11  Score=57.21  Aligned_cols=162  Identities=13%  Similarity=0.057  Sum_probs=104.8

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|.+||+-|.+.--.. +   -.++|+... ---.+-..++.-+++|++...+...=.|+.++-|.+.+           
T Consensus        84 ~~kgEsl~Dtarvls~-y---~D~iviR~~-~~~~~~~~a~~~~vPVINa~~~~~HPtQaLaDl~Ti~e-----------  147 (334)
T PRK12562         84 IGHKESIKDTARVLGR-M---YDGIQYRGH-GQEVVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQE-----------  147 (334)
T ss_pred             CCCCcCHHHHHHHHHH-h---CCEEEEECC-chHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence            4567998876653211 1   223344322 22233344556678999877666666777777665532           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCce---e
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGYE---V  394 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~~---v  394 (718)
                                 .+.|..+.|++|++||-+  ++.+..+..+..||++|.++-+....   .. +     +...|..   .
T Consensus       148 -----------~~g~~~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~  216 (334)
T PRK12562        148 -----------HLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLT  216 (334)
T ss_pred             -----------HhCCCCcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEE
Confidence                       111235889999999986  78999999999999999987543221   11 0     1112422   3


Q ss_pred             cCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896         395 TTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGHF  437 (718)
Q Consensus       395 ~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GRg  437 (718)
                      .+++++++.+|+|.+..    +             ...-|+.+.++.. |+++++.-+.-.
T Consensus       217 ~d~~~a~~~aDvvyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcLP~  277 (334)
T PRK12562        217 EDIAAGVKGADFIYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCLPA  277 (334)
T ss_pred             cCHHHHhCCCCEEEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCCCC
Confidence            67999999999999842    1             1234888888885 899999988754

>PLN02342 ornithine carbamoyltransferase

Probab=96.23  E-value=0.12  Score=57.15  Aligned_cols=170  Identities=15%  Similarity=0.063  Sum_probs=110.1

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .+-+||+.|.+.--.. .   -.+.|+....-+ .+...++.-+++|++...+...=.|++++-|.+.+           
T Consensus       124 ~~kGESl~DTarvLs~-y---~D~IviR~~~~~-~~~~la~~~~vPVINA~~~~~HPtQaLaDl~Ti~e-----------  187 (348)
T PLN02342        124 LGKREETRDIARVLSR-Y---NDIIMARVFAHQ-DVLDLAEYSSVPVINGLTDYNHPCQIMADALTIIE-----------  187 (348)
T ss_pred             CCCCcCHHHHHHHHHH-h---CCEEEEeCCChH-HHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence            3457898876553211 1   234444433222 23334456678999887666666677777665432           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccH---H--HHhhcC---ce-ecCHH
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINA---L--QASMEG---YE-VTTME  398 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~a---l--~a~~~G---~~-v~~Le  398 (718)
                                  ..| .+.|++|++||-+ ++.+..+..+..||++|.++-+.....   .  .+...|   +. ..+++
T Consensus       188 ------------~~G-~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~  254 (348)
T PLN02342        188 ------------HIG-RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPA  254 (348)
T ss_pred             ------------HhC-CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHH
Confidence                        123 4889999999984 488888888999999999975433211   1  111122   33 36799


Q ss_pred             HHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHh
Q psy7896         399 EAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLD  447 (718)
Q Consensus       399 ell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~  447 (718)
                      ++++.+|+|.+..    +            ....|+.+.++.+|+++++.-++-.  +.|++.+-+.
T Consensus       255 eav~~aDVvy~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpLP~~rg~EIs~eV~d  321 (348)
T PLN02342        255 EAVKGADVVYTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCLPAERGVEVTDGVME  321 (348)
T ss_pred             HHhCCCCEEEECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCCCcCCCceecHHHhC
Confidence            9999999999752    1            1246999999999999999988764  3477755444

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=96.21  E-value=0.1  Score=57.51  Aligned_cols=186  Identities=16%  Similarity=0.060  Sum_probs=116.3

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+--++..+.+..      ..+.+||+.|.+.-... .   --++|+.. +-...+-.+++..+++|++...+...=.|+
T Consensus        67 LGg~~i~l~~~~s------s~~kgEsl~Dtarvls~-y---~D~iviR~-~~~~~~~~~a~~~~vPVINa~~~~~HPtQa  135 (338)
T PRK02255         67 LGGHAQYLAPGQI------QLGGHESLEDTARVLSR-L---VDIIMARV-DRHQTVVELAKYATVPVINGMSDYNHPTQE  135 (338)
T ss_pred             cCCeEEEeCcccc------cCCCCcCHHHHHHHHHH-h---CcEEEEec-CChHHHHHHHHhCCCCEEECCCCCCChHHH
Confidence            4445555554322      22457998876543211 1   12333332 222234445566678999877666666677


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhh-cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc---
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYL-DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN---  383 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~-g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~---  383 (718)
                      +++-|.+.+                      .+. |..+.|++|++||- .++....+..+..||++|.++-+....   
T Consensus       136 LaDl~Ti~e----------------------~~g~g~~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~  193 (338)
T PRK02255        136 LGDLFTMIE----------------------HLPEGKKLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPE  193 (338)
T ss_pred             HHHHHHHHH----------------------HhCCCCCCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCH
Confidence            777665422                      111 23589999999998 578888899999999999998543221   


Q ss_pred             HH-H-----HhhcC--ce-ecCHHHHhccCcEEEEcC-----C-------------CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         384 AL-Q-----ASMEG--YE-VTTMEEAAKEGGIFVTTT-----G-------------CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       384 al-~-----a~~~G--~~-v~~Leell~~aDiIi~at-----g-------------t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .. +     +...|  +. ..+++++++.+|||.+..     +             ....|+.+.++.+|+++++.-+.-
T Consensus       194 ~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP  273 (338)
T PRK02255        194 EHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLP  273 (338)
T ss_pred             HHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCC
Confidence            11 1     11224  22 368999999999998821     1             124689999999999999998875


Q ss_pred             --CCccccHHHHh
Q psy7896         437 --FDCEIQVSWLD  447 (718)
Q Consensus       437 --gd~Eid~~aL~  447 (718)
                        -+.|++.+-+.
T Consensus       274 ~~Rg~Eis~~V~d  286 (338)
T PRK02255        274 ATRGEEVTDEVMD  286 (338)
T ss_pred             CcCCceecHHHhC
Confidence              33577755443

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.20  E-value=0.025  Score=63.48  Aligned_cols=35  Identities=23%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~  190 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAAS  190 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            46899999999999999999999999999998754

>PRK07589 ornithine cyclodeaminase; Validated

Probab=96.19  E-value=0.027  Score=62.22  Aligned_cols=99  Identities=19%  Similarity=0.307  Sum_probs=70.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHH-hCCC-EEEEEecCCccHHH--Hh--hcCce---ecCHHHHhccCcEEEEcCCCC---
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLR-LFGS-RVIVTEIDPINALQ--AS--MEGYE---VTTMEEAAKEGGIFVTTTGCK---  414 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~-~fGa-~Viv~d~dp~~al~--a~--~~G~~---v~~Leell~~aDiIi~atgt~---  414 (718)
                      .-++++|||.|..++.-++.+. -+.. +|.++++++.+...  ..  ..++.   +.+.++++++||||+++|...   
T Consensus       128 da~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~~~  207 (346)
T PRK07589        128 DSRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKTNA  207 (346)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCCCC
Confidence            3589999999999988877554 3455 69999998875321  11  12433   357999999999999987543   


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      -++..+   .+|+|+.+.-+|..   ..|+|.+-+..
T Consensus       208 Pvl~~~---~lkpG~hV~aIGs~~p~~~Eld~~~l~~  241 (346)
T PRK07589        208 TILTDD---MVEPGMHINAVGGDCPGKTELHPDILRR  241 (346)
T ss_pred             ceecHH---HcCCCcEEEecCCCCCCcccCCHHHHhc
Confidence            356654   56999999988854   35787666654

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.17  E-value=0.057  Score=53.09  Aligned_cols=102  Identities=21%  Similarity=0.167  Sum_probs=72.3

Q ss_pred             cCcEEEEEe--cChhHHHHHHHHHhCCCEEEEEecCCc--cH----H-----HHhhcCc--e-ecCHHHHhccCcEEEEc
Q psy7896         347 AGKVAVVAG--YGDVGKGCAQSLRLFGSRVIVTEIDPI--NA----L-----QASMEGY--E-VTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       347 ~GktVGIIG--~G~IG~~vA~~l~~fGa~Viv~d~dp~--~a----l-----~a~~~G~--~-v~~Leell~~aDiIi~a  410 (718)
                      .|++|++||  .+++...++..+..||+++.++-+...  ..    +     .+...|.  . ..+++++++++|||.+.
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~   80 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD   80 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred             CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence            489999999  379999999999999999888754331  11    0     0111232  2 35899999999999874


Q ss_pred             CCC---------------CCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896         411 TGC---------------KDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK  448 (718)
Q Consensus       411 tgt---------------~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~  448 (718)
                      .-.               ...++.+.++.+|+++++.-+.-  -+.|++.+-+..
T Consensus        81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~eV~~~  135 (158)
T PF00185_consen   81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDEVDDS  135 (158)
T ss_dssp             SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHHHHTS
T ss_pred             CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHhHhCC
Confidence            211               14699999999999999999986  346777654443

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=96.16  E-value=0.027  Score=61.83  Aligned_cols=100  Identities=19%  Similarity=0.217  Sum_probs=74.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHHH----hhcCc----eecCHHHHhccCcEEEEcCCC-CC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQA----SMEGY----EVTTMEEAAKEGGIFVTTTGC-KD  415 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a----~~~G~----~v~~Leell~~aDiIi~atgt-~~  415 (718)
                      .-++++|||.|..++.-++.++. ++. +|.+++++|......    ...+.    .+.+.+++++.||||+++|.+ .-
T Consensus       129 da~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~P  208 (330)
T COG2423         129 DASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTEP  208 (330)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCCC
Confidence            35789999999999999998864 566 799999988653221    12222    345789999999999998654 44


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC---CCccccHHHHhcc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH---FDCEIQVSWLDKN  449 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR---gd~Eid~~aL~~~  449 (718)
                      ++..   +.+|+|+.+..+|-   +..|+|.+.|...
T Consensus       209 il~~---~~l~~G~hI~aiGad~p~k~Eld~e~l~ra  242 (330)
T COG2423         209 VLKA---EWLKPGTHINAIGADAPGKRELDPEVLARA  242 (330)
T ss_pred             eecH---hhcCCCcEEEecCCCCcccccCCHHHHHhc
Confidence            5655   45689999999995   3468888877764

>PRK08291 ectoine utilization protein EutC; Validated

Probab=96.13  E-value=0.03  Score=61.10  Aligned_cols=99  Identities=24%  Similarity=0.214  Sum_probs=69.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CC-CEEEEEecCCccHHHHh-----hcCce---ecCHHHHhccCcEEEEcCCCC-C
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FG-SRVIVTEIDPINALQAS-----MEGYE---VTTMEEAAKEGGIFVTTTGCK-D  415 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fG-a~Viv~d~dp~~al~a~-----~~G~~---v~~Leell~~aDiIi~atgt~-~  415 (718)
                      ..++++|||.|.+|+..+..+.. .+ .+|.++++++.+.....     ..|..   +.+++++++++|+|+++|... .
T Consensus       131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~p  210 (330)
T PRK08291        131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEEP  210 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCCc
Confidence            46899999999999998887764 56 47999998876532211     12444   357889999999999987653 4


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      +|..+   .+|+|+.+..+|..   ..|+|.+-+..
T Consensus       211 ~i~~~---~l~~g~~v~~vg~d~~~~rEld~~~l~~  243 (330)
T PRK08291        211 ILKAE---WLHPGLHVTAMGSDAEHKNEIAPAVFAA  243 (330)
T ss_pred             EecHH---HcCCCceEEeeCCCCCCcccCCHHHHhh
Confidence            56553   36888877666642   24677665554

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=96.12  E-value=0.012  Score=61.09  Aligned_cols=89  Identities=20%  Similarity=0.212  Sum_probs=61.2

Q ss_pred             cEEEEEecChhHHHHHHHHHh--CCCE-EEEEecCCccHHHHh--hcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRL--FGSR-VIVTEIDPINALQAS--MEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~--fGa~-Viv~d~dp~~al~a~--~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      .+|||||||.||+.+.+.++.  ...+ |.+||+++.++.+..  ..+..+.+++|++++.|+++.+.+... +..-..+
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~~A-v~e~~~~   79 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASPEA-VREYVPK   79 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCHHH-HHHHhHH
Confidence            379999999999999999974  3454 778999887654332  223345789999999999998876532 2222233


Q ss_pred             cCCC--CeEEEEcCCCC
Q psy7896         424 QMRD--DAIVCNIGHFD  438 (718)
Q Consensus       424 ~MK~--gAiLIN~GRgd  438 (718)
                      .+|.  +.+++.+|-..
T Consensus        80 ~L~~g~d~iV~SVGALa   96 (255)
T COG1712          80 ILKAGIDVIVMSVGALA   96 (255)
T ss_pred             HHhcCCCEEEEechhcc
Confidence            4444  46677776654

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.10  E-value=0.031  Score=59.94  Aligned_cols=106  Identities=14%  Similarity=0.180  Sum_probs=80.9

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhC----CC-------EEEEEecCCc--------cHHH--HhhcCc--eecCHH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLF----GS-------RVIVTEIDPI--------NALQ--ASMEGY--EVTTME  398 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~f----Ga-------~Viv~d~dp~--------~al~--a~~~G~--~v~~Le  398 (718)
                      .|..|...+|.|+|.|.-|..+|+.+...    |+       ++.++|++-.        ...+  -....-  ...+|.
T Consensus        19 ~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~   98 (279)
T cd05312          19 TGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLL   98 (279)
T ss_pred             hCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHH
Confidence            46788899999999999999999999776    87       7888776421        1111  011111  345899


Q ss_pred             HHhc--cCcEEEEcCCCCCCcCHHHHhcCC---CCeEEEEcCCCCc--cccHHHHh
Q psy7896         399 EAAK--EGGIFVTTTGCKDIIRGEHFLQMR---DDAIVCNIGHFDC--EIQVSWLD  447 (718)
Q Consensus       399 ell~--~aDiIi~atgt~~lI~~e~l~~MK---~gAiLIN~GRgd~--Eid~~aL~  447 (718)
                      |+++  ..|+++-+++..++|+++.++.|.   +..++.-.+.-..  |+..+...
T Consensus        99 e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~  154 (279)
T cd05312          99 EVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAY  154 (279)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHH
Confidence            9999  889999988877999999999998   8899998888654  77765443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=96.10  E-value=0.02  Score=62.75  Aligned_cols=204  Identities=19%  Similarity=0.219  Sum_probs=112.2

Q ss_pred             cceEEEecCCcccccccccccchhhHHH------------HHhh--hcccccCCcEEEEEecCCCChhHHHHHHhcCCeE
Q psy7896         230 GVPAINVNDSVTKSKFDNLYGCRESLVD------------GLKR--ATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV  295 (718)
Q Consensus       230 ~~Pv~~v~ds~~K~~fd~~~G~~es~~~------------~i~r--~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~V  295 (718)
                      .++|.|+..+...+.-+...|.-=++.+            .|.+  ..+..+.||++.|+|+|.+|..+|..|+.+|.+|
T Consensus        89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~afgm~v  168 (324)
T COG0111          89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKV  168 (324)
T ss_pred             CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhCCCeE
Confidence            7889999888888777766651111111            1111  2344678999999999999999999999999999


Q ss_pred             EEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEE
Q psy7896         296 IVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI  375 (718)
Q Consensus       296 tV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi  375 (718)
                      ..+|.-..+.......++....                                             +-..|+.  ++|+
T Consensus       169 ~~~d~~~~~~~~~~~~~~~~~~---------------------------------------------Ld~lL~~--sDiv  201 (324)
T COG0111         169 IGYDPYSPRERAGVDGVVGVDS---------------------------------------------LDELLAE--ADIL  201 (324)
T ss_pred             EEECCCCchhhhccccceeccc---------------------------------------------HHHHHhh--CCEE
Confidence            9998844443222111111100                                             0022221  3344


Q ss_pred             EEecCCccHHHHhhcCceecCHHHH--hccCcEEEEcCCCCCCcCHHHH-hcCCCCeEE-EEcCCCCccccHHHHhcccc
Q psy7896         376 VTEIDPINALQASMEGYEVTTMEEA--AKEGGIFVTTTGCKDIIRGEHF-LQMRDDAIV-CNIGHFDCEIQVSWLDKNAV  451 (718)
Q Consensus       376 v~d~dp~~al~a~~~G~~v~~Leel--l~~aDiIi~atgt~~lI~~e~l-~~MK~gAiL-IN~GRgd~Eid~~aL~~~~l  451 (718)
                      ... -|...     +-....+-+++  ++..-++|.+ +--.+++.+.| +.++.|.+- .-.=-++.|...+.      
T Consensus       202 ~lh-~PlT~-----eT~g~i~~~~~a~MK~gailIN~-aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~------  268 (324)
T COG0111         202 TLH-LPLTP-----ETRGLINAEELAKMKPGAILINA-ARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPAD------  268 (324)
T ss_pred             EEc-CCCCc-----chhcccCHHHHhhCCCCeEEEEC-CCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCC------
Confidence            432 12211     01112233333  4444455544 44457787764 677776543 11112222322211      


Q ss_pred             ceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCc
Q psy7896         452 EKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAP  494 (718)
Q Consensus       452 ~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a  494 (718)
                      ..+--.|+|..|||.+..+.|++.+. ...+..|+..+..+.+
T Consensus       269 ~pL~~~pnV~~TPHia~~T~ea~~~~-~~~~~~~i~~~l~g~~  310 (324)
T COG0111         269 SPLWDLPNVILTPHIGGSTDEAQERV-AEIVAENIVRYLAGGP  310 (324)
T ss_pred             ChhhcCCCeEECCcccccCHHHHHHH-HHHHHHHHHHHHcCCC
Confidence            11223588989999999999887664 3334455555555544

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.10  E-value=0.015  Score=66.11  Aligned_cols=67  Identities=13%  Similarity=0.123  Sum_probs=49.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-----HHHhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-----LQASMEGYEVT---TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-----l~a~~~G~~v~---~Leell~~aDiIi~atg  412 (718)
                      +.+++|+|+|+|..|+++|+.|+..|++|+++|.++...     .+....|+.+.   ...+.+.++|+|+..++
T Consensus        12 ~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Spg   86 (458)
T PRK01710         12 IKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTPS   86 (458)
T ss_pred             hcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECCC
Confidence            568999999999999999999999999999999765311     11223465542   22455678999987643

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.09  E-value=0.12  Score=56.36  Aligned_cols=184  Identities=16%  Similarity=0.165  Sum_probs=116.2

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhc--CCeEEEe-ecCchhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLF--GSRVIVT-EIDPINA  305 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~--Gv~VtV~-D~dp~r~  305 (718)
                      |+--++.++.+..      ..|-+||+.|...--..   -+-.+.|+.. + .-+.+..+.+.  .++|++. +.+...=
T Consensus        70 LGg~~~~~~~~~s------~~~kgEsl~Dtarvls~---y~~D~iv~R~-~-~~~~~~~~a~~~~~vPvINag~g~~~HP  138 (310)
T PRK13814         70 LGAMVLNPNLKIS------AISKGETLFDTIKTLEA---MGVYFFIVRH-S-ENETPEQIAKQLSSGVVINAGDGNHQHP  138 (310)
T ss_pred             hCCeEEECCCccc------cCCCCCCHHHHHHHHHH---hCCCEEEEeC-C-chhHHHHHHHhCCCCCeEECCcCCCCCc
Confidence            4445666654322      24567998876543211   1212333432 2 23334344333  5888888 7777777


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEec---ChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         306 LQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGY---GDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       306 v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~---G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|+.++-|.+.+                       ..| .+.|++|++||-   +++....+..+..||+ +|.++-+..
T Consensus       139 tQaLaDl~Ti~e-----------------------~~g-~l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~  194 (310)
T PRK13814        139 SQALIDLMTIKQ-----------------------HKP-HWNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSS  194 (310)
T ss_pred             hHHHHHHHHHHH-----------------------HhC-CcCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcc
Confidence            778777766532                       112 378999999998   5999999999999999 899875433


Q ss_pred             ccHHHHhhcCce-ecCHHHHhccCcEEEEcC-------C--------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccH
Q psy7896         382 INALQASMEGYE-VTTMEEAAKEGGIFVTTT-------G--------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQV  443 (718)
Q Consensus       382 ~~al~a~~~G~~-v~~Leell~~aDiIi~at-------g--------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~  443 (718)
                      ....+.....+. ..+++++++.+|||.+..       .        ....|+.+.++.+|+++++.-+.-.  +.|++.
T Consensus       195 ~~p~~~~~~~~~~~~d~~ea~~~aDvvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcLP~~Rg~Ei~~  274 (310)
T PRK13814        195 LLPDKVGNDSIKKFTELKPSLLNSDVIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPGPVNREVEINS  274 (310)
T ss_pred             cCcCccccceEEEEcCHHHHhCCCCEEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECCCCCCCCCeeCH
Confidence            211111111233 357999999999999731       0        1246899999999999999988753  347765


Q ss_pred             HHHh
Q psy7896         444 SWLD  447 (718)
Q Consensus       444 ~aL~  447 (718)
                      +-+.
T Consensus       275 ~V~d  278 (310)
T PRK13814        275 DVAD  278 (310)
T ss_pred             HHhC
Confidence            5443

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=96.07  E-value=0.019  Score=60.92  Aligned_cols=87  Identities=17%  Similarity=0.143  Sum_probs=56.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--------------ecCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--------------VTTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--------------v~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||.|.+|..+|..|..-|.+|+++++ +.........|..              ..+.+++.+.+|++++++.+.
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~~   79 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKAY   79 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEeccc
Confidence            3799999999999999999999999999987 4322111122322              124556668899999987654


Q ss_pred             CCcC--HHHHhcCCCCeEEEEcCC
Q psy7896         415 DIIR--GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ~lI~--~e~l~~MK~gAiLIN~GR  436 (718)
                      .+-.  .+.-...+++.+++.+.-
T Consensus        80 ~~~~~~~~l~~~~~~~~~ii~~~n  103 (305)
T PRK12921         80 QLDAAIPDLKPLVGEDTVIIPLQN  103 (305)
T ss_pred             CHHHHHHHHHhhcCCCCEEEEeeC
Confidence            3311  111223456777776533

>PRK13984 putative oxidoreductase; Provisional

Probab=96.06  E-value=0.018  Score=67.58  Aligned_cols=38  Identities=26%  Similarity=0.212  Sum_probs=34.3

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ...+++++|||.|+.|+.+|..|+++|+.|++++..+.
T Consensus       280 ~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~  317 (604)
T PRK13984        280 EKKNKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSK  317 (604)
T ss_pred             ccCCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            35799999999999999999999999999999987653

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=95.97  E-value=0.17  Score=55.63  Aligned_cols=159  Identities=17%  Similarity=0.107  Sum_probs=102.7

Q ss_pred             cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcc
Q psy7896         250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGV  329 (718)
Q Consensus       250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv  329 (718)
                      +-+||+.|.+.--.. +   --++|+. .+---.+..+++...++|++...+...=.|+.++-|.+-+            
T Consensus        85 ~kgEsl~DTarvls~-y---~D~iviR-~~~~~~~~~~a~~s~vPVINa~~~~~HPtQaL~Dl~Ti~e------------  147 (332)
T PRK04284         85 GKKESTKDTARVLGG-M---YDGIEYR-GFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKE------------  147 (332)
T ss_pred             CCCcCHHHHHHHHHH-h---CCEEEEe-cCchHHHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH------------
Confidence            457888776543211 1   2233333 3333334445566678998876665666677777665422            


Q ss_pred             cccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---H-H----H-HhhcCc--e-ec
Q psy7896         330 KLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---A-L----Q-ASMEGY--E-VT  395 (718)
Q Consensus       330 ~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---a-l----~-a~~~G~--~-v~  395 (718)
                                .+.| .+.|++|++||-+  ++.+..+..+..||++|.++-+....   . .    + +...|.  . ..
T Consensus       148 ----------~~~g-~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~  216 (332)
T PRK04284        148 ----------HLKK-PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD  216 (332)
T ss_pred             ----------HhcC-CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence                      1112 4789999999985  88999999999999999997543211   1 1    0 112342  2 35


Q ss_pred             CHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcCC-CCeEEEEcCC
Q psy7896         396 TMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQMR-DDAIVCNIGH  436 (718)
Q Consensus       396 ~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~MK-~gAiLIN~GR  436 (718)
                      +++++++.+|+|.+..    +             ....|+.+.++.+| +++++.-++-
T Consensus       217 d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHplP  275 (332)
T PRK04284        217 DIDEGVKGSDVIYTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCLP  275 (332)
T ss_pred             CHHHHhCCCCEEEECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCCC
Confidence            7999999999999841    1             13358889999986 5999988875

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=95.96  E-value=0.013  Score=69.14  Aligned_cols=103  Identities=18%  Similarity=0.140  Sum_probs=70.6

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----C---HHHH-hccCcEEEEcCCCC--CC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----T---MEEA-AKEGGIFVTTTGCK--DI  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~---Leel-l~~aDiIi~atgt~--~l  416 (718)
                      ..+|.|+|+|++|+.+++.|...|.++++.|.||.+..++...|+.+.     +   ++++ ++++|.++.++++.  ++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~  479 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM  479 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence            467999999999999999999999999999999976555555665431     2   3333 56899998887653  22


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE  452 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~  452 (718)
                      .-.....++.|...++--.+  ++.+.+.|.+.+.+
T Consensus       480 ~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~  513 (601)
T PRK03659        480 KIVELCQQHFPHLHILARAR--GRVEAHELLQAGVT  513 (601)
T ss_pred             HHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCC
Confidence            22233455666666665555  34455667665544

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.93  E-value=0.043  Score=58.14  Aligned_cols=106  Identities=9%  Similarity=0.102  Sum_probs=81.4

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC-----------EEEEEecCCc--------cHHH-----HhhcCceecCH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-----------RVIVTEIDPI--------NALQ-----ASMEGYEVTTM  397 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-----------~Viv~d~dp~--------~al~-----a~~~G~~v~~L  397 (718)
                      .|..|...++.|+|.|.-|..+|+.+...++           ++.++|..-.        ...+     ...+.-...+|
T Consensus        19 ~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L   98 (254)
T cd00762          19 TKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDL   98 (254)
T ss_pred             hCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCH
Confidence            4678899999999999999999999988776           5777765321        1101     11122234689


Q ss_pred             HHHhc--cCcEEEEcCCCCCCcCHHHHhcCC---CCeEEEEcCCCCc--cccHHHHh
Q psy7896         398 EEAAK--EGGIFVTTTGCKDIIRGEHFLQMR---DDAIVCNIGHFDC--EIQVSWLD  447 (718)
Q Consensus       398 eell~--~aDiIi~atgt~~lI~~e~l~~MK---~gAiLIN~GRgd~--Eid~~aL~  447 (718)
                      .|+++  ..|+++-.++..++|+++.++.|.   +..++.-.+.-..  |+..+...
T Consensus        99 ~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~  155 (254)
T cd00762          99 EDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAY  155 (254)
T ss_pred             HHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHH
Confidence            99999  999999998888999999999999   8899998888654  77765443

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.92  E-value=0.0099  Score=64.14  Aligned_cols=94  Identities=20%  Similarity=0.320  Sum_probs=72.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh--------------hcCce-ecC----------H
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS--------------MEGYE-VTT----------M  397 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~--------------~~G~~-v~~----------L  397 (718)
                      +....+.++.++|.|-+|...+...+.+|+-|+.+|..|....+..              ..||- .++          +
T Consensus       159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~  238 (356)
T COG3288         159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV  238 (356)
T ss_pred             cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence            4456778899999999999999999999999999988876533222              12332 122          2


Q ss_pred             HHHhccCcEEEEc---CC--CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         398 EEAAKEGGIFVTT---TG--CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       398 eell~~aDiIi~a---tg--t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .+.+++.||||++   +|  .+.+++++..+.||+|+++|+.+-
T Consensus       239 a~~~~~~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa  282 (356)
T COG3288         239 AEQAKEVDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAA  282 (356)
T ss_pred             HHHhcCCCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehh
Confidence            3567899999986   34  356899999999999999999864

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=95.92  E-value=0.023  Score=59.74  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=65.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCcee-cC---HHHHh------ccCcEEEEcCCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYEV-TT---MEEAA------KEGGIFVTTTGCKD  415 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~v-~~---Leell------~~aDiIi~atgt~~  415 (718)
                      .|++|.|+|.|.||..+++.++.+|++ |++++.++.+...+...|... .+   ..+.+      +..|+++-++|...
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~d~vid~~G~~~  199 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATALAEPEVLAERQGGLQNGRGVDVALEFSGATA  199 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEecCchhhHHHHHHHhCCCCCCEEEECCCChH
Confidence            789999999999999999999999997 888877766543333345421 11   11211      24799999887654


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .+. ..++.++++..++.+|.
T Consensus       200 ~~~-~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       200 AVR-ACLESLDVGGTAVLAGS  219 (280)
T ss_pred             HHH-HHHHHhcCCCEEEEecc
Confidence            444 46889999999999985

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=95.90  E-value=0.013  Score=69.20  Aligned_cols=103  Identities=18%  Similarity=0.170  Sum_probs=68.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----CH---HHH-hccCcEEEEcCCCC--CC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----TM---EEA-AKEGGIFVTTTGCK--DI  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~L---eel-l~~aDiIi~atgt~--~l  416 (718)
                      ..+|.|+|+|++|+.+++.|+..|.++++.|.||.+.......|+.+.     +.   +++ +.++|.++.++++.  ++
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~  479 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL  479 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence            478999999999999999999999999999999986655555676542     22   222 45889888876652  22


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE  452 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~  452 (718)
                      .-....+.+.|...++--++  +......|.+.+.+
T Consensus       480 ~i~~~ar~~~p~~~iiaRa~--d~~~~~~L~~~Gad  513 (621)
T PRK03562        480 QLVELVKEHFPHLQIIARAR--DVDHYIRLRQAGVE  513 (621)
T ss_pred             HHHHHHHHhCCCCeEEEEEC--CHHHHHHHHHCCCC
Confidence            22234455556655554333  33445566665544

>KOG0023|consensus

Probab=95.90  E-value=0.019  Score=62.42  Aligned_cols=90  Identities=19%  Similarity=0.221  Sum_probs=58.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCce--ecC------HHHHhccCcEEEEcCC--CCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYE--VTT------MEEAAKEGGIFVTTTG--CKD  415 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~--v~~------Leell~~aDiIi~atg--t~~  415 (718)
                      .|+.|||+|+|-+|.--.+.+++||++|++++....+..++.. .|.+  +..      ++++.+.-|.++-+..  ..+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~~a~~  260 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSNLAEH  260 (360)
T ss_pred             CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeeecccc
Confidence            8999999999999999999999999999999877644433332 3321  111      2334444454443322  233


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      -+. ..++.||.+..+|-+|--
T Consensus       261 ~~~-~~~~~lk~~Gt~V~vg~p  281 (360)
T KOG0023|consen  261 ALE-PLLGLLKVNGTLVLVGLP  281 (360)
T ss_pred             chH-HHHHHhhcCCEEEEEeCc
Confidence            333 356677777777777654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=95.88  E-value=0.056  Score=62.40  Aligned_cols=37  Identities=32%  Similarity=0.359  Sum_probs=33.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..||+|.|||.|++|..+|..|+.+|.+|++++.++.
T Consensus       349 ~~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~  385 (517)
T PRK15317        349 FKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPE  385 (517)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEECcc
Confidence            4789999999999999999999999999999877653

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=95.84  E-value=0.23  Score=56.42  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=106.9

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEee-cCchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE-IDPINALQASMEGYELDEEVAALHLEHL  327 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D-~dp~r~v~AvaeGf~L~r~i~~~~l~~l  327 (718)
                      .+-+||+.|...--...    -.+.|+....-+ .+..+++..+++|++.- .+...=.|++++-|.+.+          
T Consensus       166 ~~kGESi~DTarvLs~y----~D~IviR~~~~~-~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E----------  230 (429)
T PRK11891        166 MAKGESIYDTSRVMSGY----VDALVIRHPEQG-SVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQR----------  230 (429)
T ss_pred             CCCCCCHHHHHHHHHHh----CCEEEEeCCchh-HHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHH----------
Confidence            34578887755432111    224444432222 44455566778888865 355555667777665432          


Q ss_pred             cccccccchhhhhh--hcccccCcEEEEEecC---hhHHHHHHHHHhC-CCEEEEEecCCcc---HH--HHhhcCc--e-
Q psy7896         328 GVKLTKLTEDQAKY--LDIMLAGKVAVVAGYG---DVGKGCAQSLRLF-GSRVIVTEIDPIN---AL--QASMEGY--E-  393 (718)
Q Consensus       328 gv~~~~~~~~~~~~--~g~eL~GktVGIIG~G---~IG~~vA~~l~~f-Ga~Viv~d~dp~~---al--~a~~~G~--~-  393 (718)
                                  .+  .|..+.|++|++||-+   ++....+..+..+ |++|.++-+....   ..  ++...|.  . 
T Consensus       231 ------------~~g~~g~~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~  298 (429)
T PRK11891        231 ------------EFSRLGKIVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQ  298 (429)
T ss_pred             ------------HhCccCCCcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEE
Confidence                        11  1224899999999995   8899999988776 9999997543321   11  1112243  2 


Q ss_pred             ecCHHHHhccCcEEEEcCC--------------CCCCcCHHHHhc-CCCCeEEEEcCCC-----CccccHHHH
Q psy7896         394 VTTMEEAAKEGGIFVTTTG--------------CKDIIRGEHFLQ-MRDDAIVCNIGHF-----DCEIQVSWL  446 (718)
Q Consensus       394 v~~Leell~~aDiIi~atg--------------t~~lI~~e~l~~-MK~gAiLIN~GRg-----d~Eid~~aL  446 (718)
                      +.+++++++.+|+|.+...              ....|+.+.++. .|+++++.-+.--     ..|++.+-+
T Consensus       299 ~~d~~eav~~ADVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcLPr~~R~~g~EIs~eV~  371 (429)
T PRK11891        299 TDDLAAGLRGADVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPLPRDSRPGANDLSTDLN  371 (429)
T ss_pred             EcCHHHHhCCCCEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCCCCCCCCCCcEeCHHHh
Confidence            3689999999999997421              123588888888 8999999877542     256665433

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.83  E-value=0.016  Score=65.86  Aligned_cols=67  Identities=30%  Similarity=0.412  Sum_probs=51.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH----HHHhhcCceecC---HHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA----LQASMEGYEVTT---MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a----l~a~~~G~~v~~---Leell~~aDiIi~atg  412 (718)
                      +.+|+|.|+|+|.-|+++|+.|+..|++|+++|.+|...    .....++..+..   ..+....+|+|+..+|
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPG   78 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPG   78 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCC
Confidence            459999999999999999999999999999999877651    122235544432   1256778999998755

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=95.82  E-value=0.031  Score=61.55  Aligned_cols=88  Identities=13%  Similarity=0.118  Sum_probs=60.0

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc---CCCC-CCcCH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT---TGCK-DIIRG  419 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a---tgt~-~lI~~  419 (718)
                      .+.||+|.|||.|.+|+.+|+.|...|+ +|+++.+..... .  .++. ....-+...++|||+.+   |+.. .+++.
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~-~--~~~~-~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~  246 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTL-P--YRTV-VREELSFQDPYDVIFFGSSESAYAFPHLSW  246 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcccc-c--hhhh-hhhhhhcccCCCEEEEcCCcCCCCCceeeH
Confidence            5899999999999999999999999996 699987765320 0  0000 00011345689999986   4333 36777


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.++..++ -++++.+-.
T Consensus       247 ~~~~~~~~-r~~iDLAvP  263 (338)
T PRK00676        247 ESLADIPD-RIVFDFNVP  263 (338)
T ss_pred             HHHhhccC-cEEEEecCC
Confidence            77765443 278887764

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.74  E-value=0.67  Score=51.17  Aligned_cols=169  Identities=11%  Similarity=0.004  Sum_probs=106.2

Q ss_pred             cchhhHHHHHhhhcccccCCcEEEEEecCCCCh---------hHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHH
Q psy7896         250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGK---------GCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA  320 (718)
Q Consensus       250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~---------~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~  320 (718)
                      +.+||+-|.+.--.    .--.+.|+....-|.         .+..+++.-+++|++...+ ..=.|++++-|.+-+   
T Consensus        90 ~kgEsl~Dtarvls----~~~D~iv~R~~~~g~~~~~~~~~~~~~~~a~~s~vPVINa~~~-~HPtQaLaDl~Ti~e---  161 (335)
T PRK04523         90 ETEEHIREVARVLS----RYVDLIGVRAFPKFVDWSKDRQDQVLNSFAKYSTVPVINMETI-THPCQELAHALALQE---  161 (335)
T ss_pred             CCCcCHHHHHHHHH----HhCcEEEEeCCccccccccchhHHHHHHHHHhCCCCEEECCCC-CChHHHHHHHHHHHH---
Confidence            46799877654321    123345555444332         2334455567899988777 766777777666532   


Q ss_pred             HHHHHHhcccccccchhhhhhhcccc-cCcEEEEEecC-------hhHHHHHHHHHhCCCEEEEEecC----CccHH-H-
Q psy7896         321 ALHLEHLGVKLTKLTEDQAKYLDIML-AGKVAVVAGYG-------DVGKGCAQSLRLFGSRVIVTEID----PINAL-Q-  386 (718)
Q Consensus       321 ~~~l~~lgv~~~~~~~~~~~~~g~eL-~GktVGIIG~G-------~IG~~vA~~l~~fGa~Viv~d~d----p~~al-~-  386 (718)
                                          ..| .+ +|++|+|++.|       ++.+..+..+..||++|.++-++    |.... . 
T Consensus       162 --------------------~~g-~~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~  220 (335)
T PRK04523        162 --------------------HFG-TTLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDW  220 (335)
T ss_pred             --------------------HhC-CccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHH
Confidence                                123 36 79999887654       68888888899999999998662    21111 0 


Q ss_pred             ----HhhcC--ce-ecCHHHHhccCcEEEEcC-------CC------------CCCcCHHHHhcCCCCeEEEEcCC--CC
Q psy7896         387 ----ASMEG--YE-VTTMEEAAKEGGIFVTTT-------GC------------KDIIRGEHFLQMRDDAIVCNIGH--FD  438 (718)
Q Consensus       387 ----a~~~G--~~-v~~Leell~~aDiIi~at-------gt------------~~lI~~e~l~~MK~gAiLIN~GR--gd  438 (718)
                          +...|  +. ..+++++++.+|+|.+..       +.            ...+|.+.++..+ ++++.-+.-  -+
T Consensus       221 ~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~~~~y~v~~~ll~~a~-~~i~mHcLP~~Rg  299 (335)
T PRK04523        221 AEQNAAESGGSLTVSHDIDSAYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMALTN-NGVFSHCLPLRRN  299 (335)
T ss_pred             HHHHHHHcCCeEEEEcCHHHHhCCCCEEEeceeeccccCCcccccHHHHHhCcCCcCCHHHHhCCC-CCEEECCCCCCCC
Confidence                11234  22 367999999999999731       11            2348888887664 678887764  23


Q ss_pred             ccccHHHHhc
Q psy7896         439 CEIQVSWLDK  448 (718)
Q Consensus       439 ~Eid~~aL~~  448 (718)
                      .|++.+-+..
T Consensus       300 ~Ei~~~V~d~  309 (335)
T PRK04523        300 VKVTDAVMDS  309 (335)
T ss_pred             CeeCHHHhCC
Confidence            5777654443

>PTZ00117 malate dehydrogenase; Provisional

Probab=95.74  E-value=0.051  Score=59.23  Aligned_cols=90  Identities=18%  Similarity=0.281  Sum_probs=59.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHH-HHh-------hcC--cee---cCHHHHhccCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINAL-QAS-------MEG--YEV---TTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al-~a~-------~~G--~~v---~~Leell~~aDiIi~at  411 (718)
                      .+.++|+|||.|.+|..+|..+...| +++.++|+++..+. ++.       ..+  ..+   .+.+ .++.||+|+.+.
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita   81 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA   81 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence            45689999999999999999998777 78999998874321 010       011  111   3455 779999999875


Q ss_pred             CC---CCC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896         412 GC---KDI------------IR--GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       412 gt---~~l------------I~--~e~l~~MK~gAiLIN~GR  436 (718)
                      +.   .++            +.  .+.+....+.++++|++.
T Consensus        82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN  123 (319)
T PTZ00117         82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTN  123 (319)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            32   211            11  123445567888888855

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=95.74  E-value=0.033  Score=63.35  Aligned_cols=39  Identities=28%  Similarity=0.335  Sum_probs=35.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++.||+|+|||.|..|..++.-|...|++|+.+-+.|.
T Consensus       171 ~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~  209 (443)
T COG2072         171 EDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPP  209 (443)
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence            378999999999999999999999999999999876653

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=95.74  E-value=0.031  Score=61.25  Aligned_cols=91  Identities=19%  Similarity=0.197  Sum_probs=64.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCce-ec---C---HHHHhccCcEEEEcCCCCCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYE-VT---T---MEEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~-v~---~---Leell~~aDiIi~atgt~~lI  417 (718)
                      -.|++|.|.|.|.||..+++.++.+|++|++++.++.+..++ ...|.. +.   +   +.++....|+++-++|....+
T Consensus       182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~D~vid~~g~~~~~  261 (360)
T PLN02586        182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGADSFLVSTDPEKMKAAIGTMDYIIDTVSAVHAL  261 (360)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCCcEEEcCCCHHHHHhhcCCCCEEEECCCCHHHH
Confidence            368999999999999999999999999998876655432222 233442 11   1   223333579999888864433


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                      . +.++.++++..++.+|..
T Consensus       262 ~-~~~~~l~~~G~iv~vG~~  280 (360)
T PLN02586        262 G-PLLGLLKVNGKLITLGLP  280 (360)
T ss_pred             H-HHHHHhcCCcEEEEeCCC
Confidence            3 468899999999999863

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.74  E-value=0.018  Score=57.92  Aligned_cols=88  Identities=23%  Similarity=0.173  Sum_probs=52.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc---------------------Ccee-cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---------------------GYEV-TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~---------------------G~~v-~~Leell~~aDi  406 (718)
                      ++|+|||.|.+|...|..+...|.+|+.+|.++.+.. ....                     .+.+ .+.++.++++|+
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~-~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv   79 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVE-ALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADV   79 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHH-HHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SE
T ss_pred             CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHH-HHhhccccccccchhhhhccccccccchhhhhhhhhhhccce
Confidence            5899999999999999999999999999999875321 1111                     1222 356777889999


Q ss_pred             EEEcCCCC----CCcC--------HHHHhcCCCCeEEEEcCCC
Q psy7896         407 FVTTTGCK----DIIR--------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       407 Ii~atgt~----~lI~--------~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++|.+|.    +..|        ....+.++++.++|+-+-.
T Consensus        80 ~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STv  122 (185)
T PF03721_consen   80 VFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTV  122 (185)
T ss_dssp             EEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSS
T ss_pred             EEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEE
Confidence            99875442    1111        1223445667777766553

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=95.74  E-value=0.031  Score=58.24  Aligned_cols=36  Identities=22%  Similarity=0.195  Sum_probs=32.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..|++|.|||.|.+|..+|..++..|.+|+++.+.+
T Consensus       139 ~~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~v~~~~  174 (300)
T TIGR01292       139 FKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD  174 (300)
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhhcCEEEEEEeCc
Confidence            468999999999999999999999999999987654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK12862 malic enzyme; Reviewed

Probab=95.71  E-value=0.045  Score=66.24  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=82.4

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCC------------ccHHHHhhcCceecCHHHHhccCcE
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDP------------INALQASMEGYEVTTMEEAAKEGGI  406 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp------------~~al~a~~~G~~v~~Leell~~aDi  406 (718)
                      .|..+...+|.|.|.|.-|..+|+.+...|.   +++++|+.-            .+..-+..  ....+|.|+++.+|+
T Consensus       187 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~--~~~~~l~e~~~~~~v  264 (763)
T PRK12862        187 VGKDIEDVKLVASGAGAAALACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWKARYAQK--TDARTLAEVIEGADV  264 (763)
T ss_pred             hCCChhhcEEEEEChhHHHHHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHHHHHhhh--cccCCHHHHHcCCCE
Confidence            4678899999999999999999999999999   788887431            11111111  134589999999999


Q ss_pred             EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      ++-+++ .++++++.++.|.+..++.-.+.-..|+..+...
T Consensus       265 ~iG~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~  304 (763)
T PRK12862        265 FLGLSA-AGVLKPEMVKKMAPRPLIFALANPTPEILPEEAR  304 (763)
T ss_pred             EEEcCC-CCCCCHHHHHHhccCCEEEeCCCCcccCCHHHHH
Confidence            998877 7999999999999999999999877788775433

>PRK12861 malic enzyme; Reviewed

Probab=95.68  E-value=0.042  Score=66.21  Aligned_cols=103  Identities=17%  Similarity=0.224  Sum_probs=82.1

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCC------------ccHHHHhhcCceecCHHHHhccCcE
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDP------------INALQASMEGYEVTTMEEAAKEGGI  406 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp------------~~al~a~~~G~~v~~Leell~~aDi  406 (718)
                      .|..+...+|.|.|.|.-|..+++.+...|.   +++++|+.-            .+..-+..  ....+|.|+++.+|+
T Consensus       183 ~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~--~~~~~L~eai~~adv  260 (764)
T PRK12861        183 VGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDKERFAQE--TDARTLAEVIGGADV  260 (764)
T ss_pred             hCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHHHHHHhh--cCCCCHHHHHhcCCE
Confidence            4678889999999999999999999999999   788887322            11111211  234589999999999


Q ss_pred             EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      ++-+++ .++++++.++.|.+..|+.-.+.-..|+.++...
T Consensus       261 liG~S~-~g~ft~e~v~~Ma~~PIIFaLsNPtpE~~pe~a~  300 (764)
T PRK12861        261 FLGLSA-GGVLKAEMLKAMAARPLILALANPTPEIFPELAH  300 (764)
T ss_pred             EEEcCC-CCCCCHHHHHHhccCCEEEECCCCCccCCHHHHH
Confidence            998876 7999999999999999999998877788776443

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=95.67  E-value=0.016  Score=59.78  Aligned_cols=91  Identities=23%  Similarity=0.216  Sum_probs=65.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCc-ee----cCHHHHhccCcEEEEcCCCCCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGY-EV----TTMEEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~-~v----~~Leell~~aDiIi~atgt~~lI  417 (718)
                      ..++||+|.|||.|.+|..=++.+...|++|+++-......+... ..+- ..    -..++ +..+++++.+|++. -+
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~-~~~~~lviaAt~d~-~l   85 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAED-LDDAFLVIAATDDE-EL   85 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhh-hcCceEEEEeCCCH-HH
Confidence            578999999999999999999999999999999865543332221 1111 11    12223 33489998888874 56


Q ss_pred             CHHHHhcCCCCeEEEEcCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GR  436 (718)
                      |++.+...+.-.++||+.-
T Consensus        86 n~~i~~~a~~~~i~vNv~D  104 (210)
T COG1648          86 NERIAKAARERRILVNVVD  104 (210)
T ss_pred             HHHHHHHHHHhCCceeccC
Confidence            7777777788789999755

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.65  E-value=0.05  Score=59.27  Aligned_cols=92  Identities=17%  Similarity=0.167  Sum_probs=59.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHH---hhcC------ceec-CHHHHhccCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQA---SMEG------YEVT-TMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a---~~~G------~~v~-~Leell~~aDiIi~atgt  413 (718)
                      -.+++|+|||.|+||..+|-.+...|.  ++.++|++...+...   ..+.      ..+. +-.+.+++||+|+.+.|.
T Consensus         4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~   83 (315)
T PRK00066          4 KQHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA   83 (315)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence            467899999999999999999988777  799999866432111   1111      1111 223568999999987542


Q ss_pred             ---CCC------------cC--HHHHhcCCCCeEEEEcCCC
Q psy7896         414 ---KDI------------IR--GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ---~~l------------I~--~e~l~~MK~gAiLIN~GRg  437 (718)
                         .++            +.  .+.+..-.+.++++|++..
T Consensus        84 ~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP  124 (315)
T PRK00066         84 PQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNP  124 (315)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence               111            11  1223333468899998853

>PRK06199 ornithine cyclodeaminase; Validated

Probab=95.64  E-value=0.054  Score=60.55  Aligned_cols=96  Identities=16%  Similarity=0.163  Sum_probs=68.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CC--CEEEEEecCCccHHH--Hh---h-cC---ce-ecCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FG--SRVIVTEIDPINALQ--AS---M-EG---YE-VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fG--a~Viv~d~dp~~al~--a~---~-~G---~~-v~~Leell~~aDiIi~atgt  413 (718)
                      .-++++|||.|..++.-++.+.. +.  -+|.++++++.++..  ..   . .|   +. +.+.++++++||||+++|..
T Consensus       154 da~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s  233 (379)
T PRK06199        154 DSKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSG  233 (379)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCC
Confidence            35899999999999999988765 42  389999998865321  11   1 12   22 35799999999999988642


Q ss_pred             -C------CCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         414 -K------DIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       414 -~------~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                       .      -+|..+   .+|+|+.++.+|.  .|+|...+.
T Consensus       234 ~~~~~s~~Pv~~~~---~lkpG~hv~~ig~--~eld~~~l~  269 (379)
T PRK06199        234 ETGDPSTYPYVKRE---WVKPGAFLLMPAA--CRIDEGMEQ  269 (379)
T ss_pred             CCCCCCcCcEecHH---HcCCCcEEecCCc--ccCCHHHHh
Confidence             2      566654   5689998888776  477755444

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=95.64  E-value=0.032  Score=61.14  Aligned_cols=85  Identities=14%  Similarity=0.187  Sum_probs=56.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEEE-EecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVIV-TEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Viv-~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                      .+|+|||+|+||+.+++.+... ++++.. +++++..........+...+.++++.+.|++++|+++.-- -......++
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~th-~~~~~~~L~   82 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSATD-IPEQAPYFA   82 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCccC-HHHHHHHHH
Confidence            5899999999999999988765 788775 6776522222111223345677778889999998765321 233445567


Q ss_pred             CCeEEEEc
Q psy7896         427 DDAIVCNI  434 (718)
Q Consensus       427 ~gAiLIN~  434 (718)
                      .|.-+|.+
T Consensus        83 aG~NVV~s   90 (324)
T TIGR01921        83 QFANTVDS   90 (324)
T ss_pred             cCCCEEEC
Confidence            76666665

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.62  E-value=0.017  Score=60.13  Aligned_cols=91  Identities=10%  Similarity=0.007  Sum_probs=60.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--CH-HHHhccCcEEEEcCCCCCCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--TM-EEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~L-eell~~aDiIi~atgt~~lI  417 (718)
                      ...++|++|.|||.|.||..=++.|..+|++|+++-++....++.. ..| +.+.  +. ++-+..+++|+.+|+++ -+
T Consensus        20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~-~v   98 (223)
T PRK05562         20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDE-KL   98 (223)
T ss_pred             EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCH-HH
Confidence            4567799999999999999999999999999999965544333322 111 2221  11 23457788888888764 45


Q ss_pred             CHHHHhcCCCCeEEEEc
Q psy7896         418 RGEHFLQMRDDAIVCNI  434 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~  434 (718)
                      |....+..+.-.+++|+
T Consensus        99 N~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         99 NNKIRKHCDRLYKLYID  115 (223)
T ss_pred             HHHHHHHHHHcCCeEEE
Confidence            55555555554455554

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.60  E-value=0.048  Score=58.39  Aligned_cols=69  Identities=19%  Similarity=0.195  Sum_probs=50.0

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh-cC----ce-ec---CHHHHhccCcEEEEcCCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM-EG----YE-VT---TMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~-~G----~~-v~---~Leell~~aDiIi~atgt  413 (718)
                      .+.||++.|||.|..|++++..|..+|+ +|+++++++.++..... .+    .. +.   ++.+.+.++|+||.+|.-
T Consensus       122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~  200 (282)
T TIGR01809       122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPA  200 (282)
T ss_pred             ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCC
Confidence            4679999999999999999999999998 79999988765432211 01    11 11   123456788999988765

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=95.57  E-value=0.028  Score=60.95  Aligned_cols=92  Identities=18%  Similarity=0.214  Sum_probs=63.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-c--------CHHHHhc------cC----cE
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-T--------TMEEAAK------EG----GI  406 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~--------~Leell~------~a----Di  406 (718)
                      -.|.+|.|+|.|.||..+++.++.+|++|++++.++.+...+...|... .        ++.+.++      ..    |+
T Consensus       165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~~d~  244 (349)
T TIGR03201       165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADLTLNPKDKSAREVKKLIKAFAKARGLRSTGWK  244 (349)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceEecCccccHHHHHHHHHhhcccCCCCCCcCE
Confidence            3589999999999999999999999999999887776543333334321 1        1222222      12    36


Q ss_pred             EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ++.++|+...+ ...++.++++..++..|...
T Consensus       245 v~d~~g~~~~~-~~~~~~l~~~G~iv~~G~~~  275 (349)
T TIGR03201       245 IFECSGSKPGQ-ESALSLLSHGGTLVVVGYTM  275 (349)
T ss_pred             EEECCCChHHH-HHHHHHHhcCCeEEEECcCC
Confidence            77787765433 24578889999999988753

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=95.55  E-value=0.45  Score=53.67  Aligned_cols=120  Identities=21%  Similarity=0.194  Sum_probs=82.4

Q ss_pred             eEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc--cccCcEEEEEec-----C---hhHHHH
Q psy7896         294 RVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI--MLAGKVAVVAGY-----G---DVGKGC  363 (718)
Q Consensus       294 ~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~--eL~GktVGIIG~-----G---~IG~~v  363 (718)
                      +|++...+...=.|++++-|.+-+                       ..|.  .+.|++|+|+|-     |   ++.+.+
T Consensus       154 PVINa~~~~~HPtQaLaDl~TI~E-----------------------~~G~~~~l~g~kVaivg~~~~~~g~~~~Va~Sl  210 (395)
T PRK07200        154 TLVNLQCDIDHPTQSMADLLHLIE-----------------------HFGGLENLKGKKIAMTWAYSPSYGKPLSVPQGI  210 (395)
T ss_pred             eEEECCCCCCCcHHHHHHHHHHHH-----------------------HhCCCcccCCCEEEEEeccccccCCcchHHHHH
Confidence            588877666666777777665532                       1232  478999999985     5   567899


Q ss_pred             HHHHHhCCCEEEEEecCCc---cHH-H-----HhhcC--ce-ecCHHHHhccCcEEEEcC----C---------------
Q psy7896         364 AQSLRLFGSRVIVTEIDPI---NAL-Q-----ASMEG--YE-VTTMEEAAKEGGIFVTTT----G---------------  412 (718)
Q Consensus       364 A~~l~~fGa~Viv~d~dp~---~al-~-----a~~~G--~~-v~~Leell~~aDiIi~at----g---------------  412 (718)
                      +..+..||++|.++-+...   ... +     +...|  +. ..+++++++.+|+|.+..    +               
T Consensus       211 ~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~aDvVYtd~W~sm~~~~er~~~~~~~~~~  290 (395)
T PRK07200        211 IGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDADIVYPKSWAPYKVMEERTELYRAGDHE  290 (395)
T ss_pred             HHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCeeecccccccccccccccch
Confidence            9999999999999754322   111 1     11234  33 358999999999999742    1               


Q ss_pred             ----------------CCCCcCHHHHhcCCCC-eEEEEcCC
Q psy7896         413 ----------------CKDIIRGEHFLQMRDD-AIVCNIGH  436 (718)
Q Consensus       413 ----------------t~~lI~~e~l~~MK~g-AiLIN~GR  436 (718)
                                      ...-||.+.++..|++ +++.-++-
T Consensus       291 ~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcLP  331 (395)
T PRK07200        291 GIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCLP  331 (395)
T ss_pred             hhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCCC
Confidence                            1123788888888885 99998865

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=95.51  E-value=0.076  Score=64.09  Aligned_cols=105  Identities=20%  Similarity=0.308  Sum_probs=82.4

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCCc---------cHHH-HhhcCceecCHHHHhccCcEEE
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDPI---------NALQ-ASMEGYEVTTMEEAAKEGGIFV  408 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp~---------~al~-a~~~G~~v~~Leell~~aDiIi  408 (718)
                      .|..+...+|.|.|.|.-|..+|+.+...|.   +++++|..-.         ...+ ....-....+|.|+++.+|+++
T Consensus       179 ~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~i  258 (752)
T PRK07232        179 VGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFL  258 (752)
T ss_pred             hCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEE
Confidence            4678889999999999999999999999999   7888874321         1111 1111123458999999999999


Q ss_pred             EcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       409 ~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      -+++ .++++++.++.|.+..++.-.+.-..|+..+...
T Consensus       259 G~s~-~g~~~~~~v~~M~~~piifalsNP~~E~~p~~a~  296 (752)
T PRK07232        259 GLSA-AGVLTPEMVKSMADNPIIFALANPDPEITPEEAK  296 (752)
T ss_pred             EcCC-CCCCCHHHHHHhccCCEEEecCCCCccCCHHHHH
Confidence            8876 7999999999999999999999877788875433

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=95.49  E-value=0.034  Score=61.51  Aligned_cols=77  Identities=17%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc------eecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY------EVTTMEEAAKEGGIFVTTTGCKDIIRGEH  421 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~------~v~~Leell~~aDiIi~atgt~~lI~~e~  421 (718)
                      ++||||||.|--|+.++..++.+|.+|++.|.++........+..      ....+.+++..||+|+.=-.+   ++.+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~EfE~---V~~~a   77 (375)
T COG0026           1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITYEFEN---VPAEA   77 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEEeecc---CCHHH
Confidence            479999999999999999999999999999877754321111111      122477889999998642222   44455


Q ss_pred             HhcCCC
Q psy7896         422 FLQMRD  427 (718)
Q Consensus       422 l~~MK~  427 (718)
                      ++.+..
T Consensus        78 L~~l~~   83 (375)
T COG0026          78 LEKLAA   83 (375)
T ss_pred             HHHHHh
Confidence            555433

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=95.49  E-value=0.08  Score=59.82  Aligned_cols=35  Identities=20%  Similarity=0.153  Sum_probs=31.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       165 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  199 (446)
T TIGR01424       165 LPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGE  199 (446)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            37899999999999999999999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=95.48  E-value=0.039  Score=59.89  Aligned_cols=89  Identities=16%  Similarity=0.122  Sum_probs=62.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CC-CEEEEEecCCccHHHHhhcCceecCHHHHhc--cCcEEEEcCCCC---CCcCH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FG-SRVIVTEIDPINALQASMEGYEVTTMEEAAK--EGGIFVTTTGCK---DIIRG  419 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fG-a~Viv~d~dp~~al~a~~~G~~v~~Leell~--~aDiIi~atgt~---~lI~~  419 (718)
                      .|.+|.|+|.|.||..+++.++. +| ++|+++++++.+...+...+... ..+++..  ..|+++-++|..   ..+ .
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~~~~-~~~~~~~~~g~d~viD~~G~~~~~~~~-~  240 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFADETY-LIDDIPEDLAVDHAFECVGGRGSQSAI-N  240 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcCcee-ehhhhhhccCCcEEEECCCCCccHHHH-H
Confidence            58999999999999999999986 55 58999988876543332223222 2223322  379999888842   223 3


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.++.++++..++.+|..
T Consensus       241 ~~~~~l~~~G~iv~~G~~  258 (341)
T cd08237         241 QIIDYIRPQGTIGLMGVS  258 (341)
T ss_pred             HHHHhCcCCcEEEEEeec
Confidence            578899999999998864

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.47  E-value=0.026  Score=60.90  Aligned_cols=87  Identities=21%  Similarity=0.273  Sum_probs=58.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhc--------Cc--ee--cCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASME--------GY--EV--TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~--------G~--~v--~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||.|.+|+.+|..|...|.  +|.++|+++.++....++        +.  .+  .+. +.++.||+|+.++|..
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~-~~l~~aDIVIitag~~   79 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDY-SDCKDADIVVITAGAP   79 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCH-HHhCCCCEEEEccCCC
Confidence            479999999999999999998884  799999887653211111        11  11  233 4578999999986642


Q ss_pred             ---CC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896         415 ---DI------------IR--GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ---~l------------I~--~e~l~~MK~gAiLIN~GR  436 (718)
                         ++            +.  .+.+.+..+.+++++++.
T Consensus        80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN  118 (306)
T cd05291          80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASN  118 (306)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence               11            11  123455577889999885

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PLN02740 Alcohol dehydrogenase-like

Probab=95.46  E-value=0.037  Score=60.94  Aligned_cols=91  Identities=23%  Similarity=0.375  Sum_probs=64.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ecC-------HHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VTT-------MEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~~-------Leell~-----~aDiIi~at  411 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.+       +.+.++     ..|+++.++
T Consensus       197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~dvvid~~  276 (381)
T PLN02740        197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGITDFINPKDSDKPVHERIREMTGGGVDYSFECA  276 (381)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence            468999999999999999999999999 699988777654333334532 111       222221     479999988


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      |....+. ..+..++++ ..++.+|..
T Consensus       277 G~~~~~~-~a~~~~~~g~G~~v~~G~~  302 (381)
T PLN02740        277 GNVEVLR-EAFLSTHDGWGLTVLLGIH  302 (381)
T ss_pred             CChHHHH-HHHHhhhcCCCEEEEEccC
Confidence            8654444 567788886 788888764

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=95.45  E-value=0.06  Score=57.94  Aligned_cols=63  Identities=22%  Similarity=0.295  Sum_probs=50.9

Q ss_pred             cccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         246 DNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       246 d~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      -|...++|..+.......+..++|++++|+|+|.+|+.+|+.|+++|.+|++++.++.+...+
T Consensus       128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~  190 (287)
T TIGR02853       128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARI  190 (287)
T ss_pred             EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence            345567777765555555667899999999999999999999999999999999887665443

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=95.45  E-value=0.025  Score=65.92  Aligned_cols=102  Identities=18%  Similarity=0.177  Sum_probs=63.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----C---HHHH-hccCcEEEEcCCCC--CCc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----T---MEEA-AKEGGIFVTTTGCK--DII  417 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~---Leel-l~~aDiIi~atgt~--~lI  417 (718)
                      .++.|+|+|++|+.+|+.|+..|.+|++.|.|+.+..++...|+.+.     +   ++++ ++++|.++.++++.  +..
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~  497 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGE  497 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHH
Confidence            57899999999999999999999999999999877655555665432     2   2333 46888777665432  110


Q ss_pred             CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE  452 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~  452 (718)
                      -......+.+...++-..+  +.-+.+.+++.+.+
T Consensus       498 iv~~~~~~~~~~~iiar~~--~~~~~~~l~~~Gad  530 (558)
T PRK10669        498 IVASAREKRPDIEIIARAH--YDDEVAYITERGAN  530 (558)
T ss_pred             HHHHHHHHCCCCeEEEEEC--CHHHHHHHHHcCCC
Confidence            1112334445555554333  22333445554433

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.44  E-value=0.072  Score=60.44  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=31.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +++|.|||.|.||..+|..++.+|.+|+++++.+
T Consensus       166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~  199 (450)
T TIGR01421       166 PKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHE  199 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            5899999999999999999999999999987654

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=95.43  E-value=0.04  Score=64.25  Aligned_cols=36  Identities=28%  Similarity=0.285  Sum_probs=32.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..|++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       141 ~~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~  176 (555)
T TIGR03143       141 FTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP  176 (555)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC
Confidence            468999999999999999999999999999988665

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=95.43  E-value=0.025  Score=61.71  Aligned_cols=38  Identities=29%  Similarity=0.309  Sum_probs=34.2

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      +..+++++|||.|+.|..+|..|++.|..|++++..+.
T Consensus        15 ~~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~   52 (352)
T PRK12770         15 PPTGKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE   52 (352)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            45789999999999999999999999999999997654

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.42  E-value=0.042  Score=61.86  Aligned_cols=68  Identities=29%  Similarity=0.385  Sum_probs=49.8

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH----H-hhcCceec---CHHHHhccCcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ----A-SMEGYEVT---TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~----a-~~~G~~v~---~Leell~~aDiIi~atg  412 (718)
                      .+.+|+|.|+|.|.+|..+|+.|...|++|+++|.++....+    . ...|..+.   ..++.....|+|+.+++
T Consensus         2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g   77 (450)
T PRK14106          2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPG   77 (450)
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCC
Confidence            467999999999999999999999999999999887532221    1 11243321   23456678999988755

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=95.42  E-value=0.095  Score=56.26  Aligned_cols=37  Identities=22%  Similarity=0.303  Sum_probs=33.8

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp  381 (718)
                      .+.||++.|+|.|.+|++++..|...|++ |+++++++
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~  160 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD  160 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence            46789999999999999999999999996 99999876

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.41  E-value=0.033  Score=63.10  Aligned_cols=66  Identities=24%  Similarity=0.310  Sum_probs=48.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCH-HHHhccCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTM-EEAAKEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~L-eell~~aDiIi~at  411 (718)
                      ++|++|.|+|+|.+|+.+|+.|+..|.+|.++|..+.........|..+... .+-+.++|+||..+
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~sp   73 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLSP   73 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEECC
Confidence            6789999999999999999999999999999996543222222345544332 23356799998754

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=95.38  E-value=0.058  Score=57.25  Aligned_cols=107  Identities=17%  Similarity=0.134  Sum_probs=76.3

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhC----CC-------EEEEEecCCcc--------H--HHHhhcCce---ecCH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLF----GS-------RVIVTEIDPIN--------A--LQASMEGYE---VTTM  397 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~f----Ga-------~Viv~d~dp~~--------a--l~a~~~G~~---v~~L  397 (718)
                      .|..|...++.|+|.|..|..+|+.+...    |.       ++.++|++..-        .  .......-.   ..+|
T Consensus        19 ~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~~L   98 (255)
T PF03949_consen   19 TGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDREDLNPHKKPFARKTNPEKDWGSL   98 (255)
T ss_dssp             HTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTTSSHSHHHHHHHBSSSTTT--SSH
T ss_pred             hCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccCccCChhhhhhhccCcccccccCH
Confidence            46789999999999999999999999877    87       48888764210        1  111111111   2489


Q ss_pred             HHHhccC--cEEEEcCCCCCCcCHHHHhcCCC---CeEEEEcCCCCc--cccHHHHhc
Q psy7896         398 EEAAKEG--GIFVTTTGCKDIIRGEHFLQMRD---DAIVCNIGHFDC--EIQVSWLDK  448 (718)
Q Consensus       398 eell~~a--DiIi~atgt~~lI~~e~l~~MK~---gAiLIN~GRgd~--Eid~~aL~~  448 (718)
                      .|+++.+  |+++-+++..++|+++.++.|.+   ..++.-.+.-..  |+..+...+
T Consensus        99 ~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~  156 (255)
T PF03949_consen   99 LEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYE  156 (255)
T ss_dssp             HHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHH
T ss_pred             HHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHh
Confidence            9999988  99999988899999999999988   899998888655  777765443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.38  E-value=0.033  Score=59.26  Aligned_cols=95  Identities=18%  Similarity=0.144  Sum_probs=67.9

Q ss_pred             hhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccH-------HHHhhcCceecCHHHHhccCcEEEE-c-
Q psy7896         341 YLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA-------LQASMEGYEVTTMEEAAKEGGIFVT-T-  410 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~a-------l~a~~~G~~v~~Leell~~aDiIi~-a-  410 (718)
                      ..|.+++..||+|+|+ |.||..+|+.+.+.+++....-+|....       +++.+.--.+++++..+.+.|+++- + 
T Consensus       160 ~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~~~~~i~s~d~~~~~e~i~v~vAs  239 (351)
T COG5322         160 QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEELGRGKIMSLDYALPQEDILVWVAS  239 (351)
T ss_pred             HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhcccccCCCeeeeccccccccceEEEEee
Confidence            3588999999999997 8999999999999999877766554321       1122212235677777666666553 4 


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.+-..|+.++   +|+|+.+++-|+-.
T Consensus       240 ~~~g~~I~pq~---lkpg~~ivD~g~P~  264 (351)
T COG5322         240 MPKGVEIFPQH---LKPGCLIVDGGYPK  264 (351)
T ss_pred             cCCCceechhh---ccCCeEEEcCCcCc
Confidence            34445677755   59999999999863

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=95.37  E-value=0.066  Score=59.07  Aligned_cols=78  Identities=23%  Similarity=0.288  Sum_probs=57.6

Q ss_pred             HHHHHHHHHhCCCEEEEEecCCcc-----HHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----CcCHHHHhcCCCCe
Q psy7896         360 GKGCAQSLRLFGSRVIVTEIDPIN-----ALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----IIRGEHFLQMRDDA  429 (718)
Q Consensus       360 G~~vA~~l~~fGa~Viv~d~dp~~-----al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI~~e~l~~MK~gA  429 (718)
                      |..+|..|..-|.+|+++|+++..     .......|..+ .+..++++++|+|+++..+..    ++ ......++++.
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~  110 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA  110 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence            889999999999999999987742     11223456654 467888999999999866543    22 24456789999


Q ss_pred             EEEEcCCCC
Q psy7896         430 IVCNIGHFD  438 (718)
Q Consensus       430 iLIN~GRgd  438 (718)
                      +++|++-+.
T Consensus       111 IVId~ST~~  119 (342)
T PRK12557        111 VICNTCTVS  119 (342)
T ss_pred             EEEEecCCC
Confidence            999998764

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.37  E-value=0.022  Score=57.93  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|.+++|.|||.|.+|..+|+.|...|. +++++|.|.
T Consensus        18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~   55 (202)
T TIGR02356        18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH   55 (202)
T ss_pred             HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence            4789999999999999999999999998 899998874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=95.34  E-value=0.077  Score=59.93  Aligned_cols=35  Identities=17%  Similarity=0.287  Sum_probs=32.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~  208 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRD  208 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            46999999999999999999999999999998655

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=95.33  E-value=0.047  Score=49.74  Aligned_cols=64  Identities=23%  Similarity=0.239  Sum_probs=47.3

Q ss_pred             EEEEEecChhHHHHHHHHHhC--CCEEE-EEecCCccHHH-HhhcCce-ecCHHHHhc--cCcEEEEcCCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLF--GSRVI-VTEIDPINALQ-ASMEGYE-VTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~f--Ga~Vi-v~d~dp~~al~-a~~~G~~-v~~Leell~--~aDiIi~atgt  413 (718)
                      +|||||+|.+|+.....+...  +.++. ++|++|.+... +...|+. +.++++++.  +.|+++.+|.+
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~   72 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP   72 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence            799999999999999888766  45654 57888765433 2234544 567999987  68998888766

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>PRK06370 mercuric reductase; Validated

Probab=95.32  E-value=0.096  Score=59.38  Aligned_cols=35  Identities=40%  Similarity=0.498  Sum_probs=32.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       170 ~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~  204 (463)
T PRK06370        170 LPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGP  204 (463)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            46999999999999999999999999999998755

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=95.30  E-value=0.04  Score=59.54  Aligned_cols=90  Identities=12%  Similarity=0.017  Sum_probs=65.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHH-HHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTME-EAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Le-ell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      -.|.+|.|.|.|.+|...++.++.+|++|++++.++.+...+...|... .+.. +.-+..|+++.+++.... -...++
T Consensus       164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~~~-~~~~~~  242 (329)
T TIGR02822       164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAGGL-VPPALE  242 (329)
T ss_pred             CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcHHH-HHHHHH
Confidence            3589999999999999999999999999999888776654444556532 2211 111236777766655443 346788


Q ss_pred             cCCCCeEEEEcCC
Q psy7896         424 QMRDDAIVCNIGH  436 (718)
Q Consensus       424 ~MK~gAiLIN~GR  436 (718)
                      .++++..++.+|.
T Consensus       243 ~l~~~G~~v~~G~  255 (329)
T TIGR02822       243 ALDRGGVLAVAGI  255 (329)
T ss_pred             hhCCCcEEEEEec
Confidence            9999999999886

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.29  E-value=0.038  Score=63.08  Aligned_cols=92  Identities=20%  Similarity=0.195  Sum_probs=65.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcC-ceec--C-HHHHhccCcEEEEcCCCCCCcC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEG-YEVT--T-MEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G-~~v~--~-Leell~~aDiIi~atgt~~lI~  418 (718)
                      .+|+||+|.|||.|.++..=++.|..+|++|+++-++....+... ..| +...  + .++.++.+++|+.+|+++ -+|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~-~~n   86 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDD-AVN   86 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCH-HHh
Confidence            578999999999999999999999999999999854433333222 122 2211  1 235577899998988775 467


Q ss_pred             HHHHhcCCCCeEEEEcCC
Q psy7896         419 GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GR  436 (718)
                      .+.....+...+++|+.-
T Consensus        87 ~~i~~~a~~~~~lvN~~d  104 (457)
T PRK10637         87 QRVSEAAEARRIFCNVVD  104 (457)
T ss_pred             HHHHHHHHHcCcEEEECC
Confidence            666666667778888754

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.29  E-value=0.15  Score=54.95  Aligned_cols=39  Identities=15%  Similarity=0.167  Sum_probs=34.1

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      ..++||++.|+|.|..+++++..+...|+ +|+++++++.
T Consensus       120 ~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~  159 (288)
T PRK12749        120 FDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDE  159 (288)
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCcc
Confidence            34678999999999999999999988997 7999998853

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=95.28  E-value=0.053  Score=60.00  Aligned_cols=90  Identities=20%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhhcCcee-c---C---HHHHhccCcEEEEcCCCCCCcC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASMEGYEV-T---T---MEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~~G~~v-~---~---Leell~~aDiIi~atgt~~lI~  418 (718)
                      .|++|.|.|.|.||..+++.++.+|++|++++.++.+.. .+...|... .   +   +.+.....|+++.++|....+ 
T Consensus       178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa~~~i~~~~~~~v~~~~~~~D~vid~~G~~~~~-  256 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGADSFLVTTDSQKMKEAVGTMDFIIDTVSAEHAL-  256 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCCcEEEcCcCHHHHHHhhCCCcEEEECCCcHHHH-
Confidence            689999999999999999999999999998876543322 222334421 1   1   222333479999888765333 


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...++.++++..++.+|..
T Consensus       257 ~~~~~~l~~~G~iv~vG~~  275 (375)
T PLN02178        257 LPLFSLLKVSGKLVALGLP  275 (375)
T ss_pred             HHHHHhhcCCCEEEEEccC
Confidence            3567888999999998864

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=95.22  E-value=0.05  Score=58.04  Aligned_cols=87  Identities=15%  Similarity=0.145  Sum_probs=53.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhC---CCE-EEEEecCCccHHHHhhcCce-ecCHHHH-hccCcEEEEcCCCCCCcCHHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF---GSR-VIVTEIDPINALQASMEGYE-VTTMEEA-AKEGGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f---Ga~-Viv~d~dp~~al~a~~~G~~-v~~Leel-l~~aDiIi~atgt~~lI~~e~l  422 (718)
                      ++|||||||.||+.+++.+..-   +.+ +.++++++.+..... .... +.+++++ ....|+|+.|.+.. .+.+-..
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~-~~~~~~~~l~~ll~~~~DlVVE~A~~~-av~e~~~   80 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALA-GRVALLDGLPGLLAWRPDLVVEAAGQQ-AIAEHAE   80 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhh-ccCcccCCHHHHhhcCCCEEEECCCHH-HHHHHHH
Confidence            5899999999999999988653   244 345666664332222 2233 3469997 57899999987653 2222233


Q ss_pred             hcCCC--CeEEEEcCCC
Q psy7896         423 LQMRD--DAIVCNIGHF  437 (718)
Q Consensus       423 ~~MK~--gAiLIN~GRg  437 (718)
                      ..++.  +.++..+|-.
T Consensus        81 ~iL~~g~dlvv~SvGAL   97 (267)
T PRK13301         81 GCLTAGLDMIICSAGAL   97 (267)
T ss_pred             HHHhcCCCEEEEChhHh
Confidence            44443  3444554443

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=95.22  E-value=0.24  Score=53.84  Aligned_cols=183  Identities=22%  Similarity=0.227  Sum_probs=107.4

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEee-cCchhh
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTE-IDPINA  305 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D-~dp~r~  305 (718)
                      .|+--|++++++..-+      .-|||+.|-+.-.   .--|..+.|+.-...|-.-. ++.--++ +|++.- .....-
T Consensus        70 rLG~~Vv~~~~~~sSs------~KGEtL~DT~~tl---~ayg~D~iViRH~~egaa~~-~a~~~~~~pvINaGDG~~qHP  139 (316)
T COG0540          70 RLGADVVNFSDSESSS------KKGETLADTIRTL---SAYGVDAIVIRHPEEGAARL-LAEFSGVNPVINAGDGSHQHP  139 (316)
T ss_pred             HcCCcEEeecCCcccc------cccccHHHHHHHH---HhhCCCEEEEeCccccHHHH-HHHhcCCCceEECCCCCCCCc
Confidence            4666778887765443      1358887766642   22345667777666554321 2222244 354421 122222


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEe---cChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         306 LQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAG---YGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       306 v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG---~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|+..+-|.+-+                       ..|. +.|++|+|+|   +|++.+..++.|..||++|.++-+...
T Consensus       140 TQ~LLDl~TI~~-----------------------~~G~-~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L  195 (316)
T COG0540         140 TQALLDLYTIRE-----------------------EFGR-LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETL  195 (316)
T ss_pred             cHHHHHHHHHHH-----------------------HhCC-cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHh
Confidence            334444333211                       1233 8999999999   899999999999999999999854322


Q ss_pred             cH----HHHh-hcC-c-eecC-HHHHhccCcEEEEc-------CCC--------CCCcCHHHHhc-CCCCeEEEEcCC--
Q psy7896         383 NA----LQAS-MEG-Y-EVTT-MEEAAKEGGIFVTT-------TGC--------KDIIRGEHFLQ-MRDDAIVCNIGH--  436 (718)
Q Consensus       383 ~a----l~a~-~~G-~-~v~~-Leell~~aDiIi~a-------tgt--------~~lI~~e~l~~-MK~gAiLIN~GR--  436 (718)
                      ..    .+.. ..| . ...+ .+|+++++||+..+       .+.        .+.+.....+. +|+++++.-.+-  
T Consensus       196 ~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~lRvQ~ER~~~~~~~s~~~~y~~~~~~~~~~~~k~~~ivmHP~Pvn  275 (316)
T COG0540         196 LPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYMLRVQKERFNDPEEYSKVKEYYKLYGLTLERLAKPDAIVMHPLPVN  275 (316)
T ss_pred             CCchhHHHHHhhcCceEEEecchhhhhccCCEEEeehhhHhhcCCccchHHHHHHHHHHHHHHHhhcCCCcEEECCCCcc
Confidence            22    1111 122 1 2344 45599999999864       111        12244455666 999999998886  


Q ss_pred             CCccccHH
Q psy7896         437 FDCEIQVS  444 (718)
Q Consensus       437 gd~Eid~~  444 (718)
                      -++||+.+
T Consensus       276 R~~EI~~~  283 (316)
T COG0540         276 RVVEIASE  283 (316)
T ss_pred             CCCcCchh
Confidence            34577754

>KOG0024|consensus

Probab=95.21  E-value=0.041  Score=59.97  Aligned_cols=101  Identities=23%  Similarity=0.247  Sum_probs=74.2

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceec-------CHHH---Hh------ccCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVT-------TMEE---AA------KEGG  405 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~-------~Lee---ll------~~aD  405 (718)
                      +.--.|.+|.|+|.|+||......|+++|| +|+++|..+.+...|...|+++.       +.++   .+      ...|
T Consensus       165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d  244 (354)
T KOG0024|consen  165 AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPD  244 (354)
T ss_pred             cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCC
Confidence            344579999999999999999999999999 79999988877655666777542       1222   22      2479


Q ss_pred             EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHH
Q psy7896         406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVS  444 (718)
Q Consensus       406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~  444 (718)
                      +.+.|+|-.-.++. .+...|.+..++-+|-+...+.++
T Consensus       245 ~~~dCsG~~~~~~a-ai~a~r~gGt~vlvg~g~~~~~fp  282 (354)
T KOG0024|consen  245 VTFDCSGAEVTIRA-AIKATRSGGTVVLVGMGAEEIQFP  282 (354)
T ss_pred             eEEEccCchHHHHH-HHHHhccCCEEEEeccCCCccccC
Confidence            99999987655553 567778887777777776555544

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=95.21  E-value=0.057  Score=62.35  Aligned_cols=35  Identities=31%  Similarity=0.292  Sum_probs=31.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .|++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~  385 (515)
T TIGR03140       351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD  385 (515)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCC
Confidence            57999999999999999999999999999987544

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=95.20  E-value=0.04  Score=59.04  Aligned_cols=91  Identities=20%  Similarity=0.215  Sum_probs=64.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ecC-----H---HHHhc--cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VTT-----M---EEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~~-----L---eell~--~aDiIi~atgt  413 (718)
                      ..|.+|.|+|.|.||..+++.++.+|++ |++++.++.+...+...|.. +.+     .   .++..  ..|+++.+++.
T Consensus       162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~d~vid~~g~  241 (339)
T cd08239         162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADFVINSGQDDVQEIRELTSGAGADVAIECSGN  241 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCCcchHHHHHHHhCCCCCCEEEECCCC
Confidence            3589999999999999999999999999 99988766543333333432 111     1   12222  47999888876


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+ ...++.++++..++..|..
T Consensus       242 ~~~~-~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         242 TAAR-RLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             HHHH-HHHHHHhhcCCEEEEEcCC
Confidence            5332 3567889999999988864

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.17  E-value=0.58  Score=51.12  Aligned_cols=152  Identities=13%  Similarity=-0.011  Sum_probs=94.3

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc-cccC
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI-MLAG  348 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~-eL~G  348 (718)
                      -.+.|+....-+ .+..+++.-.++|++.-.+...=.|+.++-|.+-+                       +.|. .+.|
T Consensus        98 ~D~iv~R~~~~~-~~~~~a~~~~vPVINag~~~~HPtQaL~Dl~Ti~e-----------------------~~g~~~l~g  153 (311)
T PRK14804         98 VSVIMARLKKHE-DLLVMKNGSQVPVINGCDNMFHPCQSLADIMTIAL-----------------------DSPEIPLNQ  153 (311)
T ss_pred             CCEEEEeCCChH-HHHHHHHHCCCCEEECCCCCCChHHHHHHHHHHHH-----------------------HhCCCCCCC
Confidence            344455443333 34445555667888875555555667666655421                       2243 5899


Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc-H-----HH-HhhcC-ce-ecCHHHHhccCcEEEEcC----CC-
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN-A-----LQ-ASMEG-YE-VTTMEEAAKEGGIFVTTT----GC-  413 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~-a-----l~-a~~~G-~~-v~~Leell~~aDiIi~at----gt-  413 (718)
                      ++|++||- +++.+..+..+..||++|.++-+.... .     .+ +...| +. ..+++++++.+|+|.+-+    +. 
T Consensus       154 ~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~w~~~~~~  233 (311)
T PRK14804        154 KQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDTWLDMEFF  233 (311)
T ss_pred             CEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeeeeEECccc
Confidence            99999998 689999999999999999998543221 1     01 11123 33 368999999999999831    11 


Q ss_pred             -----------------CCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHh
Q psy7896         414 -----------------KDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLD  447 (718)
Q Consensus       414 -----------------~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~  447 (718)
                                       ..-|+.+.++  ++++++.-++-.  +.||+.+-+.
T Consensus       234 ~~~~~~~~~~~r~~~~~~y~v~~elm~--~~~~~vmH~lP~~Rg~Ei~~~V~d  284 (311)
T PRK14804        234 NDPSYADKKKQRMELMMPYQINSSLME--KTNAKVMHDMPIHAGYEITREVVL  284 (311)
T ss_pred             CccchHHHHHHHHHhccCCeECHHHHh--CCCCeEeCCCCCCCCceeCHHHhC
Confidence                             2246666555  346777777653  3567655443

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=95.17  E-value=0.047  Score=59.74  Aligned_cols=90  Identities=16%  Similarity=0.185  Sum_probs=64.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----CHHHHhc-----cCcEEEEcCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----TMEEAAK-----EGGIFVTTTGCK  414 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~Leell~-----~aDiIi~atgt~  414 (718)
                      .|++|.|.|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.     ++.+.++     ..|+++.++|..
T Consensus       191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~i~~~~~~~~~~i~~~~~~g~d~vid~~G~~  270 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATATVNAGDPNAVEQVRELTGGGVDYAFEMAGSV  270 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCceEeCCCchhHHHHHHHHhCCCCCEEEECCCCh
Confidence            58999999999999999999999999 699888777654333334432 11     1112111     369999888764


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..+. ..++.++++..++.+|..
T Consensus       271 ~~~~-~~~~~l~~~G~iv~~G~~  292 (371)
T cd08281         271 PALE-TAYEITRRGGTTVTAGLP  292 (371)
T ss_pred             HHHH-HHHHHHhcCCEEEEEccC
Confidence            3333 467889999999988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=95.17  E-value=0.046  Score=60.64  Aligned_cols=35  Identities=26%  Similarity=0.346  Sum_probs=32.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..|+.+|.+|++++..+
T Consensus       143 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  177 (396)
T PRK09754        143 PERSVVIVGAGTIGLELAASATQRRCKVTVIELAA  177 (396)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            47999999999999999999999999999987654

>PRK07574 formate dehydrogenase; Provisional

Probab=95.17  E-value=0.043  Score=61.50  Aligned_cols=190  Identities=14%  Similarity=0.109  Sum_probs=106.0

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .+.|+++.|+|+|.+|+.+|+.|+.+|++|.++|..+.........+...                              
T Consensus       189 ~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~------------------------------  238 (385)
T PRK07574        189 DLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTY------------------------------  238 (385)
T ss_pred             ecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCcee------------------------------
Confidence            47899999999999999999999999999999986542110000001000                              


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHH-hc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHF-LQ  424 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l-~~  424 (718)
                                +    ..+...++  .++|++.. -|....-..+-+   ..+-..++.. .+++.++.-.+++.+.+ +.
T Consensus       239 ----------~----~~l~ell~--~aDvV~l~-lPlt~~T~~li~---~~~l~~mk~g-a~lIN~aRG~iVDe~AL~~A  297 (385)
T PRK07574        239 ----------H----VSFDSLVS--VCDVVTIH-CPLHPETEHLFD---ADVLSRMKRG-SYLVNTARGKIVDRDAVVRA  297 (385)
T ss_pred             ----------c----CCHHHHhh--cCCEEEEc-CCCCHHHHHHhC---HHHHhcCCCC-cEEEECCCCchhhHHHHHHH
Confidence                      0    00112332  35555542 222111000000   0111223433 44455566568888886 66


Q ss_pred             CCCCeEEEEcC-CCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccccc-c
Q psy7896         425 MRDDAIVCNIG-HFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLS-T  502 (718)
Q Consensus       425 MK~gAiLIN~G-Rgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y~i-~  502 (718)
                      ++.|-+---.. -+..|..    ...  ..+...|||..++|.+..+.++..+. ...+..|+..+..+.+....|.| +
T Consensus       298 L~sG~i~GAaLDV~~~EPl----p~d--~pL~~~pNvilTPHiag~T~e~~~~~-~~~~~~ni~~~~~G~~~~~~~~~~~  370 (385)
T PRK07574        298 LESGHLAGYAGDVWFPQPA----PAD--HPWRTMPRNGMTPHISGTTLSAQARY-AAGTREILECFFEGRPIRDEYLIVD  370 (385)
T ss_pred             HHhCCccEEEEecCCCCCC----CCC--ChHHhCCCeEECCccccCcHHHHHHH-HHHHHHHHHHHHcCCCCCCCceEec
Confidence            77765432110 1112211    110  11223589999999999998887664 33455788888888777777765 4


Q ss_pred             chhhcccchhh
Q psy7896         503 DIKLAEWGRKT  513 (718)
Q Consensus       503 D~~La~~G~~k  513 (718)
                      .-.|+-.|.++
T Consensus       371 ~~~~~~~~~~~  381 (385)
T PRK07574        371 GGRLAGTGAHS  381 (385)
T ss_pred             CCcccCccccc
Confidence            56676666544

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=95.17  E-value=0.1  Score=57.11  Aligned_cols=66  Identities=20%  Similarity=0.283  Sum_probs=46.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHH-HH-------hhcC--cee---cCHHHHhccCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINAL-QA-------SMEG--YEV---TTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al-~a-------~~~G--~~v---~~Leell~~aDiIi~at  411 (718)
                      ++.++|+|||.|.+|..+|..+...| ++|.++|+++..+. ++       ...+  ..+   .+. +.++.||+|+.+.
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta   82 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA   82 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence            34579999999999999999988777 48999999886421 01       0111  122   345 5779999999864


Q ss_pred             C
Q psy7896         412 G  412 (718)
Q Consensus       412 g  412 (718)
                      +
T Consensus        83 g   83 (321)
T PTZ00082         83 G   83 (321)
T ss_pred             C
Confidence            3

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.15  E-value=0.052  Score=60.94  Aligned_cols=66  Identities=26%  Similarity=0.235  Sum_probs=45.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH--HhhcCceecCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYEVTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~--a~~~G~~v~~Leell~~aDiIi~atgt  413 (718)
                      ..++|.|||.|.+|+.+|+.|+..|.+|+++|.++.....  ...+.+ ....+.+.+++|+|+.+++.
T Consensus         2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~-~~~~~~~~~~~dlvV~s~gi   69 (418)
T PRK00683          2 GLQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERY-LENAEEFPEQVDLVVRSPGI   69 (418)
T ss_pred             CCCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhh-cCCcHHHhcCCCEEEECCCC
Confidence            3478999999999999999999999999999976642111  011111 11233445779999987654

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=95.15  E-value=0.052  Score=59.03  Aligned_cols=91  Identities=20%  Similarity=0.241  Sum_probs=65.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CHHH----Hhc--cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TMEE----AAK--EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Lee----ll~--~aDiIi~atg  412 (718)
                      -.|++|.|.|.|.||..+++.++.+|++ |++++.++.+...+...|.. +.     +..+    +..  ..|+++-++|
T Consensus       175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~i~~~~~~~g~d~vid~~g  254 (358)
T TIGR03451       175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATHTVNSSGTDPVEAIRALTGGFGADVVIDAVG  254 (358)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcCCCcCHHHHHHHHhCCCCCCEEEECCC
Confidence            3589999999999999999999999995 88887776554333334432 11     1211    222  4799999888


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....++ ..+..++++..++.+|..
T Consensus       255 ~~~~~~-~~~~~~~~~G~iv~~G~~  278 (358)
T TIGR03451       255 RPETYK-QAFYARDLAGTVVLVGVP  278 (358)
T ss_pred             CHHHHH-HHHHHhccCCEEEEECCC
Confidence            654443 467888999999999864

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.15  E-value=0.081  Score=57.08  Aligned_cols=88  Identities=15%  Similarity=-0.023  Sum_probs=58.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------------cCHHHHhccCcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------------~~Leell~~aDiIi~atgt  413 (718)
                      -++|+|||.|.||..+|.+|...|.+|+++.+++..+..  ..|...              .+..+..+.+|+|++++..
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~   82 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDYEAVR--ENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKT   82 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHH--hCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecC
Confidence            368999999999999999999999999999887643321  223211              1122345678999998766


Q ss_pred             CCCcC--HHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIR--GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~--~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..+..  ...-..++++..++..--|
T Consensus        83 ~~~~~~~~~l~~~~~~~~~iv~lqNG  108 (313)
T PRK06249         83 TANALLAPLIPQVAAPDAKVLLLQNG  108 (313)
T ss_pred             CChHhHHHHHhhhcCCCCEEEEecCC
Confidence            55432  1122345667777766443

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.15  E-value=0.053  Score=60.98  Aligned_cols=67  Identities=25%  Similarity=0.282  Sum_probs=47.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--H-H-HhhcCceec---CHHHHhcc-CcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--L-Q-ASMEGYEVT---TMEEAAKE-GGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l-~-a~~~G~~v~---~Leell~~-aDiIi~at  411 (718)
                      ++.||++.|+|.|.+|+++|+.|...|++|++.|.++...  . . ....|..+.   ...+++.. .|+||..+
T Consensus         2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~   76 (447)
T PRK02472          2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP   76 (447)
T ss_pred             CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence            3679999999999999999999999999999998754321  1 1 122355432   22344444 89888764

>PRK06116 glutathione reductase; Validated

Probab=95.13  E-value=0.11  Score=58.46  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=31.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  200 (450)
T PRK06116        167 PKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGD  200 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            6899999999999999999999999999987654

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.12  E-value=0.053  Score=62.02  Aligned_cols=68  Identities=22%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-HhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-ASMEGYEVT---TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-a~~~G~~v~---~Leell~~aDiIi~atg  412 (718)
                      .+.+|+|.|+|+|.+|+++|+.|...|++|+++|.++....+ ....|+.+.   ...+.+.++|+||..++
T Consensus        12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Spg   83 (473)
T PRK00141         12 QELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSPG   83 (473)
T ss_pred             cccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCCC
Confidence            578899999999999999999999999999999976543222 122365542   12345678899987643

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=95.10  E-value=0.029  Score=61.75  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=34.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|++++|.|||.|.+|..+|+.|...|. +++++|.|.
T Consensus        21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~   58 (338)
T PRK12475         21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY   58 (338)
T ss_pred             hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence            5789999999999999999999999998 888898875

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.09  E-value=0.054  Score=61.55  Aligned_cols=67  Identities=19%  Similarity=0.182  Sum_probs=48.8

Q ss_pred             ccCcEEEEEecChhHHH-HHHHHHhCCCEEEEEecCCccHHHH-hhcCceec--CHHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKG-CAQSLRLFGSRVIVTEIDPINALQA-SMEGYEVT--TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~-vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v~--~Leell~~aDiIi~atg  412 (718)
                      .++|+|.|+|.|..|+. +|+.|+..|++|+++|.++...... ...|+.+.  .-.+.+..+|+||..++
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spg   75 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSA   75 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCC
Confidence            46789999999999999 7999999999999999766432221 12355442  12345667999987643

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.06  E-value=0.039  Score=61.91  Aligned_cols=65  Identities=20%  Similarity=0.251  Sum_probs=49.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCcee--------cCHHHH-hccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYEV--------TTMEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~v--------~~Leel-l~~aDiIi~atgt  413 (718)
                      ++|.|+|+|++|+.+++.|...|.+|+++|.++........ .|+.+        ..++++ ++++|.++.++++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~   75 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDS   75 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCC
Confidence            47999999999999999999999999999988865333222 23322        235555 7789999887665

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=95.04  E-value=0.11  Score=58.42  Aligned_cols=105  Identities=18%  Similarity=0.189  Sum_probs=80.7

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCCcc-------------HHHHh-hcCceecCHHHHhcc
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDPIN-------------ALQAS-MEGYEVTTMEEAAKE  403 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp~~-------------al~a~-~~G~~v~~Leell~~  403 (718)
                      ..|..|+..+|.+.|.|.-|-++++.+++.|+   +|+++|+.-..             ...+. ..+.. .. ++.+..
T Consensus       192 ~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~-~~-~~~~~~  269 (432)
T COG0281         192 LTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGER-TL-DLALAG  269 (432)
T ss_pred             HhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhccc-cc-cccccC
Confidence            45788999999999999999999999999999   58888754211             11110 11111 11 557889


Q ss_pred             CcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         404 GGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       404 aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +|+++-+++. ++++++.++.|.+..++.-.+.-..|+.++...+
T Consensus       270 adv~iG~S~~-G~~t~e~V~~Ma~~PiIfalaNP~pEi~Pe~a~~  313 (432)
T COG0281         270 ADVLIGVSGV-GAFTEEMVKEMAKHPIIFALANPTPEITPEDAKE  313 (432)
T ss_pred             CCEEEEcCCC-CCcCHHHHHHhccCCEEeecCCCCccCCHHHHhh
Confidence            9999998888 9999999999999999998888777888776554

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.00  E-value=0.046  Score=62.45  Aligned_cols=67  Identities=16%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH---HhhcCcee---cCHHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ---ASMEGYEV---TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~---a~~~G~~v---~~Leell~~aDiIi~atg  412 (718)
                      +.||+|+|+|+|+-|+++|+.|+..|++|+++|.++.....   ....+...   ..-++.+.+.|+||..++
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~vV~Spg   78 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALADAALLVETEASAQRLAAFDVVVKSPG   78 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhhcCEEEeCCCChHHccCCCEEEECCC
Confidence            46899999999999999999999999999999965432111   11112211   112355678999998644

>KOG4230|consensus

Probab=94.98  E-value=0.054  Score=62.42  Aligned_cols=78  Identities=23%  Similarity=0.394  Sum_probs=67.8

Q ss_pred             cccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896         343 DIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH  421 (718)
Q Consensus       343 g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~  421 (718)
                      +..+.||+..|+|--+| |+.++.+|+...+.|+++...             ..++.|.+.++|+++.+.|-++++..  
T Consensus       157 ~v~v~Gk~aVVlGRS~IVG~Pia~LL~~~NaTVTiCHSK-------------T~~lae~v~~ADIvIvAiG~PefVKg--  221 (935)
T KOG4230|consen  157 GVFVAGKNAVVLGRSKIVGSPIAALLLWANATVTICHSK-------------TRNLAEKVSRADIVIVAIGQPEFVKG--  221 (935)
T ss_pred             CCccccceeEEEecccccCChHHHHHHhcCceEEEecCC-------------CccHHHHhccCCEEEEEcCCcceeec--
Confidence            56789999999999985 999999999999999998532             23677888899999999999888876  


Q ss_pred             HhcCCCCeEEEEcCC
Q psy7896         422 FLQMRDDAIVCNIGH  436 (718)
Q Consensus       422 l~~MK~gAiLIN~GR  436 (718)
                       +.+|+|+++|++|-
T Consensus       222 -dWiKpGavVIDvGI  235 (935)
T KOG4230|consen  222 -DWIKPGAVVIDVGI  235 (935)
T ss_pred             -ccccCCcEEEEccc
Confidence             46799999999986

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=94.96  E-value=0.13  Score=55.39  Aligned_cols=68  Identities=21%  Similarity=0.302  Sum_probs=47.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh---h-cCc--eecCHHHH--hccCcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS---M-EGY--EVTTMEEA--AKEGGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~---~-~G~--~v~~Leel--l~~aDiIi~atg  412 (718)
                      ...|+++.|+|.|-.+++++..|...|+ +|+++++.+.++.+..   . .+.  ....+.++  ..++|+||.+|+
T Consensus       123 ~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp  199 (283)
T COG0169         123 DVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATP  199 (283)
T ss_pred             ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCC
Confidence            4579999999999999999999999996 7999998876643321   1 110  12222222  125888888764

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=94.93  E-value=0.14  Score=57.59  Aligned_cols=35  Identities=26%  Similarity=0.286  Sum_probs=32.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~  191 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAAS  191 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            46899999999999999999999999999998654

>PRK10262 thioredoxin reductase; Provisional

Probab=94.88  E-value=0.076  Score=56.95  Aligned_cols=36  Identities=19%  Similarity=0.113  Sum_probs=32.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..|++|.|||.|.+|..+|..+..+|.+|+++++.+
T Consensus       144 ~~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~  179 (321)
T PRK10262        144 YRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  179 (321)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEECC
Confidence            468999999999999999999999999999987654

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=94.84  E-value=0.076  Score=58.80  Aligned_cols=78  Identities=18%  Similarity=0.192  Sum_probs=53.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---ecC---HHHHhccCcEEEEcCCCCCCcCHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---VTT---MEEAAKEGGIFVTTTGCKDIIRGEH  421 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---v~~---Leell~~aDiIi~atgt~~lI~~e~  421 (718)
                      .++|||||.|..|+.+++.++.+|.+|+++|.+|........+.+.   +.+   +.++++.+|+|+.-..   -++.+.
T Consensus         2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~e~e---~i~~~~   78 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITYEFE---NVPAEA   78 (372)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEeCcC---CCCHHH
Confidence            3789999999999999999999999999999876542221122221   122   5677889998854322   345566


Q ss_pred             HhcCCCC
Q psy7896         422 FLQMRDD  428 (718)
Q Consensus       422 l~~MK~g  428 (718)
                      ++.+...
T Consensus        79 l~~l~~~   85 (372)
T PRK06019         79 LDALAAR   85 (372)
T ss_pred             HHHHhcC
Confidence            6555443

>KOG0399|consensus

Probab=94.83  E-value=0.051  Score=66.70  Aligned_cols=124  Identities=27%  Similarity=0.324  Sum_probs=79.9

Q ss_pred             HHHHhhhc-ccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--------hhhhHHHHHHHHHH
Q psy7896         256 VDGLKRAT-DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--------YELDEEVAALHLEH  326 (718)
Q Consensus       256 ~~~i~r~t-~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--------f~L~r~i~~~~l~~  326 (718)
                      .+||+.+. .....|++|+|||.||.|+.+|+.|.+.|+.|+||+...... .-++-|        +-+.|++..+  ..
T Consensus      1771 ~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~g-gll~ygipnmkldk~vv~rrv~ll--~~ 1847 (2142)
T KOG0399|consen 1771 EEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVG-GLLMYGIPNMKLDKFVVQRRVDLL--EQ 1847 (2142)
T ss_pred             HhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcC-ceeeecCCccchhHHHHHHHHHHH--Hh
Confidence            45666433 345799999999999999999999999999999999654321 111112        2222333222  22


Q ss_pred             hcccccccc---------hhh---------------------------------------h-------hhhcccccCcEE
Q psy7896         327 LGVKLTKLT---------EDQ---------------------------------------A-------KYLDIMLAGKVA  351 (718)
Q Consensus       327 lgv~~~~~~---------~~~---------------------------------------~-------~~~g~eL~GktV  351 (718)
                      -|+++-...         ..+                                       +       .......+||+|
T Consensus      1848 egi~f~tn~eigk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkv 1927 (2142)
T KOG0399|consen 1848 EGIRFVTNTEIGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKV 1927 (2142)
T ss_pred             hCceEEeeccccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeE
Confidence            233331100         000                                       0       011345689999


Q ss_pred             EEEecChhHHHHHHHHHhCCCE-EEEEecCCc
Q psy7896         352 VVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPI  382 (718)
Q Consensus       352 GIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~  382 (718)
                      .|||.|..|..+.-.-.+.||+ |.-++.-|.
T Consensus      1928 ivigggdtg~dcigtsvrhg~~sv~n~ellp~ 1959 (2142)
T KOG0399|consen 1928 IVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQ 1959 (2142)
T ss_pred             EEECCCCccccccccchhhccceecceeecCC
Confidence            9999999999999988999995 555665444

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=94.81  E-value=0.054  Score=60.67  Aligned_cols=87  Identities=13%  Similarity=0.116  Sum_probs=61.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhhcC---c--------eecCHHHHhccCcEEEEcCCCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASMEG---Y--------EVTTMEEAAKEGGIFVTTTGCKDI  416 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~~G---~--------~v~~Leell~~aDiIi~atgt~~l  416 (718)
                      ++|.|||.|.||+.+|..|..-| .+|++.++.+.+..++...+   .        .+..+.+++++.|+++.+.+-.  
T Consensus         2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~--   79 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPF--   79 (389)
T ss_pred             CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCch--
Confidence            68999999999999999998888 89999999876654443222   1        2234678899999998763321  


Q ss_pred             cCHHHH-hcCCCCeEEEEcCCC
Q psy7896         417 IRGEHF-LQMRDDAIVCNIGHF  437 (718)
Q Consensus       417 I~~e~l-~~MK~gAiLIN~GRg  437 (718)
                      ++...+ +.++.|.-.++++-.
T Consensus        80 ~~~~i~ka~i~~gv~yvDts~~  101 (389)
T COG1748          80 VDLTILKACIKTGVDYVDTSYY  101 (389)
T ss_pred             hhHHHHHHHHHhCCCEEEcccC
Confidence            122333 455677777777654

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.80  E-value=0.04  Score=59.64  Aligned_cols=64  Identities=27%  Similarity=0.360  Sum_probs=45.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHH-HH--hhcCce--------ecCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QA--SMEGYE--------VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a--~~~G~~--------v~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|.+|..+|..+...|  .+|.++|+++.+.. ++  ..+...        ..+. +.++.||+++++.+.
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~   77 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGA   77 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCC
Confidence            36999999999999999998888  58999998875432 11  111111        1233 568999999997553

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=94.79  E-value=0.023  Score=54.65  Aligned_cols=65  Identities=25%  Similarity=0.260  Sum_probs=44.2

Q ss_pred             cEEEEEec-ChhHHHHHHHHH--hCCCEEEEEecCCccHHH-H-----h--hcCc--e-ecCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLR--LFGSRVIVTEIDPINALQ-A-----S--MEGY--E-VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~--~fGa~Viv~d~dp~~al~-a-----~--~~G~--~-v~~Leell~~aDiIi~atgt  413 (718)
                      .+|+|||. |+||+.+|-.+.  +++.++.++|+++.++.. +     .  ..+.  . .....+.+++||+|+.+.|.
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~   79 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV   79 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence            37999999 999999999885  566689999988543211 0     0  0111  1 12456778888988887654

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=94.78  E-value=0.088  Score=59.89  Aligned_cols=34  Identities=35%  Similarity=0.390  Sum_probs=31.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~  213 (472)
T PRK05976        180 PKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD  213 (472)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            6899999999999999999999999999998655

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=94.74  E-value=0.027  Score=53.28  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=31.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCcc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPIN  383 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~  383 (718)
                      .++|.|+|.|.+|..+|+.|...|+ +++++|.|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~   38 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVE   38 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCccee
Confidence            5799999999999999999999999 79999877653

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=94.63  E-value=0.061  Score=57.50  Aligned_cols=38  Identities=26%  Similarity=0.450  Sum_probs=34.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      .|++++|.|+|.|.+|..+|..|...|. +++++|.|..
T Consensus        27 kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V   65 (268)
T PRK15116         27 LFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDV   65 (268)
T ss_pred             HhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEe
Confidence            4789999999999999999999999994 8999987754

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.1  Score=58.95  Aligned_cols=68  Identities=19%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-HHHhh---cCceec--C-HHHHhccCcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-LQASM---EGYEVT--T-MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-l~a~~---~G~~v~--~-Leell~~aDiIi~atg  412 (718)
                      ++.+|++.|+|.|.+|+.+|+.|...|++|+++|..+... .....   .|+.+.  . -++.+...|+||..++
T Consensus         2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spg   76 (445)
T PRK04308          2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPG   76 (445)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCC
Confidence            3578999999999999999999999999999998766432 11111   355431  1 2344568999998644

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.61  E-value=0.15  Score=57.38  Aligned_cols=67  Identities=22%  Similarity=0.258  Sum_probs=48.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-HHHhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-LQASMEGYEVT---TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-l~a~~~G~~v~---~Leell~~aDiIi~atg  412 (718)
                      +.+|+|.|+|.|..|+..++.|+..|.+|++.|..+... ......|+.+.   .-.+.++..|+||..++
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~vv~spg   74 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLIVASPG   74 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEEEECCC
Confidence            568999999999999999999999999999999765432 12222355442   12245677899887643

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=94.59  E-value=0.13  Score=56.39  Aligned_cols=195  Identities=20%  Similarity=0.245  Sum_probs=111.6

Q ss_pred             hcCCccceEEEecCCcccccccccccchhhHH----HHHh--------------hhcccccCCcEEEEEecCCCChhHHH
Q psy7896         225 KENKLGVPAINVNDSVTKSKFDNLYGCRESLV----DGLK--------------RATDIMLAGKVAVVAGYGDVGKGCAQ  286 (718)
Q Consensus       225 ~~g~l~~Pv~~v~ds~~K~~fd~~~G~~es~~----~~i~--------------r~t~~~~~Gk~vvViGyG~vG~~~A~  286 (718)
                      ...+.++-|.||.+..+.+..|...+.-=++.    ++..              ...+..+.||++.|+|.|.||+.+|+
T Consensus        84 aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~avA~  163 (324)
T COG1052          84 AAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVAR  163 (324)
T ss_pred             HHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHHHHH
Confidence            34567889999999999888887766221111    1111              01234578999999999999999999


Q ss_pred             HHHhcCCeEEEeecCchhhhhhhh-hhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHH
Q psy7896         287 SLRLFGSRVIVTEIDPINALQASM-EGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQ  365 (718)
Q Consensus       287 aLra~Gv~VtV~D~dp~r~v~Ava-eGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~  365 (718)
                      .++.+|.+|..++..+........ ..|..                                               +-.
T Consensus       164 r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~-----------------------------------------------l~e  196 (324)
T COG1052         164 RLKGFGMKVLYYDRSPNPEAEKELGARYVD-----------------------------------------------LDE  196 (324)
T ss_pred             HHhcCCCEEEEECCCCChHHHhhcCceecc-----------------------------------------------HHH
Confidence            999999999999987752211110 00100                                               113


Q ss_pred             HHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhc-cCcEEEEcCCCCCCcCHHHH-hcCCCCeEEEEc-CCCCcccc
Q psy7896         366 SLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK-EGGIFVTTTGCKDIIRGEHF-LQMRDDAIVCNI-GHFDCEIQ  442 (718)
Q Consensus       366 ~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~-~aDiIi~atgt~~lI~~e~l-~~MK~gAiLIN~-GRgd~Eid  442 (718)
                      .++.  +.++... -|....     -....+-+++.+ ....++..++--.+||++.+ +.++.|-+---. =.+..|..
T Consensus       197 ll~~--sDii~l~-~Plt~~-----T~hLin~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~  268 (324)
T COG1052         197 LLAE--SDIISLH-CPLTPE-----TRHLINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPA  268 (324)
T ss_pred             HHHh--CCEEEEe-CCCChH-----HhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCC
Confidence            3333  2233321 232111     112233344432 23455566776678998775 667776553211 01222332


Q ss_pred             HHHHhccccceeeecCCcccCccccchhhHHHHhh
Q psy7896         443 VSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLAT  477 (718)
Q Consensus       443 ~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~  477 (718)
                      .   .+..+-.....|+|..+||.+..+.|+..++
T Consensus       269 ~---~d~~l~~l~~~~~vvltPHia~at~ea~~~m  300 (324)
T COG1052         269 L---FDHPLLRLDNFPNVVLTPHIASATEEARKAM  300 (324)
T ss_pred             C---CChhHhhccCCCCEEEccccccccHHHHHHH
Confidence            1   0111112233477889999999998888775

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=94.58  E-value=0.11  Score=58.93  Aligned_cols=34  Identities=24%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~  203 (458)
T PRK06912        170 PSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAP  203 (458)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            4789999999999999999999999999987654

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=94.58  E-value=0.1  Score=55.75  Aligned_cols=90  Identities=19%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e------cCHHHHhc-----cCcEEEEcCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V------TTMEEAAK-----EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v------~~Leell~-----~aDiIi~atg  412 (718)
                      -.|.+|.|.| .|.||+.+++.++.+|++|+++...+.+...+...|.. +      .++.+.++     ..|+++-+.|
T Consensus       137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~gvdvv~d~~G  216 (325)
T TIGR02825       137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGFDVAFNYKTVKSLEETLKKASPDGYDCYFDNVG  216 (325)
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeccccccHHHHHHHhCCCCeEEEEECCC
Confidence            3689999999 59999999999999999999887665443222233432 1      12333322     3688888877


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ... + ...++.++++..+++.|..
T Consensus       217 ~~~-~-~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       217 GEF-S-NTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             HHH-H-HHHHHHhCcCcEEEEecch
Confidence            642 3 5678999999999998864

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>PRK04148 hypothetical protein; Provisional

Probab=94.56  E-value=0.068  Score=51.55  Aligned_cols=40  Identities=30%  Similarity=0.262  Sum_probs=35.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  387 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a  387 (718)
                      +++++.+||+| -|..+|+.|...|.+|+++|.+|.....+
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a   55 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKA   55 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence            57899999999 99999999999999999999998743333

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=94.55  E-value=0.18  Score=57.02  Aligned_cols=34  Identities=32%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~  205 (462)
T PRK06416        172 PKSLVVIGGGYIGVEFASAYASLGAEVTIVEALP  205 (462)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            5899999999999999999999999999998654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.54  E-value=0.16  Score=55.82  Aligned_cols=35  Identities=23%  Similarity=0.264  Sum_probs=32.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..|...|.+|+++++.+
T Consensus       140 ~~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~  174 (377)
T PRK04965        140 DAQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAA  174 (377)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCC
Confidence            57899999999999999999999999999998655

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.54  E-value=0.085  Score=60.59  Aligned_cols=67  Identities=21%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc-H---HHHhhcCceec---CHHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN-A---LQASMEGYEVT---TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~-a---l~a~~~G~~v~---~Leell~~aDiIi~atg  412 (718)
                      +.+++|.|+|.|.+|+.+|+.|+..|.+|.++|..+.. .   ++....|..+.   ...+.+..+|+|+..++
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~sp~   78 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALSPG   78 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEECCC
Confidence            57899999999999999999999999999999865532 1   22221143331   12455678999988643

>PLN02827 Alcohol dehydrogenase-like

Probab=94.53  E-value=0.097  Score=57.81  Aligned_cols=91  Identities=23%  Similarity=0.325  Sum_probs=63.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|.+|.|+|.|.||..+++.++.+|++ |++++.++.+...+...|.. +.       +..+.++     ..|+++.++
T Consensus       192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~  271 (378)
T PLN02827        192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGVTDFINPNDLSEPIQQVIKRMTGGGADYSFECV  271 (378)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEcccccchHHHHHHHHHhCCCCCEEEECC
Confidence            4689999999999999999999999995 77777666543333334432 11       1222222     479999988


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      |....+. ..+..++++ ..++..|-.
T Consensus       272 G~~~~~~-~~l~~l~~g~G~iv~~G~~  297 (378)
T PLN02827        272 GDTGIAT-TALQSCSDGWGLTVTLGVP  297 (378)
T ss_pred             CChHHHH-HHHHhhccCCCEEEEECCc
Confidence            8754443 568888888 888888753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.51  E-value=0.083  Score=60.15  Aligned_cols=70  Identities=27%  Similarity=0.276  Sum_probs=49.3

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH---H--HHhhcCceecC--HHHHhccCcEEEEcCC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA---L--QASMEGYEVTT--MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a---l--~a~~~G~~v~~--Leell~~aDiIi~atg  412 (718)
                      +..+.+++|.|||.|.+|..+|+.|+..|.+|+++|..+...   .  .....|+.+..  -.+....+|+|+.++|
T Consensus        11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~G   87 (480)
T PRK01438         11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPG   87 (480)
T ss_pred             ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCC
Confidence            446789999999999999999999999999999998654211   1  11234654421  1123456899988654

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.50  E-value=0.079  Score=58.10  Aligned_cols=88  Identities=18%  Similarity=0.045  Sum_probs=57.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc---------Cc-------eecCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---------GY-------EVTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~---------G~-------~v~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|.+|..+|..|..-| .|.++.+++.........         ++       ...+++++++.+|+|++++.
T Consensus         8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp   86 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP   86 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence            67999999999999999999888 677766665432111111         22       12367788899999999876


Q ss_pred             CCCCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDII--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+-  -++.-..++++..++++.-|
T Consensus        87 s~~~~~vl~~i~~~l~~~~~vIsl~kG  113 (341)
T PRK12439         87 SHGFRGVLTELAKELRPWVPVVSLVKG  113 (341)
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEEEeC
Confidence            54321  11222345777777777554

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=94.48  E-value=0.089  Score=57.69  Aligned_cols=90  Identities=19%  Similarity=0.238  Sum_probs=62.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHh----c-cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAA----K-EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell----~-~aDiIi~at  411 (718)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.+    . ..|+++.++
T Consensus       184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~  263 (368)
T TIGR02818       184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATDCVNPNDYDKPIQEVIVEITDGGVDYSFECI  263 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCeEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence            358999999999999999999999999 799988777654333334432 11       122222    1 479999888


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGH  436 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GR  436 (718)
                      |....+ .+.++.++++ ..++..|.
T Consensus       264 G~~~~~-~~~~~~~~~~~G~~v~~g~  288 (368)
T TIGR02818       264 GNVNVM-RAALECCHKGWGESIIIGV  288 (368)
T ss_pred             CCHHHH-HHHHHHhhcCCCeEEEEec
Confidence            764333 3567788775 77777775

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=94.45  E-value=0.053  Score=56.10  Aligned_cols=38  Identities=24%  Similarity=0.339  Sum_probs=34.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      .|..++|.|+|+|.+|..+|+.|...|. +++++|.|..
T Consensus        18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~v   56 (228)
T cd00757          18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVV   56 (228)
T ss_pred             HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            5789999999999999999999999999 7888887654

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=94.40  E-value=0.9  Score=49.45  Aligned_cols=169  Identities=19%  Similarity=0.095  Sum_probs=105.5

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|.+||+-|.+.--.    .--.+.|+....-+ .+...++.-+++|++...+...=.|+.++-|.+-+           
T Consensus        77 ~~kgEsl~Dt~~vls----~y~D~iviR~~~~~-~~~~~a~~~~vPVINa~~~~~HPtQaL~Dl~Ti~e-----------  140 (302)
T PRK14805         77 LGKRESVADFAANLS----CWADAIVARVFSHS-TIEQLAEHGSVPVINALCDLYHPCQALADFLTLAE-----------  140 (302)
T ss_pred             CCCCcCHHHHHHHHH----HhCCEEEEeCCChh-HHHHHHHhCCCCEEECCCCCCChHHHHHHHHHHHH-----------
Confidence            356788887654311    11233444432222 23344555678998887766666777777665421           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccH---HH------HhhcCce---ec
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINA---LQ------ASMEGYE---VT  395 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~a---l~------a~~~G~~---v~  395 (718)
                                  ..| .+.|++|++||-+ ++.+..+..+..||++|.++-+.....   ..      +...|..   ..
T Consensus       141 ------------~~g-~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~  207 (302)
T PRK14805        141 ------------QFG-DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS  207 (302)
T ss_pred             ------------HhC-CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence                        122 4899999999985 477888999999999999975432211   10      1123443   24


Q ss_pred             CHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896         396 TMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK  448 (718)
Q Consensus       396 ~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~  448 (718)
                      ++ ++++.+|+|.+.+    +            ...-|+++.++.+|+. ++.-++-  -+.|++.+-+..
T Consensus       208 d~-~a~~~aDvvy~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~lP~~Rg~Ei~~~V~d~  276 (302)
T PRK14805        208 DI-EAIEGHDAIYTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHCQPAHRGVEITSEVMDG  276 (302)
T ss_pred             CH-HHHCCCCEEEeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECCCCCCCCCeeCHHHhCC
Confidence            54 5799999999831    1            1245899999999887 7877765  235777654443

>PLN02546 glutathione reductase

Probab=94.36  E-value=0.12  Score=60.60  Aligned_cols=35  Identities=17%  Similarity=0.042  Sum_probs=32.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.||..+|..+..+|.+|+++++.+
T Consensus       251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~  285 (558)
T PLN02546        251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQK  285 (558)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEecc
Confidence            57999999999999999999999999999987654

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=94.36  E-value=0.11  Score=56.66  Aligned_cols=91  Identities=19%  Similarity=0.174  Sum_probs=63.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCcee--c--C---HHHHhccCcEEEEcCCCCCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEV--T--T---MEEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v--~--~---Leell~~aDiIi~atgt~~lI  417 (718)
                      ..|.+|.|.|.|.||..+++.++.+|++|++++.++.+...+. ..|...  .  +   +.++....|+++.+.|....+
T Consensus       179 ~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~  258 (357)
T PLN02514        179 QSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGADDYLVSSDAAEMQEAADSLDYIIDTVPVFHPL  258 (357)
T ss_pred             CCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCCcEEecCCChHHHHHhcCCCcEEEECCCchHHH
Confidence            4689999999999999999999999999988876654332221 234321  1  1   222233469998887754333


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                       ...++.++++..++.+|..
T Consensus       259 -~~~~~~l~~~G~iv~~G~~  277 (357)
T PLN02514        259 -EPYLSLLKLDGKLILMGVI  277 (357)
T ss_pred             -HHHHHHhccCCEEEEECCC
Confidence             3567889999999998864

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=94.32  E-value=0.85  Score=50.42  Aligned_cols=175  Identities=10%  Similarity=0.005  Sum_probs=105.8

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-CchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYELDEEVAALHLEHL  327 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~AvaeGf~L~r~i~~~~l~~l  327 (718)
                      .|.+||+-|...--.. .   -.+.|+.- +.--.+..+++...++|++.-. +...=.|++++-|.+.+        + 
T Consensus        84 ~~kgEsl~Dtarvls~-y---~D~IviR~-~~~~~~~~~a~~~~vPVINa~~g~~~HPtQaLaDl~Ti~e--------~-  149 (338)
T PRK08192         84 LSKGESLYDTARVLST-Y---SDVIAMRH-PDAGSVKEFAEGSRVPVINGGDGSNEHPTQALLDLFTIQK--------E-  149 (338)
T ss_pred             CCCCCCHHHHHHHHHH-c---CCEEEEeC-CchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHH--------H-
Confidence            3557888776543212 1   22344443 3333445555667788988754 35555677777665432        0 


Q ss_pred             cccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHH-hCCCEEEEEecCCcc---H-HH-HhhcCc--e-ec
Q psy7896         328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLR-LFGSRVIVTEIDPIN---A-LQ-ASMEGY--E-VT  395 (718)
Q Consensus       328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~-~fGa~Viv~d~dp~~---a-l~-a~~~G~--~-v~  395 (718)
                                 ....|..+.|++|++||-+   ++....+..+. -+|++|.++-+....   . .+ +...|.  . +.
T Consensus       150 -----------~~~~g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~  218 (338)
T PRK08192        150 -----------LAHAGRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD  218 (338)
T ss_pred             -----------hhccCCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence                       0001345899999999994   77888887655 459999887543221   1 11 112243  2 35


Q ss_pred             CHHHHhccCcEEEEcCC---------------CCCCcCHHHH-hcCCCCeEEEEcCCC-----CccccHHHHhc
Q psy7896         396 TMEEAAKEGGIFVTTTG---------------CKDIIRGEHF-LQMRDDAIVCNIGHF-----DCEIQVSWLDK  448 (718)
Q Consensus       396 ~Leell~~aDiIi~atg---------------t~~lI~~e~l-~~MK~gAiLIN~GRg-----d~Eid~~aL~~  448 (718)
                      +++++++.+|||.+...               ....++.+.+ ..+|+++++.-+.-.     ..||+.+-+..
T Consensus       219 d~~ea~~~aDvvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHcLP~~~~~r~~Ei~~~V~d~  292 (338)
T PRK08192        219 QLEGNLDKADILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHPLPRDSRAQANELDNDLNSH  292 (338)
T ss_pred             CHHHHHccCCEEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECCCCCCCCCCCcEeCHHHhCC
Confidence            79999999999998411               1245777777 458999999888643     25777654443

>KOG0022|consensus

Probab=94.31  E-value=0.13  Score=56.15  Aligned_cols=96  Identities=21%  Similarity=0.252  Sum_probs=67.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|.|+.|.|+|.+|.++++-+++.|| +++.+|.+|.+-..+...|.. +.       +..|.+.     ..|+-+-++
T Consensus       191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaTe~iNp~d~~~~i~evi~EmTdgGvDysfEc~  270 (375)
T KOG0022|consen  191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGATEFINPKDLKKPIQEVIIEMTDGGVDYSFECI  270 (375)
T ss_pred             CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcceecChhhccccHHHHHHHHhcCCceEEEEec
Confidence            379999999999999999999999999 899999998775555555542 22       2333332     467777788


Q ss_pred             CCCCCcCHHHHhcCCCC---eEEEEcCCCCcccc
Q psy7896         412 GCKDIIRGEHFLQMRDD---AIVCNIGHFDCEIQ  442 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g---AiLIN~GRgd~Eid  442 (718)
                      |+..++. +.|...++|   ++++-+.....++.
T Consensus       271 G~~~~m~-~al~s~h~GwG~sv~iGv~~~~~~i~  303 (375)
T KOG0022|consen  271 GNVSTMR-AALESCHKGWGKSVVIGVAAAGQEIS  303 (375)
T ss_pred             CCHHHHH-HHHHHhhcCCCeEEEEEecCCCcccc
Confidence            8876655 566666776   45555544444444

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=94.31  E-value=0.11  Score=56.06  Aligned_cols=91  Identities=16%  Similarity=0.215  Sum_probs=62.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CHHHH---hc--cCc-EEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TMEEA---AK--EGG-IFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Leel---l~--~aD-iIi~atg  412 (718)
                      -.|++|.|.|.|.+|..+++.++.+|++ |++++.++.+...+...|.. +.     +.+++   ..  ..| +++-++|
T Consensus       159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~d~~v~d~~G  238 (347)
T PRK10309        159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAMQTFNSREMSAPQIQSVLRELRFDQLILETAG  238 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCceEecCcccCHHHHHHHhcCCCCCeEEEECCC
Confidence            3589999999999999999999999997 67777665443222223321 11     12222   22  246 7778888


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....+. +.++.++++..++..|-.
T Consensus       239 ~~~~~~-~~~~~l~~~G~iv~~G~~  262 (347)
T PRK10309        239 VPQTVE-LAIEIAGPRAQLALVGTL  262 (347)
T ss_pred             CHHHHH-HHHHHhhcCCEEEEEccC
Confidence            654443 577889999999988853

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=94.31  E-value=0.14  Score=57.81  Aligned_cols=35  Identities=29%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~  203 (461)
T TIGR01350       169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD  203 (461)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            35899999999999999999999999999998765

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.28  E-value=0.11  Score=56.25  Aligned_cols=88  Identities=8%  Similarity=0.068  Sum_probs=55.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--HHHhh------cCc-------eecCHHHHh-ccCcEEEEcCCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASM------EGY-------EVTTMEEAA-KEGGIFVTTTGC  413 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l~a~~------~G~-------~v~~Leell-~~aDiIi~atgt  413 (718)
                      +|+|||.|.+|..+|..|..-|.+|.++++++...  +....      .+.       ...++++.+ ..+|+|++++..
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks   81 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT   81 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH
Confidence            69999999999999999999999999998876321  11100      011       113566666 589999988765


Q ss_pred             CCCcC-HHHH-h-cCCCCeEEEEcCCC
Q psy7896         414 KDIIR-GEHF-L-QMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~-~e~l-~-~MK~gAiLIN~GRg  437 (718)
                      ..+-. -+.+ . .++++..++...-|
T Consensus        82 ~~~~~~l~~l~~~~l~~~~~vv~~~nG  108 (326)
T PRK14620         82 QQLRTICQQLQDCHLKKNTPILICSKG  108 (326)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEEEcC
Confidence            44322 0112 2 44556555555433

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=94.18  E-value=0.065  Score=55.13  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=33.6

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|+.++|+|||.|.+|..+|+.|...|. +++++|.|.
T Consensus        25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~   62 (212)
T PRK08644         25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDV   62 (212)
T ss_pred             HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4789999999999999999999999999 599998874

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.16  E-value=0.17  Score=56.72  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=31.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       148 ~~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~  182 (444)
T PRK09564        148 EIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED  182 (444)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCc
Confidence            47899999999999999999999999999987654

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.09  E-value=0.14  Score=62.38  Aligned_cols=36  Identities=33%  Similarity=0.262  Sum_probs=32.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++++.|||.|.+|..+|..|+.+|.+|++++..|.
T Consensus       139 ~~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~  174 (785)
T TIGR02374       139 RFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPG  174 (785)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCc
Confidence            478999999999999999999999999999886653

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.05  E-value=0.11  Score=56.26  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=56.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHH-HHh-------h---cC-cee-cCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINAL-QAS-------M---EG-YEV-TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al-~a~-------~---~G-~~v-~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||.|.+|..+|..+...|. +|+++|+.+..+. ++.       .   .+ ... .+.++ +++||+|+++.|+.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p   80 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP   80 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence            579999999999999999988665 8999998654321 110       0   11 122 35666 78999999986532


Q ss_pred             ---CC-------cCH-------HHHhcCCCCeEEEEcCCC
Q psy7896         415 ---DI-------IRG-------EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ---~l-------I~~-------e~l~~MK~gAiLIN~GRg  437 (718)
                         +.       .|.       +.+....+++++++++--
T Consensus        81 ~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP  120 (305)
T TIGR01763        81 RKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNP  120 (305)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCc
Confidence               11       111       223334577888887763

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR02053 MerA mercuric reductase

Probab=94.04  E-value=0.24  Score=56.07  Aligned_cols=34  Identities=26%  Similarity=0.345  Sum_probs=31.4

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~  199 (463)
T TIGR02053       166 PESLAVIGGGAIGVELAQAFARLGSEVTILQRSD  199 (463)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC
Confidence            5899999999999999999999999999998654

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.04  E-value=0.12  Score=58.85  Aligned_cols=65  Identities=17%  Similarity=0.082  Sum_probs=43.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH--HHhh-cCceecCHHHHhccCcEEEEcCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--QASM-EGYEVTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al--~a~~-~G~~v~~Leell~~aDiIi~atg  412 (718)
                      .||+|+|+|+|+-|.++++.|+. |++|+++|..+....  .... ..+.-..-.+.+.+.|+||..+|
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SPg   72 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSPG   72 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECCC
Confidence            58999999999999999999995 999999995433211  1110 11110111345668999987644

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=94.00  E-value=0.18  Score=56.33  Aligned_cols=91  Identities=25%  Similarity=0.350  Sum_probs=64.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEE-EecCCccHHHHhhcCceec------CHHH----Hh--ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV-TEIDPINALQASMEGYEVT------TMEE----AA--KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv-~d~dp~~al~a~~~G~~v~------~Lee----ll--~~aDiIi~atg  412 (718)
                      -.|++|.|.|.|.||..+++.++.+|+++++ .+.++.+...+...|....      ++.+    +.  +..|+++.++|
T Consensus       184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga~~v~~~~~~~~~~~v~~~~~~~g~Dvvid~~G  263 (393)
T TIGR02819       184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGCETVDLSKDATLPEQIEQILGEPEVDCAVDCVG  263 (393)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCCeEEecCCcccHHHHHHHHcCCCCCcEEEECCC
Confidence            4689999999999999999999999998554 5655544333333454221      2222    22  24799999988


Q ss_pred             CCC--------------CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKD--------------IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~--------------lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...              .+ .+.++.++++..++.+|-.
T Consensus       264 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~G~i~~~G~~  301 (393)
T TIGR02819       264 FEARGHGHDGKKEAPATVL-NSLMEVTRVGGAIGIPGLY  301 (393)
T ss_pred             CccccccccccccchHHHH-HHHHHHhhCCCEEEEeeec
Confidence            752              33 4568999999999999875

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=93.98  E-value=0.18  Score=62.00  Aligned_cols=36  Identities=31%  Similarity=0.422  Sum_probs=32.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++++.|||.|.+|..+|..|+.+|.+|++++..|.
T Consensus       144 ~~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~  179 (847)
T PRK14989        144 RSKRGAVVGGGLLGLEAAGALKNLGVETHVIEFAPM  179 (847)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecccc
Confidence            578999999999999999999999999999887653

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=93.96  E-value=0.16  Score=55.47  Aligned_cols=90  Identities=19%  Similarity=0.255  Sum_probs=63.6

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCce-e------cCHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYE-V------TTMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~-v------~~Leell~-----~aDiIi~at  411 (718)
                      -.|.+|.|.|. |.||..+++.++.+|++|++++.++.+...+. ..|.. +      .++.+.++     ..|+++-+.
T Consensus       157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvD~v~d~v  236 (348)
T PLN03154        157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGFDEAFNYKEEPDLDAALKRYFPEGIDIYFDNV  236 (348)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCCCEEEECCCcccHHHHHHHHCCCCcEEEEECC
Confidence            46899999999 99999999999999999998876654432222 23432 1      13333332     368888887


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      |.. . -...++.++++..++.+|..
T Consensus       237 G~~-~-~~~~~~~l~~~G~iv~~G~~  260 (348)
T PLN03154        237 GGD-M-LDAALLNMKIHGRIAVCGMV  260 (348)
T ss_pred             CHH-H-HHHHHHHhccCCEEEEECcc
Confidence            753 2 24678889999999988853

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=93.95  E-value=0.15  Score=55.57  Aligned_cols=91  Identities=23%  Similarity=0.311  Sum_probs=63.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|.+|.|.|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.++     ..|+++-++
T Consensus       186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~v~~~~~~~~d~vid~~  265 (369)
T cd08301         186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVTEFVNPKDHDKPVQEVIAEMTGGGVDYSFECT  265 (369)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEEcccccchhHHHHHHHHhCCCCCEEEECC
Confidence            368999999999999999999999999 799988776554333334432 11       1222222     368888887


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      |....+. ..+..++++ ..++..|..
T Consensus       266 G~~~~~~-~~~~~~~~~~g~~v~~g~~  291 (369)
T cd08301         266 GNIDAMI-SAFECVHDGWGVTVLLGVP  291 (369)
T ss_pred             CChHHHH-HHHHHhhcCCCEEEEECcC
Confidence            7543333 457788885 888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.95  E-value=0.11  Score=58.48  Aligned_cols=69  Identities=28%  Similarity=0.259  Sum_probs=49.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCcee-----cC---HHHH-hccCcEEEEcCCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYEV-----TT---MEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~v-----~~---Leel-l~~aDiIi~atgt  413 (718)
                      .+..+++.|+|+|++|+.+++.|...|.+|+++|.+|........  .++.+     .+   |+++ +.++|.++.++++
T Consensus       228 ~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~  307 (453)
T PRK09496        228 EKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND  307 (453)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence            356799999999999999999999999999999999864322221  23322     12   2222 4678888877654

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=93.93  E-value=0.22  Score=54.87  Aligned_cols=66  Identities=24%  Similarity=0.309  Sum_probs=43.8

Q ss_pred             cEEEEEecChhHHHHHHHHHh-CCCEEEE-EecCCccHHH-Hhhc------------------Ccee-cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRL-FGSRVIV-TEIDPINALQ-ASME------------------GYEV-TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~-fGa~Viv-~d~dp~~al~-a~~~------------------G~~v-~~Leell~~aDi  406 (718)
                      .+|||+|+|+||+.+++.+.. -++++.. ++.+|..... +...                  ++.+ .++++++..+|+
T Consensus         2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            379999999999999998865 4677665 4544421110 1111                  2222 257788888999


Q ss_pred             EEEcCCCC
Q psy7896         407 FVTTTGCK  414 (718)
Q Consensus       407 Ii~atgt~  414 (718)
                      ++.+|+..
T Consensus        82 VIdaT~~~   89 (341)
T PRK04207         82 VVDATPGG   89 (341)
T ss_pred             EEECCCch
Confidence            99988763

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=93.93  E-value=0.075  Score=58.54  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=34.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|..++|.|||.|.+|..+|+.|...|. +++++|.|.
T Consensus        21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~   58 (339)
T PRK07688         21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY   58 (339)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence            4788999999999999999999999999 899999875

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=93.92  E-value=0.16  Score=55.55  Aligned_cols=92  Identities=20%  Similarity=0.239  Sum_probs=63.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHh-----ccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAA-----KEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell-----~~aDiIi~a  410 (718)
                      ...|.+|.|+|.|.+|..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.+     ...|+++.+
T Consensus       182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vid~  261 (365)
T cd08277         182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATDFINPKDSDKPVSEVIREMTGGGVDYSFEC  261 (365)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCcEeccccccchHHHHHHHHhCCCCCEEEEC
Confidence            3468999999999999999999999999 798888766543333233431 11       112222     247999888


Q ss_pred             CCCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      +|....+ .+.++.|+++ ..++.+|..
T Consensus       262 ~g~~~~~-~~~~~~l~~~~G~~v~~g~~  288 (365)
T cd08277         262 TGNADLM-NEALESTKLGWGVSVVVGVP  288 (365)
T ss_pred             CCChHHH-HHHHHhcccCCCEEEEEcCC
Confidence            8754333 3567888775 888888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=93.85  E-value=0.36  Score=52.63  Aligned_cols=88  Identities=17%  Similarity=0.290  Sum_probs=56.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------cee---cCHHHHhccCcEEEEcCCC-
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YEV---TTMEEAAKEGGIFVTTTGC-  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~v---~~Leell~~aDiIi~atgt-  413 (718)
                      .+|+|||.|+||..+|-.+...|.  ++.++|+++..+.. +  ..+.      ..+   .+.+ .+++||+|+.+.|. 
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~-~~~~adivvitaG~~   82 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYS-VTANSKVVIVTAGAR   82 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHH-HhCCCCEEEECCCCC
Confidence            589999999999999998865554  78899986643211 0  0111      122   2444 48999999987542 


Q ss_pred             --CCC------------cC--HHHHhcCCCCeEEEEcCCC
Q psy7896         414 --KDI------------IR--GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 --~~l------------I~--~e~l~~MK~gAiLIN~GRg  437 (718)
                        .++            +.  .+.+....+.+++++++..
T Consensus        83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvsNP  122 (312)
T cd05293          83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVSNP  122 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEccCh
Confidence              122            11  1334455778899998853

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.84  E-value=0.17  Score=57.17  Aligned_cols=66  Identities=15%  Similarity=0.145  Sum_probs=46.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhh---cCceec---CHHHHhccCcEEEEcCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASM---EGYEVT---TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~---~G~~v~---~Leell~~aDiIi~atg  412 (718)
                      ..-+|+|+|+|.+|+.+|+.|+..|++|+++|..+.... ....   .|..+.   .-.+.+.++|+||..++
T Consensus         5 ~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~   77 (448)
T PRK03803          5 SDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPG   77 (448)
T ss_pred             cCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCC
Confidence            356899999999999999999999999999997653211 1121   255442   12345678999987643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.84  E-value=0.12  Score=44.47  Aligned_cols=33  Identities=30%  Similarity=0.321  Sum_probs=30.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +|.|||.|.||..+|..++.+|.+|+++++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccch
Confidence            589999999999999999999999999987764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=93.81  E-value=0.17  Score=55.29  Aligned_cols=91  Identities=20%  Similarity=0.225  Sum_probs=62.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|.+|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.+.     ..|+++.++
T Consensus       185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~v~~~~~~g~d~vid~~  264 (368)
T cd08300         185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGATDCVNPKDHDKPIQQVLVEMTDGGVDYTFECI  264 (368)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCEEEcccccchHHHHHHHHHhCCCCcEEEECC
Confidence            358999999999999999999999999 699888776554333333432 11       1222221     378998888


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      |....+. +.++.++++ ..++.+|..
T Consensus       265 g~~~~~~-~a~~~l~~~~G~~v~~g~~  290 (368)
T cd08300         265 GNVKVMR-AALEACHKGWGTSVIIGVA  290 (368)
T ss_pred             CChHHHH-HHHHhhccCCCeEEEEccC
Confidence            7643333 467778775 777777753

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=93.81  E-value=0.3  Score=44.68  Aligned_cols=73  Identities=25%  Similarity=0.282  Sum_probs=50.1

Q ss_pred             HHHHHHHHHhCCCEEEEEecCCccHHH-Hhh----cCceec-CHHHHhccCcEEEEcCCCCCC--cCHHHH-hcCCCCeE
Q psy7896         360 GKGCAQSLRLFGSRVIVTEIDPINALQ-ASM----EGYEVT-TMEEAAKEGGIFVTTTGCKDI--IRGEHF-LQMRDDAI  430 (718)
Q Consensus       360 G~~vA~~l~~fGa~Viv~d~dp~~al~-a~~----~G~~v~-~Leell~~aDiIi~atgt~~l--I~~e~l-~~MK~gAi  430 (718)
                      +..+++.|+..|++|.++|  |..... ...    .++.+. +++++++.+|.+++++.....  ++-+.+ ..|+++.+
T Consensus        19 ~~~l~~~L~~~g~~V~~~D--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~   96 (106)
T PF03720_consen   19 ALELIEELKERGAEVSVYD--PYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHDEFRELDWEEIAKLMRKPPV   96 (106)
T ss_dssp             HHHHHHHHHHTT-EEEEE---TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEE
T ss_pred             HHHHHHHHHHCCCEEEEEC--CccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCE
Confidence            5678899999999999995  443222 111    356654 799999999999999876544  444444 56888899


Q ss_pred             EEEc
Q psy7896         431 VCNI  434 (718)
Q Consensus       431 LIN~  434 (718)
                      ++++
T Consensus        97 iiD~  100 (106)
T PF03720_consen   97 IIDG  100 (106)
T ss_dssp             EEES
T ss_pred             EEEC
Confidence            9886

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.80  E-value=0.2  Score=53.62  Aligned_cols=87  Identities=20%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             CcEEEEEec-ChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh-cCce-e-----cCHHHHh-----ccCcEEEEcCCC
Q psy7896         348 GKVAVVAGY-GDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM-EGYE-V-----TTMEEAA-----KEGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~-G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~-~G~~-v-----~~Leell-----~~aDiIi~atgt  413 (718)
                      |++|.|.|. |.+|+.+++.++.+|+ +|+++..++.+...+.. .|.. +     .++.+.+     +..|+++.+.+.
T Consensus       155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~~~~gvd~vid~~g~  234 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGFDAAINYKTDNVAERLRELCPEGVDVYFDNVGG  234 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHCCCCceEEEECCCc
Confidence            489999998 9999999999999999 79988766544322211 3432 1     1233322     247888887776


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .. + .+.++.+++++.++..|.
T Consensus       235 ~~-~-~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         235 EI-S-DTVISQMNENSHIILCGQ  255 (345)
T ss_pred             HH-H-HHHHHHhccCCEEEEEee
Confidence            43 3 567889999999998874

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=93.78  E-value=0.091  Score=55.20  Aligned_cols=39  Identities=23%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      ..|+.++|+|||.|.+|..+++.|...|. +++++|.|..
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v   67 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV   67 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence            35789999999999999999999999998 7888887654

>KOG0089|consensus

Probab=93.78  E-value=0.14  Score=54.63  Aligned_cols=92  Identities=21%  Similarity=0.257  Sum_probs=66.5

Q ss_pred             hhhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcC
Q psy7896         340 KYLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       340 ~~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~  418 (718)
                      .+.+.++.||++.|+|--+ +|+-+|.+|..-|+.+.=.+.....   ....+.....++...+++||++.+.|-+++|+
T Consensus       158 ~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVt---i~hr~t~~~~lk~ht~~adivi~a~g~p~li~  234 (309)
T KOG0089|consen  158 ERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVT---IFHRYTSKPQLKHHTRDADIVISAVGIPNLIT  234 (309)
T ss_pred             HHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEE---EEEcCCCchhHHHHHHhcceeehhcCCCcccc
Confidence            4568889999999999987 5999999999997765432211100   00011111235667789999999999999999


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+   ..|+|+-++|.|--
T Consensus       235 ~d---~Ik~Ga~vidvgin  250 (309)
T KOG0089|consen  235 SD---MIKPGAAVIDVGIN  250 (309)
T ss_pred             cc---eeecCceeEecCCC
Confidence            74   46999999999864

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=93.78  E-value=0.24  Score=53.25  Aligned_cols=40  Identities=28%  Similarity=0.348  Sum_probs=35.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  384 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~a  384 (718)
                      .+.||++.|+|.|-.|++++..|...|+ +|+++++++.++
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka  164 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRA  164 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHH
Confidence            3568999999999999999999999998 788999887654

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=93.77  E-value=0.069  Score=53.10  Aligned_cols=43  Identities=35%  Similarity=0.563  Sum_probs=36.9

Q ss_pred             ccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh
Q psy7896         264 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL  306 (718)
Q Consensus       264 ~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v  306 (718)
                      ...+.|+++.|+|+|.+|+.+|+.|+.+|++|.+++..+....
T Consensus        31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~   73 (178)
T PF02826_consen   31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE   73 (178)
T ss_dssp             BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred             ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence            3457899999999999999999999999999999998887553

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=93.76  E-value=0.1  Score=55.04  Aligned_cols=64  Identities=13%  Similarity=0.187  Sum_probs=45.3

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhC-CCEEEE-EecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLF-GSRVIV-TEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~f-Ga~Viv-~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atg  412 (718)
                      .+|+|+|+ |++|+.+++.+... ++++.. +|+++.........++ .+.+++++++.+|+++.++.
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~   69 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT   69 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence            47999998 99999999998764 687664 7777643221111223 23578999888999997654

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=93.71  E-value=0.2  Score=51.42  Aligned_cols=95  Identities=26%  Similarity=0.267  Sum_probs=65.8

Q ss_pred             cccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc
Q psy7896         265 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI  344 (718)
Q Consensus       265 ~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~  344 (718)
                      +.+.|++++|+|.|.+|..-++.|...|..|+|++.++.........-               +    +..+.+..+...
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~---------------~----~i~~~~~~~~~~   65 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQ---------------G----GITWLARCFDAD   65 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHc---------------C----CEEEEeCCCCHH
Confidence            347899999999999999999999999999999976655332211110               0    011112223334


Q ss_pred             cccCcEEEEEecCh--hHHHHHHHHHhCCCEEEEEe
Q psy7896         345 MLAGKVAVVAGYGD--VGKGCAQSLRLFGSRVIVTE  378 (718)
Q Consensus       345 eL~GktVGIIG~G~--IG~~vA~~l~~fGa~Viv~d  378 (718)
                      .+.+..+.|+-.|.  +-..+++.++..|.-|-+.|
T Consensus        66 dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d  101 (205)
T TIGR01470        66 ILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVD  101 (205)
T ss_pred             HhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECC
Confidence            57788888887777  66788888888887776554

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=93.66  E-value=0.11  Score=54.34  Aligned_cols=38  Identities=26%  Similarity=0.419  Sum_probs=34.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      .|++++|.|+|.|.+|..+++.|...|. +++++|.|..
T Consensus         8 ~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V   46 (231)
T cd00755           8 KLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVV   46 (231)
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEE
Confidence            3678999999999999999999999998 8999987764

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.66  E-value=0.22  Score=59.24  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=33.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      -.|++|.|||.|..|...|..|+..|.+|+++|..+.
T Consensus       325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~  361 (654)
T PRK12769        325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPE  361 (654)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            4699999999999999999999999999999987653

>PRK08223 hypothetical protein; Validated

Probab=93.62  E-value=0.11  Score=56.02  Aligned_cols=38  Identities=24%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      .|+..+|.|||+|-+|..+|..|.+.|. ++.++|.|..
T Consensus        24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~V   62 (287)
T PRK08223         24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVF   62 (287)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCc
Confidence            4789999999999999999999999999 7888887754

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.59  E-value=0.12  Score=57.94  Aligned_cols=88  Identities=23%  Similarity=0.225  Sum_probs=58.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-------------------HHhhcC-ceecCHHHHhccCcEEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-------------------QASMEG-YEVTTMEEAAKEGGIFV  408 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-------------------~a~~~G-~~v~~Leell~~aDiIi  408 (718)
                      .+|+|||+|-||..+|..+...|.+|+.+|+++.+-.                   ++...| ++..+=-+-++.||+++
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~~~dv~i   89 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELKECDVFI   89 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcccCCEEE
Confidence            7999999999999999999999999999999875311                   122223 23322223345899999


Q ss_pred             EcCCC-------CCC---cCH-HH-HhcCCCCeEEEEcCC
Q psy7896         409 TTTGC-------KDI---IRG-EH-FLQMRDDAIVCNIGH  436 (718)
Q Consensus       409 ~atgt-------~~l---I~~-e~-l~~MK~gAiLIN~GR  436 (718)
                      .|-.|       .++   .++ +. -..||+|..+|==+-
T Consensus        90 I~VPTPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST  129 (436)
T COG0677          90 ICVPTPLKKYREPDLSYVESAARSIAPVLKKGDLVILEST  129 (436)
T ss_pred             EEecCCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecC
Confidence            87332       111   221 22 357899988776543

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=93.58  E-value=0.1  Score=54.91  Aligned_cols=89  Identities=17%  Similarity=0.200  Sum_probs=62.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhc---cCcEEEEc--CC--CCCCcCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAK---EGGIFVTT--TG--CKDIIRGE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~---~aDiIi~a--tg--t~~lI~~e  420 (718)
                      +++|.||+|+.|..+++++..-|.+|++||++|....++..+|.. ..+++|+++   ...+|-+.  .+  +..+|+ +
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~-~   79 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVID-D   79 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHH-H
Confidence            468999999999999999999999999999998755455555643 457888764   33444332  12  222222 3


Q ss_pred             HHhcCCCCeEEEEcCCCC
Q psy7896         421 HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd  438 (718)
                      .-..|..|=++|+-|...
T Consensus        80 la~~L~~GDivIDGGNS~   97 (300)
T COG1023          80 LAPLLSAGDIVIDGGNSN   97 (300)
T ss_pred             HHhhcCCCCEEEECCccc
Confidence            345778888999887653

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=93.55  E-value=0.31  Score=49.33  Aligned_cols=92  Identities=24%  Similarity=0.304  Sum_probs=63.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHHH-----hccCcEEEEcCCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEEA-----AKEGGIFVTTTGCK  414 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Leel-----l~~aDiIi~atgt~  414 (718)
                      ..|++|.|.|.|.+|+.+++.++..|.+|++++.++.+...+...|.. +.     +..+.     -+..|+++.+.+..
T Consensus       133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~  212 (271)
T cd05188         133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGP  212 (271)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCH
Confidence            468999999999999999999999999999998766433222222221 11     11111     14578988876652


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .. -...++.|+++..+++.|..+
T Consensus       213 ~~-~~~~~~~l~~~G~~v~~~~~~  235 (271)
T cd05188         213 ET-LAQALRLLRPGGRIVVVGGTS  235 (271)
T ss_pred             HH-HHHHHHhcccCCEEEEEccCC
Confidence            22 345678899999999988753

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=93.54  E-value=0.28  Score=52.99  Aligned_cols=85  Identities=21%  Similarity=0.304  Sum_probs=55.8

Q ss_pred             EEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHH------HHhhc--C-cee---cCHHHHhccCcEEEEcCCC---
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINAL------QASME--G-YEV---TTMEEAAKEGGIFVTTTGC---  413 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al------~a~~~--G-~~v---~~Leell~~aDiIi~atgt---  413 (718)
                      |+|||.|.||..+|-.+...|  .++.++|+++.+..      +....  . ..+   .+ .+.++.||+++++.|+   
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p~~   79 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAPRK   79 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCCCC
Confidence            589999999999999998878  58999998775421      11111  1 111   12 4688999999997553   


Q ss_pred             CCC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896         414 KDI------------IR--GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 ~~l------------I~--~e~l~~MK~gAiLIN~GR  436 (718)
                      .++            +.  .+.+....+.++++|++.
T Consensus        80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN  116 (300)
T cd00300          80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVSN  116 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            121            11  123444557889999885

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=93.52  E-value=0.27  Score=55.19  Aligned_cols=85  Identities=20%  Similarity=0.255  Sum_probs=59.3

Q ss_pred             cccCcEEEEEec----------ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCCC
Q psy7896         345 MLAGKVAVVAGY----------GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       345 eL~GktVGIIG~----------G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atgt  413 (718)
                      .+.|++|+|+|+          ..-...+++.|...|++|.+||+.-..  .... .+ ...+++++++.+|.++++|..
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~--~~~~-~~~~~~~~~~~~~~ad~~v~~t~~  386 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPE--EEVK-GLPLIDDLEEALKGADALVILTDH  386 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCCh--hhhh-hcccCCCHHHHHhCCCEEEEecCC
Confidence            589999999997          335789999999999999999643211  1111 11 246888999999999998876


Q ss_pred             CCC--cCHHHHhc-CCCCeEEEE
Q psy7896         414 KDI--IRGEHFLQ-MRDDAIVCN  433 (718)
Q Consensus       414 ~~l--I~~e~l~~-MK~gAiLIN  433 (718)
                      ...  ++-+.+.. |+. .++++
T Consensus       387 ~~~~~~~~~~~~~~~~~-~~v~D  408 (411)
T TIGR03026       387 DEFKDLDLEKIKDLMKG-KVVVD  408 (411)
T ss_pred             HHHhccCHHHHHHhcCC-CEEEe
Confidence            433  45555544 443 45655

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=93.46  E-value=0.1  Score=54.68  Aligned_cols=39  Identities=21%  Similarity=0.415  Sum_probs=34.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~  383 (718)
                      .|++++|.|+|.|.+|..+|+.|...|. +++++|.|...
T Consensus        21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve   60 (240)
T TIGR02355        21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS   60 (240)
T ss_pred             HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence            4788999999999999999999999998 78888877643

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.45  E-value=0.11  Score=53.07  Aligned_cols=42  Identities=33%  Similarity=0.443  Sum_probs=37.7

Q ss_pred             ccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         264 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       264 ~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      +..+.|++++|+|+|.+|..+|+.|.++|++|+++|.++.+.
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~   64 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAV   64 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHH
Confidence            456899999999999999999999999999999999887543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.43  E-value=0.24  Score=58.94  Aligned_cols=37  Identities=32%  Similarity=0.422  Sum_probs=34.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      -.||+|.|||.|..|...|..|+..|.+|+++|..+.
T Consensus       308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~  344 (639)
T PRK12809        308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPE  344 (639)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence            3699999999999999999999999999999987763

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=93.32  E-value=0.11  Score=57.92  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=33.9

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|.+++|.|+|.|.+|..++..|...|. +++++|.|.
T Consensus       132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~  169 (376)
T PRK08762        132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDV  169 (376)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4789999999999999999999999999 788998773

>PRK06223 malate dehydrogenase; Reviewed

Probab=93.31  E-value=0.19  Score=53.92  Aligned_cols=63  Identities=25%  Similarity=0.344  Sum_probs=44.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh--------hcCc--ee---cCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS--------MEGY--EV---TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~--------~~G~--~v---~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|.+|..+|..+...|. +|.++|+++.......        ..+.  .+   .+. +.++.||+|+++.+
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~   79 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG   79 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence            589999999999999999987654 9999998775421100        0111  11   234 45789999998743

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=93.31  E-value=0.092  Score=58.76  Aligned_cols=69  Identities=13%  Similarity=0.243  Sum_probs=55.2

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI  300 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~  300 (718)
                      +-++++.|+.........|+..+    ++=.+.|..+..+.|+++.|+|+|.+|..+|+.|+++|++|.++|.
T Consensus        79 ~~gI~v~napg~na~aVAE~~~~----~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~dp  147 (378)
T PRK15438         79 QAGIGFSAAPGCNAIAVVEYVFS----SLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLCDP  147 (378)
T ss_pred             HCCCEEEECCCcCchHHHHHHHH----HHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence            45788999888777777666554    2223445456678999999999999999999999999999999973

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=93.26  E-value=0.2  Score=51.79  Aligned_cols=91  Identities=22%  Similarity=0.303  Sum_probs=62.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcC-c-eecCHH-HHh--ccCcEEEEcCCCCCCcCH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEG-Y-EVTTME-EAA--KEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G-~-~v~~Le-ell--~~aDiIi~atgt~~lI~~  419 (718)
                      -.|.+|.|.|.|.+|+.+++.++.+|++ |++++.++.+...+...| . .+.... ...  +..|+++.+.+....+ .
T Consensus        96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~~~-~  174 (277)
T cd08255          96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPSAL-E  174 (277)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChHHH-H
Confidence            4689999999999999999999999999 888876654433333334 1 111111 111  2478888776643332 4


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.++.|+++..++++|..
T Consensus       175 ~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         175 TALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             HHHHHhcCCcEEEEEecc
Confidence            568889999999998864

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.24  E-value=0.22  Score=55.51  Aligned_cols=88  Identities=13%  Similarity=0.175  Sum_probs=60.0

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCC-------CEEEEEecCCcc-------HHHHhh------cCce-------ecCHHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFG-------SRVIVTEIDPIN-------ALQASM------EGYE-------VTTMEEA  400 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fG-------a~Viv~d~dp~~-------al~a~~------~G~~-------v~~Leel  400 (718)
                      -++|+|||.|.=|.++|..+..-|       .+|.++.+++..       .+....      .|+.       ..+++++
T Consensus        11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea   90 (365)
T PTZ00345         11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA   90 (365)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence            368999999999999999997655       799998877631       111110      1211       2468889


Q ss_pred             hccCcEEEEcCCCCCCcCHHHHh------cCCCCeEEEEcCCC
Q psy7896         401 AKEGGIFVTTTGCKDIIRGEHFL------QMRDDAIVCNIGHF  437 (718)
Q Consensus       401 l~~aDiIi~atgt~~lI~~e~l~------~MK~gAiLIN~GRg  437 (718)
                      ++.+|+|+++.....+  .+.++      .+++++++|++.-|
T Consensus        91 v~~aDiIvlAVPsq~l--~~vl~~l~~~~~l~~~~~iIS~aKG  131 (365)
T PTZ00345         91 VEDADLLIFVIPHQFL--ESVLSQIKENNNLKKHARAISLTKG  131 (365)
T ss_pred             HhcCCEEEEEcChHHH--HHHHHHhccccccCCCCEEEEEeCC
Confidence            9999999998765433  12222      34557788888766

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.24  E-value=0.28  Score=56.09  Aligned_cols=36  Identities=36%  Similarity=0.550  Sum_probs=33.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      -.|++|.|||.|.+|...|..|+..|.+|+++|..+
T Consensus       139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~  174 (467)
T TIGR01318       139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRHP  174 (467)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCC
Confidence            378999999999999999999999999999998765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=93.18  E-value=0.25  Score=54.54  Aligned_cols=88  Identities=17%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCC--------CEEEEEecCC---ccH-HHHh---------hcCc-------eecCHHHHh
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFG--------SRVIVTEIDP---INA-LQAS---------MEGY-------EVTTMEEAA  401 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fG--------a~Viv~d~dp---~~a-l~a~---------~~G~-------~v~~Leell  401 (718)
                      +|+|||.|+-|.++|..+..-|        .+|.++.+++   ... .+..         ..|+       -..++++++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal   80 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA   80 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence            4899999999999999997756        8999997632   111 1110         0122       124788999


Q ss_pred             ccCcEEEEcCCCCCCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896         402 KEGGIFVTTTGCKDII--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       402 ~~aDiIi~atgt~~lI--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+|+|+.+..+..+-  -.+.-..++++.++|++.-|
T Consensus        81 ~~ADiIIlAVPs~~i~~vl~~l~~~l~~~~~iVs~tKG  118 (342)
T TIGR03376        81 KGADILVFVIPHQFLEGICKQLKGHVKPNARAISCIKG  118 (342)
T ss_pred             hcCCEEEEECChHHHHHHHHHHHhhcCCCCEEEEEeCC
Confidence            9999999987765441  12222356888899999776

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK05086 malate dehydrogenase; Provisional

Probab=93.17  E-value=0.4  Score=52.19  Aligned_cols=88  Identities=18%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             cEEEEEec-ChhHHHHHHHHH---hCCCEEEEEecCCccH---HHHhhcC--ce-----ecCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLR---LFGSRVIVTEIDPINA---LQASMEG--YE-----VTTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~---~fGa~Viv~d~dp~~a---l~a~~~G--~~-----v~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||. |.||++++..+.   +++..+.++|+++...   +......  ..     ..++.+.++.+|+|+.+.|..
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~~   80 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGVA   80 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCCC
Confidence            58999999 999999998773   4556788888765431   1111101  11     125567889999999987643


Q ss_pred             CC--------------cCHHH---HhcCCCCeEEEEcCC
Q psy7896         415 DI--------------IRGEH---FLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ~l--------------I~~e~---l~~MK~gAiLIN~GR  436 (718)
                      +-              +-.+.   +..-.+.+++++++-
T Consensus        81 ~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsN  119 (312)
T PRK05086         81 RKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITN  119 (312)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            21              12222   333356778888766

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.13  E-value=0.72  Score=52.16  Aligned_cols=33  Identities=30%  Similarity=0.438  Sum_probs=30.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +|.|||.|..|+.+|+.|...|.+|+++|..+.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            589999999999999999999999999997654

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=93.12  E-value=0.32  Score=54.55  Aligned_cols=66  Identities=27%  Similarity=0.294  Sum_probs=50.0

Q ss_pred             ccCcEEEEEecC----------hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--Cce-ecCHHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYG----------DVGKGCAQSLRLFGSRVIVTEIDPINALQASME--GYE-VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G----------~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--G~~-v~~Leell~~aDiIi~atg  412 (718)
                      |+||||||.|+-          .-...++.+|+..|++|.+||  |.....+...  +.. ..+++++++.||+++++|.
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYD--P~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te  385 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYD--PVAMENAFRNFPDVELESDAEEALKGADAIVINTE  385 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEEC--chhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc
Confidence            999999999974          237889999999999999995  5432222211  233 3579999999999999887


Q ss_pred             C
Q psy7896         413 C  413 (718)
Q Consensus       413 t  413 (718)
                      -
T Consensus       386 w  386 (414)
T COG1004         386 W  386 (414)
T ss_pred             H
Confidence            4

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=93.12  E-value=0.21  Score=54.64  Aligned_cols=61  Identities=18%  Similarity=0.200  Sum_probs=44.1

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc---eecC---HHHHhccCcEEEEc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY---EVTT---MEEAAKEGGIFVTT  410 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~---~v~~---Leell~~aDiIi~a  410 (718)
                      ||||||.|..|+.+++.++.+|.+|+++|.+|........+-+   ...+   +.++++.+|+|+..
T Consensus         1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e   67 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE   67 (352)
T ss_pred             CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence            5899999999999999999999999999887643221111211   1123   56678899987543

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.12  E-value=0.46  Score=50.91  Aligned_cols=63  Identities=24%  Similarity=0.287  Sum_probs=43.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh-hcCceecCHHHH-hccCcEEEEcCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS-MEGYEVTTMEEA-AKEGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~-~~G~~v~~Leel-l~~aDiIi~atg  412 (718)
                      ++++.|+|.|..+++++..|...|+ +|+++++++.++.... ..+....  +++ ...+|+||.+|.
T Consensus       122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp  187 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTP  187 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCc
Confidence            5789999999999999999999998 5999999886543221 1122111  111 234788877764

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=93.08  E-value=0.34  Score=51.95  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh---ccCcEEEEcCCCCCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA---KEGGIFVTTTGCKDII  417 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell---~~aDiIi~atgt~~lI  417 (718)
                      .|.+|.|.|.|.+|+.+++.++.+|++|++++.++.+...+...|.. +     .++.+.+   +..|+++.+.+....+
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~d~vi~~~g~~~~~  242 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGAHHYIDTSKEDVAEALQELGGAKLILATAPNAKAI  242 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCCcEEecCCCccHHHHHHhcCCCCEEEECCCchHHH
Confidence            58999999999999999999999999999987765443222223321 1     1122222   3468888765533222


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                       ...+..++++..+++.|..
T Consensus       243 -~~~~~~l~~~G~~v~~g~~  261 (333)
T cd08296         243 -SALVGGLAPRGKLLILGAA  261 (333)
T ss_pred             -HHHHHHcccCCEEEEEecC
Confidence             3457788888888888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=93.08  E-value=0.28  Score=57.88  Aligned_cols=67  Identities=18%  Similarity=0.148  Sum_probs=48.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---ecC---HHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---VTT---MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---v~~---Leell~~aDiIi~atg  412 (718)
                      +..|+|||||.|..|+.+++.++.+|.+|+++|.+|........+.+.   +.+   +.++++++|+++....
T Consensus        20 ~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e   92 (577)
T PLN02948         20 VSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIE   92 (577)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecC
Confidence            678999999999999999999999999999999877532111111111   223   4556788998866433

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=93.05  E-value=0.31  Score=51.32  Aligned_cols=62  Identities=23%  Similarity=0.250  Sum_probs=44.7

Q ss_pred             EEEEec-ChhHHHHHHHHHhCC----CEEEEEecCCccHHHH------h-hc--Cce---ecCHHHHhccCcEEEEcCC
Q psy7896         351 AVVAGY-GDVGKGCAQSLRLFG----SRVIVTEIDPINALQA------S-ME--GYE---VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       351 VGIIG~-G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a------~-~~--G~~---v~~Leell~~aDiIi~atg  412 (718)
                      |+|||. |.+|..+|..+...|    -++.++|+++.+....      . ..  ...   ..++.+.+++||+|+.+.+
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~   79 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAG   79 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCC
Confidence            589999 999999999998777    6899999887542111      0 00  112   1346788999999998743

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.85  E-value=0.26  Score=55.35  Aligned_cols=63  Identities=25%  Similarity=0.404  Sum_probs=45.1

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH----Hh--hcCceec--CHHHHhccCcEEEEcCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ----AS--MEGYEVT--TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~----a~--~~G~~v~--~Leell~~aDiIi~atg  412 (718)
                      ++.|||.|.+|+++|+.|+..|.+|+++|..+.....    ..  ..|..+.  .-.+.+..+|+||..++
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~   71 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPG   71 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCC
Confidence            3789999999999999999999999999976542211    11  2365542  11455678999987643

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=92.83  E-value=0.33  Score=52.22  Aligned_cols=90  Identities=19%  Similarity=0.237  Sum_probs=62.5

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCce--e-----cCHHHHh-----ccCcEEEEcC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYE--V-----TTMEEAA-----KEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~--v-----~~Leell-----~~aDiIi~at  411 (718)
                      -.|++|.|.|. |.+|+.+++.++.+|++|+++..++.+...... .|..  +     .++.+.+     ...|+++-+.
T Consensus       150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~i~~~~~~gvd~v~d~~  229 (338)
T cd08295         150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGFDDAFNYKEEPDLDAALKRYFPNGIDIYFDNV  229 (338)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCCceeEEcCCcccHHHHHHHhCCCCcEEEEECC
Confidence            36899999998 999999999999999999987766544322222 3321  1     1233322     2468888877


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      |.. . -.+.++.++++..+++.|..
T Consensus       230 g~~-~-~~~~~~~l~~~G~iv~~G~~  253 (338)
T cd08295         230 GGK-M-LDAVLLNMNLHGRIAACGMI  253 (338)
T ss_pred             CHH-H-HHHHHHHhccCcEEEEeccc
Confidence            753 2 24678889999999988753

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=92.79  E-value=0.17  Score=48.15  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|+|.|.||.-+|.+|+..|.+|.++.+.+
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence            6899999999999999999999999998766

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.79  E-value=0.44  Score=51.21  Aligned_cols=61  Identities=28%  Similarity=0.311  Sum_probs=41.8

Q ss_pred             EEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHH------H-Hh-hcC--cee---cCHHHHhccCcEEEEcCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINAL------Q-AS-MEG--YEV---TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al------~-a~-~~G--~~v---~~Leell~~aDiIi~atg  412 (718)
                      |+|||.|.+|..+|..+...|. +|+++|+++....      . .. ..+  ..+   .+. +.+++||+|+.+.+
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g   75 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecC
Confidence            6899999999999998875554 9999999875421      0 00 011  111   233 45899999998644

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=92.73  E-value=0.17  Score=56.43  Aligned_cols=37  Identities=27%  Similarity=0.322  Sum_probs=33.7

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|++++|.|||.|.+|..+++.|...|. +++++|.|.
T Consensus        38 ~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~   75 (370)
T PRK05600         38 RLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDT   75 (370)
T ss_pred             HhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            4789999999999999999999999998 899988773

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=92.72  E-value=0.26  Score=56.76  Aligned_cols=89  Identities=18%  Similarity=0.113  Sum_probs=59.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccHHHH--------------h-h--cC--cee-cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINALQA--------------S-M--EG--YEV-TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~al~a--------------~-~--~G--~~v-~~Leell~~aDi  406 (718)
                      ++|+|||.|.+|..+|..+...  |.+|+++|.++.+....              . .  .+  ..+ .+.++.++++|+
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv   81 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI   81 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence            5799999999999999999865  68899999887542110              0 0  01  222 346778899999


Q ss_pred             EEEcCCCCC---------CcC--------HHHHhcCCCCeEEEEcCCC
Q psy7896         407 FVTTTGCKD---------IIR--------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       407 Ii~atgt~~---------lI~--------~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++|.+|.-         -.+        ++.-+.++++.++|.-+-.
T Consensus        82 i~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STv  129 (473)
T PLN02353         82 VFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTV  129 (473)
T ss_pred             EEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCC
Confidence            998754331         111        1223456889999876653

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=92.71  E-value=0.25  Score=57.62  Aligned_cols=40  Identities=35%  Similarity=0.414  Sum_probs=35.9

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ..+.+|++.|+|.|.+|++++..|...|++|+++++++.+
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~  414 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYER  414 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence            4578999999999999999999999999999999887544

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.66  E-value=0.25  Score=59.59  Aligned_cols=96  Identities=24%  Similarity=0.251  Sum_probs=62.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------cee-cCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YEV-TTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~v-~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+..-|.+|+++|+++.....+           ...|             ... .++ +.+++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN  392 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            689999999999999999999999999999887532110           0111             111 234 45789


Q ss_pred             CcEEEEcC-CC---CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         404 GGIFVTTT-GC---KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       404 aDiIi~at-gt---~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +|+|+.+. ++   +.-+-++.-+.++++++|......   +++..|.+
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~---l~i~~ia~  438 (714)
T TIGR02437       393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST---ISISLLAK  438 (714)
T ss_pred             CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHh
Confidence            99999873 32   212333344677999988654332   44444443

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=92.65  E-value=0.098  Score=48.12  Aligned_cols=80  Identities=19%  Similarity=0.248  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHH----HHhc--cCcEEEEcCCCCCCcCHHHHhcC
Q psy7896         358 DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTME----EAAK--EGGIFVTTTGCKDIIRGEHFLQM  425 (718)
Q Consensus       358 ~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Le----ell~--~aDiIi~atgt~~lI~~e~l~~M  425 (718)
                      .||..+++.++.+|++|++++.++.+...+...|...      .++.    ++..  ..|+++.++|+...+. ..++.+
T Consensus         1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~-~~~~~l   79 (130)
T PF00107_consen    1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQ-EAIKLL   79 (130)
T ss_dssp             HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHH-HHHHHE
T ss_pred             ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHH-HHHHHh
Confidence            3899999999999999999998886654444555321      1222    3333  4899999999654444 678899


Q ss_pred             CCCeEEEEcCCCC
Q psy7896         426 RDDAIVCNIGHFD  438 (718)
Q Consensus       426 K~gAiLIN~GRgd  438 (718)
                      ++++.++.+|-..
T Consensus        80 ~~~G~~v~vg~~~   92 (130)
T PF00107_consen   80 RPGGRIVVVGVYG   92 (130)
T ss_dssp             EEEEEEEEESSTS
T ss_pred             ccCCEEEEEEccC
Confidence            9999999998864

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=92.65  E-value=0.34  Score=52.78  Aligned_cols=85  Identities=13%  Similarity=0.091  Sum_probs=55.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHh-CCCEEE-EEecCCccH--HHHhhcCcee--cCHHHHhc-----cCcEEEEcCCCCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRL-FGSRVI-VTEIDPINA--LQASMEGYEV--TTMEEAAK-----EGGIFVTTTGCKDI  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~-fGa~Vi-v~d~dp~~a--l~a~~~G~~v--~~Leell~-----~aDiIi~atgt~~l  416 (718)
                      ..+|||||.|+||+..+..+.. -++++. ++++||...  ..+...|+..  .+.++++.     +.|+++.+|++.  
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~--   81 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG--   81 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence            4689999999999997776654 466755 578887542  2244456643  47899885     578899888763  


Q ss_pred             cCHHH-HhcCCCCeEEEEc
Q psy7896         417 IRGEH-FLQMRDDAIVCNI  434 (718)
Q Consensus       417 I~~e~-l~~MK~gAiLIN~  434 (718)
                      .-.+. ....+.|..+++-
T Consensus        82 ~H~e~a~~a~eaGk~VID~  100 (302)
T PRK08300         82 AHVRHAAKLREAGIRAIDL  100 (302)
T ss_pred             HHHHHHHHHHHcCCeEEEC
Confidence            11222 2344666655544

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.64  E-value=0.24  Score=59.78  Aligned_cols=87  Identities=22%  Similarity=0.202  Sum_probs=58.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-----------HhhcC-------------cee-cCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-----------ASMEG-------------YEV-TTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-----------a~~~G-------------~~v-~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+..-|.+|+++|+++.....           ....|             ..+ .++ +.++.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  392 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER  392 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence            68999999999999999999999999999988753210           01111             111 244 45689


Q ss_pred             CcEEEEc-CCC---CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         404 GGIFVTT-TGC---KDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       404 aDiIi~a-tgt---~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      ||+|+.+ +++   +.-+-.+.-+.++++++|.....
T Consensus       393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTS  429 (715)
T PRK11730        393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTS  429 (715)
T ss_pred             CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCC
Confidence            9999987 332   22233334456788888765433

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=92.64  E-value=0.2  Score=46.37  Aligned_cols=87  Identities=11%  Similarity=0.004  Sum_probs=51.9

Q ss_pred             EEEEEe-cChhHHHHHHHHHhC-CCEEEEE-ecCCc--cHHHHhhcCce---ecCH--HHH-hccCcEEEEcCCCCCCcC
Q psy7896         350 VAVVAG-YGDVGKGCAQSLRLF-GSRVIVT-EIDPI--NALQASMEGYE---VTTM--EEA-AKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       350 tVGIIG-~G~IG~~vA~~l~~f-Ga~Viv~-d~dp~--~al~a~~~G~~---v~~L--eel-l~~aDiIi~atgt~~lI~  418 (718)
                      +++|+| .|.+|+.++..+... +.++..+ .+++.  +..........   +..+  +++ ..++|+|++++++.....
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~   80 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKE   80 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHH
Confidence            589999 599999999998874 7777665 43321  11111111110   1111  222 248999999877642222


Q ss_pred             H--HHHhcCCCCeEEEEcCC
Q psy7896         419 G--EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       419 ~--e~l~~MK~gAiLIN~GR  436 (718)
                      .  .....+++|.++|+++.
T Consensus        81 ~~~~~~~~~~~g~~viD~s~  100 (122)
T smart00859       81 IAPLLPKAAEAGVKVIDLSS  100 (122)
T ss_pred             HHHHHHhhhcCCCEEEECCc
Confidence            1  23455789999999984

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PRK11579 putative oxidoreductase; Provisional

Probab=92.62  E-value=0.32  Score=53.13  Aligned_cols=64  Identities=19%  Similarity=0.112  Sum_probs=43.9

Q ss_pred             cEEEEEecChhHHH-HHHHHHh-CCCEEE-EEecCCccHHHHhhcCc-eecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRL-FGSRVI-VTEIDPINALQASMEGY-EVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~-fGa~Vi-v~d~dp~~al~a~~~G~-~v~~Leell~--~aDiIi~atgt  413 (718)
                      .+|||||+|.||+. .+..++. -++++. ++|+++.+.. +...+. .+.+++++++  +.|+|+++|.+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~ell~~~~vD~V~I~tp~   74 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKVK-ADWPTVTVVSEPQHLFNDPNIDLIVIPTPN   74 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHHH-hhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence            48999999999985 4565544 478876 5777764432 111122 3568999996  57999998776

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=92.59  E-value=0.81  Score=51.91  Aligned_cols=64  Identities=23%  Similarity=0.192  Sum_probs=43.1

Q ss_pred             EEEEEecChhHHHHHH---HH---HhCCCEEEEEecCCccHHHHh--------hcC----ce-ecCHHHHhccCcEEEEc
Q psy7896         350 VAVVAGYGDVGKGCAQ---SL---RLFGSRVIVTEIDPINALQAS--------MEG----YE-VTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~---~l---~~fGa~Viv~d~dp~~al~a~--------~~G----~~-v~~Leell~~aDiIi~a  410 (718)
                      +|+|||.|.+|...+-   .+   ..-|.+|.++|+++.+.....        ..+    +. ..++.++++.||+|+.+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~a   81 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINT   81 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEe
Confidence            6999999999998554   33   334669999999985432110        011    11 34678899999999887


Q ss_pred             CCC
Q psy7896         411 TGC  413 (718)
Q Consensus       411 tgt  413 (718)
                      .+.
T Consensus        82 i~~   84 (423)
T cd05297          82 IQV   84 (423)
T ss_pred             eEe
Confidence            543

linked to 3D####ucture

>PRK10083 putative oxidoreductase; Provisional

Probab=92.57  E-value=0.33  Score=51.84  Aligned_cols=91  Identities=22%  Similarity=0.248  Sum_probs=60.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHh-CCCE-EEEEecCCccHHHHhhcCce-ec-----CHHHHhc----cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRL-FGSR-VIVTEIDPINALQASMEGYE-VT-----TMEEAAK----EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~-fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Leell~----~aDiIi~atgt  413 (718)
                      -.|.+|.|.|.|.+|+.+++.++. +|++ |++++.++.+...+...|.. +.     ++.+.+.    +.|+++.+++.
T Consensus       159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~g~~~d~vid~~g~  238 (339)
T PRK10083        159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWVINNAQEPLGEALEEKGIKPTLIIDAACH  238 (339)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEEecCccccHHHHHhcCCCCCCEEEECCCC
Confidence            468999999999999999999996 6996 66677665443322233432 11     2333332    24577777764


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+ .+.++.++++..+++.|..
T Consensus       239 ~~~~-~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        239 PSIL-EEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             HHHH-HHHHHHhhcCCEEEEEccC
Confidence            3333 3567888999999988764

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=92.53  E-value=1.6  Score=47.64  Aligned_cols=65  Identities=23%  Similarity=0.308  Sum_probs=53.9

Q ss_pred             HHHHHHhcccccCCceEEEeeecc--hhhHHHHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEE
Q psy7896         525 MALRRKYGAQKILKGARIAGCLHM--TVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVY  592 (718)
Q Consensus       525 ~~Lr~~f~~~kpl~G~~i~~~lh~--~~~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~  592 (718)
                      ..|+++|..   |+|++|++|.-+  .-..-.++..|+.+||+|.++|-..|--.+++...|.+.|+.+.
T Consensus       147 ~TI~~~~G~---~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~  213 (316)
T COG0540         147 YTIREEFGR---LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVV  213 (316)
T ss_pred             HHHHHHhCC---cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEE
Confidence            456666665   999999999999  33444689999999999999999999999999999998885543

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=92.48  E-value=0.27  Score=47.87  Aligned_cols=99  Identities=18%  Similarity=0.129  Sum_probs=62.5

Q ss_pred             ccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCC--CCCcCHHHH
Q psy7896         346 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGC--KDIIRGEHF  422 (718)
Q Consensus       346 L~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt--~~lI~~e~l  422 (718)
                      ..|++|++||+= +    +++.++..+.+|.++|.+|....+ ...++.....++++++||+++.+-.|  .+.|+ +-+
T Consensus         9 ~~~~~V~~VG~f~P----~~~~l~~~~~~v~v~d~~~~~~~~-~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~-~iL   82 (147)
T PF04016_consen    9 GPGDKVGMVGYFQP----LVEKLKERGAEVRVFDLNPDNIGE-EPGDVPDEDAEEILPWADVVIITGSTLVNGTID-DIL   82 (147)
T ss_dssp             TTTSEEEEES--HC----CHHHHCCCCSEEEEEESSGGG--S-SCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHH-HHH
T ss_pred             cCCCEEEEEcCcHH----HHHHHhcCCCCEEEEECCCCCCCC-CCCcCCHHHHHHHHccCCEEEEEeeeeecCCHH-HHH
Confidence            478999999962 3    678888899999999999853211 11223344678999999998764221  12333 457


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhcccc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKNAV  451 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~~l  451 (718)
                      +..+++..++=.|-.. ..-++.|.+.++
T Consensus        83 ~~~~~~~~vil~GpS~-~~~P~~l~~~Gv  110 (147)
T PF04016_consen   83 ELARNAREVILYGPSA-PLHPEALFDYGV  110 (147)
T ss_dssp             HHTTTSSEEEEESCCG-GS-GGGGCCTT-
T ss_pred             HhCccCCeEEEEecCc-hhhHHHHHhCCC
Confidence            7788888888888753 344445655443

; PDB: 3L5O_B 3NPG_A.

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=92.48  E-value=0.29  Score=54.94  Aligned_cols=88  Identities=23%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--------------HHHh-----hcC-ce-ecCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--------------LQAS-----MEG-YE-VTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--------------l~a~-----~~G-~~-v~~Leell~~aDiI  407 (718)
                      ++|.|+|.|-+|...+..+..+|.+|+.+|+|+.+-              ++..     ..| .. ..+.+++++++|++
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~   80 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV   80 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence            579999999999999999999999999999987541              1111     112 22 24678899999999


Q ss_pred             EEcCCCC----CCcC--------HHHHhcCCCCeEEEEcCC
Q psy7896         408 VTTTGCK----DIIR--------GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       408 i~atgt~----~lI~--------~e~l~~MK~gAiLIN~GR  436 (718)
                      ++++||+    +-+|        ++..+.++..+++|+=+-
T Consensus        81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KST  121 (414)
T COG1004          81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKST  121 (414)
T ss_pred             EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCC
Confidence            9986652    2233        223456666688888654

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=92.36  E-value=0.44  Score=52.47  Aligned_cols=93  Identities=17%  Similarity=0.197  Sum_probs=61.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----C--HHHHh-----ccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----T--MEEAA-----KEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~--Leell-----~~aDiIi~a  410 (718)
                      .-.|.+|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.     +  ..+.+     +..|+|+.+
T Consensus       188 ~~~g~~VlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~a~~lGa~~~i~~~~~~~~~~~~v~~~~~~~~d~vld~  267 (373)
T cd08299         188 VTPGSTCAVFGLGGVGLSAIMGCKAAGASRIIAVDINKDKFAKAKELGATECINPQDYKKPIQEVLTEMTDGGVDFSFEV  267 (373)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEecccccchhHHHHHHHHhCCCCeEEEEC
Confidence            3468999999999999999999999999 799988766543333333421 11     1  22222     247888888


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++....+.......++++..++..|..
T Consensus       268 ~g~~~~~~~~~~~~~~~~G~~v~~g~~  294 (373)
T cd08299         268 IGRLDTMKAALASCHEGYGVSVIVGVP  294 (373)
T ss_pred             CCCcHHHHHHHHhhccCCCEEEEEccC
Confidence            776444443222334678888888864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=92.35  E-value=0.19  Score=55.75  Aligned_cols=37  Identities=22%  Similarity=0.241  Sum_probs=33.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|++++|.|||+|.+|..+++.|...|. +++++|.|.
T Consensus        25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~   62 (355)
T PRK05597         25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDT   62 (355)
T ss_pred             HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            4788999999999999999999999999 788888765

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=92.33  E-value=0.42  Score=50.80  Aligned_cols=86  Identities=16%  Similarity=0.217  Sum_probs=50.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEEE-EecCCccH--HHHhhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVIV-TEIDPINA--LQASMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Viv-~d~dp~~a--l~a~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      .+|||||+|+||+.+++.+... ++++.. ++.+....  .+....+.. +.+++++-.+.|+++.++++... -.-...
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~~~-~e~~~~   80 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHAAL-KEHVVP   80 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHHHH-HHHHHH
Confidence            4799999999999999998765 566443 33332211  111112333 45688874568999999876422 222233


Q ss_pred             cCCC--CeEEEEcC
Q psy7896         424 QMRD--DAIVCNIG  435 (718)
Q Consensus       424 ~MK~--gAiLIN~G  435 (718)
                      .++.  ..++.+++
T Consensus        81 aL~aGk~Vvi~s~~   94 (265)
T PRK13303         81 ILKAGIDCAVISVG   94 (265)
T ss_pred             HHHcCCCEEEeChH
Confidence            4444  44444554

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=92.31  E-value=0.47  Score=51.22  Aligned_cols=91  Identities=18%  Similarity=0.255  Sum_probs=62.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee------cCH----HHHhc--cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV------TTM----EEAAK--EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v------~~L----eell~--~aDiIi~atg  412 (718)
                      -.|++|.|.|.|.+|+.+++.++.+|+ +|++++.++.+...+...|...      .++    .++..  ..|+++.+.+
T Consensus       171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~~~i~~~~~~~~~~l~~~~~~~~~d~vid~~g  250 (351)
T cd08233         171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGATIVLDPTEVDVVAEVRKLTGGGGVDVSFDCAG  250 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCccCHHHHHHHHhCCCCCCEEEECCC
Confidence            368999999999999999999999999 7888876654432222223321      112    12222  3799988876


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....+ .+.++.|+++..++.+|..
T Consensus       251 ~~~~~-~~~~~~l~~~G~~v~~g~~  274 (351)
T cd08233         251 VQATL-DTAIDALRPRGTAVNVAIW  274 (351)
T ss_pred             CHHHH-HHHHHhccCCCEEEEEccC
Confidence            53333 3567889999999998864

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=92.31  E-value=0.72  Score=50.96  Aligned_cols=99  Identities=21%  Similarity=0.284  Sum_probs=70.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-cC-----H----HHHhc-cCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-TT-----M----EEAAK-EGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-~~-----L----eell~-~aDiIi~at  411 (718)
                      --.|.+|.|+|+|.||.++.+.++..|+ +++.+|.+|.+...+...|.. + .+     +    .++-. -+|+.+.++
T Consensus       183 v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT~~vn~~~~~~vv~~i~~~T~gG~d~~~e~~  262 (366)
T COG1062         183 VEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGATHFVNPKEVDDVVEAIVELTDGGADYAFECV  262 (366)
T ss_pred             CCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCceeecchhhhhHHHHHHHhcCCCCCEEEEcc
Confidence            3479999999999999999999999999 688899999876666655642 1 11     1    22333 689999999


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCC--CccccHH
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVS  444 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~  444 (718)
                      |+.+.+. ..|+...++...+-+|-.  ..++++.
T Consensus       263 G~~~~~~-~al~~~~~~G~~v~iGv~~~~~~i~~~  296 (366)
T COG1062         263 GNVEVMR-QALEATHRGGTSVIIGVAGAGQEISTR  296 (366)
T ss_pred             CCHHHHH-HHHHHHhcCCeEEEEecCCCCceeecC
Confidence            9877554 566666666655555543  3566543

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=92.28  E-value=0.24  Score=52.61  Aligned_cols=92  Identities=23%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CHH--HH--hccCcEEEEcCCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TME--EA--AKEGGIFVTTTGCK  414 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~Le--el--l~~aDiIi~atgt~  414 (718)
                      ..|.+|.|+|.|.+|+.+++.++.+|++ |++++.++.+.......|.. +.     +..  ..  -+..|+++.+.+..
T Consensus       158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~vd~v~~~~~~~  237 (334)
T cd08234         158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGATETVDPSREDPEAQKEDNPYGFDVVIEATGVP  237 (334)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCeEEecCCCCCHHHHHHhcCCCCcEEEECCCCh
Confidence            4678999999999999999999999998 77777665443222222321 11     111  11  13578988876542


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                       ..-.+.++.|+++..++++|..+
T Consensus       238 -~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         238 -KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             -HHHHHHHHHHhcCCEEEEEecCC
Confidence             23345678889999999988653

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=92.25  E-value=0.41  Score=52.60  Aligned_cols=87  Identities=23%  Similarity=0.213  Sum_probs=64.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--c------Cc------e-ecCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--E------GY------E-VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~------G~------~-v~~Leell~~aDiIi~atgt  413 (718)
                      ++|.|||.|.=|.++|+.+..-|.+|.++-++|....+...  .      |.      . ..++.++++.+|+|+.+..+
T Consensus         2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs   81 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS   81 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh
Confidence            57999999999999999999999999999877643211111  1      11      1 24689999999999998776


Q ss_pred             CCCcCHHHH----hcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHF----LQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l----~~MK~gAiLIN~GRg  437 (718)
                      ..+  .+.+    ..++++++++++.-|
T Consensus        82 ~~~--r~v~~~l~~~l~~~~~iv~~sKG  107 (329)
T COG0240          82 QAL--REVLRQLKPLLLKDAIIVSATKG  107 (329)
T ss_pred             HHH--HHHHHHHhhhccCCCeEEEEecc
Confidence            544  1222    345799999999876

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=92.21  E-value=0.15  Score=57.23  Aligned_cols=69  Identities=23%  Similarity=0.294  Sum_probs=53.7

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI  300 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~  300 (718)
                      +-++++.|+.........|+..+    ++=.+.|..+..+.|+++.|+|+|.+|+.+|+.|+++|++|.++|.
T Consensus        79 ~~gI~v~napg~na~aVAE~v~~----~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~Dp  147 (381)
T PRK00257         79 EAGITWSSAPGCNARGVVDYVLG----SLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVCDP  147 (381)
T ss_pred             HCCCEEEECCCcChHHHHHHHHH----HHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence            45778888877766666665443    2233445556678999999999999999999999999999999975

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=92.21  E-value=0.13  Score=44.12  Aligned_cols=34  Identities=29%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      +++|+|.|++|..+|..++.+|..|++++..+..
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~   34 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRL   34 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchh
Confidence            5899999999999999999999999999887774

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=92.19  E-value=0.2  Score=60.28  Aligned_cols=85  Identities=19%  Similarity=0.127  Sum_probs=55.7

Q ss_pred             cEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHH-----------hh-------------cCcee-cCHHHHhc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQA-----------SM-------------EGYEV-TTMEEAAK  402 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a-----------~~-------------~G~~v-~~Leell~  402 (718)
                      ++|+|||.|.+|..+|..+. ..|.+|+++|+++.....+           ..             ....+ .++ +.++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence            68999999999999999887 5899999999887421100           01             11122 234 4678


Q ss_pred             cCcEEEEcC-CC---CCCcCHHHHhcCCCCeEEEEc
Q psy7896         403 EGGIFVTTT-GC---KDIIRGEHFLQMRDDAIVCNI  434 (718)
Q Consensus       403 ~aDiIi~at-gt---~~lI~~e~l~~MK~gAiLIN~  434 (718)
                      .||+|+.+. ++   +.-+-++.-+.++++++|...
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasn  419 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASN  419 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeC
Confidence            999999863 32   112223333567888877643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=92.18  E-value=0.47  Score=51.17  Aligned_cols=92  Identities=20%  Similarity=0.283  Sum_probs=63.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-ec-----CH-H---HHh--ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-VT-----TM-E---EAA--KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v~-----~L-e---ell--~~aDiIi~atg  412 (718)
                      -.|++|.|.|.|.||+.+++.++.+|+. |++++.++.+...+...|.. +.     ++ +   ++.  +..|+++.+++
T Consensus       165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~i~~~~~~~~~d~vld~~g  244 (351)
T cd08285         165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGATDIVDYKNGDVVEQILKLTGGKGVDAVIIAGG  244 (351)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCceEecCCCCCHHHHHHHHhCCCCCcEEEECCC
Confidence            3589999999999999999999999994 78887766443322233321 11     11 1   222  24788888877


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ....+ .+.++.++++..+++.|..+
T Consensus       245 ~~~~~-~~~~~~l~~~G~~v~~g~~~  269 (351)
T cd08285         245 GQDTF-EQALKVLKPGGTISNVNYYG  269 (351)
T ss_pred             CHHHH-HHHHHHhhcCCEEEEecccC
Confidence            54333 35688899999999987653

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.16  E-value=0.55  Score=50.46  Aligned_cols=91  Identities=16%  Similarity=0.178  Sum_probs=63.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC-----H-HHHhccCcEEEEcCCCCCCcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT-----M-EEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~-----L-eell~~aDiIi~atgt~~lI~  418 (718)
                      -.|.+|.|.|.|.+|+.+++.++.+|++|++++.++.+...+...|.. +.+     . .+.-+..|+++.+.+... ..
T Consensus       168 ~~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~~~d~v~~~~g~~~-~~  246 (337)
T cd05283         168 GPGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGADEFIATKDPEAMKKAAGSLDLIIDTVSASH-DL  246 (337)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEecCcchhhhhhccCCceEEEECCCCcc-hH
Confidence            358899999999999999999999999999987765443222223332 111     1 112345788888877642 23


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+.++.++++..++++|..
T Consensus       247 ~~~~~~l~~~G~~v~~g~~  265 (337)
T cd05283         247 DPYLSLLKPGGTLVLVGAP  265 (337)
T ss_pred             HHHHHHhcCCCEEEEEecc
Confidence            5668889999999988864

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=92.13  E-value=0.47  Score=50.18  Aligned_cols=89  Identities=25%  Similarity=0.284  Sum_probs=60.7

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh-----ccCcEEEEcCCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA-----KEGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell-----~~aDiIi~atgt  413 (718)
                      -.|.+|.|.| .|.+|+.+++.++.+|++|+++..++.+.......|.. +     .++.+.+     +..|+++-+.+.
T Consensus       142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~~~~gvd~vld~~g~  221 (329)
T cd08294         142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGFDAVFNYKTVSLEEALKEAAPDGIDCYFDNVGG  221 (329)
T ss_pred             CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHCCCCcEEEEECCCH
Confidence            3689999999 59999999999999999999887665443222223431 1     1222222     236888877665


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      . . ..+.++.++++..++++|.
T Consensus       222 ~-~-~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         222 E-F-SSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             H-H-HHHHHHhhccCCEEEEEcc
Confidence            3 2 2466888899999998875

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PRK12742 oxidoreductase; Provisional

Probab=92.12  E-value=0.72  Score=46.43  Aligned_cols=35  Identities=23%  Similarity=0.270  Sum_probs=30.6

Q ss_pred             cccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEec
Q psy7896         345 MLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEI  379 (718)
Q Consensus       345 eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~  379 (718)
                      .+.||++.|.|. |.||+.+|+.+...|++|++..+
T Consensus         3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~   38 (237)
T PRK12742          3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYA   38 (237)
T ss_pred             CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecC
Confidence            367999999996 78999999999999999987643

>KOG0068|consensus

Probab=92.11  E-value=0.21  Score=54.85  Aligned_cols=36  Identities=31%  Similarity=0.369  Sum_probs=32.9

Q ss_pred             cccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec
Q psy7896         265 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI  300 (718)
Q Consensus       265 ~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~  300 (718)
                      .-+.||.+.|+|+|.+|..+|..++.+|..|+.+|.
T Consensus       142 ~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dp  177 (406)
T KOG0068|consen  142 WELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDP  177 (406)
T ss_pred             eEEeccEEEEeecccchHHHHHHHHhcCceEEeecC
Confidence            357999999999999999999999999999988774

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=92.11  E-value=0.49  Score=47.17  Aligned_cols=32  Identities=25%  Similarity=0.321  Sum_probs=29.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      +|+|||.|.+|..+++.|...|. +++++|.|.
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence            58999999999999999999999 599998775

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=92.04  E-value=0.56  Score=53.01  Aligned_cols=71  Identities=13%  Similarity=0.095  Sum_probs=52.3

Q ss_pred             cccccCcEEEEEec----------ChhHHHHHHHHHhCC-CEEEEEecCCccHHHH-hhcCceecCHHHHhccCcEEEEc
Q psy7896         343 DIMLAGKVAVVAGY----------GDVGKGCAQSLRLFG-SRVIVTEIDPINALQA-SMEGYEVTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       343 g~eL~GktVGIIG~----------G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a-~~~G~~v~~Leell~~aDiIi~a  410 (718)
                      +.++.|++|+|+|+          ..-...+++.|...| ++|.+||+.- ..... ........+++++++.+|.++++
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~-~~~~~~~~~~~~~~~~~~~~~~ad~vvi~  393 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNI-HQLPKKLDGLVTLVSLDEALATADVLVML  393 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCC-CchhhhccCceeeCCHHHHHhCCCEEEEC
Confidence            56689999999997          335789999999996 9999996431 11111 11233456899999999999998


Q ss_pred             CCCC
Q psy7896         411 TGCK  414 (718)
Q Consensus       411 tgt~  414 (718)
                      |+..
T Consensus       394 t~~~  397 (415)
T PRK11064        394 VDHS  397 (415)
T ss_pred             CCCH
Confidence            8764

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=92.03  E-value=0.58  Score=51.13  Aligned_cols=91  Identities=20%  Similarity=0.209  Sum_probs=63.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-----cCHHHHh-----ccCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-----TTMEEAA-----KEGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-----~~Leell-----~~aDiIi~atgt  413 (718)
                      -.|++|.|.|.|.+|..+++.++.+|+ .|++++.++.+...+...|.. +     .++.+.+     +..|+++.+.|.
T Consensus       185 ~~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~d~vld~~g~  264 (365)
T cd08278         185 RPGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGATHVINPKEEDLVAAIREITGGGVDYALDTTGV  264 (365)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCcEEecCCCcCHHHHHHHHhCCCCcEEEECCCC
Confidence            358999999999999999999999999 588887766543322222321 1     1222222     247888888775


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+ .+.++.+++++.++..|..
T Consensus       265 ~~~~-~~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         265 PAVI-EQAVDALAPRGTLALVGAP  287 (365)
T ss_pred             cHHH-HHHHHHhccCCEEEEeCcC
Confidence            4444 3568889999999988764

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=92.03  E-value=0.33  Score=56.74  Aligned_cols=37  Identities=35%  Similarity=0.428  Sum_probs=33.7

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .-.|++|.|||.|.+|..+|..|+.+|++|+++|..+
T Consensus       134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~  170 (564)
T PRK12771        134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGP  170 (564)
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            3579999999999999999999999999999998654

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=92.03  E-value=0.29  Score=54.12  Aligned_cols=63  Identities=24%  Similarity=0.344  Sum_probs=43.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhh----cCcee--------cCHHHHhccCcEEEEcCCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASM----EGYEV--------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~----~G~~v--------~~Leell~~aDiIi~atgt  413 (718)
                      |+|+|+|.||+.+++.|...+-  +|++.++++.+......    ..+..        .++.++++++|+|+.+.+.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp   77 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGP   77 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSG
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCcc
Confidence            7899999999999999987764  89999998876433221    12221        1366789999999987653

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PLN03139 formate dehydrogenase; Provisional

Probab=92.03  E-value=6.3  Score=44.47  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=57.2

Q ss_pred             HHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHH
Q psy7896         365 QSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVS  444 (718)
Q Consensus       365 ~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~  444 (718)
                      +.+...|.++++++..+...          ..+.+.++++|++++......-++++.++.+++=-++...|.|-+-+|.+
T Consensus        69 ~~l~~~g~~~v~~~~~~~~~----------~~~~~~l~dadili~~~~~~~~~~~e~l~~ap~LK~I~~~g~G~D~iDl~  138 (386)
T PLN03139         69 DWLESQGHQYIVTDDKEGPD----------CELEKHIPDLHVLITTPFHPAYVTAERIKKAKNLELLLTAGIGSDHIDLP  138 (386)
T ss_pred             HHHHhcCCeEEEeCCCCCCH----------HHHHHHhCCCeEEEEcCccCCCCCHHHHhhCCCccEEEECCccccccCHH
Confidence            67788899988874221110          13456788999988754333458999999998888888999887779998


Q ss_pred             HHhccccceee
Q psy7896         445 WLDKNAVEKVN  455 (718)
Q Consensus       445 aL~~~~l~~~~  455 (718)
                      ++.+.++.+..
T Consensus       139 aa~~~gI~V~n  149 (386)
T PLN03139        139 AAAAAGLTVAE  149 (386)
T ss_pred             HHHHCCeEEEE
Confidence            87776554443

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=92.00  E-value=0.59  Score=51.22  Aligned_cols=88  Identities=16%  Similarity=0.156  Sum_probs=55.4

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCC-------CEEEEEecCCccH-HHH----hhcC-------c-eecCHHHHhccCcEE
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFG-------SRVIVTEIDPINA-LQA----SMEG-------Y-EVTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fG-------a~Viv~d~dp~~a-l~a----~~~G-------~-~v~~Leell~~aDiI  407 (718)
                      -+|+|+|. |.||+.++..|...+       .+|.++|+++... .+.    ..+.       . ...++.+.++.+|+|
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiV   82 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVA   82 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEE
Confidence            36999999 999999999987644       4899999855320 111    0111       0 123566889999999


Q ss_pred             EEcCCCC---CC-------cCH-------HHHhcC-CCCeEEEEcCC
Q psy7896         408 VTTTGCK---DI-------IRG-------EHFLQM-RDDAIVCNIGH  436 (718)
Q Consensus       408 i~atgt~---~l-------I~~-------e~l~~M-K~gAiLIN~GR  436 (718)
                      +.+.|..   +.       .|.       +.+... ++++++++++.
T Consensus        83 I~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN  129 (325)
T cd01336          83 ILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN  129 (325)
T ss_pred             EEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence            9764421   11       111       234444 56888888874

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=91.99  E-value=0.7  Score=49.28  Aligned_cols=89  Identities=21%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             cCcEEEEE--ecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHH----Hh--ccCcEEEEcCC
Q psy7896         347 AGKVAVVA--GYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEE----AA--KEGGIFVTTTG  412 (718)
Q Consensus       347 ~GktVGII--G~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Lee----ll--~~aDiIi~atg  412 (718)
                      .+.++.|+  |.|.+|+.+++.++.+|++|++++.++.+...+...|.. +     .++.+    +.  +..|+++.+++
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~v~~~~~~~~~d~vid~~g  221 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIGAEYVLNSSDPDFLEDLKELIAKLNATIFFDAVG  221 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEECCCccHHHHHHHHhCCCCCcEEEECCC
Confidence            56667675  889999999999999999999887766544333333432 1     12222    22  24799988887


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....  ...+..++++..++..|..
T Consensus       222 ~~~~--~~~~~~l~~~G~~v~~g~~  244 (324)
T cd08291         222 GGLT--GQILLAMPYGSTLYVYGYL  244 (324)
T ss_pred             cHHH--HHHHHhhCCCCEEEEEEec
Confidence            6533  3468889999999988753

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>PRK13529 malate dehydrogenase; Provisional

Probab=91.97  E-value=0.82  Score=53.56  Aligned_cols=105  Identities=17%  Similarity=0.202  Sum_probs=78.2

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHh----CCC-------EEEEEecCCc-----------cHHHHhhc-Cc------
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRL----FGS-------RVIVTEIDPI-----------NALQASME-GY------  392 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~----fGa-------~Viv~d~dp~-----------~al~a~~~-G~------  392 (718)
                      .|..|...++.|+|.|..|..+|+.+..    .|.       ++.++|..-.           +..-+... ..      
T Consensus       289 ~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa~~~~~~~~~~~~  368 (563)
T PRK13529        289 TGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYARKREELADWDTE  368 (563)
T ss_pred             hCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHhhhcccccccccc
Confidence            4678899999999999999999999876    687       7888775421           00111110 00      


Q ss_pred             -eecCHHHHhccC--cEEEEcCCCCCCcCHHHHhcCCC---CeEEEEcCCCCc--cccHHHH
Q psy7896         393 -EVTTMEEAAKEG--GIFVTTTGCKDIIRGEHFLQMRD---DAIVCNIGHFDC--EIQVSWL  446 (718)
Q Consensus       393 -~v~~Leell~~a--DiIi~atgt~~lI~~e~l~~MK~---gAiLIN~GRgd~--Eid~~aL  446 (718)
                       ...+|.|+++..  |+++-+++..++++++.++.|.+   ..|+.-.+.-..  |+..+..
T Consensus       369 ~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a  430 (563)
T PRK13529        369 GDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDL  430 (563)
T ss_pred             cCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHH
Confidence             124799999988  99999888789999999999987   888888887644  7776543

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.95  E-value=0.25  Score=59.86  Aligned_cols=87  Identities=17%  Similarity=0.153  Sum_probs=58.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------cee-cCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YEV-TTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~v-~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+           ...|             ... .++ +.+++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~  414 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDY-SGFKN  414 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCH-HHhcc
Confidence            689999999999999999999999999999887531110           0111             111 234 35689


Q ss_pred             CcEEEEc-CCC---CCCcCHHHHhcCCCCeEEE-EcCC
Q psy7896         404 GGIFVTT-TGC---KDIIRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       404 aDiIi~a-tgt---~~lI~~e~l~~MK~gAiLI-N~GR  436 (718)
                      ||+|+.+ .++   +.-+-.+.-+.++++++|. |++.
T Consensus       415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs  452 (737)
T TIGR02441       415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA  452 (737)
T ss_pred             CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC
Confidence            9999976 332   2223334446789999876 5554

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=91.92  E-value=0.32  Score=45.71  Aligned_cols=62  Identities=18%  Similarity=0.299  Sum_probs=42.2

Q ss_pred             EEEEEec-ChhHHHHHHHHHh-CCCEEE-EEecCCccH----H-HH---hhcCce-ecCHHHHhccCcEEEEcC
Q psy7896         350 VAVVAGY-GDVGKGCAQSLRL-FGSRVI-VTEIDPINA----L-QA---SMEGYE-VTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       350 tVGIIG~-G~IG~~vA~~l~~-fGa~Vi-v~d~dp~~a----l-~a---~~~G~~-v~~Leell~~aDiIi~at  411 (718)
                      +|+|+|+ |++|+.+++.+.. -|+++. ++++.+...    . +.   ...|+. ..++++++.++|+++-.|
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence            7999999 9999999999987 778755 466665110    0 00   112333 357999999999999776

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=91.87  E-value=0.64  Score=54.57  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=78.1

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHh-----CCC-------EEEEEecCCc---------cHHH--HhhcCceecCHH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRL-----FGS-------RVIVTEIDPI---------NALQ--ASMEGYEVTTME  398 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~-----fGa-------~Viv~d~dp~---------~al~--a~~~G~~v~~Le  398 (718)
                      .+..|...+|.|+|.|.-|..+|+.+..     .|.       ++.++|.+-.         ...+  -..+.-...+|.
T Consensus       315 ~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~  394 (581)
T PLN03129        315 TGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLL  394 (581)
T ss_pred             hCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHH
Confidence            4678899999999999999999998876     466       6777765421         1100  111222346899


Q ss_pred             HHhcc--CcEEEEcCCCCCCcCHHHHhcCC---CCeEEEEcCCCC--ccccHHHH
Q psy7896         399 EAAKE--GGIFVTTTGCKDIIRGEHFLQMR---DDAIVCNIGHFD--CEIQVSWL  446 (718)
Q Consensus       399 ell~~--aDiIi~atgt~~lI~~e~l~~MK---~gAiLIN~GRgd--~Eid~~aL  446 (718)
                      |+++.  .|+++-+++..++|+++.++.|.   +..|+.-.+.-.  .|+..+..
T Consensus       395 e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a  449 (581)
T PLN03129        395 EAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEA  449 (581)
T ss_pred             HHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHH
Confidence            99998  99999988877999999999996   778888877754  57766533

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=91.85  E-value=0.48  Score=46.01  Aligned_cols=60  Identities=27%  Similarity=0.341  Sum_probs=45.8

Q ss_pred             EEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------cCHHHHhccCcEEEEcCC
Q psy7896         351 AVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       351 VGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------~~Leell~~aDiIi~atg  412 (718)
                      |.|+|. |.||+.+++.|...|.+|++.-+++.+..+  ..+.++        .++.++++.+|.|+.+.+
T Consensus         1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~   69 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAG   69 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCH
T ss_pred             eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhh
Confidence            678995 999999999999999999999888775433  233322        235677889999988754

...

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=91.82  E-value=2.4  Score=46.16  Aligned_cols=171  Identities=19%  Similarity=0.156  Sum_probs=105.1

Q ss_pred             ccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy7896         247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH  326 (718)
Q Consensus       247 ~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~  326 (718)
                      ...|.+||+-|--.-. +.+..+    |.-+++-=..+...++--+++|.+-=+|...-.|.+++-+.+.          
T Consensus        81 ~Qlgr~Esi~DTArVL-sr~~D~----I~~R~~~~~~ve~lA~~s~VPViNgLtD~~HP~Q~LADl~Ti~----------  145 (310)
T COG0078          81 SQLGRGESIKDTARVL-SRMVDA----IMIRGFSHETLEELAKYSGVPVINGLTDEFHPCQALADLMTIK----------  145 (310)
T ss_pred             cccCCCCcHHHHHHHH-Hhhhhe----EEEecccHHHHHHHHHhCCCceEcccccccCcHHHHHHHHHHH----------
Confidence            4568888876533321 112222    2223333345555667777899876555555555555544332          


Q ss_pred             hcccccccchhhhhhhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc---cH-----HH-HhhcC--cee
Q psy7896         327 LGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI---NA-----LQ-ASMEG--YEV  394 (718)
Q Consensus       327 lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~---~a-----l~-a~~~G--~~v  394 (718)
                                   ++.|. ++|+++.-+|-|+ ++..+...+..||++|.+.-+...   ..     .+ +...|  +.+
T Consensus       146 -------------E~~g~-l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~  211 (310)
T COG0078         146 -------------EHFGS-LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITL  211 (310)
T ss_pred             -------------HhcCc-ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEE
Confidence                         22333 8999999999885 899999999999999999643222   11     11 11224  333


Q ss_pred             -cCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcCCCCeEEEEc--CCCCccccHHHH
Q psy7896         395 -TTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQMRDDAIVCNI--GHFDCEIQVSWL  446 (718)
Q Consensus       395 -~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~MK~gAiLIN~--GRgd~Eid~~aL  446 (718)
                       .+.+++++.+|||.+-+    |             ...-+|.+.++.-++++++.-|  ++-..|+.-+-+
T Consensus       212 t~d~~eAv~gADvvyTDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCLPA~rG~EVTdeV~  283 (310)
T COG0078         212 TEDPEEAVKGADVVYTDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCLPAHRGEEVTDEVF  283 (310)
T ss_pred             ecCHHHHhCCCCEEEecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCCCCCCCCccCHHHh
Confidence             47999999999999731    1             1145888888888889988877  322245543433

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.80  E-value=0.41  Score=53.89  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=42.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHh--ccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAA--KEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell--~~aDiIi~atg  412 (718)
                      ++|.|+|+|..|+++|+.|+ .|++|++.|..+..... ...|..+.+ ++.+  .++|+|+..++
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~-~~~gi~~~~-~~~~~~~~~d~vv~sp~   63 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHK-DEEGNLLLP-SNDFDPNKSDLEIPSPG   63 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccch-hhcCCEEec-HHHcCcCCCCEEEECCC
Confidence            36899999999999999999 99999999965432211 112554432 2233  46898887643

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=91.79  E-value=0.45  Score=51.56  Aligned_cols=90  Identities=22%  Similarity=0.336  Sum_probs=62.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----C-------HHHHh--ccCcEEEEc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----T-------MEEAA--KEGGIFVTT  410 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~-------Leell--~~aDiIi~a  410 (718)
                      .|++|.|.|.|.+|+.+++.++.+|+ +|++++..+.+...+...|.. +.     +       +.++.  +..|+++.+
T Consensus       177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~~~vi~~~~~~~~~~~~~i~~~~~~~~~d~vid~  256 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFGADATIDIDELPDPQRRAIVRDITGGRGADVVIEA  256 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCCeEEcCcccccHHHHHHHHHHhCCCCCcEEEEC
Confidence            68999999999999999999999999 899887665443222223431 11     1       11122  246888887


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+....+ .+.++.|+++..++.+|..
T Consensus       257 ~g~~~~~-~~~~~~l~~~G~~v~~g~~  282 (361)
T cd08231         257 SGHPAAV-PEGLELLRRGGTYVLVGSV  282 (361)
T ss_pred             CCChHHH-HHHHHHhccCCEEEEEcCC
Confidence            7653333 3568889999999988864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=91.57  E-value=0.28  Score=56.92  Aligned_cols=46  Identities=22%  Similarity=0.206  Sum_probs=40.2

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG  312 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG  312 (718)
                      ..|.+|+|+|.|++|+.+++.++.+|..|+++|.++.+..++...|
T Consensus       163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslG  208 (509)
T PRK09424        163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMG  208 (509)
T ss_pred             cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence            4699999999999999999999999999999999999875544433

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=91.56  E-value=0.58  Score=55.87  Aligned_cols=36  Identities=25%  Similarity=0.302  Sum_probs=33.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      -.+|+|.|||.|..|...|..|+..|.+|+++|..+
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~  226 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE  226 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence            368999999999999999999999999999998765

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.52  E-value=0.41  Score=50.69  Aligned_cols=90  Identities=22%  Similarity=0.175  Sum_probs=58.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHh--ccCcEEEEcCCCCCCcCHHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAA--KEGGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell--~~aDiIi~atgt~~lI~~e~l  422 (718)
                      ..|.+|.|.|.|.+|+.+++.++.+|++|+++..++.+...+...|... .+..+..  +..|+++.+.|....+ ...+
T Consensus       154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vid~~g~~~~~-~~~~  232 (319)
T cd08242         154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARRLGVETVLPDEAESEGGGFDVVVEATGSPSGL-ELAL  232 (319)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCCcEEeCccccccCCCCCEEEECCCChHHH-HHHH
Confidence            4689999999999999999999999999988876654433222334322 1121111  2468887776653222 2446


Q ss_pred             hcCCCCeEEEEcCC
Q psy7896         423 LQMRDDAIVCNIGH  436 (718)
Q Consensus       423 ~~MK~gAiLIN~GR  436 (718)
                      +.++++..++..+.
T Consensus       233 ~~l~~~g~~v~~~~  246 (319)
T cd08242         233 RLVRPRGTVVLKST  246 (319)
T ss_pred             HHhhcCCEEEEEcc
Confidence            67788777776543

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=91.51  E-value=0.26  Score=50.41  Aligned_cols=66  Identities=21%  Similarity=0.272  Sum_probs=45.0

Q ss_pred             cCcEEEEEecChhHHHHHHHH--HhCCCEEEE-EecCCccHHHHhhcCcee---cCHHHHhcc--CcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSL--RLFGSRVIV-TEIDPINALQASMEGYEV---TTMEEAAKE--GGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l--~~fGa~Viv-~d~dp~~al~a~~~G~~v---~~Leell~~--aDiIi~atgt  413 (718)
                      ..++|+|||+|.+|+.+++.+  ...|.+++. +|.+|.+... ...|+.+   .++++++++  .|+++.++..
T Consensus        83 ~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~-~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~  156 (213)
T PRK05472         83 RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGT-KIGGIPVYHIDELEEVVKENDIEIGILTVPA  156 (213)
T ss_pred             CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCC-EeCCeEEcCHHHHHHHHHHCCCCEEEEeCCc
Confidence            457899999999999999863  467888775 7777644311 1134333   346677754  8988887654

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.50  E-value=0.25  Score=54.11  Aligned_cols=67  Identities=21%  Similarity=0.201  Sum_probs=45.8

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHH--hCCCEEEEEecCCccHHHHh--hc---CceecC------HHHHhccCcEEEEcC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLR--LFGSRVIVTEIDPINALQAS--ME---GYEVTT------MEEAAKEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~--~fGa~Viv~d~dp~~al~a~--~~---G~~v~~------Leell~~aDiIi~at  411 (718)
                      ++.++|+|||. |+||..+|..+.  ++.-++.++|++.... ++.  .+   ...+..      ..+.++.+|+|+.+.
T Consensus         6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g-~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita   84 (321)
T PTZ00325          6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPG-VAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA   84 (321)
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcc-cccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence            46679999999 999999999998  4555899999843221 110  11   122221      257899999999876


Q ss_pred             CC
Q psy7896         412 GC  413 (718)
Q Consensus       412 gt  413 (718)
                      |.
T Consensus        85 G~   86 (321)
T PTZ00325         85 GV   86 (321)
T ss_pred             CC
Confidence            54

>PLN00106 malate dehydrogenase

Probab=91.46  E-value=0.25  Score=54.24  Aligned_cols=91  Identities=16%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHH--hCCCEEEEEecCCccH--HH--HhhcCcee------cCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLR--LFGSRVIVTEIDPINA--LQ--ASMEGYEV------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~--~fGa~Viv~d~dp~~a--l~--a~~~G~~v------~~Leell~~aDiIi~atgt  413 (718)
                      ..++|+|||. |+||..+|..+.  ++.-++.++|+++...  ++  .......+      .++.+.++.+|+|+.+.|.
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG~   96 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAGV   96 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCCC
Confidence            3479999999 999999999997  4445899999877211  11  00001111      2346889999999987542


Q ss_pred             C---CC-----------cCHH---HHhcCCCCeEEEEcCCC
Q psy7896         414 K---DI-----------IRGE---HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~---~l-----------I~~e---~l~~MK~gAiLIN~GRg  437 (718)
                      .   +.           |-.+   .+....+.+++++++.-
T Consensus        97 ~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNP  137 (323)
T PLN00106         97 PRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNP  137 (323)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            1   11           1112   23344577888887764

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=91.44  E-value=0.65  Score=48.46  Aligned_cols=89  Identities=21%  Similarity=0.240  Sum_probs=63.6

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--ecCHHHHh-ccCcEEEEcCCCCCCcCHHHH
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--VTTMEEAA-KEGGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--v~~Leell-~~aDiIi~atgt~~lI~~e~l  422 (718)
                      .|.+|.|.|. |.+|+.+++.++.+|++|+++..++.+...+...|..  +...+++. +..|+++.+.+...  ..+.+
T Consensus       132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~vl~~~g~~~--~~~~~  209 (305)
T cd08270         132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAEGLRELGAAEVVVGGSELSGAPVDLVVDSVGGPQ--LARAL  209 (305)
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEeccccccCCCceEEEECCCcHH--HHHHH
Confidence            5899999999 8999999999999999999987665443222223431  11111221 24788888877653  35678


Q ss_pred             hcCCCCeEEEEcCCC
Q psy7896         423 LQMRDDAIVCNIGHF  437 (718)
Q Consensus       423 ~~MK~gAiLIN~GRg  437 (718)
                      +.|+.+..++++|..
T Consensus       210 ~~l~~~G~~v~~g~~  224 (305)
T cd08270         210 ELLAPGGTVVSVGSS  224 (305)
T ss_pred             HHhcCCCEEEEEecc
Confidence            999999999999864

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=91.43  E-value=0.5  Score=51.81  Aligned_cols=87  Identities=16%  Similarity=0.174  Sum_probs=54.3

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC-------EEEEEecCCcc--HH-HH--hhcC-------ceec-CHHHHhccCcEEE
Q psy7896         350 VAVVAGY-GDVGKGCAQSLRLFGS-------RVIVTEIDPIN--AL-QA--SMEG-------YEVT-TMEEAAKEGGIFV  408 (718)
Q Consensus       350 tVGIIG~-G~IG~~vA~~l~~fGa-------~Viv~d~dp~~--al-~a--~~~G-------~~v~-~Leell~~aDiIi  408 (718)
                      +|+|||. |+||..+|..+...|.       ++.++|+.+..  +. ++  ..+.       +... +..+.+++||+|+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~Dl~d~~~~~~~~~~~~~~~~~~~~~aDiVV   80 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVMELMDCAFPLLDGVVPTHDPAVAFTDVDVAI   80 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEeehhcccchhcCceeccCChHHHhCCCCEEE
Confidence            5899999 9999999998876554       48888875432  10 00  0111       1111 4468899999999


Q ss_pred             EcCCCC---CC------------cC--HHHHhcC-CCCeEEEEcCC
Q psy7896         409 TTTGCK---DI------------IR--GEHFLQM-RDDAIVCNIGH  436 (718)
Q Consensus       409 ~atgt~---~l------------I~--~e~l~~M-K~gAiLIN~GR  436 (718)
                      .+.|..   +.            +.  .+.+... ++.+++++++.
T Consensus        81 itAG~~~~~~~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivvsN  126 (324)
T TIGR01758        81 LVGAFPRKEGMERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVVGN  126 (324)
T ss_pred             EcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCC
Confidence            875421   11            10  1234445 57899999874

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=91.34  E-value=0.39  Score=57.90  Aligned_cols=96  Identities=17%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             cEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHH-----------hhcC-------------cee-cCHHHHhc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQA-----------SMEG-------------YEV-TTMEEAAK  402 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~v-~~Leell~  402 (718)
                      ++|+|||.|.+|..+|..+. ..|.+|+++|.++.....+           ...|             ..+ .++ +.++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence            78999999999999999987 7899999999887421110           0111             111 234 4578


Q ss_pred             cCcEEEEcC-CC---CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         403 EGGIFVTTT-GC---KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       403 ~aDiIi~at-gt---~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      .||+|+-+. ++   +.-+-++.-+.++++++|.....+   +++..|.+
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~---l~i~~la~  435 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS---LPIGQIAA  435 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC---CCHHHHHH
Confidence            999999873 32   112333334567999988755443   44444443

>PRK07411 hypothetical protein; Validated

Probab=91.33  E-value=0.27  Score=55.20  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=33.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|+..+|+|||+|.+|..+|+.|...|. +++++|.|.
T Consensus        35 ~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~   72 (390)
T PRK07411         35 RLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDV   72 (390)
T ss_pred             HHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCE
Confidence            4788999999999999999999999998 688887664

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=91.28  E-value=0.66  Score=48.98  Aligned_cols=88  Identities=20%  Similarity=0.144  Sum_probs=60.8

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC---H-HHHh-----ccCcEEEEcCCCCC
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT---M-EEAA-----KEGGIFVTTTGCKD  415 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~---L-eell-----~~aDiIi~atgt~~  415 (718)
                      .|++|.|+|. |.+|+.+++.++.+|++|++++.++.+...+...|.. +.+   . .+.+     +..|+++.+.+.. 
T Consensus       146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~d~vld~~g~~-  224 (326)
T cd08289         146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAADYLKKLGAKEVIPREELQEESIKPLEKQRWAGAVDPVGGK-  224 (326)
T ss_pred             CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCEEEcchhHHHHHHHhhccCCcCEEEECCcHH-
Confidence            4789999999 9999999999999999999887666543222223331 111   1 1111     2368888777763 


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      . ..+.+..|+++..++..|.
T Consensus       225 ~-~~~~~~~l~~~G~~i~~g~  244 (326)
T cd08289         225 T-LAYLLSTLQYGGSVAVSGL  244 (326)
T ss_pred             H-HHHHHHHhhcCCEEEEEee
Confidence            2 2456888999999998875

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>PRK04148 hypothetical protein; Provisional

Probab=91.23  E-value=2.7  Score=40.73  Aligned_cols=37  Identities=30%  Similarity=0.273  Sum_probs=33.7

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .++++++||.| .|..+|..|.+.|+.|+.+|.++...
T Consensus        16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV   52 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAV   52 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHH
Confidence            56889999999 99999999999999999999999854

>PLN02602 lactate dehydrogenase

Probab=91.22  E-value=0.5  Score=52.41  Aligned_cols=87  Identities=15%  Similarity=0.231  Sum_probs=55.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------ceec---CHHHHhccCcEEEEcCCC-
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YEVT---TMEEAAKEGGIFVTTTGC-  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~v~---~Leell~~aDiIi~atgt-  413 (718)
                      ++|+|||.|+||..+|-.+...|.  ++.++|+++..+.. +  ..+.      ..+.   +. +.+++||+|+.+.|. 
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~  116 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR  116 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence            799999999999999998875554  78999987753211 0  0111      2221   33 448999999987542 


Q ss_pred             --CCC------------cC--HHHHhcCCCCeEEEEcCC
Q psy7896         414 --KDI------------IR--GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 --~~l------------I~--~e~l~~MK~gAiLIN~GR  436 (718)
                        .++            +.  .+.+....+.+++++++.
T Consensus       117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN  155 (350)
T PLN02602        117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVSN  155 (350)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence              121            11  122444567888888875

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=91.21  E-value=0.93  Score=47.74  Aligned_cols=89  Identities=21%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e---c--CHH----HHh--ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V---T--TME----EAA--KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v---~--~Le----ell--~~aDiIi~atg  412 (718)
                      -.|.+|.|.|. |.+|+.+++.++.+|++|+++...+.........|.. +   .  ++.    ++.  +..|+|+.+.+
T Consensus       138 ~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~~~d~v~d~~g  217 (324)
T cd08292         138 KPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGVAELRALGIGPVVSTEQPGWQDKVREAAGGAPISVALDSVG  217 (324)
T ss_pred             CCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHhcCCCEEEcCCCchHHHHHHHHhCCCCCcEEEECCC
Confidence            36899999986 8999999999999999988875443322221122331 1   1  111    222  24799988877


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .. .+ .+.++.++++..++.+|.
T Consensus       218 ~~-~~-~~~~~~l~~~g~~v~~g~  239 (324)
T cd08292         218 GK-LA-GELLSLLGEGGTLVSFGS  239 (324)
T ss_pred             Ch-hH-HHHHHhhcCCcEEEEEec
Confidence            64 33 567899999999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=91.16  E-value=0.19  Score=54.74  Aligned_cols=187  Identities=21%  Similarity=0.265  Sum_probs=103.5

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHH------------hhh--------cccccCCcEEEEEecCCCChhHHHH
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGL------------KRA--------TDIMLAGKVAVVAGYGDVGKGCAQS  287 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i------------~r~--------t~~~~~Gk~vvViGyG~vG~~~A~a  287 (718)
                      +.+++|.|+.+.......|...+.-=++.+.+            .+.        ....+.||++.|+|+|.+|+.+|+.
T Consensus        84 ~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~vA~~  163 (311)
T PRK08410         84 KKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI  163 (311)
T ss_pred             hCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHHHHHH
Confidence            46788888877766665555444211111111            000        0135899999999999999999999


Q ss_pred             HHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHH
Q psy7896         288 LRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSL  367 (718)
Q Consensus       288 Lra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l  367 (718)
                      ++++|.+|..+|..+...    ..++...                                             .+-..+
T Consensus       164 ~~~fgm~V~~~d~~~~~~----~~~~~~~---------------------------------------------~l~ell  194 (311)
T PRK08410        164 AQAFGAKVVYYSTSGKNK----NEEYERV---------------------------------------------SLEELL  194 (311)
T ss_pred             HhhcCCEEEEECCCcccc----ccCceee---------------------------------------------cHHHHh
Confidence            999999999987643211    0111100                                             111333


Q ss_pred             HhCCCEEEEEecCCccHHHHhhcCceecCHHHH--hccCcEEEEcCCCCCCcCHHHH-hcCCCCeEEEEcCC--CCcccc
Q psy7896         368 RLFGSRVIVTEIDPINALQASMEGYEVTTMEEA--AKEGGIFVTTTGCKDIIRGEHF-LQMRDDAIVCNIGH--FDCEIQ  442 (718)
Q Consensus       368 ~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel--l~~aDiIi~atgt~~lI~~e~l-~~MK~gAiLIN~GR--gd~Eid  442 (718)
                      +.  ++|++.. -|...     +.....+-+++  ++ .+.++..++--.+||.+.+ +.++.|-+-  .|-  +..|..
T Consensus       195 ~~--sDvv~lh-~Plt~-----~T~~li~~~~~~~Mk-~~a~lIN~aRG~vVDe~AL~~AL~~g~i~--AaLDV~~~EP~  263 (311)
T PRK08410        195 KT--SDIISIH-APLNE-----KTKNLIAYKELKLLK-DGAILINVGRGGIVNEKDLAKALDEKDIY--AGLDVLEKEPM  263 (311)
T ss_pred             hc--CCEEEEe-CCCCc-----hhhcccCHHHHHhCC-CCeEEEECCCccccCHHHHHHHHHcCCeE--EEEecCCCCCC
Confidence            32  4555432 12211     01112233333  33 3455556666678998886 778887554  332  222322


Q ss_pred             HHHHhccccceeeecCCcccCccccchhhHHHHhh
Q psy7896         443 VSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLAT  477 (718)
Q Consensus       443 ~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~  477 (718)
                      ..   +..+-.....|||..+||.+.++.|+..+.
T Consensus       264 ~~---~~pL~~~~~~~NvilTPH~a~~t~e~~~~~  295 (311)
T PRK08410        264 EK---NHPLLSIKNKEKLLITPHIAWASKEARKTL  295 (311)
T ss_pred             CC---CChhhccCCCCCEEECCccccCCHHHHHHH
Confidence            11   111111123589999999999988887664

>PRK14851 hypothetical protein; Provisional

Probab=91.04  E-value=0.29  Score=58.79  Aligned_cols=37  Identities=24%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|++++|+|||+|.+|..++..|...|. +++++|.|.
T Consensus        40 kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~   77 (679)
T PRK14851         40 RLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQ   77 (679)
T ss_pred             HHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCE
Confidence            4789999999999999999999999998 677777553

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=91.00  E-value=0.3  Score=54.81  Aligned_cols=37  Identities=24%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|+..+|.|||.|.+|..+|..|...|. +++++|.|.
T Consensus        39 ~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~   76 (392)
T PRK07878         39 RLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDV   76 (392)
T ss_pred             HHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCE
Confidence            4788999999999999999999999998 688888664

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.89  E-value=0.38  Score=53.17  Aligned_cols=40  Identities=28%  Similarity=0.322  Sum_probs=36.7

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |.-++||+|.|||.|+.|-..|--|.+.=.+|++.+-+|.
T Consensus       349 GPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~~e  388 (520)
T COG3634         349 GPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  388 (520)
T ss_pred             CcccCCceEEEECCCcchHHHHHhHHhhhheeeeeecchh
Confidence            5678999999999999999999999999999999987775

>KOG0024|consensus

Probab=90.89  E-value=0.33  Score=53.19  Aligned_cols=47  Identities=19%  Similarity=0.297  Sum_probs=39.8

Q ss_pred             HHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         257 DGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       257 ~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .+..|  ...-.|.+++|.|+||+|+-.-..++++|+ +|.++|..+.|.
T Consensus       160 HAcr~--~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rl  207 (354)
T KOG0024|consen  160 HACRR--AGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRL  207 (354)
T ss_pred             hhhhh--cCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHH
Confidence            34444  346789999999999999999889999998 999999888876

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=90.88  E-value=0.4  Score=59.90  Aligned_cols=36  Identities=28%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      -..|+|||.|+.|+.+|..|.+.|.+|+++|..+..
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~  198 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEA  198 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            467999999999999999999999999999986543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.87  E-value=0.8  Score=51.81  Aligned_cols=67  Identities=27%  Similarity=0.280  Sum_probs=46.2

Q ss_pred             ccC-cEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccH-HHHhhcCceec--C-HHHHhccCcEEEEcCC
Q psy7896         346 LAG-KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINA-LQASMEGYEVT--T-MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~G-ktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~a-l~a~~~G~~v~--~-Leell~~aDiIi~atg  412 (718)
                      +.+ |+|.|||.|.+|++.++.+...  |++|+++|..+... .+....|+.+.  . -.+.+.++|+||..++
T Consensus         4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~Spg   77 (438)
T PRK04663          4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNPG   77 (438)
T ss_pred             ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECCC
Confidence            456 8899999999999999999877  58899999755322 11122365541  1 1234578998887643

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=90.85  E-value=0.87  Score=48.07  Aligned_cols=77  Identities=25%  Similarity=0.229  Sum_probs=47.9

Q ss_pred             HHHHHHhCC--CEEEEEecCCccHHHHhhcCce--ecCHHHHhccCcEEEEcCCCCCC--cCHHHHhcCCCCeEEEEcCC
Q psy7896         363 CAQSLRLFG--SRVIVTEIDPINALQASMEGYE--VTTMEEAAKEGGIFVTTTGCKDI--IRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       363 vA~~l~~fG--a~Viv~d~dp~~al~a~~~G~~--v~~Leell~~aDiIi~atgt~~l--I~~e~l~~MK~gAiLIN~GR  436 (718)
                      +|+.|+..|  .+|+++|+++.....+...|..  ..+-.+.++++|+|++|+.-..+  +-.+....+++++++.++|.
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~S   80 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGS   80 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCC
Confidence            467777767  7999999998776666556653  22325788999999998753222  11233456899999999998


Q ss_pred             CCc
Q psy7896         437 FDC  439 (718)
Q Consensus       437 gd~  439 (718)
                      ...
T Consensus        81 vK~   83 (258)
T PF02153_consen   81 VKA   83 (258)
T ss_dssp             -CH
T ss_pred             CCH
Confidence            754

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>cd00704 MDH Malate dehydrogenase

Probab=90.84  E-value=0.31  Score=53.37  Aligned_cols=87  Identities=20%  Similarity=0.278  Sum_probs=54.6

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC-------EEEEEecCC--ccH------HHHh----hcCcee-cCHHHHhccCcEEE
Q psy7896         350 VAVVAGY-GDVGKGCAQSLRLFGS-------RVIVTEIDP--INA------LQAS----MEGYEV-TTMEEAAKEGGIFV  408 (718)
Q Consensus       350 tVGIIG~-G~IG~~vA~~l~~fGa-------~Viv~d~dp--~~a------l~a~----~~G~~v-~~Leell~~aDiIi  408 (718)
                      +|+|+|. |+||+.+|..+...|.       ++.++|+++  ...      +...    ..++.+ ....+.++.||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVV   81 (323)
T cd00704           2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAI   81 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEE
Confidence            7999999 9999999998875443       488888765  211      1100    011222 34668899999999


Q ss_pred             EcCCC---CCC------------cC--HHHHhcC-CCCeEEEEcCC
Q psy7896         409 TTTGC---KDI------------IR--GEHFLQM-RDDAIVCNIGH  436 (718)
Q Consensus       409 ~atgt---~~l------------I~--~e~l~~M-K~gAiLIN~GR  436 (718)
                      .+.|.   .++            +.  .+.+... +++++++.++.
T Consensus        82 itAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsN  127 (323)
T cd00704          82 LVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGN  127 (323)
T ss_pred             EeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            87542   111            11  1234455 57888888863

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=90.69  E-value=0.69  Score=48.35  Aligned_cols=91  Identities=21%  Similarity=0.160  Sum_probs=61.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-e-----cCHH----HHh--ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-V-----TTME----EAA--KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v-----~~Le----ell--~~aDiIi~atg  412 (718)
                      -.|.+|.|.|.|.+|+.+++.++.+|++ |+++..++.+.......|.. +     .++.    ++.  +..|+++.+.+
T Consensus       128 ~~~~~vlI~g~g~vg~~~~~la~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~vd~vld~~g  207 (312)
T cd08269         128 RAGKTVAVIGAGFIGLLFLQLAAAAGARRVIAIDRRPARLALARELGATEVVTDDSEAIVERVRELTGGAGADVVIEAVG  207 (312)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEecCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            4689999999999999999999999999 88876655332221222321 1     1222    222  24788887765


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .... -...+..|+++..++++|..
T Consensus       208 ~~~~-~~~~~~~l~~~g~~~~~g~~  231 (312)
T cd08269         208 HQWP-LDLAGELVAERGRLVIFGYH  231 (312)
T ss_pred             CHHH-HHHHHHHhccCCEEEEEccC
Confidence            4332 33567889999999998753

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=90.60  E-value=0.59  Score=51.07  Aligned_cols=88  Identities=18%  Similarity=0.208  Sum_probs=55.4

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCC--CEEEEEecCCccHH-HHhhcC---ceec------CHHHHhccCcEEEEcCCC---
Q psy7896         350 VAVVAGY-GDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QASMEG---YEVT------TMEEAAKEGGIFVTTTGC---  413 (718)
Q Consensus       350 tVGIIG~-G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a~~~G---~~v~------~Leell~~aDiIi~atgt---  413 (718)
                      +|+|||. |+||..+|-.+...|  .++.++|+++.... ....++   ..+.      ++.+.++.||+|+++.|.   
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~~~   80 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVPRK   80 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCCCC
Confidence            5899999 999999999886444  47889998772210 001122   1111      246789999999987542   


Q ss_pred             CCC------------cC--HHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDI------------IR--GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~l------------I~--~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++            +.  .+.+..-.++++++|++--
T Consensus        81 ~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNP  118 (312)
T TIGR01772        81 PGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNP  118 (312)
T ss_pred             CCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            111            11  1234444688888888763

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.55  E-value=0.65  Score=49.30  Aligned_cols=90  Identities=19%  Similarity=0.204  Sum_probs=60.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC-----H-HHHhccCcEEEEcCCCCCCcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT-----M-EEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~-----L-eell~~aDiIi~atgt~~lI~  418 (718)
                      -.|.+|.|+|.|.+|+.+++.++.+|++|++++.++.+.......|.. +..     . ...-+..|+++.+.+.... .
T Consensus       161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~~-~  239 (330)
T cd08245         161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLGADEVVDSGAELDEQAAAGGADVILVTVVSGAA-A  239 (330)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCcEEeccCCcchHHhccCCCCEEEECCCcHHH-H
Confidence            457899999999999999999999999999987665432222222321 111     0 0112347888776554332 3


Q ss_pred             HHHHhcCCCCeEEEEcCC
Q psy7896         419 GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GR  436 (718)
                      .+.+..|+.+..++++|.
T Consensus       240 ~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         240 EAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             HHHHHhcccCCEEEEECC
Confidence            456788899989988875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=90.54  E-value=0.75  Score=49.17  Aligned_cols=92  Identities=22%  Similarity=0.321  Sum_probs=62.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce---ec--CH----HHHh--ccCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE---VT--TM----EEAA--KEGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~---v~--~L----eell--~~aDiIi~atgt  413 (718)
                      ..|++|.|.|.|.+|+.+++.++.+|+ +|++++..+.+...+...|..   ..  +.    .++.  +..|+++.+.+.
T Consensus       166 ~~~~~vlI~g~g~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~dvvid~~~~  245 (344)
T cd08284         166 RPGDTVAVIGCGPVGLCAVLSAQVLGAARVFAVDPVPERLERAAALGAEPINFEDAEPVERVREATEGRGADVVLEAVGG  245 (344)
T ss_pred             ccCCEEEEECCcHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHhCCeEEecCCcCHHHHHHHHhCCCCCCEEEECCCC
Confidence            468999999999999999999999997 888886554433222223421   11  12    2222  247888887765


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ... -.+.+..|+++..++.+|..+
T Consensus       246 ~~~-~~~~~~~l~~~g~~v~~g~~~  269 (344)
T cd08284         246 AAA-LDLAFDLVRPGGVISSVGVHT  269 (344)
T ss_pred             HHH-HHHHHHhcccCCEEEEECcCC
Confidence            333 335678899999999988653

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=90.44  E-value=0.65  Score=51.28  Aligned_cols=85  Identities=12%  Similarity=0.140  Sum_probs=55.2

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhC-CCEEE-EEecCCc--cHHHH-hh--cC---ceec--CHHHHhccCcEEEEcCCCCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLF-GSRVI-VTEIDPI--NALQA-SM--EG---YEVT--TMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~--~al~a-~~--~G---~~v~--~Leell~~aDiIi~atgt~~  415 (718)
                      ++|+|+|. |.+|+.+++.|... +.++. +++.++.  +.+.. ..  .+   ..+.  +.++++.++|++++|+++. 
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-   79 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-   79 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence            47999998 99999999999987 67777 4454431  11111 10  11   1122  4566667899999998764 


Q ss_pred             CcCHHHHhcC-CCCeEEEEcC
Q psy7896         416 IIRGEHFLQM-RDDAIVCNIG  435 (718)
Q Consensus       416 lI~~e~l~~M-K~gAiLIN~G  435 (718)
                       ...+....+ +.|..+|+.+
T Consensus        80 -~s~~~~~~~~~~G~~VIDlS   99 (346)
T TIGR01850        80 -VSAELAPELLAAGVKVIDLS   99 (346)
T ss_pred             -HHHHHHHHHHhCCCEEEeCC
Confidence             333444433 6788888886

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=90.40  E-value=0.32  Score=53.41  Aligned_cols=89  Identities=16%  Similarity=0.150  Sum_probs=60.5

Q ss_pred             hhhhhhhHHHHhcCCccceEEEecCCcccccccccccchhhHHHH--------------Hhh-hcccccCCcEEEEEecC
Q psy7896         214 TTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRESLVDG--------------LKR-ATDIMLAGKVAVVAGYG  278 (718)
Q Consensus       214 ~sG~~rl~~~~~~g~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~--------------i~r-~t~~~~~Gk~vvViGyG  278 (718)
                      ..|+..+- .....+.+++|.++.+.......|...+.-=++.+.              +.+ ..+..+.|+++.|+|+|
T Consensus        77 ~~G~d~id-~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G  155 (330)
T PRK12480         77 TAGFDMYD-LDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTG  155 (330)
T ss_pred             ccccchhh-HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCC
Confidence            34555542 222335688999998877777766666521111111              111 12345799999999999


Q ss_pred             CCChhHHHHHHhcCCeEEEeecCch
Q psy7896         279 DVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       279 ~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+|..+|..|+.+|.+|.++|..+.
T Consensus       156 ~IG~~vA~~L~~~G~~V~~~d~~~~  180 (330)
T PRK12480        156 RIGAATAKIYAGFGATITAYDAYPN  180 (330)
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCChh
Confidence            9999999999999999999987664

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=90.40  E-value=0.47  Score=51.24  Aligned_cols=86  Identities=17%  Similarity=0.071  Sum_probs=52.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-h-cCceec------------CHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-M-EGYEVT------------TMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~-~G~~v~------------~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|+|.|.||.-+|-+|...|.+|+++++.+.. .++. . .|....            .-.+.....|+|++++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~-~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~   81 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQR-LAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY   81 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHH-HHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH
Confidence            57999999999999999999999999999875421 2211 1 133211            0112234679998887654


Q ss_pred             CCcC--HHHHhcCCCCeEEEEcC
Q psy7896         415 DIIR--GEHFLQMRDDAIVCNIG  435 (718)
Q Consensus       415 ~lI~--~e~l~~MK~gAiLIN~G  435 (718)
                      ++-.  +.....+.+++.++-.-
T Consensus        82 ~~~~al~~l~~~l~~~t~vv~lQ  104 (305)
T PRK05708         82 DAEPAVASLAHRLAPGAELLLLQ  104 (305)
T ss_pred             hHHHHHHHHHhhCCCCCEEEEEe
Confidence            4321  11223345666665553

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=90.39  E-value=0.75  Score=48.57  Aligned_cols=34  Identities=24%  Similarity=0.315  Sum_probs=31.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      -++.|+|.|++++.+++.++.+|.+|+++|.+|.
T Consensus       101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            5899999999999999999999999999986654

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=90.37  E-value=0.25  Score=49.25  Aligned_cols=50  Identities=36%  Similarity=0.465  Sum_probs=39.5

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch-hhhhhhhhhhhhh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI-NALQASMEGYELD  316 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~-r~v~AvaeGf~L~  316 (718)
                      +.+|+|+|+|||.-|..-|.-||..|+.|+|...... ....|..+||.+.
T Consensus         2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~   52 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM   52 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC
T ss_pred             cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec
Confidence            5789999999999999999999999999999887666 5566777888764

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK07877 hypothetical protein; Provisional

Probab=90.36  E-value=0.31  Score=58.84  Aligned_cols=36  Identities=25%  Similarity=0.304  Sum_probs=31.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp  381 (718)
                      .|+.++|+|||+| +|..+|..|.+.|.  +++++|.|.
T Consensus       104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~  141 (722)
T PRK07877        104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDT  141 (722)
T ss_pred             HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCE
Confidence            4789999999999 99999999999884  888887664

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=90.27  E-value=0.22  Score=46.39  Aligned_cols=85  Identities=14%  Similarity=0.145  Sum_probs=50.4

Q ss_pred             EEEEEe-cChhHHHHHHHHHh-CCCEEE-EEecCC-c-cHHHHh---hcCce---ecC-HHHHhccCcEEEEcCCCCCCc
Q psy7896         350 VAVVAG-YGDVGKGCAQSLRL-FGSRVI-VTEIDP-I-NALQAS---MEGYE---VTT-MEEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       350 tVGIIG-~G~IG~~vA~~l~~-fGa~Vi-v~d~dp-~-~al~a~---~~G~~---v~~-Leell~~aDiIi~atgt~~lI  417 (718)
                      +|+||| .|.+|+.+.++|.. ..++++ ++.+.+ . +.+...   ..++.   +.+ -.+.+..+|++++|+++.  .
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~--~   78 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG--A   78 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH--H
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh--H
Confidence            699999 99999999999976 444544 344444 1 111111   11221   212 224458999999997753  1


Q ss_pred             CHHHHh-cCCCCeEEEEcCC
Q psy7896         418 RGEHFL-QMRDDAIVCNIGH  436 (718)
Q Consensus       418 ~~e~l~-~MK~gAiLIN~GR  436 (718)
                      ..+... ..+.|..+|+.+.
T Consensus        79 ~~~~~~~~~~~g~~ViD~s~   98 (121)
T PF01118_consen   79 SKELAPKLLKAGIKVIDLSG   98 (121)
T ss_dssp             HHHHHHHHHHTTSEEEESSS
T ss_pred             HHHHHHHHhhCCcEEEeCCH
Confidence            223332 3588888888865

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=90.22  E-value=0.73  Score=50.74  Aligned_cols=89  Identities=16%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC---------------------------
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT---------------------------  396 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~---------------------------  396 (718)
                      -.|.+|.|.|. |.||..+++.++.+|++|++++.++.+...+...|.. +.+                           
T Consensus       192 ~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (393)
T cd08246         192 KPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRALGAEGVINRRDFDHWGVLPDVNSEAYTAWTKEARR  271 (393)
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHcCCCEEEcccccccccccccccchhhhhhhhccch
Confidence            45899999997 9999999999999999988887665443333333421 000                           


Q ss_pred             H----HHHhc---cCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         397 M----EEAAK---EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       397 L----eell~---~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      +    .++..   ..|+|+.+++.. .+ .+.+..|+++..++.+|.
T Consensus       272 ~~~~v~~l~~~~~g~d~vid~~g~~-~~-~~~~~~l~~~G~~v~~g~  316 (393)
T cd08246         272 FGKAIWDILGGREDPDIVFEHPGRA-TF-PTSVFVCDRGGMVVICAG  316 (393)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCchH-hH-HHHHHHhccCCEEEEEcc
Confidence            1    12222   478888777653 23 356788888888888765

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=90.21  E-value=1.4  Score=46.09  Aligned_cols=94  Identities=11%  Similarity=0.024  Sum_probs=63.7

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      ...|++|+|+|+|.++..=+..|...|..|+|+.............                   .++..+.++.+....
T Consensus        22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~-------------------~~~i~~~~r~~~~~d   82 (223)
T PRK05562         22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKK-------------------YGNLKLIKGNYDKEF   82 (223)
T ss_pred             ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHh-------------------CCCEEEEeCCCChHH
Confidence            4678999999999999998999999999999985443322211111                   011122233344456


Q ss_pred             ccCcEEEEEecCh--hHHHHHHHHHhCCCEEEEEe
Q psy7896         346 LAGKVAVVAGYGD--VGKGCAQSLRLFGSRVIVTE  378 (718)
Q Consensus       346 L~GktVGIIG~G~--IG~~vA~~l~~fGa~Viv~d  378 (718)
                      +.|..+.|.-.++  +-..+++.++..|.-|-+.|
T Consensus        83 l~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd  117 (223)
T PRK05562         83 IKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCS  117 (223)
T ss_pred             hCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcC
Confidence            7788888887775  67788888888777666654

>PRK06444 prephenate dehydrogenase; Provisional

Probab=90.19  E-value=0.48  Score=48.51  Aligned_cols=62  Identities=13%  Similarity=0.104  Sum_probs=45.5

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRD  427 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~  427 (718)
                      .+++|||. |+.|+.++++++..|..|.+                         +++|+|++++.-..+  .+.++.+. 
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~-------------------------~~~DlVilavPv~~~--~~~i~~~~-   52 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI-------------------------KKADHAFLSVPIDAA--LNYIESYD-   52 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhCCCEEEE-------------------------CCCCEEEEeCCHHHH--HHHHHHhC-
Confidence            37999999 99999999999999998852                         368999998764322  23344443 


Q ss_pred             CeEEEEcCCCCc
Q psy7896         428 DAIVCNIGHFDC  439 (718)
Q Consensus       428 gAiLIN~GRgd~  439 (718)
                       .+++++|.-..
T Consensus        53 -~~v~Dv~SvK~   63 (197)
T PRK06444         53 -NNFVEISSVKW   63 (197)
T ss_pred             -CeEEeccccCH
Confidence             26778887654

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=90.04  E-value=0.69  Score=56.57  Aligned_cols=64  Identities=19%  Similarity=0.205  Sum_probs=46.4

Q ss_pred             cEEEEEecChhHHHH-HHHHHhCCCEEEEEecCCccHHHHh-hcCceec--CHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGC-AQSLRLFGSRVIVTEIDPINALQAS-MEGYEVT--TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~v-A~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v~--~Leell~~aDiIi~atg  412 (718)
                      +++.|||.|.+|++. |+.|+..|++|+++|..+....... ..|..+.  .-.+.+..+|+||..++
T Consensus         5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~Spg   72 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSS   72 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCC
Confidence            469999999999998 9999999999999997654322211 2355442  23355678999997644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	718
3d64_A	494	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		7e-84
3d64_A	494	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		4e-39
3n58_A	464	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		1e-80
3n58_A	464	Crystal Structure Of S-Adenosyl-L-Homocysteine Hydr		1e-34
3ond_A	488	Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Ho		3e-79
3ond_A	488	Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Ho		2e-38
1li4_A	432	Human S-Adenosylhomocysteine Hydrolase Complexed Wi		2e-77
1li4_A	432	Human S-Adenosylhomocysteine Hydrolase Complexed Wi		3e-53
1li4_A	432	Human S-Adenosylhomocysteine Hydrolase Complexed Wi		3e-45
3nj4_A	435	Fluoro-Neplanocin A In Human S-Adenosylhomocysteine		2e-77
3nj4_A	435	Fluoro-Neplanocin A In Human S-Adenosylhomocysteine		3e-53
3nj4_A	435	Fluoro-Neplanocin A In Human S-Adenosylhomocysteine		3e-45
1b3r_A	431	Rat Liver S-Adenosylhomocystein Hydrolase Length =		3e-76
1b3r_A	431	Rat Liver S-Adenosylhomocystein Hydrolase Length =		1e-53
1b3r_A	431	Rat Liver S-Adenosylhomocystein Hydrolase Length =		9e-47
1xwf_A	431	K185n Mutated S-adenosylhomocysteine Hydrolase Leng		9e-76
1xwf_A	431	K185n Mutated S-adenosylhomocysteine Hydrolase Leng		1e-53
1xwf_A	431	K185n Mutated S-adenosylhomocysteine Hydrolase Leng		1e-46
1d4f_A	431	Crystal Structure Of Recombinant Rat-Liver D244e Mu		9e-76
1d4f_A	431	Crystal Structure Of Recombinant Rat-Liver D244e Mu		3e-53
1d4f_A	431	Crystal Structure Of Recombinant Rat-Liver D244e Mu		9e-47
1v8b_A	479	Crystal Structure Of A Hydrolase Length = 479		1e-71
1v8b_A	479	Crystal Structure Of A Hydrolase Length = 479		2e-31
1a7a_A	432	Structure Of Human Placental S-adenosylhomocysteine		7e-68
1a7a_A	432	Structure Of Human Placental S-adenosylhomocysteine		4e-61
1a7a_A	432	Structure Of Human Placental S-adenosylhomocysteine		3e-50
1a7a_A	432	Structure Of Human Placental S-adenosylhomocysteine		5e-43
3g1u_A	437	Crystal Structure Of Leishmania Major S- Adenosylho		1e-62
3g1u_A	437	Crystal Structure Of Leishmania Major S- Adenosylho		1e-55
3g1u_A	437	Crystal Structure Of Leishmania Major S- Adenosylho		2e-43
3g1u_A	437	Crystal Structure Of Leishmania Major S- Adenosylho		3e-43
3h9u_A	436	S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypa		2e-61
3h9u_A	436	S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypa		4e-53
3h9u_A	436	S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypa		9e-45
3h9u_A	436	S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypa		9e-44
3dhy_A	495	Crystal Structures Of Mycobacterium Tuberculosis S-		3e-59
3dhy_A	495	Crystal Structures Of Mycobacterium Tuberculosis S-		7e-37
3ce6_A	494	Crystal Structure Of Mycobacterium Tuberculosis S-A		3e-59
3ce6_A	494	Crystal Structure Of Mycobacterium Tuberculosis S-A		7e-37
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		4e-56
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		3e-26
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		1e-24
3gvp_A	435	Human Sahh-Like Domain Of Human Adenosylhomocystein		2e-23
3mtg_A	444	Crystal Structure Of Human S-Adenosyl Homocysteine		9e-49
3mtg_A	444	Crystal Structure Of Human S-Adenosyl Homocysteine		3e-47
3mtg_A	444	Crystal Structure Of Human S-Adenosyl Homocysteine		5e-26

>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Burkholderia Pseudomallei Length = 494

Iteration: 1
 Score =  308 bits (789), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 168/315 (53%), Positives = 207/315 (65%), Gaps = 28/315 (8%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA WGRK + +AE EMPGL+ +R +Y AQ+ LKGARIAG LHMT+QT VLIETL 
Sbjct: 37  VADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLK 96
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGA+V+W+SCNIFSTQDH              +KGE+ +EY     +   +P+G+  NM
Sbjct: 97  ALGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANM 156
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           ILDDGGD T L+          I G   E    V           +  P      ++ K 
Sbjct: 157 ILDDGGDATLLL----------ILGSKAEKDRSV-----------IARPTNEEEVALFKS 195
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
           +   L+  G         Y + L+ I+G++EETTTGVH LY+M K+ +L  PA NVNDSV
Sbjct: 196 IERHLEIDGSW-------YSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSV 248
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
           TKSKFDNLYGCRESLVDG+KRATD+M+AGK+AVVAGYGDVGKGCAQSLR  G+ V VTEI
Sbjct: 249 TKSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEI 308
Query: 301 DPINALQASMEGYEL 315
           DPI ALQA+MEGY +
Sbjct: 309 DPICALQAAMEGYRV 323

>pdb|3D64|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Burkholderia Pseudomallei Length = 494

Iteration: 1
 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 72/121 (59%), Positives = 91/121 (75%)
Query: 598 TDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIE 657
           +  +Y W   +  VD    P+G  +ILLAEGRLVNLGCA GHPSFVMSNSFTNQ LAQIE
Sbjct: 374 STRQYQWENIKPQVDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIE 433
Query: 658 LWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYR 717
           L+T+  +Y   VY+LPK LDE+VA LHL  +G +L++L++DQA Y+G+   GP+KPDHYR
Sbjct: 434 LFTRGGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYR 493
Query: 718 Y 718
           Y
Sbjct: 494 Y 494

>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Brucella Melitensis In Ternary Complex With Nad And Adenosine, Orthorhombic Form Length = 464

Iteration: 1
 Score =  297 bits (761), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 162/318 (50%), Positives = 200/318 (62%), Gaps = 38/318 (11%)
Query: 3   DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
           DI LA+WGRK + +AE EMPGLMA R ++G  + LKGARI+G LHMT+QTAVLIETL  L
Sbjct: 9   DISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVL 68
Query: 63  GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
           GAEV+W+SCNIFSTQDH               KGET EEY    +Q   +PDG+P NMIL
Sbjct: 69  GAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNMIL 128
Query: 123 DDGGDLTNLV-----HEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 177
           DDGGD T  +      E     LS  +   EE       L+   K+     P        
Sbjct: 129 DDGGDATMYILIGARAEAGEDVLSNPQSEEEEV------LFAQIKKRMAATPGF------ 176
Query: 178 TKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVN 237
                                + +  + I+G++EETTTGV+ LY++ K+  L  PAINVN
Sbjct: 177 ---------------------FTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVN 215
Query: 238 DSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV 297
           DSVTKSKFDN YGC+ESLVDG++R TD+M+AGKVAVV GYGDVGKG AQSL   G+RV V
Sbjct: 216 DSVTKSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKV 275
Query: 298 TEIDPINALQASMEGYEL 315
           TE+DPI ALQA+M+G+E+
Sbjct: 276 TEVDPICALQAAMDGFEV 293

>pdb|3N58|A Chain A, Crystal Structure Of S-Adenosyl-L-Homocysteine Hydrolase From Brucella Melitensis In Ternary Complex With Nad And Adenosine, Orthorhombic Form Length = 464

Iteration: 1
 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/115 (59%), Positives = 85/115 (73%)
Query: 604 WCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS 663
           W   +  VD    P+G  +ILL+EGRL+NLG A GHPSFVMS SFTNQVL QIEL+T+  
Sbjct: 350 WTNVKPQVDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTD 409
Query: 664 QYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            Y   VY+LPK LDE+VA LHL+ LG KLT L+E+QA Y+G+  +GP+K +HYRY
Sbjct: 410 AYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 464

>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Homocysteine Hydrolase In Complex With Adenosine Length = 488

Iteration: 1
 Score =  293 bits (749), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 164/313 (52%), Positives = 203/313 (64%), Gaps = 22/313 (7%)
Query: 3   DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
           D+  A++GR  I +AE EMPGLMA R ++G  +  KGA+I G LHMT+QTAVLIETL  L
Sbjct: 21  DMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTAL 80
Query: 63  GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
           GAEV+W SCNIFSTQDH              WKGET +EY WC E+ L +  G   ++I+
Sbjct: 81  GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIV 140
Query: 123 DDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLN 182
           DDGGD T L+HE          G+  E       +Y+  K  +   P    N      L+
Sbjct: 141 DDGGDTTLLIHE----------GVKAE------EIYE--KSGQFPDPDSTDNAEFKIVLS 182
Query: 183 MILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 242
           +I +  G  T+   ++Y +    + G+SEETTTGV  LY+M     L  PAINVNDSVTK
Sbjct: 183 IIKE--GLKTD--PKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTK 238
Query: 243 SKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
           SKFDNLYGCR SL DGL RATD+M+AGKVAVVAGYGDVGKGCA +L+  G+RVIVTEIDP
Sbjct: 239 SKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP 298
Query: 303 INALQASMEGYEL 315
           I ALQA+MEG ++
Sbjct: 299 ICALQATMEGLQV 311

>pdb|3OND|A Chain A, Crystal Structure Of Lupinus Luteus S-Adenosyl-L-Homocysteine Hydrolase In Complex With Adenosine Length = 488

Iteration: 1
 Score =  157 bits (396), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 89/110 (80%), Gaps = 3/110 (2%)
Query: 612 DRYTLPNGNH-IILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVG 668
           DR+  P  N  II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW + S  +Y   
Sbjct: 379 DRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKK 438
Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           VY+LPK LDE+VAALHLE LG KLTKL++DQA Y+ +P+EGPYKP HYRY
Sbjct: 439 VYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 488

>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With Neplanocin Length = 432

Iteration: 1
 Score =  287 bits (734), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/315 (52%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 9   VADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLV 68
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEVQWSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 69  TLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNM 127
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           ILDDGGDLTNL+H KYPQ L  IRGISEETTTGVHNLYKM     L VPAINVNDSVTK 
Sbjct: 128 ILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 186
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
                                    + G  E    G+     +    K+ V A       
Sbjct: 187 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 219
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
                D   GC ++L                    G+G              +RVI+TEI
Sbjct: 220 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 244
Query: 301 DPINALQASMEGYEL 315
           DPINALQA+MEGYE+
Sbjct: 245 DPINALQAAMEGYEV 259

>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With Neplanocin Length = 432

Iteration: 1
 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA +
Sbjct: 208 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQ 267
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 268 EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 325

>pdb|1LI4|A Chain A, Human S-Adenosylhomocysteine Hydrolase Complexed With Neplanocin Length = 432

Iteration: 1
 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 91/108 (84%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VDRY L NG  IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT   +YPVGV+
Sbjct: 325 VDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 384
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            LPKKLDE VA  HL  L VKLTKLTE QA+YLG+  +GP+KPDHYRY
Sbjct: 385 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY 432

>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine Hydrolase Length = 435

Iteration: 1
 Score =  286 bits (733), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 164/315 (52%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 12  VADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLV 71
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEVQWSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 72  TLGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNM 130
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           ILDDGGDLTNL+H KYPQ L  IRGISEETTTGVHNLYKM     L VPAINVNDSVTK 
Sbjct: 131 ILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 189
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
                                    + G  E    G+     +    K+ V A       
Sbjct: 190 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 222
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
                D   GC ++L                    G+G              +RVI+TEI
Sbjct: 223 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 247
Query: 301 DPINALQASMEGYEL 315
           DPINALQA+MEGYE+
Sbjct: 248 DPINALQAAMEGYEV 262

>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine Hydrolase Length = 435

Iteration: 1
 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA +
Sbjct: 211 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQ 270
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 271 EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 328

>pdb|3NJ4|A Chain A, Fluoro-Neplanocin A In Human S-Adenosylhomocysteine Hydrolase Length = 435

Iteration: 1
 Score =  180 bits (456), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 84/108 (77%), Positives = 91/108 (84%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VDRY L NG  IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT   +YPVGV+
Sbjct: 328 VDRYRLKNGRRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 387
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            LPKKLDE VA  HL  L VKLTKLTE QA+YLG+  +GP+KPDHYRY
Sbjct: 388 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDGPFKPDHYRY 435

>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase Length = 431

Iteration: 1
 Score =  283 bits (723), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 163/315 (51%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA WGRK + +AENEMPGLM +R  Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 8   VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 67
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEV+WSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 68  ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           ILDDGGDLTNL+H K+PQ LS IRGISEETTTGVHNLYKM     L VPAINVNDSVTK 
Sbjct: 127 ILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 185
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
                                    + G  E    G+     +    K+ V A       
Sbjct: 186 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 218
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
                D   GC ++L                    G+G              +RVI+TEI
Sbjct: 219 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 243
Query: 301 DPINALQASMEGYEL 315
           DPINALQA+MEGYE+
Sbjct: 244 DPINALQAAMEGYEV 258

>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase Length = 431

Iteration: 1
 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA K
Sbjct: 207 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACK 266
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 267 EGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 324

>pdb|1B3R|A Chain A, Rat Liver S-Adenosylhomocystein Hydrolase Length = 431

Iteration: 1
 Score =  185 bits (469), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VDRY L NG+ IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT   +YPVGV+
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 383
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            LPKKLDE VA  HL  L VKLTKLTE QA+YLG+PI GP+KPDHYRY
Sbjct: 384 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431

>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  281 bits (719), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 164/315 (52%), Positives = 186/315 (59%), Gaps = 64/315 (20%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA WGRK + +AENEMPGLM +R  Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 8   VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 67
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEV+WSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 68  ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           ILDDGGDLTNL+H K+PQ LS IRGISEETTTGVHNLYKM     L VPAINVNDSVT  
Sbjct: 127 ILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVT-- 184
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
            N   D+                  + G  E    G+     +    K+ V A       
Sbjct: 185 -NSKFDN------------------LYGCRESLIDGIKRATDVMIAGKVAVVA------- 218
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
                D   GC ++L                    G+G              +RVI+TEI
Sbjct: 219 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 243
Query: 301 DPINALQASMEGYEL 315
           DPINALQA+MEGYE+
Sbjct: 244 DPINALQAAMEGYEV 258

>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  208 bits (529), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA K
Sbjct: 207 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACK 266
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 267 EGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 324

>pdb|1XWF|A Chain A, K185n Mutated S-adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  184 bits (468), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VDRY L NG+ IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT   +YPVGV+
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 383
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            LPKKLDE VA  HL  L VKLTKLTE QA+YLG+PI GP+KPDHYRY
Sbjct: 384 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431

>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S- Adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  281 bits (719), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 162/315 (51%), Positives = 184/315 (58%), Gaps = 64/315 (20%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA WGRK + +AENEMPGLM +R  Y A K LKGARIAGCLHMTV+TAVLIETL+
Sbjct: 8   VADIGLAAWGRKALDIAENEMPGLMRMREMYSASKPLKGARIAGCLHMTVETAVLIETLV 67
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEV+WSSCNIFSTQDH              WKGETDEEY+WCIEQTL F DG PLNM
Sbjct: 68  ALGAEVRWSSCNIFSTQDHAAAAIAKAGIPVFAWKGETDEEYLWCIEQTLHFKDG-PLNM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKP 180
           ILDDGGDLTNL+H K+PQ LS IRGISEETTTGVHNLYKM     L VPAINVNDSVTK 
Sbjct: 127 ILDDGGDLTNLIHTKHPQLLSGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK- 185
Query: 181 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV 240
                                    + G  E    G+     +    K+ V A       
Sbjct: 186 --------------------SKFDNLYGCRESLIDGIKRATDVMIAGKVAVVA------- 218
Query: 241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI 300
                D   GC ++L                    G+G              +RVI+TEI
Sbjct: 219 --GYGDVGKGCAQAL-------------------RGFG--------------ARVIITEI 243
Query: 301 DPINALQASMEGYEL 315
           +PINALQA+MEGYE+
Sbjct: 244 EPINALQAAMEGYEV 258

>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S- Adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  206 bits (524), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 96/118 (81%), Positives = 108/118 (91%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEI+PINALQA+MEGYEVTTM+EA K
Sbjct: 207 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIEPINALQAAMEGYEVTTMDEACK 266
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 267 EGNIFVTTTGCVDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 324

>pdb|1D4F|A Chain A, Crystal Structure Of Recombinant Rat-Liver D244e Mutant S- Adenosylhomocysteine Hydrolase Length = 431

Iteration: 1
 Score =  185 bits (469), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 86/108 (79%), Positives = 93/108 (86%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VDRY L NG+ IILLAEGRLVNLGCAMGHPSFVMSNSFTNQV+AQIELWT   +YPVGV+
Sbjct: 324 VDRYLLKNGHRIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVH 383
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            LPKKLDE VA  HL  L VKLTKLTE QA+YLG+PI GP+KPDHYRY
Sbjct: 384 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMPINGPFKPDHYRY 431

>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase Length = 479

Iteration: 1
 Score =  267 bits (683), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/351 (45%), Positives = 210/351 (59%), Gaps = 51/351 (14%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           + DI LA +G+  + ++ENEMPGLM +R +YG  + LK A+I GCLHMTV+ A+LIETL 
Sbjct: 8   VKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQ 67
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXX-XXXXXXXWKGETDEEYVWCIEQTLVFPDGKP-- 117
           +LGA+++W SCNI+ST D+               WK ET EEY WC+E  L + DG    
Sbjct: 68  KLGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNG 127
Query: 118 LNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKE-NKLGVPAINVNDS 176
            +MI+DDGGD T LVH          +G+  E         K+++E N L  P    N+ 
Sbjct: 128 PDMIVDDGGDATLLVH----------KGVEYE---------KLYEEKNILPDPEKAKNEE 168
Query: 177 ----VTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVP 232
               +T   N IL +    TN+          +I G+SEETTTGV  L KM K+N+L   
Sbjct: 169 ERCFLTLLKNSILKNPKKWTNIA--------KKIIGVSEETTTGVLRLKKMDKQNELLFT 220
Query: 233 AINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG 292
           AINVND+VTK K+DN+YGCR SL DGL RATD +++GK+ V+ GYGDVGKGCA S++  G
Sbjct: 221 AINVNDAVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLG 280
Query: 293 SRVIVTEIDPINALQASMEGYE---LDE-------------EVAALHLEHL 327
           +RV +TEIDPI A+QA MEG+    LDE              V  + LEHL
Sbjct: 281 ARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTGNVDVIKLEHL 331

>pdb|1V8B|A Chain A, Crystal Structure Of A Hydrolase Length = 479

Iteration: 1
 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 62/110 (56%), Positives = 80/110 (72%), Gaps = 2/110 (1%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKH--SQYPVG 668
           VDR TLPNGN II+LA GRL+NLGCA GHP+FVMS SF NQ  AQ++LW     ++Y   
Sbjct: 370 VDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENK 429
Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           VY+LPK LDE+VA  HL+ L   LT+L ++Q ++LG+   GP+K + YRY
Sbjct: 430 VYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479

>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine Hydrolase: Determination Of A 30 Selenium Atom Substructure From Data At A Single Wavelength Length = 432

Iteration: 1
 Score =  255 bits (651), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 127/179 (70%), Positives = 136/179 (75%), Gaps = 1/179 (0%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +ADI LA WGRK + +AENE PGL   R +Y A K LKGARIAGCLH TV+TAVLIETL+
Sbjct: 9   VADIGLAAWGRKALDIAENEXPGLXRXRERYSASKPLKGARIAGCLHXTVETAVLIETLV 68
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNM 120
            LGAEVQWSSCNIFSTQ+H              WKGETDEEY+WCIEQTL F DG PLN 
Sbjct: 69  TLGAEVQWSSCNIFSTQNHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDG-PLNX 127
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           ILDDGGDLTNL+H KYPQ L  IRGISEETTTGVHNLYK      L VPAINVNDSVTK
Sbjct: 128 ILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKXXANGILKVPAINVNDSVTK 186

>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine Hydrolase: Determination Of A 30 Selenium Atom Substructure From Data At A Single Wavelength Length = 432

Iteration: 1
 Score =  233 bits (593), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 121/136 (88%)
Query: 180 PLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDS 239
           PLN ILDDGGDLTNL+H KYPQ L  IRGISEETTTGVHNLYK      L VPAINVNDS
Sbjct: 124 PLNXILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKXXANGILKVPAINVNDS 183
Query: 240 VTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE 299
           VTKSKFDNLYGCRESL+DG+KRATD+ +AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TE
Sbjct: 184 VTKSKFDNLYGCRESLIDGIKRATDVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITE 243
Query: 300 IDPINALQASMEGYEL 315
           IDPINALQA+ EGYE+
Sbjct: 244 IDPINALQAAXEGYEV 259

>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine Hydrolase: Determination Of A 30 Selenium Atom Substructure From Data At A Single Wavelength Length = 432

Iteration: 1
 Score =  196 bits (499), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/118 (77%), Positives = 104/118 (88%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+ +AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+ EGYEVTT +EA +
Sbjct: 208 DVXIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAXEGYEVTTXDEACQ 267
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           EG IFVTTTGC DII G HF Q +DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 268 EGNIFVTTTGCIDIILGRHFEQXKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 325

>pdb|1A7A|A Chain A, Structure Of Human Placental S-adenosylhomocysteine Hydrolase: Determination Of A 30 Selenium Atom Substructure From Data At A Single Wavelength Length = 432

Iteration: 1
 Score =  172 bits (437), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 82/108 (75%), Positives = 87/108 (80%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VDRY L NG  IILLAEGRLVNLGCA GHPSFV SNSFTNQV AQIELWT   +YPVGV+
Sbjct: 325 VDRYRLKNGRRIILLAEGRLVNLGCAXGHPSFVXSNSFTNQVXAQIELWTHPDKYPVGVH 384
Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            LPKKLDE VA  HL  L VKLTKLTE QA+YLG   +GP+KPDHYRY
Sbjct: 385 FLPKKLDEAVAEAHLGKLNVKLTKLTEKQAQYLGXSCDGPFKPDHYRY 432

>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S- Adenosylhomocysteine Hydrolase Length = 437

Iteration: 1
 Score =  237 bits (605), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/179 (67%), Positives = 135/179 (75%), Gaps = 3/179 (1%)
Query: 3   DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
           DI LAEWGRK I +AENEMPGLM LRR+YG  + LKGA+IAGCLHMTVQTAVLIETL  L
Sbjct: 8   DISLAEWGRKAIELAENEMPGLMELRREYGPSQPLKGAKIAGCLHMTVQTAVLIETLKAL 67
Query: 63  GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL--VFPDGKPLNM 120
           GAE++WSSCNIFSTQD+              WKGETDEEY WCI QT+     DG P NM
Sbjct: 68  GAELRWSSCNIFSTQDNAAAAIAKTGVPVFAWKGETDEEYEWCIAQTVKGFSGDGLP-NM 126
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           ILDDGGDLTNLV ++YP+ + +I GISEETTTGV NLYK   +  L + AINVNDSVTK
Sbjct: 127 ILDDGGDLTNLVIDRYPELVPKIFGISEETTTGVKNLYKRLSKGNLPISAINVNDSVTK 185

>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S- Adenosylhomocysteine Hydrolase Length = 437

Iteration: 1
 Score =  214 bits (545), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/134 (74%), Positives = 116/134 (86%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
           NMILDDGGDLTNLV ++YP+ + +I GISEETTTGV NLYK   +  L + AINVNDSVT
Sbjct: 125 NMILDDGGDLTNLVIDRYPELVPKIFGISEETTTGVKNLYKRLSKGNLPISAINVNDSVT 184
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
           KSKFDNLYGCRESLVDG+KRATD+M+AGK   V GYGDVGKGCA +LR FG+RV+VTE+D
Sbjct: 185 KSKFDNLYGCRESLVDGIKRATDVMIAGKTCCVCGYGDVGKGCAAALRAFGARVVVTEVD 244
Query: 302 PINALQASMEGYEL 315
           PINALQASMEGY++
Sbjct: 245 PINALQASMEGYQV 258

>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S- Adenosylhomocysteine Hydrolase Length = 437

Iteration: 1
 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 108/159 (67%), Gaps = 7/159 (4%)
Query: 302 PINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGK 361
           PI+A+        +++ V     ++L      L +   +  D+M+AGK   V GYGDVGK
Sbjct: 173 PISAIN-------VNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTCCVCGYGDVGK 225
Query: 362 GCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421
           GCA +LR FG+RV+VTE+DPINALQASMEGY+V  +E+   +  IFVTTTG  DII  +H
Sbjct: 226 GCAAALRAFGARVVVTEVDPINALQASMEGYQVALVEDVMADAHIFVTTTGNDDIITSDH 285
Query: 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           F  MRDDAIVCNIGHFD EIQV WL+ NA E V +KPQV
Sbjct: 286 FPHMRDDAIVCNIGHFDTEIQVGWLEANAKEHVEIKPQV 324

>pdb|3G1U|A Chain A, Crystal Structure Of Leishmania Major S- Adenosylhomocysteine Hydrolase Length = 437

Iteration: 1
 Score =  173 bits (439), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 93/114 (81%), Gaps = 6/114 (5%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTK--HSQYP-- 666
           VDRYT+ NG HIILLA+GRLVNLGCA GHPSFVMSNSFTNQVLAQIELW+   + +YP  
Sbjct: 324 VDRYTMENGRHIILLAKGRLVNLGCASGHPSFVMSNSFTNQVLAQIELWSNRDNGKYPRG 383
Query: 667 --VGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
              GV+ LPK LDE+VAALHL H+G KLTKLT  QA+Y+  P+ GP+KPDHYRY
Sbjct: 384 DKAGVFFLPKALDEKVAALHLAHVGAKLTKLTPKQAEYINCPVNGPFKPDHYRY 437

>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma Brucei Length = 436

Iteration: 1
 Score =  233 bits (595), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 115/179 (64%), Positives = 137/179 (76%), Gaps = 3/179 (1%)
Query: 3   DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
           DI LAEWGR+ + +AENEMPGLM LRR+YG  K LKGA+IAGCLHMT+QTAVLIETL+EL
Sbjct: 7   DISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVEL 66
Query: 63  GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL--VFPDGKPLNM 120
           GAEV+W+SCNIFSTQDH              WKGET+EEY+WC++QTL     DG P NM
Sbjct: 67  GAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYP-NM 125
Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           +LDDGGDLTN V ++  +   +I G+SEETTTGV NLYK  +  KL +PA+NVNDSVTK
Sbjct: 126 LLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTK 184

>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma Brucei Length = 436

Iteration: 1
 Score =  206 bits (523), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 115/134 (85%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
           NM+LDDGGDLTN V ++  +   +I G+SEETTTGV NLYK  +  KL +PA+NVNDSVT
Sbjct: 124 NMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVT 183
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
           KSKFDNLYGCRESLVDG+KRATD+M+AGK A V GYGDVGKGCA +LR FG+RV+VTE+D
Sbjct: 184 KSKFDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVD 243
Query: 302 PINALQASMEGYEL 315
           PINALQA+MEGY++
Sbjct: 244 PINALQAAMEGYQV 257

>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma Brucei Length = 436

Iteration: 1
 Score =  178 bits (451), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 97/118 (82%)
Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGK A V GYGDVGKGCA +LR FG+RV+VTE+DPINALQA+MEGY+V  +E+  +
Sbjct: 206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVE 265
Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           E  IFVTTTG  DII  EHF +MRDDAIVCNIGHFD EIQV+WL  NA E+V VKPQV
Sbjct: 266 EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQV 323

>pdb|3H9U|A Chain A, S-Adenosyl Homocysteine Hydrolase (Sahh) From Trypanosoma Brucei Length = 436

Iteration: 1
 Score =  175 bits (443), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 92/114 (80%), Gaps = 6/114 (5%)
Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVG 668
           VDRYT+ NG HIILLAEGRLVNLGCA GHPSFVMSNSF NQVLAQIELWT     +YP G
Sbjct: 323 VDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRG 382
Query: 669 ----VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
               VY LPKKLDE+VAALHL  LG KLTKLT  QA+Y+  P++GP+KPDHYRY
Sbjct: 383 AKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHYRY 436

>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis S-Adenosyl- Homocysteine Hydrolase In Ternary Complex With Substrate An Inhibitors Length = 495

Iteration: 1
 Score =  226 bits (577), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/362 (40%), Positives = 181/362 (50%), Gaps = 110/362 (30%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LA++GRK + +AE+EMPGLM+LRR+Y   + LKGARI+G LHMTVQTAVLIETL 
Sbjct: 23  IADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLT 82
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXX---------XXXXXXXWKGETDEEYVWCIEQTLV 111
            LGAEV+W+SCNIFSTQDH                       WKGET EEY W  EQ L 
Sbjct: 83  ALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLT 142
Query: 112 FPD-GKPLNMILDDGGDLTNLV-------------------------------------H 133
           +PD  KP NMILDDGGD T LV                                      
Sbjct: 143 WPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVFLNLLRTRFETDK 202
Query: 134 EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTN 193
           +K+ +    ++G++EETTTGV  LY+      L  PAINVNDSVTK             +
Sbjct: 203 DKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTK-------------S 249
Query: 194 LVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRE 253
               KY    S I GI+  T                                D L G ++
Sbjct: 250 KFDNKYGTRHSLIDGINRGT--------------------------------DALIGGKK 277
Query: 254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY 313
            L                  + GYGDVGKGCA++++  G+RV VTEIDPINALQA MEG+
Sbjct: 278 VL------------------ICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGF 319
Query: 314 EL 315
           ++
Sbjct: 320 DV 321

>pdb|3DHY|A Chain A, Crystal Structures Of Mycobacterium Tuberculosis S-Adenosyl- Homocysteine Hydrolase In Ternary Complex With Substrate An Inhibitors Length = 495

Iteration: 1
 Score =  152 bits (384), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 611 VDRYTLPN-GNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGV 669
           VD +T  + G  II+L+EGRL+NLG A GHPSFVMSNSF NQ +AQIELWTK+ +Y   V
Sbjct: 387 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEYDNEV 446
Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           Y LPK LDE+VA +H+E LG  LTKLT++QA+YLG+ +EGPYKPDHYRY
Sbjct: 447 YRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 495

>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex With Nad And Adenosine Length = 494

Iteration: 1
 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 146/362 (40%), Positives = 181/362 (50%), Gaps = 110/362 (30%)
Query: 1   MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL 60
           +AD+ LA++GRK + +AE+EMPGLM+LRR+Y   + LKGARI+G LHMTVQTAVLIETL 
Sbjct: 22  IADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLT 81
Query: 61  ELGAEVQWSSCNIFSTQDHXXXXXXX---------XXXXXXXWKGETDEEYVWCIEQTLV 111
            LGAEV+W+SCNIFSTQDH                       WKGET EEY W  EQ L 
Sbjct: 82  ALGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLT 141
Query: 112 FPD-GKPLNMILDDGGDLTNLV-------------------------------------H 133
           +PD  KP NMILDDGGD T LV                                      
Sbjct: 142 WPDPDKPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVFLNLLRTRFETDK 201
Query: 134 EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTN 193
           +K+ +    ++G++EETTTGV  LY+      L  PAINVNDSVTK             +
Sbjct: 202 DKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTK-------------S 248
Query: 194 LVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYGCRE 253
               KY    S I GI+  T                                D L G ++
Sbjct: 249 KFDNKYGTRHSLIDGINRGT--------------------------------DALIGGKK 276
Query: 254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY 313
            L                  + GYGDVGKGCA++++  G+RV VTEIDPINALQA MEG+
Sbjct: 277 VL------------------ICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGF 318
Query: 314 EL 315
           ++
Sbjct: 319 DV 320

>pdb|3CE6|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis S-Adenosyl-L- Homocysteine Hydrolase In Ternary Complex With Nad And Adenosine Length = 494

Iteration: 1
 Score =  152 bits (384), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 72/109 (66%), Positives = 88/109 (80%), Gaps = 1/109 (0%)
Query: 611 VDRYTLPN-GNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGV 669
           VD +T  + G  II+L+EGRL+NLG A GHPSFVMSNSF NQ +AQIELWTK+ +Y   V
Sbjct: 386 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEYDNEV 445
Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           Y LPK LDE+VA +H+E LG  LTKLT++QA+YLG+ +EGPYKPDHYRY
Sbjct: 446 YRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 494

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  216 bits (550), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 123/313 (39%), Positives = 170/313 (54%), Gaps = 64/313 (20%)
Query: 3   DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
           +IK AE+GR+ I +AE EMP LMALR++   +K L GA+I GC H+T QTAVL+ETL  L
Sbjct: 18  NIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGAL 77
Query: 63  GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
           GA+ +W++CNI+ST +               WKGE+++++ WCI++ +     +P NMIL
Sbjct: 78  GAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQP-NMIL 136
Query: 123 DDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPLN 182
           DDGGDLT+ +++KYP    +I+GI EE+ TGVH LY++ K  KL VPA+NVNDSVTK   
Sbjct: 137 DDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTK--- 193
Query: 183 MILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 242
                             Q    +    E    G+                        K
Sbjct: 194 ------------------QKFDNLYCCRESILDGL------------------------K 211
Query: 243 SKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP 302
              D ++G ++ +V G                  YG+VGKGC  +L+  GS V VTEIDP
Sbjct: 212 RTTDMMFGGKQVVVCG------------------YGEVGKGCCAALKAMGSIVYVTEIDP 253
Query: 303 INALQASMEGYEL 315
           I ALQA M+G+ L
Sbjct: 254 ICALQACMDGFRL 266

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 82/279 (29%), Positives = 121/279 (43%), Gaps = 79/279 (28%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
           NMILDDGGDLT+ +++KYP                  N++K  K                
Sbjct: 133 NMILDDGGDLTHWIYKKYP------------------NMFKKIK---------------- 158
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
                   G  E  V G+ R   +  AGK+ V A                          
Sbjct: 159 --------GIVEESVTGVHRLYQLSKAGKLCVPA-------------------------- 184
Query: 302 PINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGK 361
                        +++ V     ++L      + +   +  D+M  GK  VV GYG+VGK
Sbjct: 185 -----------MNVNDSVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGK 233
Query: 362 GCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEH 421
           GC  +L+  GS V VTEIDPI ALQA M+G+ +  + E  ++  I +T TG K+++  EH
Sbjct: 234 GCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREH 293
Query: 422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
             +M++  IVCN+GH + EI V+ L    +    V+ QV
Sbjct: 294 LDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQV 332

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 74/108 (68%)
Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           +IK AE+GR+ I +AE EMP LMALR++   +K L GA+I GC H+T QTAVL+ETL  L
Sbjct: 18  NIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGAL 77
Query: 563 GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTL 610
           GA+ +W++CNI+ST +               WKGE+++++ WCI++ +
Sbjct: 78  GAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCV 125

>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3 Length = 435

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 57/115 (49%), Positives = 76/115 (66%), Gaps = 2/115 (1%)
Query: 601 EYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWT 660
           E  W   ++ VD    P+G  I+LLAEGRL+NL C+   P+FV+S + T Q LA IEL+ 
Sbjct: 322 ELTWERVRSQVDHVIWPDGKRIVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYN 380
Query: 661 K-HSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPD 714
               +Y   VY+LPKK+DE VA+LHL      LT+LT++QAKYLGL   GP+KP+
Sbjct: 381 APEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN 435

>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine Hydrolase Protein Length = 444

Iteration: 1
 Score =  191 bits (486), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 93/177 (52%), Positives = 125/177 (70%), Gaps = 1/177 (0%)
Query: 3   DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 62
           +IK AE+GR+ I +AE +M  L++LR++   +K L GA+I GC H+T QTAVLIETL  L
Sbjct: 23  NIKQAEFGRREIEIAEQDMSALISLRKRAQGEKPLAGAKIVGCTHITAQTAVLIETLCAL 82
Query: 63  GAEVQWSSCNIFSTQDHXXXXXXXXXXXXXXWKGETDEEYVWCIEQTLVFPDGKPLNMIL 122
           GA+ +WS+CNI+STQ+               WKGE+++++ WCI++  V  DG   NMIL
Sbjct: 83  GAQCRWSACNIYSTQNEVAAALAEAGVAVFAWKGESEDDFWWCIDRC-VNMDGWQANMIL 141
Query: 123 DDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           DDGGDLT+ V++KYP    +IRGI EE+ TGVH LY++ K  KL VPA+NVNDSVTK
Sbjct: 142 DDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTK 198

>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine Hydrolase Protein Length = 444

Iteration: 1
 Score =  187 bits (474), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 86/134 (64%), Positives = 105/134 (78%)
Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
           NMILDDGGDLT+ V++KYP    +IRGI EE+ TGVH LY++ K  KL VPA+NVNDSVT
Sbjct: 138 NMILDDGGDLTHWVYKKYPNVFKKIRGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVT 197
Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
           K KFDNLY CRES++DGLKR TD+M  GK  VV GYG+VGKGC  +L+  G+ V +TEID
Sbjct: 198 KQKFDNLYCCRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITEID 257
Query: 302 PINALQASMEGYEL 315
           PI ALQA M+G+ +
Sbjct: 258 PICALQACMDGFRV 271

>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine Hydrolase Protein Length = 444

Iteration: 1
 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 59/119 (49%), Positives = 79/119 (66%), Gaps = 2/119 (1%)
Query: 601 EYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWT 660
           E  W   ++ VD    P+G  ++LLAEGRL+NL C+   P+FV+S + T Q LA IEL+ 
Sbjct: 327 ELTWERVRSQVDHVIWPDGKRVVLLAEGRLLNLSCST-VPTFVLSITATTQALALIELYN 385
Query: 661 K-HSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
               +Y   VY+LPKK+DE VA+LHL      LT+L +DQAKYLGL   GP+KP++YRY
Sbjct: 386 APEGRYKQDVYLLPKKMDEYVASLHLPSFDAHLTELADDQAKYLGLNKNGPFKPNYYRY 444

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	718
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	1e-166
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	4e-72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	5e-72
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	1e-65
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	9e-11
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	1e-153
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	2e-72
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	1e-60
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	3e-59
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	7e-11
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	1e-150
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	5e-72
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	4e-65
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	5e-62
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	2e-11
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	1e-148
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	1e-72
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	3e-71
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	2e-55
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	3e-11
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	1e-146
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	9e-73
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	7e-67
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	1e-56
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	4e-11
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	1e-118
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	4e-91
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	7e-73
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	3e-70
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	2e-65
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	6e-10
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	1e-117
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	1e-90
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	4e-72
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	7e-69
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	3e-59
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	7e-10
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	3e-13
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	6e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	4e-05
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	1e-04

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  484 bits (1249), Expect = e-166
 Identities = 167/313 (53%), Positives = 205/313 (65%), Gaps = 28/313 (8%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            DI LA+WGRK + +AE EMPGLMA R ++G  + LKGARI+G LHMT+QTAVLIETL  
Sbjct: 8   KDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKV 67

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
           LGAEV+W+SCNIFSTQDHAAAAIAA G  V+A KGET EEY    +Q   +PDG+P NMI
Sbjct: 68  LGAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNMI 127

Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPL 181
           LDDGGD T  +                              E    V +   ++      
Sbjct: 128 LDDGGDATMYILIGAR------------------------AEAGEDVLSNPQSEEEEVLF 163

Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
             I              + +  + I+G++EETTTGV+ LY++ K+  L  PAINVNDSVT
Sbjct: 164 AQIKKRMAATPG----FFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVT 219

Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
           KSKFDN YGC+ESLVDG++R TD+M+AGKVAVV GYGDVGKG AQSL   G+RV VTE+D
Sbjct: 220 KSKFDNKYGCKESLVDGIRRGTDVMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVD 279

Query: 302 PINALQASMEGYE 314
           PI ALQA+M+G+E
Sbjct: 280 PICALQAAMDGFE 292

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  241 bits (616), Expect = 4e-72
 Identities = 67/108 (62%), Positives = 83/108 (76%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VD    P+G  +ILL+EGRL+NLG A GHPSFVMS SFTNQVL QIEL+T+   Y   VY
Sbjct: 357 VDLIEFPDGKRLILLSEGRLLNLGNATGHPSFVMSASFTNQVLGQIELFTRTDAYKNEVY 416

Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           +LPK LDE+VA LHL+ LG KLT L+E+QA Y+G+  +GP+K +HYRY
Sbjct: 417 VLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEHYRY 464

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  240 bits (615), Expect = 5e-72
 Identities = 100/291 (34%), Positives = 133/291 (45%), Gaps = 64/291 (21%)

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
           +P NMILDDGGD T  +     +  +    +S   +     L+   K+     P      
Sbjct: 122 EPSNMILDDGGDATMYILIGA-RAEAGEDVLSNPQSEEEEVLFAQIKKRMAATP------ 174

Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGK--VAVVAGYGDVGK-------GCAQSLR 289
                +   + G  E    G+ R   +   G      +     V K       GC +SL 
Sbjct: 175 GFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAINVNDSVTKSKFDNKYGCKESL- 233

Query: 290 LFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGK 349
                     +D I                                    +  D+M+AGK
Sbjct: 234 ----------VDGIR-----------------------------------RGTDVMMAGK 248

Query: 350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVT 409
           VAVV GYGDVGKG AQSL   G+RV VTE+DPI ALQA+M+G+EV T+++AA    I VT
Sbjct: 249 VAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVT 308

Query: 410 TTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           TTG KD+I  +H  +M+D  IV NIGHFD EIQV+ L    ++  NVKPQV
Sbjct: 309 TTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAAL--RNLKWTNVKPQV 357

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score =  223 bits (570), Expect = 1e-65
 Identities = 73/108 (67%), Positives = 85/108 (78%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA+WGRK + +AE EMPGLMA R ++G  + LKGARI+G LHMT+QTAVLIETL  L
Sbjct: 9   DISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVL 68

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
           GAEV+W+SCNIFSTQDHAAAAIAA G  V+A KGET EEY    +Q  
Sbjct: 69  GAEVRWASCNIFSTQDHAAAAIAATGTPVFAVKGETLEEYWTYTDQIF 116

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464

 Score = 63.9 bits (156), Expect = 9e-11
 Identities = 19/35 (54%), Positives = 25/35 (71%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
            LDE+VA LHL+ LG KLT L+E+QA Y+ +   G
Sbjct: 421 HLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQG 455

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  453 bits (1166), Expect = e-153
 Identities = 173/313 (55%), Positives = 208/313 (66%), Gaps = 28/313 (8%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
           ADI LA WGRK + +AE EMPGL+ +R +Y AQ+ LKGARIAG LHMT+QT VLIETL  
Sbjct: 38  ADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKA 97

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
           LGA+V+W+SCNIFSTQDHAAAAI   G  V+A+KGE+ +EY     +   +P+G+  NMI
Sbjct: 98  LGADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMI 157

Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPL 181
           LDDGGD T L+                              E    V A   N+      
Sbjct: 158 LDDGGDATLLLILGSKA------------------------EKDRSVIARPTNEEEVALF 193

Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
             I        +     Y + L+ I+G++EETTTGVH LY+M K+ +L  PA NVNDSVT
Sbjct: 194 KSIERHLEIDGS----WYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFNVNDSVT 249

Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
           KSKFDNLYGCRESLVDG+KRATD+M+AGK+AVVAGYGDVGKGCAQSLR  G+ V VTEID
Sbjct: 250 KSKFDNLYGCRESLVDGIKRATDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEID 309

Query: 302 PINALQASMEGYE 314
           PI ALQA+MEGY 
Sbjct: 310 PICALQAAMEGYR 322

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  243 bits (621), Expect = 2e-72
 Identities = 70/108 (64%), Positives = 86/108 (79%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVY 670
           VD    P+G  +ILLAEGRLVNLGCA GHPSFVMSNSFTNQ LAQIEL+T+  +Y   VY
Sbjct: 387 VDHIIFPDGKRVILLAEGRLVNLGCATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVY 446

Query: 671 MLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           +LPK LDE+VA LHL  +G +L++L++DQA Y+G+   GP+KPDHYRY
Sbjct: 447 VLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDHYRY 494

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  211 bits (538), Expect = 1e-60
 Identities = 75/118 (63%), Positives = 87/118 (73%), Gaps = 2/118 (1%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGK+AVVAGYGDVGKGCAQSLR  G+ V VTEIDPI ALQA+MEGY V TME AA 
Sbjct: 272 DVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAAD 331

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           +  IFVT TG   +I  +H   MR +AIVCNIGHFD EI V+   +   E  N+KPQV
Sbjct: 332 KADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVASTRQYQWE--NIKPQV 387

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score =  207 bits (528), Expect = 3e-59
 Identities = 67/108 (62%), Positives = 82/108 (75%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA WGRK + +AE EMPGL+ +R +Y AQ+ LKGARIAG LHMT+QT VLIETL  L
Sbjct: 39  DIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKAL 98

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
           GA+V+W+SCNIFSTQDHAAAAI   G  V+A+KGE+ +EY     +  
Sbjct: 99  GADVRWASCNIFSTQDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIF 146

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 17/35 (48%), Positives = 26/35 (74%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
            LDE+VA LHL  +G +L++L++DQA Y+ +  AG
Sbjct: 451 HLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAG 485

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  445 bits (1146), Expect = e-150
 Identities = 170/313 (54%), Positives = 205/313 (65%), Gaps = 22/313 (7%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            D+  A++GR  I +AE EMPGLMA R ++G  +  KGA+I G LHMT+QTAVLIETL  
Sbjct: 20  KDMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTA 79

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
           LGAEV+W SCNIFSTQDHAAAAIA    AV+AWKGET +EY WC E+ L +  G   ++I
Sbjct: 80  LGAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLI 139

Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKPL 181
           +DDGGD T L+HE                  GV       K  +   P    N      L
Sbjct: 140 VDDGGDTTLLIHE------------------GVKAEEIYEKSGQFPDPDSTDNAEFKIVL 181

Query: 182 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 241
           ++I     +      ++Y +    + G+SEETTTGV  LY+M     L  PAINVNDSVT
Sbjct: 182 SII----KEGLKTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVT 237

Query: 242 KSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID 301
           KSKFDNLYGCR SL DGL RATD+M+AGKVAVVAGYGDVGKGCA +L+  G+RVIVTEID
Sbjct: 238 KSKFDNLYGCRHSLPDGLMRATDVMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEID 297

Query: 302 PINALQASMEGYE 314
           PI ALQA+MEG +
Sbjct: 298 PICALQATMEGLQ 310

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  241 bits (617), Expect = 5e-72
 Identities = 75/111 (67%), Positives = 89/111 (80%), Gaps = 3/111 (2%)

Query: 611 VDRYTLPNGN-HIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPV 667
            DR+  P  N  II+LAEGRL+NLGCA GHPSFVMS SFTNQV+AQ+ELW + S  +Y  
Sbjct: 378 TDRWVFPETNTGIIILAEGRLMNLGCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEK 437

Query: 668 GVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
            VY+LPK LDE+VAALHLE LG KLTKL++DQA Y+ +P+EGPYKP HYRY
Sbjct: 438 KVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPYKPFHYRY 488

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  222 bits (568), Expect = 4e-65
 Identities = 98/285 (34%), Positives = 139/285 (48%), Gaps = 43/285 (15%)

Query: 179 KPLNMILDDGGDLTNLVHE--KYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINV 236
              ++I+DDGGD T L+HE  K  +   +     +  +T       +    K     +  
Sbjct: 134 GGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFPDPDSTDNAEFKIVLSIIK---EGLKT 190

Query: 237 NDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI 296
           +        D + G  E    G+KR   +   G +                         
Sbjct: 191 DPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLF----------------------- 227

Query: 297 VTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGY 356
                P   +  S+   + D      H    G+          +  D+M+AGKVAVVAGY
Sbjct: 228 -----PAINVNDSVTKSKFDNLYGCRHSLPDGLM---------RATDVMIAGKVAVVAGY 273

Query: 357 GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDI 416
           GDVGKGCA +L+  G+RVIVTEIDPI ALQA+MEG +V T+E+   E  IFVTTTG KDI
Sbjct: 274 GDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTTGNKDI 333

Query: 417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN-AVEKVNVKPQV 460
           I  +H  +M+++AIVCNIGHFD EI +  L+ +  V+++ +KPQ 
Sbjct: 334 IMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQT 378

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score =  214 bits (547), Expect = 5e-62
 Identities = 70/108 (64%), Positives = 83/108 (76%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           D+  A++GR  I +AE EMPGLMA R ++G  +  KGA+I G LHMT+QTAVLIETL  L
Sbjct: 21  DMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTAL 80

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
           GAEV+W SCNIFSTQDHAAAAIA    AV+AWKGET +EY WC E+ L
Sbjct: 81  GAEVRWCSCNIFSTQDHAAAAIARDSAAVFAWKGETLQEYWWCTERAL 128

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* Length = 488

 Score = 65.5 bits (160), Expect = 2e-11
 Identities = 22/35 (62%), Positives = 28/35 (80%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
            LDE+VAALHLE LG KLTKL++DQA Y+ + + G
Sbjct: 445 HLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEG 479

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  440 bits (1133), Expect = e-148
 Identities = 165/323 (51%), Positives = 204/323 (63%), Gaps = 36/323 (11%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
           AD+ LA++GRK + +AE+EMPGLM+LRR+Y   + LKGARI+G LHMTVQTAVLIETL  
Sbjct: 23  ADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTA 82

Query: 62  LGAEVQWSSCNIFSTQDHAAAA---------IAARGVAVYAWKGETDEEYVWCIEQTLVF 112
           LGAEV+W+SCNIFSTQDHAAAA            +GV V+AWKGET EEY W  EQ L +
Sbjct: 83  LGAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLTW 142

Query: 113 PDG-KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAI 171
           PD  KP NMILDDGGD T LV                              E    VP  
Sbjct: 143 PDPDKPANMILDDGGDATMLVLRGMQY------------------------EKAGVVPPA 178

Query: 172 NVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGV 231
             +D       + L+          +K+ +    ++G++EETTTGV  LY+      L  
Sbjct: 179 EEDDP--AEWKVFLNLLRTRFETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAAGDLAF 236

Query: 232 PAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLF 291
           PAINVNDSVTKSKFDN YG R SL+DG+ R TD ++ GK  ++ GYGDVGKGCA++++  
Sbjct: 237 PAINVNDSVTKSKFDNKYGTRHSLIDGINRGTDALIGGKKVLICGYGDVGKGCAEAMKGQ 296

Query: 292 GSRVIVTEIDPINALQASMEGYE 314
           G+RV VTEIDPINALQA MEG++
Sbjct: 297 GARVSVTEIDPINALQAMMEGFD 319

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  243 bits (622), Expect = 1e-72
 Identities = 72/109 (66%), Positives = 88/109 (80%), Gaps = 1/109 (0%)

Query: 611 VDRYTLPN-GNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGV 669
           VD +T  + G  II+L+EGRL+NLG A GHPSFVMSNSF NQ +AQIELWTK+ +Y   V
Sbjct: 386 VDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEYDNEV 445

Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           Y LPK LDE+VA +H+E LG  LTKLT++QA+YLG+ +EGPYKPDHYRY
Sbjct: 446 YRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEGPYKPDHYRY 494

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  239 bits (612), Expect = 3e-71
 Identities = 103/296 (34%), Positives = 135/296 (45%), Gaps = 70/296 (23%)

Query: 179 KPLNMILDDGGDLTNLVH-----EKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPA 233
           KP NMILDDGGD T LV      EK             E    ++ L   F+ +K     
Sbjct: 147 KPANMILDDGGDATMLVLRGMQYEKAGVVPPAEEDDPAEWKVFLNLLRTRFETDKDKWTK 206

Query: 234 INVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKV---------AVVAGYGDVGKGC 284
           I           +++ G  E    G+ R      AG +         +V     D   G 
Sbjct: 207 I----------AESVKGVTEETTTGVLRLYQFAAAGDLAFPAINVNDSVTKSKFDNKYGT 256

Query: 285 AQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
             SL           ID IN                                   +  D 
Sbjct: 257 RHSL-----------IDGIN-----------------------------------RGTDA 270

Query: 345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG 404
           ++ GK  ++ GYGDVGKGCA++++  G+RV VTEIDPINALQA MEG++V T+EEA  + 
Sbjct: 271 LIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDA 330

Query: 405 GIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
            I VT TG KDII  EH   M+D AI+ NIGHFD EI ++ L+++   +VNVKPQV
Sbjct: 331 DIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQV 386

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score =  196 bits (501), Expect = 2e-55
 Identities = 75/117 (64%), Positives = 89/117 (76%), Gaps = 9/117 (7%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           D+ LA++GRK + +AE+EMPGLM+LRR+Y   + LKGARI+G LHMTVQTAVLIETL  L
Sbjct: 24  DLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTAL 83

Query: 563 GAEVQWSSCNIFSTQDHAAAA---------IAARGVAVYAWKGETDEEYVWCIEQTL 610
           GAEV+W+SCNIFSTQDHAAAA            +GV V+AWKGET EEY W  EQ L
Sbjct: 84  GAEVRWASCNIFSTQDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQML 140

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* Length = 494

 Score = 65.2 bits (159), Expect = 3e-11
 Identities = 19/35 (54%), Positives = 27/35 (77%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
            LDE+VA +H+E LG  LTKLT++QA+YL + + G
Sbjct: 451 HLDEKVARIHVEALGGHLTKLTKEQAEYLGVDVEG 485

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  433 bits (1116), Expect = e-146
 Identities = 153/316 (48%), Positives = 202/316 (63%), Gaps = 25/316 (7%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            DI LA +G+  + ++ENEMPGLM +R +YG  + LK A+I GCLHMTV+ A+LIETL +
Sbjct: 9   KDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQK 68

Query: 62  LGAEVQWSSCNIFSTQDHAAAA-IAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKP--L 118
           LGA+++W SCNI+ST D+AAAA      V V+AWK ET EEY WC+E  L + DG     
Sbjct: 69  LGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGP 128

Query: 119 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 178
           +MI+DDGGD T LVH+                  GV       ++N L  P    N+   
Sbjct: 129 DMIVDDGGDATLLVHK------------------GVEYEKLYEEKNILPDPEKAKNEEER 170

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
             L ++     +      +K+     +I G+SEETTTGV  L KM K+N+L   AINVND
Sbjct: 171 CFLTLL----KNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVND 226

Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
           +VTK K+DN+YGCR SL DGL RATD +++GK+ V+ GYGDVGKGCA S++  G+RV +T
Sbjct: 227 AVTKQKYDNVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYIT 286

Query: 299 EIDPINALQASMEGYE 314
           EIDPI A+QA MEG+ 
Sbjct: 287 EIDPICAIQAVMEGFN 302

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  243 bits (621), Expect = 9e-73
 Identities = 62/110 (56%), Positives = 80/110 (72%), Gaps = 2/110 (1%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKH--SQYPVG 668
           VDR TLPNGN II+LA GRL+NLGCA GHP+FVMS SF NQ  AQ++LW     ++Y   
Sbjct: 370 VDRITLPNGNKIIVLARGRLLNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENK 429

Query: 669 VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
           VY+LPK LDE+VA  HL+ L   LT+L ++Q ++LG+   GP+K + YRY
Sbjct: 430 VYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY 479

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  227 bits (580), Expect = 7e-67
 Identities = 90/301 (29%), Positives = 126/301 (41%), Gaps = 57/301 (18%)

Query: 170 AINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKL 229
           A+   D      +MI+DDGGD T LVH+                     N  +      L
Sbjct: 117 ALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPDPEKAKNEEERCFLTLL 176

Query: 230 GVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAG--KVAVVAGYGDVGK----- 282
               +      T      + G  E    G+ R   +          +     V K     
Sbjct: 177 KNSILKNPKKWTN-IAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDN 235

Query: 283 --GCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAK 340
             GC  SL            D +                                    +
Sbjct: 236 VYGCRHSL-----------PDGLM-----------------------------------R 249

Query: 341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA 400
             D +++GK+ V+ GYGDVGKGCA S++  G+RV +TEIDPI A+QA MEG+ V T++E 
Sbjct: 250 ATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEI 309

Query: 401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK-NAVEKVNVKPQ 459
             +G  F+T TG  D+I+ EH L+M+++A+V NIGHFD EIQV+ L     +   NVKPQ
Sbjct: 310 VDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQ 369

Query: 460 V 460
           V
Sbjct: 370 V 370

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score =  199 bits (508), Expect = 1e-56
 Identities = 65/123 (52%), Positives = 86/123 (69%), Gaps = 1/123 (0%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA +G+  + ++ENEMPGLM +R +YG  + LK A+I GCLHMTV+ A+LIETL +L
Sbjct: 10  DISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKL 69

Query: 563 GAEVQWSSCNIFSTQDHAAAA-IAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNH 621
           GA+++W SCNI+ST D+AAAA      V V+AWK ET EEY WC+E  L       NG  
Sbjct: 70  GAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPD 129

Query: 622 IIL 624
           +I+
Sbjct: 130 MIV 132

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479

 Score = 64.8 bits (158), Expect = 4e-11
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
            LDE+VA  HL+ L   LT+L ++Q ++L +  +G
Sbjct: 436 HLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSG 470

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  361 bits (929), Expect = e-118
 Identities = 122/179 (68%), Positives = 146/179 (81%), Gaps = 1/179 (0%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            DI LAEWGR+ + +AENEMPGLM LRR+YG  K LKGA+IAGCLHMT+QTAVLIETL+E
Sbjct: 6   RDISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVE 65

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFP-DGKPLNM 120
           LGAEV+W+SCNIFSTQDHAAAAIA RG+ V+AWKGET+EEY+WC++QTL         NM
Sbjct: 66  LGAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNM 125

Query: 121 ILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           +LDDGGDLTN V ++  +   +I G+SEETTTGV NLYK  +  KL +PA+NVNDSVTK
Sbjct: 126 LLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTK 184

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  290 bits (744), Expect = 4e-91
 Identities = 96/136 (70%), Positives = 114/136 (83%)

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
              NM+LDDGGDLTN V ++  +   +I G+SEETTTGV NLYK  +  KL +PA+NVND
Sbjct: 121 GYPNMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVND 180

Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
           SVTKSKFDNLYGCRESLVDG+KRATD+M+AGK A V GYGDVGKGCA +LR FG+RV+VT
Sbjct: 181 SVTKSKFDNLYGCRESLVDGIKRATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVT 240

Query: 299 EIDPINALQASMEGYE 314
           E+DPINALQA+MEGY+
Sbjct: 241 EVDPINALQAAMEGYQ 256

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  242 bits (619), Expect = 7e-73
 Identities = 83/118 (70%), Positives = 97/118 (82%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGK A V GYGDVGKGCA +LR FG+RV+VTE+DPINALQA+MEGY+V  +E+  +
Sbjct: 206 DVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVE 265

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           E  IFVTTTG  DII  EHF +MRDDAIVCNIGHFD EIQV+WL  NA E+V VKPQV
Sbjct: 266 EAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQV 323

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  235 bits (601), Expect = 3e-70
 Identities = 84/108 (77%), Positives = 99/108 (91%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LAEWGR+ + +AENEMPGLM LRR+YG  K LKGA+IAGCLHMT+QTAVLIETL+EL
Sbjct: 7   DISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVEL 66

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL 610
           GAEV+W+SCNIFSTQDHAAAAIA RG+ V+AWKGET+EEY+WC++QTL
Sbjct: 67  GAEVRWASCNIFSTQDHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTL 114

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score =  222 bits (568), Expect = 2e-65
 Identities = 81/114 (71%), Positives = 88/114 (77%), Gaps = 6/114 (5%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKH------SQ 664
           VDRYT+ NG HIILLAEGRLVNLGCA GHPSFVMSNSF NQVLAQIELWT          
Sbjct: 323 VDRYTMANGRHIILLAEGRLVNLGCASGHPSFVMSNSFCNQVLAQIELWTNRDTGKYPRG 382

Query: 665 YPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY 718
               VY LPKKLDE+VAALHL  LG KLTKLT  QA+Y+  P++GP+KPDHYRY
Sbjct: 383 AKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKPDHYRY 436

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436

 Score = 61.1 bits (149), Expect = 6e-10
 Identities = 20/32 (62%), Positives = 25/32 (78%)

Query: 313 YELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
            +LDE+VAALHL  LG KLTKLT  QA+Y++ 
Sbjct: 392 KKLDEKVAALHLGKLGAKLTKLTPKQAEYINC 423

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  358 bits (921), Expect = e-117
 Identities = 97/178 (54%), Positives = 134/178 (75%), Gaps = 1/178 (0%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            +IK AE+GR+ I +AE EMP LMALR++   +K L GA+I GC H+T QTAVL+ETL  
Sbjct: 17  KNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGA 76

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
           LGA+ +W++CNI+ST +  AAA+A  G  V+AWKGE+++++ WCI++ +     +P NMI
Sbjct: 77  LGAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQP-NMI 135

Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           LDDGGDLT+ +++KYP    +I+GI EE+ TGVH LY++ K  KL VPA+NVNDSVTK
Sbjct: 136 LDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTK 193

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  288 bits (740), Expect = 1e-90
 Identities = 86/136 (63%), Positives = 104/136 (76%)

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
              NMILDDGGDLT+ +++KYP    +I+GI EE+ TGVH LY++ K  KL VPA+NVND
Sbjct: 130 WQPNMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVND 189

Query: 239 SVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT 298
           SVTK KFDNLY CRES++DGLKR TD+M  GK  VV GYG+VGKGC  +L+  GS V VT
Sbjct: 190 SVTKQKFDNLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVT 249

Query: 299 EIDPINALQASMEGYE 314
           EIDPI ALQA M+G+ 
Sbjct: 250 EIDPICALQACMDGFR 265

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  240 bits (614), Expect = 4e-72
 Identities = 53/118 (44%), Positives = 75/118 (63%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M  GK  VV GYG+VGKGC  +L+  GS V VTEIDPI ALQA M+G+ +  + E  +
Sbjct: 215 DMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIR 274

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           +  I +T TG K+++  EH  +M++  IVCN+GH + EI V+ L    +    V+ QV
Sbjct: 275 QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQV 332

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  231 bits (591), Expect = 7e-69
 Identities = 61/122 (50%), Positives = 88/122 (72%), Gaps = 3/122 (2%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           +IK AE+GR+ I +AE EMP LMALR++   +K L GA+I GC H+T QTAVL+ETL  L
Sbjct: 18  NIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGAL 77

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHI 622
           GA+ +W++CNI+ST +  AAA+A  G  V+AWKGE+++++ WCI++ +      PN   +
Sbjct: 78  GAQCRWAACNIYSTLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQPN---M 134

Query: 623 IL 624
           IL
Sbjct: 135 IL 136

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score =  205 bits (524), Expect = 3e-59
 Identities = 55/105 (52%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTK-HSQYPVGV 669
           VD    P+G  I+LLAEGRL+NL C+   P+FV+S + T Q LA IEL+     +Y   V
Sbjct: 332 VDHVIWPDGKRIVLLAEGRLLNLSCS-TVPTFVLSITATTQALALIELYNAPEGRYKQDV 390

Query: 670 YMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPD 714
           Y+LPKK+DE VA+LHL      LT+LT++QAKYLGL   GP+KP+
Sbjct: 391 YLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN 435

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435

 Score = 60.7 bits (148), Expect = 7e-10
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 313 YELDEEVAALHLEHLGVKLTKLTEDQAKYLDI 344
            ++DE VA+LHL      LT+LT++QAKYL +
Sbjct: 395 KKMDEYVASLHLPTFDAHLTELTDEQAKYLGL 426

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 70.0 bits (171), Expect = 3e-13
 Identities = 27/162 (16%), Positives = 55/162 (33%), Gaps = 15/162 (9%)

Query: 170 AINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSE-IRGISEETT--TGVHN--LYKMF 224
             N  D++  P++   ++ G +  +   +      E I          +G+ N  L +  
Sbjct: 55  DWNTVDAILLPISGT-NEAGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCM 113

Query: 225 KENKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGC 284
           K+    +  +   D +      N     E  +    + TD  + G    V G G VG   
Sbjct: 114 KKTNRTLVKLMERDDIA---IYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSV 170

Query: 285 AQSLRLFGSRVIVTEIDPINALQASMEGY------ELDEEVA 320
           A+     G++V V   +     + +  G       +  +E+ 
Sbjct: 171 ARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELR 212

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 66.1 bits (161), Expect = 6e-12
 Identities = 19/97 (19%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D  + G    V G G VG   A+     G++V V   +     + +  G E   + +AA+
Sbjct: 150 DFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQ 209

Query: 403 EGG----IFVTTTGCKDIIRGEHFLQMRDDAIVCNIG 435
           E         T      ++      +M     V ++ 
Sbjct: 210 ELRDVDVCINTIPAL--VVTANVLAEMPSHTFVIDLA 244

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 82/547 (14%), Positives = 177/547 (32%), Gaps = 130/547 (23%)

Query: 212 ETTTGVHNL-YK----MFKEN-KLGVPAINVNDS----VTKSKFDNLYGCRESLVDGLKR 261
           +  TG H   YK    +F++         +V D     ++K + D++   +++ V G  R
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA-VSGTLR 66

Query: 262 ATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELD----- 316
               +L+ +  +V  +  V +    + +   S +   +  P  ++   M   + D     
Sbjct: 67  LFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQP--SMMTRMYIEQRDRLYND 122

Query: 317 -EEVAALHL--EHLGVKLTK-LTEDQ-AKYLDI--ML-AGK-VAVVAGYGDVGKGCAQSL 367
            +  A  ++      +KL + L E + AK + I  +L +GK    +         C    
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF 182

Query: 368 RLF----GSRVIVTEI-DPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHF 422
           ++F     +      + + +  L      Y++     +  +           +I    H 
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLL-----YQIDPNWTSRSDHS--------SNIKLRIHS 229

Query: 423 LQMRDDAIVCNIGHFDCEI---QVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCN 479
           +Q     ++ +  + +C +    V   +  A    N+  ++  T+R K + T+ L A   
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNV-Q-NAKAWNAFNLSCKILLTTRFKQV-TDFLSAA-- 284

Query: 480 SLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEM----PGLMALRRKYGAQK 535
                + ++  H + TL       + L ++          E+    P  +++        
Sbjct: 285 ---TTTHISLDHHSMTLTPDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSI---IAESI 337

Query: 536 ILKGARIAGCLHMTV-QTAVLIETLLEL--GAEVQ--WSSCNIFSTQDHAAAAIAARGVA 590
               A      H+   +   +IE+ L +   AE +  +   ++F       A I    ++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF--PPS--AHIPTILLS 393

Query: 591 VYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHPSFVMSNSFTN 650
           +  W      +                                         V+ N    
Sbjct: 394 LI-WFDVIKSD--------------------------------------VMVVV-NKLHK 413

Query: 651 QVLAQIELWTKHSQYPV-GVYMLPKKLDEEVAALH---LEHLGVK-------LTKLTEDQ 699
             L  +E   K S   +  +Y+  K   E   ALH   ++H  +        L     DQ
Sbjct: 414 YSL--VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 700 --AKYLG 704
               ++G
Sbjct: 472 YFYSHIG 478

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 9/96 (9%)

Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
           L G+  ++ G G +G+  A      G  VI        A     E    T   +A     
Sbjct: 135 LTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFH-ETVAFTATADALATAN 193

Query: 406 IFVTT------TGCKDIIRGEHFLQMRDDAIVCNIG 435
             V        T    +   E F Q +   ++ NIG
Sbjct: 194 FIVNALPLTPTT--HHLFSTELFQQTKQQPMLINIG 227

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286

 Score = 43.5 bits (102), Expect = 1e-04
 Identities = 11/70 (15%), Positives = 23/70 (32%)

Query: 342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAA 401
            + +    VA++   G +G    + +      +   EI P    +    G  +T  +   
Sbjct: 6   KNDVGPKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWI 65

Query: 402 KEGGIFVTTT 411
            E  + V   
Sbjct: 66  DEADVVVLAL 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	718
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	100.0
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	100.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	100.0
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	100.0
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	100.0
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	100.0
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	100.0
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	100.0
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.89
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.89
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.88
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.87
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.87
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.87
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.86
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.86
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.85
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.85
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.85
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.83
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.83
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.82
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.82
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.81
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.81
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.81
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.8
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.8
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.79
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.79
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.79
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.78
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.77
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.77
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.75
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.75
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.75
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.72
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.72
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.72
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.72
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.71
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.71
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.53
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.49
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.22
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.19
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.09
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.07
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.05
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	98.97
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	98.77
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	98.73
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.51
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.5
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.49
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.48
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.45
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.44
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.44
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.4
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.39
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.39
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.39
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.35
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	98.33
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.32
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.32
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.31
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	98.31
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	98.29
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	98.28
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	98.26
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	98.23
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	98.21
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.2
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	98.2
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	97.5
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.18
3qha_A	296	Putative oxidoreductase; seattle structural genomi	98.18
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.17
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.17
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	98.15
4ezb_A	317	Uncharacterized conserved protein; structural geno	98.15
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.14
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.11
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	98.11
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	98.08
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	98.08
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.07
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	98.06
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.04
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.03
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.03
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.03
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	98.01
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	97.98
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	97.98
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	97.95
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	97.94
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	97.93
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	97.92
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	97.9
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	97.9
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	97.84
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	97.82
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	97.77
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	97.74
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	97.71
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	97.71
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.7
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.7
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.69
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.64
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	97.63
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.59
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	97.59
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	97.59
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.58
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.58
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	97.56
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	97.56
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	97.56
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	97.53
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	97.53
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.53
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	97.48
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	97.48
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	97.47
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.47
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	97.46
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	97.46
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.46
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	97.45
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.45
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	97.45
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	97.45
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	97.45
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	97.43
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.42
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.4
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.39
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.39
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.38
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	97.35
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	97.35
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	97.32
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.31
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.31
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	97.27
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	97.25
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.25
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.24
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	97.22
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.21
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.21
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.18
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.17
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.17
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	97.15
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.14
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.12
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.11
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.11
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	97.09
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	97.09
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.09
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	97.08
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.08
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.07
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	97.07
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.07
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.06
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.04
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.02
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	97.01
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	96.99
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.98
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.97
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	96.97
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	96.97
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.96
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.95
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	96.94
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.94
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	96.93
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	96.9
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.9
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	96.86
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	96.83
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.81
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	96.81
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.81
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	96.8
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.79
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	96.79
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	96.79
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	96.78
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	96.76
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	96.74
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	96.71
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	96.7
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.69
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.67
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	96.66
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.65
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.64
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.62
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	96.61
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.61
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	96.61
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	96.6
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.6
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.59
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.57
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	96.56
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	96.55
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	96.54
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	96.54
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	96.53
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	96.52
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	96.51
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.5
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	96.5
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	96.5
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.49
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	96.49
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.49
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	96.46
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	96.46
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.44
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	96.43
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	96.43
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.4
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.39
4eye_A	342	Probable oxidoreductase; structural genomics, niai	96.39
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	96.38
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.37
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	96.35
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	96.35
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	96.34
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	96.33
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	96.33
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.29
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	96.28
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	96.28
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	96.28
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	96.27
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.27
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	96.26
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	96.25
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	96.23
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	96.22
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	96.22
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	96.21
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.2
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	96.18
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	96.18
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	96.18
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	96.17
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.16
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.15
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.15
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	96.15
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.13
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	96.12
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	96.12
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.11
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	96.1
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.1
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.08
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	96.07
1bgv_A	449	Glutamate dehydrogenase; oxidoreductase; HET: GLU;	96.07
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.06
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	96.05
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.04
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	96.04
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	96.03
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	96.03
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	96.03
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	96.01
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.01
3r9u_A	315	Thioredoxin reductase; structural genomics, center	96.0
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	95.97
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.97
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.97
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	95.96
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.96
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	95.96
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	95.96
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.95
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.94
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.9
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	95.9
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.9
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	95.89
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.89
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.88
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	95.88
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	95.85
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.85
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.84
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	95.84
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	95.83
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	95.82
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	95.82
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	95.8
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	95.79
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	95.79
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	95.78
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	95.78
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.78
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	95.77
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	95.77
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	95.76
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	95.75
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.73
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.73
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	95.73
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	95.72
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	95.72
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.7
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	95.7
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	95.7
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.7
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	95.7
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	95.7
4g65_A	461	TRK system potassium uptake protein TRKA; structur	95.67
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	95.67
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.67
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	95.66
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	95.65
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	95.63
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	95.63
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	95.62
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	95.62
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	95.62
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	95.59
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	95.59
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	95.59
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	95.58
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	95.58
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	95.57
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	95.54
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	95.54
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	95.53
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	95.52
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	95.49
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	95.49
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	95.48
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.47
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	95.47
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.47
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	95.46
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	95.46
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.45
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.42
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	95.41
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	95.4
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.39
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	95.39
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	95.38
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	95.36
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	95.35
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.35
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.34
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.33
4fk1_A	304	Putative thioredoxin reductase; structural genomic	95.33
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	95.33
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	95.32
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	95.31
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.3
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	95.24
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.24
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	95.22
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	95.22
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	95.2
4dna_A	463	Probable glutathione reductase; structural genomic	95.2
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.17
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.17
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.16
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.16
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.16
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	95.14
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	95.13
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	95.11
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	95.11
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	95.1
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	95.09
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	95.06
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	95.05
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	95.05
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.04
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.04
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	95.04
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.01
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.0
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.0
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	94.99
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	94.98
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	94.96
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	94.95
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.95
1lnq_A	336	MTHK channels, potassium channel related protein;	94.95
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	94.94
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	94.92
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	94.88
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	94.85
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	94.85
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.84
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	94.82
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	94.82
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	94.8
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	94.8
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	94.79
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	94.78
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	94.75
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.73
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	94.72
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	94.7
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	94.68
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	94.66
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	94.66
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	94.65
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.63
1fec_A	490	Trypanothione reductase; redox-active center, oxid	94.6
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	94.52
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.47
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.43
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	94.42
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	94.4
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	94.38
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	94.36
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	94.35
1ydw_A	362	AX110P-like protein; structural genomics, protein	94.33
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	94.32
4had_A	350	Probable oxidoreductase protein; structural genomi	94.28
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.28
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	94.27
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	94.24
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	94.23
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.21
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	94.21
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	94.19
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	94.19
2h7i_A	269	Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi	94.18
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	94.13
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	94.1
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	94.08
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	94.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	93.96
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	93.96
3tl2_A	315	Malate dehydrogenase; center for structural genomi	93.93
3c85_A	183	Putative glutathione-regulated potassium-efflux S	93.89
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	93.89
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	93.87
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	93.87
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	93.86
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	93.8
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	93.8
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	93.79
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	93.77
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	93.75
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	93.72
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	93.71
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	93.63
2duw_A	145	Putative COA-binding protein; ligand binding prote	93.49
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	93.49
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	93.48
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	93.44
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	93.42
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	93.39
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.35
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	93.22
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	93.21
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	93.15
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	93.13
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	93.1
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	93.02
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.0
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	92.99
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	92.99
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	92.95
2q2v_A	255	Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore	92.94
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	92.92
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	92.9
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	92.82
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	92.8
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	92.78
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	92.77
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	92.75
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	92.72
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	92.72
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	92.68

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=3.8e-134  Score=1107.76  Aligned_cols=453  Identities=59%  Similarity=0.907  Sum_probs=417.0

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||+|||++|+||++|||+||++|++|+++|||||+||++|+|||+|||+|+|||+++||||+|||||||||||||
T Consensus         7 v~d~~la~~G~~~i~~ae~~MP~L~~~r~~~~~~kPl~G~rI~~~lH~t~~TavlietL~a~GAev~~~~cN~~STqd~~   86 (464)
T 3n58_A            7 VKDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVLGAEVRWASCNIFSTQDHA   86 (464)
T ss_dssp             ESCGGGHHHHHHHHHHHHTTCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCCCHHH
T ss_pred             ccCchhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCCCCCEEEEEEecHHHHHHHHHHHHHcCCeEEEecCCCCCCcHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhC-----hhhhhcccCCCcccchhHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKY-----PQFLSEIRGISEETTTGVH  155 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~-----~~~~~~~~g~~eet~~g~~  155 (718)
                      ||||++.|||||||||||++|||||++++|+|+++.+||||+||||||++++|+..     +.+++.-      +..-.+
T Consensus        87 aaal~~~gi~v~A~kget~eey~~~~~~~l~~~~~~~p~~ilDDGgDl~~~~h~~~~~~~~~~~~~~~------~~~~~~  160 (464)
T 3n58_A           87 AAAIAATGTPVFAVKGETLEEYWTYTDQIFQWPDGEPSNMILDDGGDATMYILIGARAEAGEDVLSNP------QSEEEE  160 (464)
T ss_dssp             HHHHHHTTCCEEECTTCCHHHHHHHHHHTTCCTTSCCCSEEEESSSHHHHHHHHHHHHHTTCCCSSSC------CSHHHH
T ss_pred             HHHHHhcCCeEEEeCCCCHHHHHHHHHHHHcccCCCCCCEEEECchHHHHHHHhhhhhhcccccCCCC------CcHHHH
Confidence            99999999999999999999999999999999888778999999999999999432     1111111      111222


Q ss_pred             hHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEE
Q psy7896         156 NLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN  235 (718)
Q Consensus       156 ~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~  235 (718)
                      -|++.++..                           ....+++|+++.+++.|++|+|+|||||||+|+++|.|.|||+|
T Consensus       161 ~~~~~~~~~---------------------------~~~~~~~~~~~~~~i~G~~EeTtTGv~rL~~m~~~g~L~~Pvin  213 (464)
T 3n58_A          161 VLFAQIKKR---------------------------MAATPGFFTKQRAAIKGVTEETTTGVNRLYQLQKKGLLPFPAIN  213 (464)
T ss_dssp             HHHHHHHHH---------------------------HHHSTTHHHHHHHHCCEEEECSHHHHHHHHHHHHHTCCCSCEEE
T ss_pred             HHHHHHHHH---------------------------hhcCcchhHHHHhhccceeeccccchHHHHHHHHcCCCCCCEEe
Confidence            334444322                           22344678889999999999999999999999999999999999


Q ss_pred             ecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhh
Q psy7896         236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL  315 (718)
Q Consensus       236 v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L  315 (718)
                      ||||++|++|||+|||+||+++++.|+++                                                   
T Consensus       214 Vnds~tK~~fDn~yG~~eslvdgI~Ratg---------------------------------------------------  242 (464)
T 3n58_A          214 VNDSVTKSKFDNKYGCKESLVDGIRRGTD---------------------------------------------------  242 (464)
T ss_dssp             CTTSHHHHTTHHHHHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred             eccHhhhhhhhhhhcchHHHHHHHHHhcC---------------------------------------------------
Confidence            99999999999999999999999998644                                                   


Q ss_pred             hHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec
Q psy7896         316 DEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT  395 (718)
Q Consensus       316 ~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~  395 (718)
                                                  .++.||||+|+|+|+||+.+|++|++|||+|+++|++|.++.++.++|++++
T Consensus       243 ----------------------------~~L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv  294 (464)
T 3n58_A          243 ----------------------------VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVV  294 (464)
T ss_dssp             ----------------------------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEEC
T ss_pred             ----------------------------CcccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceec
Confidence                                        4577899999999999999999999999999999999988888888999999


Q ss_pred             CHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHH
Q psy7896         396 TMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALL  475 (718)
Q Consensus       396 ~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~  475 (718)
                      ++++++++||||+++++|+++|++++|++||+|++|||+|||+.|+|.++|.+  ..+.+++|+|               
T Consensus       295 ~LeElL~~ADIVv~atgt~~lI~~e~l~~MK~GAILINvGRgdvEID~~aL~~--~~~~~ik~~v---------------  357 (464)
T 3n58_A          295 TLDDAASTADIVVTTTGNKDVITIDHMRKMKDMCIVGNIGHFDNEIQVAALRN--LKWTNVKPQV---------------  357 (464)
T ss_dssp             CHHHHGGGCSEEEECCSSSSSBCHHHHHHSCTTEEEEECSSSTTTBTCGGGTT--SEEEEEETTE---------------
T ss_pred             cHHHHHhhCCEEEECCCCccccCHHHHhcCCCCeEEEEcCCCCcccCHHHHHh--CccccccCCe---------------
Confidence            99999999999999999999999999999999999999999999999999986  5778899999               


Q ss_pred             hhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHH
Q psy7896         476 ATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVL  555 (718)
Q Consensus       476 n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L  555 (718)
                                                                                                      
T Consensus       358 --------------------------------------------------------------------------------  357 (464)
T 3n58_A          358 --------------------------------------------------------------------------------  357 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccc
Q psy7896         556 IETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGC  635 (718)
Q Consensus       556 ~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~  635 (718)
                                                                              +.++++||..||+...|+||||+|
T Consensus       358 --------------------------------------------------------~~~~~~~g~~i~lLaeGrlvNL~~  381 (464)
T 3n58_A          358 --------------------------------------------------------DLIEFPDGKRLILLSEGRLLNLGN  381 (464)
T ss_dssp             --------------------------------------------------------EEEECTTSCEEEEEGGGSBHHHHH
T ss_pred             --------------------------------------------------------eEEEeCCCCEEEEEeCCceecccC
Confidence                                                                    555689999999999999999999


Q ss_pred             cCCCCcceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCC
Q psy7896         636 AMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDH  715 (718)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (718)
                      ++||||||||+||+||+|||+|||+++++|++|||.|||+|||+||++||++||++||+||++|++|||+|.+|||||||
T Consensus       382 a~GhP~~vm~~sf~~Q~la~~~l~~~~~~~~~~v~~lP~~lDe~VA~l~L~~~g~~l~~lt~~Q~~yl~~~~~gp~k~~~  461 (464)
T 3n58_A          382 ATGHPSFVMSASFTNQVLGQIELFTRTDAYKNEVYVLPKHLDEKVARLHLDKLGAKLTVLSEEQAAYIGVTPQGPFKSEH  461 (464)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHSGGGCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHHHHHTCCTTSCCSCTT
T ss_pred             CCCChHHHHhHHHHHHHHHHHHHHhCccccCCCeeECCHHHHHHHHHHHHHHcCCEeccCCHHHHHHcCCCCCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy7896         716 YRY  718 (718)
Q Consensus       716 ~~~  718 (718)
                      |||
T Consensus       462 yry  464 (464)
T 3n58_A          462 YRY  464 (464)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            999

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=100.00  E-value=5.5e-127  Score=1051.95  Aligned_cols=425  Identities=73%  Similarity=1.182  Sum_probs=402.7

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||+|||++|+||++|||+||++|++|+++|||||+||++|+|||+|||+|++||+++||||+|||||||||||||
T Consensus         5 v~d~~la~~g~~~i~~a~~~mp~l~~~r~~~~~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqd~~   84 (436)
T 3h9u_A            5 VRDISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRWASCNIFSTQDHA   84 (436)
T ss_dssp             ESCGGGHHHHHHHHHHHHHHCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTTCCHHH
T ss_pred             ccChhhhHhhhHHHHHHHhhCHHHHHHHHHHhccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEEecCCCCCCcHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHc-cCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTL-VFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYK  159 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~-~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~  159 (718)
                      ||||++.|||||||||||++|||||++++| +|+++.+||||+||||||++++|++||+++++|+|++||||||      
T Consensus        85 aaal~~~gi~v~a~~ge~~~ey~~~~~~~l~~~~~~~~p~~ilDdGgdl~~~~h~~~~~~~~~i~G~~EeTttG------  158 (436)
T 3h9u_A           85 AAAIAKRGIPVFAWKGETEEEYMWCMKQTLKGFSGDGYPNMLLDDGGDLTNYVLDECKELDGKIYGVSEETTTG------  158 (436)
T ss_dssp             HHHHHHTTCCEEECTTCCHHHHHHHHHHTTSCBTTTBCCSEEEESSSHHHHHHHHHC-CCTTTCCCEEECSHHH------
T ss_pred             HHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHhcccCCCCceEeccccHHHHHHHHHhHHHHhhccceeeccCcC------
Confidence            999999999999999999999999999999 9988866799999999999999999999999999999999999      


Q ss_pred             HHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCC
Q psy7896         160 MFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDS  239 (718)
Q Consensus       160 ~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds  239 (718)
                                                                               ++||++|.+++.|.+||+|||||
T Consensus       159 ---------------------------------------------------------v~rL~~~~~~g~L~iPVinvnds  181 (436)
T 3h9u_A          159 ---------------------------------------------------------VKNLYKRLQRGKLTIPAMNVNDS  181 (436)
T ss_dssp             ---------------------------------------------------------HHHHHHHHHHTCCCSCEEECTTS
T ss_pred             ---------------------------------------------------------hHHHHHHHHcCCCCCceEeechh
Confidence                                                                     67777777788999999999999


Q ss_pred             cccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHH
Q psy7896         240 VTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEV  319 (718)
Q Consensus       240 ~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i  319 (718)
                      .+|+.|||.|||++|+++++.|+++                                                       
T Consensus       182 vtk~~~Dn~~Gt~~slldgi~ratg-------------------------------------------------------  206 (436)
T 3h9u_A          182 VTKSKFDNLYGCRESLVDGIKRATD-------------------------------------------------------  206 (436)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred             hhhhhhhccccchHHHHHHHHHhcC-------------------------------------------------------
Confidence            9999999999999999999987532                                                       


Q ss_pred             HHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHH
Q psy7896         320 AALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEE  399 (718)
Q Consensus       320 ~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Lee  399 (718)
                                              .++.||+|+|+|+|+||+.+|++|++|||+|+++|++|.+..++.+.|+.+.+++|
T Consensus       207 ------------------------~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~e  262 (436)
T 3h9u_A          207 ------------------------VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVED  262 (436)
T ss_dssp             ------------------------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHH
T ss_pred             ------------------------CcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHH
Confidence                                    45788999999999999999999999999999999999887778889999999999


Q ss_pred             HhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhc
Q psy7896         400 AAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCN  479 (718)
Q Consensus       400 ll~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~  479 (718)
                      +++++|||+++++++++|++++|+.||+|++|||+||++.|||+++|....+.+..++|++                   
T Consensus       263 al~~ADVVilt~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~~~~~~~~ir~~v-------------------  323 (436)
T 3h9u_A          263 VVEEAHIFVTTTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVKPQV-------------------  323 (436)
T ss_dssp             HTTTCSEEEECSSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHHHCSEEEEEETTE-------------------
T ss_pred             HHhhCCEEEECCCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHhhcCceEeecCCc-------------------
Confidence            9999999999999999999999999999999999999999999999988766777778877                   


Q ss_pred             ccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHH
Q psy7896         480 SLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETL  559 (718)
Q Consensus       480 ~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l  559 (718)
                                                                                                      
T Consensus       324 --------------------------------------------------------------------------------  323 (436)
T 3h9u_A          324 --------------------------------------------------------------------------------  323 (436)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCC
Q psy7896         560 LELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGH  639 (718)
Q Consensus       560 ~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~  639 (718)
                                                                          +.++++||-.|++...|+|||++|++||
T Consensus       324 ----------------------------------------------------d~y~~~dg~~I~LLaeGrLvNl~~~~Gh  351 (436)
T 3h9u_A          324 ----------------------------------------------------DRYTMANGRHIILLAEGRLVNLGCASGH  351 (436)
T ss_dssp             ----------------------------------------------------EEEECTTSCEEEEEGGGSCHHHHHSCCS
T ss_pred             ----------------------------------------------------eEEEcCCCCEEEEecCCCeecccCCCCC
Confidence                                                                3445688899999999999999999999


Q ss_pred             CcceechhHHhHHHHHHHHHhccC--CCCCc----eeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCC
Q psy7896         640 PSFVMSNSFTNQVLAQIELWTKHS--QYPVG----VYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKP  713 (718)
Q Consensus       640 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  713 (718)
                      ||||||+||+||+|||++||++++  +|++|    ||.|||+|||+||++||++||++||+||++|++|||+|.+|||||
T Consensus       352 p~~vm~~sf~~q~la~~~l~~~~~~~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~~~  431 (436)
T 3h9u_A          352 PSFVMSNSFCNQVLAQIELWTNRDTGKYPRGAKAQVYFLPKKLDEKVAALHLGKLGAKLTKLTPKQAEYINCPVDGPFKP  431 (436)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTTTSSCC---CCEEECCHHHHHHHHHHHHHHHTCCCCCCCHHHHHHTTSCTTCCCSC
T ss_pred             hHHHhhHHHHHHHHHHHHHHhCCCcccCCCCCCceeeeCCHHHHHHHHHHHHHHcCCccccCCHHHHHhcCCCcCCCCCc
Confidence            999999999999999999999987  99999    999999999999999999999999999999999999999999999


Q ss_pred             CCCCC
Q psy7896         714 DHYRY  718 (718)
Q Consensus       714 ~~~~~  718 (718)
                      |||||
T Consensus       432 ~~~~~  436 (436)
T 3h9u_A          432 DHYRY  436 (436)
T ss_dssp             TTCCC
T ss_pred             ccCCC
Confidence            99999

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=100.00  E-value=3e-124  Score=1028.17  Aligned_cols=419  Identities=53%  Similarity=0.907  Sum_probs=393.6

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||+|||++|+||++|||+||++|++|+++|||+|+||++|+|||+|||+|++||+++||||+||+||||||||||
T Consensus        16 v~d~~la~~g~~~i~~a~~~mp~l~~~r~~~~~~~pl~G~ri~~~lH~~~~Ta~l~~tL~~~GA~v~~~~~n~~stqd~~   95 (435)
T 3gvp_A           16 VKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEV   95 (435)
T ss_dssp             CSCGGGHHHHHHHHHHHHHTCHHHHHHHHHHSTTCTTTTCEEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSCCCHHH
T ss_pred             ccChhhhHHhHHHHHHHHHhCHHHHHHHHHHhccCCCCCCEEEEEEccHHHHHHHHHHHHHCCCEEEEEecCCCcChHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM  160 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~  160 (718)
                      ||||++.|||||||||||++||||||+++|.|++++| |||+||||||++++|++||+++++|+|++||||||       
T Consensus        96 aaal~~~gi~v~a~~g~~~~ey~~~~~~~~~~~~~~p-~~ilDdGgdl~~~~h~~~~~~~~~i~G~~EeTttG-------  167 (435)
T 3gvp_A           96 AAALAESGFPVFAWKGESEDDFWWCIDRCVNVEGWQP-NMILDDGGDLTHWIYKKYPNMFKKIKGIVEESVTG-------  167 (435)
T ss_dssp             HHHHHHHTCCEECCTTCCHHHHHHHHHHHHCBTTBCC-SEEEESSSHHHHHHHHHCHHHHHTCCEEEECCHHH-------
T ss_pred             HHHHHhcCCeEEEecCCCHHHHHHHHHHHHhccCCCC-cEEEecchHHHHHHHHHhHHHHhhcceeEeccchh-------
Confidence            9999999999999999999999999999999876655 99999999999999999999999999999999999       


Q ss_pred             HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896         161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV  240 (718)
Q Consensus       161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~  240 (718)
                                                                              |||||+|+++|+|.+||+|||||+
T Consensus       168 --------------------------------------------------------v~rl~~~~~~g~L~~Pvi~vnds~  191 (435)
T 3gvp_A          168 --------------------------------------------------------VHRLYQLSKAGKLCVPAMNVNDSV  191 (435)
T ss_dssp             --------------------------------------------------------HHHHTCC--CCCCCSCEEECTTCH
T ss_pred             --------------------------------------------------------HHHHHHHHHcCCCCCCEEEecchh
Confidence                                                                    677788878889999999999999


Q ss_pred             ccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHH
Q psy7896         241 TKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVA  320 (718)
Q Consensus       241 ~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~  320 (718)
                      +|++|||+|||++|+++++.|+++                                                        
T Consensus       192 tK~~fDn~yGt~~s~~~gi~rat~--------------------------------------------------------  215 (435)
T 3gvp_A          192 TKQKFDNLYCCRESILDGLKRTTD--------------------------------------------------------  215 (435)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHC--------------------------------------------------------
T ss_pred             hhhhhhhhhhhHHHHHHHHHHhhC--------------------------------------------------------
Confidence            999999999999999999998643                                                        


Q ss_pred             HHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHH
Q psy7896         321 ALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA  400 (718)
Q Consensus       321 ~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel  400 (718)
                                             ..+.||+|+|+|+|+||+.+|++|++|||+|+++|++|.+..++.++|+.+.+++++
T Consensus       216 -----------------------~~L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leea  272 (435)
T 3gvp_A          216 -----------------------MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEV  272 (435)
T ss_dssp             -----------------------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHH
T ss_pred             -----------------------ceecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHH
Confidence                                   356788999999999999999999999999999999998888888899999999999


Q ss_pred             hccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcc
Q psy7896         401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNS  480 (718)
Q Consensus       401 l~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~  480 (718)
                      ++.+|+|+++++|+++|++++|+.||+|++|||+||++.|+|+++|......+..++|++                    
T Consensus       273 l~~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~EId~~~L~~~~~~~~~ir~~v--------------------  332 (435)
T 3gvp_A          273 IRQVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVRSQV--------------------  332 (435)
T ss_dssp             TTTCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTTTBTGGGGCSTTCEEEEEETTE--------------------
T ss_pred             HhcCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCccCCHHHHHhhcceeEEEEcCe--------------------
Confidence            999999999999999999999999999999999999999999999876555666777777                    


Q ss_pred             cccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHH
Q psy7896         481 LFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLL  560 (718)
Q Consensus       481 ~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~  560 (718)
                                                                                                      
T Consensus       333 --------------------------------------------------------------------------------  332 (435)
T 3gvp_A          333 --------------------------------------------------------------------------------  332 (435)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccccCCCC
Q psy7896         561 ELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCAMGHP  640 (718)
Q Consensus       561 ~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~~~~~  640 (718)
                                                                         +.++++||..|++...|+|||++|+ |||
T Consensus       333 ---------------------------------------------------~~y~~~dg~~I~LLAeGrLvNl~~~-~hp  360 (435)
T 3gvp_A          333 ---------------------------------------------------DHVIWPDGKRIVLLAEGRLLNLSCS-TVP  360 (435)
T ss_dssp             ---------------------------------------------------EEEECTTSCEEEEEGGGSBHHHHHC-CCC
T ss_pred             ---------------------------------------------------eeEEcCCCcEEEEecCCCEeeecCC-CCc
Confidence                                                               2334688889999999999999999 599


Q ss_pred             cceechhHHhHHHHHHHHHhcc-CCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCC
Q psy7896         641 SFVMSNSFTNQVLAQIELWTKH-SQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPD  714 (718)
Q Consensus       641 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  714 (718)
                      |||||+||+||+|||+|||+++ ++|+++||.|||+|||+||++||++||++||+||++|++|||+|.+||||||
T Consensus       361 ~~vm~~sf~~q~la~~~l~~~~~~~~~~~v~~lp~~~d~~vA~~~l~~~g~~~~~lt~~q~~y~~~~~~g~~k~~  435 (435)
T 3gvp_A          361 TFVLSITATTQALALIELYNAPEGRYKQDVYLLPKKMDEYVASLHLPTFDAHLTELTDEQAKYLGLNKNGPFKPN  435 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCTTTSCSSEEECCHHHHHHHHHHHGGGGTCCCCCCCHHHHHHHTCCTTCCCSCC
T ss_pred             HHHHhHHHHHHHHHHHHHHhCcccccCCCeeeCCHHHHHHHHHHHHHhcCCEeccCCHHHHHHcCCCCCCCCCCC
Confidence            9999999999999999999996 6999999999999999999999999999999999999999999999999997

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=100.00  E-value=1.7e-117  Score=988.99  Aligned_cols=461  Identities=60%  Similarity=0.952  Sum_probs=403.5

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||+|||++|+||++|||+||++|++|+++|||||+||++|||||+|||+|+|||+++||||+|||||||||||||
T Consensus        19 v~d~~la~~g~~~i~~a~~~mp~l~~~r~~~~~~~pl~g~ri~~~lh~t~~ta~l~~tl~~~GA~v~~~~~n~~stqd~~   98 (488)
T 3ond_A           19 VKDMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFSTQDHA   98 (488)
T ss_dssp             ESCGGGHHHHHHHHHHHHHTCHHHHHHHHHHGGGCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCCCHHH
T ss_pred             ccChhhhHHhhHHHHHHHhhCHHHHHHHHHHhcCCCCCCCEEEEEeccHHHHHHHHHHHHHcCCeEEEecCCCCCCcHHH
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhh-hhcccCCCcccch----hHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQF-LSEIRGISEETTT----GVH  155 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~-~~~~~g~~eet~~----g~~  155 (718)
                      ||||++.|||||||||||++|||||++++|+|++|.+||||+||||||++++|+..... -.+..|...++++    -.+
T Consensus        99 aaa~~~~g~~v~a~~ge~~~ey~~~~~~~l~~~~~~~p~~i~Ddggd~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (488)
T 3ond_A           99 AAAIARDSAAVFAWKGETLQEYWWCTERALDWGPGGGPDLIVDDGGDTTLLIHEGVKAEEIYEKSGQFPDPDSTDNAEFK  178 (488)
T ss_dssp             HHHHHHHTCEEEECTTCCHHHHHHHHHHHHCCCTTCCCSEEEESSSHHHHHHHHHHHHHHHHHHHCCCCCGGGCCCHHHH
T ss_pred             HHHHHhcCCeEEEeCCCCHHHHHHHHHHHHhcccCCCCCEEEECchHHHHHHHcchhhhcchhhccccCCCCCCCchHHH
Confidence            99999999999999999999999999999999888777999999999999999843200 0001112222221    123


Q ss_pred             hHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEE
Q psy7896         156 NLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN  235 (718)
Q Consensus       156 ~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~  235 (718)
                      -|++.++...                           ...+.+|+++.++++|++|+|++|++||++|+++|.|.+||+|
T Consensus       179 ~~~~~~~~~~---------------------------~~~~~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPvin  231 (488)
T 3ond_A          179 IVLSIIKEGL---------------------------KTDPKRYHKMKDRVVGVSEETTTGVKRLYQMQANGTLLFPAIN  231 (488)
T ss_dssp             HHHHHHHHHH---------------------------TTCTTHHHHHHHHCCEEEECSHHHHHHHHHHHHTTCCCSCEEE
T ss_pred             HHHHHHHHHH---------------------------hhCcchhHHHHhhcceeEecccccHHHHHHHHHcCCCCCceec
Confidence            3444443221                           1123578899999999999999999999999999999999999


Q ss_pred             ecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhh
Q psy7896         236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL  315 (718)
Q Consensus       236 v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L  315 (718)
                      ||||.+|++|||+|||++|+++++.|.++                                                   
T Consensus       232 vnDs~tK~~fDn~yGt~~sl~dgi~r~tg---------------------------------------------------  260 (488)
T 3ond_A          232 VNDSVTKSKFDNLYGCRHSLPDGLMRATD---------------------------------------------------  260 (488)
T ss_dssp             CTTSHHHHTTHHHHHHHHHHHHHHHHHHC---------------------------------------------------
T ss_pred             ccchhhhhHhhhhccccHHHHHHHHHHcC---------------------------------------------------
Confidence            99999999999999999999999988544                                                   


Q ss_pred             hHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec
Q psy7896         316 DEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT  395 (718)
Q Consensus       316 ~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~  395 (718)
                                                  ..+.||+|+|+|+|.||+.+|++|+++|++|+++|++|.+..++.+.|+.+.
T Consensus       261 ----------------------------~~L~GKtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~  312 (488)
T 3ond_A          261 ----------------------------VMIAGKVAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVL  312 (488)
T ss_dssp             ----------------------------CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC
T ss_pred             ----------------------------CcccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccC
Confidence                                        3467788888888889999999999999999999999988777778899999


Q ss_pred             CHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccc-cceeeecCCcccCccccchhhHHH
Q psy7896         396 TMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA-VEKVNVKPQVSPTSRTKHLTTEAL  474 (718)
Q Consensus       396 ~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~-l~~~~v~P~V~v~s~e~~~~~eal  474 (718)
                      +++++++.+|+|+.++++.++++.++++.||++++++|+|+++.|++.+.+.... +.+..+++++              
T Consensus       313 ~lee~~~~aDvVi~atG~~~vl~~e~l~~mk~gaiVvNaG~~~~Ei~~~~l~~~~~v~~~~i~~~v--------------  378 (488)
T 3ond_A          313 TLEDVVSEADIFVTTTGNKDIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGLETHPGVKRITIKPQT--------------  378 (488)
T ss_dssp             CGGGTTTTCSEEEECSSCSCSBCHHHHTTSCTTEEEEESSSTTTTBTHHHHHTSTTCEEEEEETTE--------------
T ss_pred             CHHHHHHhcCEEEeCCCChhhhhHHHHHhcCCCeEEEEcCCCCcccchHHHHHhhhhheEEeeeeE--------------
Confidence            9999999999999999999999999999999999999999998889888776531 1333344443              


Q ss_pred             HhhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHH
Q psy7896         475 LATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAV  554 (718)
Q Consensus       475 ~n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~  554 (718)
                                                                                                      
T Consensus       379 --------------------------------------------------------------------------------  378 (488)
T 3ond_A          379 --------------------------------------------------------------------------------  378 (488)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC-CCeEEEecCCccccc
Q psy7896         555 LIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN-GNHIILLAEGRLVNL  633 (718)
Q Consensus       555 L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~-~~~~i~ddggdl~~~  633 (718)
                                                                               ....+++ +.-+.+-..|++||+
T Consensus       379 ---------------------------------------------------------~~~~~~~fg~aI~lLaeGRIVNl  401 (488)
T 3ond_A          379 ---------------------------------------------------------DRWVFPETNTGIIILAEGRLMNL  401 (488)
T ss_dssp             ---------------------------------------------------------EEEECTTTCCEEEEEGGGSCHHH
T ss_pred             ---------------------------------------------------------EEEEecchHHHHHHHcCCcEEEE
Confidence                                                                     1122455 677778888999999


Q ss_pred             cccCCCCcceechhHHhHHHHHHHHHhccC--CCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCC
Q psy7896         634 GCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPY  711 (718)
Q Consensus       634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  711 (718)
                      +|+.|||+||||+||+||+|||++||++++  +|++|||.|||+|||+||++||++||++||+||++|++|||+|.+|||
T Consensus       402 sS~~G~p~~vm~~sfa~Q~la~~~l~~~~~~~~~~~gv~~lp~~ld~~vA~l~l~~~g~~l~~lt~~q~~y~~~~~~g~~  481 (488)
T 3ond_A          402 GCATGHPSFVMSCSFTNQVIAQLELWNEKSSGKYEKKVYVLPKHLDEKVAALHLEKLGAKLTKLSKDQADYISVPVEGPY  481 (488)
T ss_dssp             HHSCCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHHHHTTCCTTSCC
T ss_pred             ecCcccCcccccccHHHHHHHHHHHHhCCCccccCCCceeCCHHHHHHHHHHhchhcCCchhhcCHHHHHHcCCCCCCCC
Confidence            999999999999999999999999999986  999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q psy7896         712 KPDHYRY  718 (718)
Q Consensus       712 ~~~~~~~  718 (718)
                      |||||||
T Consensus       482 k~~~~~y  488 (488)
T 3ond_A          482 KPFHYRY  488 (488)
T ss_dssp             SCTTCCC
T ss_pred             CccCCCC
Confidence            9999999

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=8.8e-100  Score=847.60  Aligned_cols=460  Identities=52%  Similarity=0.876  Sum_probs=398.8

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||+||||+|+||++|||+||++|++|+++|||||+||++|+|||+|||+|+|||+++||||+|||||||||||||
T Consensus         8 v~d~~la~~g~~~i~~a~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~tL~~~Ga~v~~~~~n~~stqd~~   87 (479)
T 1v8b_A            8 VKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYA   87 (479)
T ss_dssp             CSCGGGHHHHHHHHHHHGGGCHHHHHHHHHSTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSSSCCCHHH
T ss_pred             ecChhhhhHhHHHHHHHHhHCHHHHHHHHHhhccCCCCCCEEEEEeccHHHHHHHHHHHHHCCCEEEEecCCCCCchHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCeEEEecCCCHHHHHHHHHHHccCCCC--CCceeEecCcchhHHHHHhhChhhhh--cccCCCcccc---h
Q psy7896          81 AAAIAA-RGVAVYAWKGETDEEYVWCIEQTLVFPDG--KPLNMILDDGGDLTNLVHEKYPQFLS--EIRGISEETT---T  152 (718)
Q Consensus        81 aaal~~-~gv~v~a~~~~~~~ey~~~~~~~~~~~~~--~~~~~i~Ddggdl~~~~~~~~~~~~~--~~~g~~eet~---~  152 (718)
                      ||||++ .|||||||||||.+|||||++++|+|+++  ++||||+||||||++++|....-...  + .+...+.+   +
T Consensus        88 aaal~~~~gi~v~a~~g~~~~ey~~~~~~~l~~~~~~~~~~~~i~ddggd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  166 (479)
T 1v8b_A           88 AAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEE-KNILPDPEKAKN  166 (479)
T ss_dssp             HHHHTTSTTEEEECCTTCCHHHHHHHHHHHHCCSSSSSCSCSEEEESSSHHHHHHHHHHHHHHHHHH-HCCCCCGGGCSS
T ss_pred             HHHHhhcCCceEEEeCCCCHHHHHHHHHHHhcCcccccCCCCEEEeccchHHHHHHcchhhhhcccc-ccccCCccccCc
Confidence            999999 79999999999999999999999999876  23599999999999999943210000  0 01111111   1


Q ss_pred             -hHHhHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccc
Q psy7896         153 -GVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGV  231 (718)
Q Consensus       153 -g~~~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~  231 (718)
                       .-+-||..++..                           +...+.+++.+.+++.|++|+|.+|++|+++|.+.|.+.+
T Consensus       167 ~~~~~~~~~l~~~---------------------------la~~~~~~~~l~~~l~gi~eet~~Gvd~l~a~~~~Gilv~  219 (479)
T 1v8b_A          167 EEERCFLTLLKNS---------------------------ILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLF  219 (479)
T ss_dssp             HHHHHHHHHHHHH---------------------------HTTCTTHHHHHHTTCCEEEECSHHHHHHHHHHHHTTCCCS
T ss_pred             hHHHHHHHHHHHh---------------------------hhcChhhHHHHhcCeEEEEEeeCccHhHHHHHHHcCCEEe
Confidence             002233333211                           0112356777778999999999999999999999999999


Q ss_pred             eEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhh
Q psy7896         232 PAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME  311 (718)
Q Consensus       232 Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~Avae  311 (718)
                      |+.++|+|..+.+|+|.||+.+++.++|.|.                                                 
T Consensus       220 p~~~vn~sVae~l~r~~~~~~~~l~~gw~r~-------------------------------------------------  250 (479)
T 1v8b_A          220 TAINVNDAVTKQKYDNVYGCRHSLPDGLMRA-------------------------------------------------  250 (479)
T ss_dssp             EEEECTTSHHHHTTHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred             ccCCccHHHHHHHHhchHhHHHHHhhhhhhc-------------------------------------------------
Confidence            9999999999999999999999887776542                                                 


Q ss_pred             hhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcC
Q psy7896         312 GYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG  391 (718)
Q Consensus       312 Gf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G  391 (718)
                                                    .+.++.||+|||||+|+||+.+|++|++|||+|+++|++|.+..++.+.|
T Consensus       251 ------------------------------~~~~l~GktVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g  300 (479)
T 1v8b_A          251 ------------------------------TDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEG  300 (479)
T ss_dssp             ------------------------------HCCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTT
T ss_pred             ------------------------------cccccCCCEEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcC
Confidence                                          23568899999999999999999999999999999999987766777889


Q ss_pred             ceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc-cccceeeecCCcccCccccchh
Q psy7896         392 YEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK-NAVEKVNVKPQVSPTSRTKHLT  470 (718)
Q Consensus       392 ~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~-~~l~~~~v~P~V~v~s~e~~~~  470 (718)
                      +.+.++++++++||+|+++++++++|+++.|+.||+|++|||+||++.|||.++|.+ .+++...+++.++++       
T Consensus       301 ~~~~~l~ell~~aDiVi~~~~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~a~lDv~-------  373 (479)
T 1v8b_A          301 FNVVTLDEIVDKGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQVDRI-------  373 (479)
T ss_dssp             CEECCHHHHTTTCSEEEECCSSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEETTEEEE-------
T ss_pred             CEecCHHHHHhcCCEEEECCChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEeeeEEEE-------
Confidence            999999999999999999999999999999999999999999999998899999987 456666666655322       


Q ss_pred             hHHHHhhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchh
Q psy7896         471 TEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTV  550 (718)
Q Consensus       471 ~eal~n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~  550 (718)
                                                                                                      
T Consensus       374 --------------------------------------------------------------------------------  373 (479)
T 1v8b_A          374 --------------------------------------------------------------------------------  373 (479)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             hHHHHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcc
Q psy7896         551 QTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRL  630 (718)
Q Consensus       551 ~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl  630 (718)
                                                                                      ..+++..++....+++
T Consensus       374 ----------------------------------------------------------------plp~~~~l~~l~~~nv  389 (479)
T 1v8b_A          374 ----------------------------------------------------------------TLPNGNKIIVLARGRL  389 (479)
T ss_dssp             ----------------------------------------------------------------ECTTSCEEEEEGGGSB
T ss_pred             ----------------------------------------------------------------ECCCCCeeeEecCCCE
Confidence                                                                            1233445666666789


Q ss_pred             ccccccCCCCcceechhHHhHHHHHHHHHhccC--CCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCC
Q psy7896         631 VNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHS--QYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIE  708 (718)
Q Consensus       631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  708 (718)
                      +++.|++|||+++|+.||++|+++++++|.+..  .++++||.||+.+|++||.+||+++|+++++||++|.+|++++.+
T Consensus       390 v~tH~atghp~e~~~~s~a~~~~~ni~~~~~g~~~~l~n~V~~lp~~~de~va~l~L~~lG~~l~~lt~~q~~yi~v~~~  469 (479)
T 1v8b_A          390 LNLGCATGHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKS  469 (479)
T ss_dssp             HHHHSSCCSCHHHHHHHHHHHHHHHHHHHHTTTSSSCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHHHHHTCCTT
T ss_pred             EEEeccCCCCchhHHHHHHHHHHHHHHHHHcCCCCcCCcceEeCChhhHHHHHHHHHHHcCChHhhcChhhhhhEeeeeC
Confidence            999999999999999999999999999999988  999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCC
Q psy7896         709 GPYKPDHYRY  718 (718)
Q Consensus       709 ~~~~~~~~~~  718 (718)
                      ||||||||||
T Consensus       470 g~~~~~~~~~  479 (479)
T 1v8b_A          470 GPFKSNEYRY  479 (479)
T ss_dssp             SCCSCTTCCC
T ss_pred             CCCCcccCCC
Confidence            9999999999

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=100.00  E-value=1.8e-96  Score=825.16  Aligned_cols=458  Identities=58%  Similarity=0.926  Sum_probs=396.3

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||+|||++|+||++|||+||++|++|+++|||||+||++|+|||+|||+|+|||+++||||+|||||||||||||
T Consensus        22 v~d~~la~~g~~~i~~a~~~mp~l~~~~~~~~~~~pl~g~~i~~~~h~~~~ta~l~~~l~~~ga~v~~~~~n~~stqd~~  101 (494)
T 3ce6_A           22 IADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFSTQDHA  101 (494)
T ss_dssp             CSCGGGHHHHHHHHHHHHHHCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCCCHHH
T ss_pred             ecChhhhHHhHHHHHHHHHHCHHHHHHHHHhhccCCCCCCEEEEEeecHHHHHHHHHHHHHCCCeEEEeecCCCCchHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhC---------CCeEEEecCCCHHHHHHHHHHHccCCCC-CCceeEecCcchhHHHHHhhChhhhhcccCCCccc
Q psy7896          81 AAAIAAR---------GVAVYAWKGETDEEYVWCIEQTLVFPDG-KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEET  150 (718)
Q Consensus        81 aaal~~~---------gv~v~a~~~~~~~ey~~~~~~~~~~~~~-~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet  150 (718)
                      ||||++.         |||||||||||.+|||||++++|+|+++ +|+|||+||||||++++|....-...   +...+.
T Consensus       102 aaa~~~~~~~~~~~~~g~~v~a~~g~~~~~y~~~~~~~~~~~~~~~~~~~i~ddggd~~~~~~~~~~~~~~---~~~~~~  178 (494)
T 3ce6_A          102 AAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLTWPDPDKPANMILDDGGDATMLVLRGMQYEKA---GVVPPA  178 (494)
T ss_dssp             HHHHHHCSSCCSSSCCSCCEECCTTCCHHHHHHHHHHHHCCSSTTSCCCEEEESSSHHHHHHHHHHHHHHH---TSCCCC
T ss_pred             HHHHhhhccccccCCCCeEEEEeCCCCHHHHHHHHHHHHhccccCCCceEEeecchHHHHHHHcchhhhcc---cccCCc
Confidence            9999999         9999999999999999999999999876 56699999999999999954321111   222222


Q ss_pred             ch----hHHhHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhc
Q psy7896         151 TT----GVHNLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKE  226 (718)
Q Consensus       151 ~~----g~~~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~  226 (718)
                      ++    -.+-|++.+|..                           +...+.+++.....+.|++|+|++|++|++.|.+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~---------------------------l~~~~~~~p~~~~~i~GvveetgtGVd~l~a~~~~  231 (494)
T 3ce6_A          179 EEDDPAEWKVFLNLLRTR---------------------------FETDKDKWTKIAESVKGVTEETTTGVLRLYQFAAA  231 (494)
T ss_dssp             CTTSCHHHHHHHHHHHHH---------------------------HHHCSSHHHHHHHHCCCEEECSHHHHHHHHHHHHT
T ss_pred             ccCchHHHHHHHHHHHHH---------------------------hhcCcccchhhhcCeEEEEEEeCCChhHHHHHHHc
Confidence            21    123344444322                           11223566777789999999999999999999999


Q ss_pred             CCccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh
Q psy7896         227 NKLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL  306 (718)
Q Consensus       227 g~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v  306 (718)
                      |.+.+|+.++|++..|..|+|.|+|++++++++.|++                                           
T Consensus       232 Gilv~~~~~vn~sVae~~~r~l~~~~~s~~~g~~r~~-------------------------------------------  268 (494)
T 3ce6_A          232 GDLAFPAINVNDSVTKSKFDNKYGTRHSLIDGINRGT-------------------------------------------  268 (494)
T ss_dssp             TCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHHHH-------------------------------------------
T ss_pred             CCEEEecCCccHHHHHHHHhhhhhhhhhhhHHHHhcc-------------------------------------------
Confidence            9999999999999999999999999999988876632                                           


Q ss_pred             hhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH
Q psy7896         307 QASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ  386 (718)
Q Consensus       307 ~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~  386 (718)
                                                          +..+.|++|+|+|+|.||+.+|++++++|++|+++|++|.+...
T Consensus       269 ------------------------------------~~~l~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~  312 (494)
T 3ce6_A          269 ------------------------------------DALIGGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQ  312 (494)
T ss_dssp             ------------------------------------CCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred             ------------------------------------CCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence                                                12467899999999999999999999999999999999987767


Q ss_pred             HhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccc
Q psy7896         387 ASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRT  466 (718)
Q Consensus       387 a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e  466 (718)
                      +.+.|+.+.+++++++.+|+|++++++.++|+.+.++.||++++++|+||++.++|.++|....++...+.+.++++   
T Consensus       313 A~~~Ga~~~~l~e~l~~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~~~ldv~---  389 (494)
T 3ce6_A          313 AMMEGFDVVTVEEAIGDADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVKPQVDLW---  389 (494)
T ss_dssp             HHHTTCEECCHHHHGGGCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEETTEEEE---
T ss_pred             HHHcCCEEecHHHHHhCCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEEEEEEEe---
Confidence            77889988899999999999999999999999999999999999999999987788888765334333333333110   


Q ss_pred             cchhhHHHHhhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeee
Q psy7896         467 KHLTTEALLATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCL  546 (718)
Q Consensus       467 ~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~l  546 (718)
                                                                                                      
T Consensus       390 --------------------------------------------------------------------------------  389 (494)
T 3ce6_A          390 --------------------------------------------------------------------------------  389 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cchhhHHHHHHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC-CCeEEEe
Q psy7896         547 HMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN-GNHIILL  625 (718)
Q Consensus       547 h~~~~Ta~L~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~-~~~~i~d  625 (718)
                                                                                          .+++ +..+.+-
T Consensus       390 --------------------------------------------------------------------~~~~~~~~l~LL  401 (494)
T 3ce6_A          390 --------------------------------------------------------------------TFGDTGRSIIVL  401 (494)
T ss_dssp             --------------------------------------------------------------------ECTTTCCEEEEE
T ss_pred             --------------------------------------------------------------------ecCCcchHHHHH
Confidence                                                                                1122 3345566


Q ss_pred             cCCccccccccCCCCcceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCC
Q psy7896         626 AEGRLVNLGCAMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGL  705 (718)
Q Consensus       626 dggdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  705 (718)
                      ..|.+++++|.++||+++|+.+|.+|++.+++.|.++..+...|+++|+++|++||.+||+++|++|++||++|++||++
T Consensus       402 ~~grlvnL~~~TPH~a~~~~~s~~~qa~~ai~~~~~g~~~~~~V~~~P~~~De~vA~lhL~~lg~~l~~lt~~q~~y~~v  481 (494)
T 3ce6_A          402 SEGRLLNLGNATGHPSFVMSNSFANQTIAQIELWTKNDEYDNEVYRLPKHLDEKVARIHVEALGGHLTKLTKEQAEYLGV  481 (494)
T ss_dssp             GGGSCHHHHHSCCSCHHHHHHHHHHHHHHHHHHHHTGGGCCSSEECCCHHHHHHHHHHHHHHHTCCCCCCCHHHHHHHTC
T ss_pred             hCCCEEeccCCCCCccccchHHHHHHHHHHHHHHHcCCCCCCEEEECHHHHHHHHHHhhHHHHHHHHHHhChhHHHHccc
Confidence            67899999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCC
Q psy7896         706 PIEGPYKPDHYRY  718 (718)
Q Consensus       706 ~~~~~~~~~~~~~  718 (718)
                      +.+||||||||||
T Consensus       482 ~~~G~~k~~~~~~  494 (494)
T 3ce6_A          482 DVEGPYKPDHYRY  494 (494)
T ss_dssp             CTTSCCSCTTCCC
T ss_pred             ccCCCCCcccCCC
Confidence            9999999999999

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=3.4e-95  Score=813.31  Aligned_cols=453  Identities=60%  Similarity=0.946  Sum_probs=395.5

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||+|||++|+||++|||+||++|++|+++|||+|+||++|+|||+||++|++||+++||+|+|++|||||||||+
T Consensus        37 v~d~~la~~g~~~i~~a~~~mp~l~~~~~~~~~~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~~~n~~stqd~~  116 (494)
T 3d64_A           37 VADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWASCNIFSTQDHA  116 (494)
T ss_dssp             CSCGGGHHHHHHHHHHHGGGCHHHHHHHHHTTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSSSCCCHHH
T ss_pred             ecchhhhhHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEEecCCcccchHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhC-----hhhhhcccCCCcccchhHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKY-----PQFLSEIRGISEETTTGVH  155 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~-----~~~~~~~~g~~eet~~g~~  155 (718)
                      ||||++.|||||||||||.+|||||++++|+|++|++|++|+|||||++.++|...     +..+...      ++..-+
T Consensus       117 aaal~~~gi~v~a~kget~~ey~~~~~~~l~~~~~~~p~~i~Ddggd~~~~~~~~~~~~~~~~~~~~~------~~~~~~  190 (494)
T 3d64_A          117 AAAIVEAGTPVFAFKGESLDEYWEFSHRIFEWPNGEFANMILDDGGDATLLLILGSKAEKDRSVIARP------TNEEEV  190 (494)
T ss_dssp             HHHHHHTTCCEECCTTCCHHHHHHHHHHTTCCSTTCCCCEEEESSSHHHHHHHHHHHHHHCGGGGTCC------CSHHHH
T ss_pred             HHHHHhCCceEEEecCCCHHHHHHHHHHHhccccCCCCceeecCCcceeehhhccchhhccccccCCc------cchhHH
Confidence            99999999999999999999999999999999888767999999999999999332     2222211      110001


Q ss_pred             hHHHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEE
Q psy7896         156 NLYKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAIN  235 (718)
Q Consensus       156 ~~~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~  235 (718)
                      -||..+.+.                           +...+.+++.+.+++.|++|+|.+|++|++++.+.|.+-+|+.+
T Consensus       191 ~l~~~l~~~---------------------------la~~~~~~~~l~~~l~gi~eet~~Gvd~l~a~~~~Gilv~n~~~  243 (494)
T 3d64_A          191 ALFKSIERH---------------------------LEIDGSWYSKRLAHIKGVTEETTTGVHRLYQMEKDGRLPFPAFN  243 (494)
T ss_dssp             HHHHHHHHH---------------------------HTTCTTTTHHHHTTCCCEEECSHHHHHHHHHHHHTTCCCSCEEE
T ss_pred             HHHHHHHHh---------------------------hccChHhHHHHhhCcEEEEEEcccCHhhHHHHHHCCCEEEECCC
Confidence            122222111                           01112456677789999999999999999889999999999999


Q ss_pred             ecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhh
Q psy7896         236 VNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEL  315 (718)
Q Consensus       236 v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L  315 (718)
                      +|+|..+..|+|.||++++++++|.+.                                                     
T Consensus       244 vn~sVae~l~r~~~~~~~~l~~gw~~~-----------------------------------------------------  270 (494)
T 3d64_A          244 VNDSVTKSKFDNLYGCRESLVDGIKRA-----------------------------------------------------  270 (494)
T ss_dssp             CTTSHHHHHHHHHHHHHTTHHHHHHHH-----------------------------------------------------
T ss_pred             ccHHHHHHHHhhhHhhhhhhhhhhhhc-----------------------------------------------------
Confidence            999999999999999998887766542                                                     


Q ss_pred             hHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec
Q psy7896         316 DEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT  395 (718)
Q Consensus       316 ~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~  395 (718)
                                                .+.++.||+|||||+|+||+.+|++|++|||+|+++|++|.+..++.+.|+.+.
T Consensus       271 --------------------------~g~~L~GktVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~  324 (494)
T 3d64_A          271 --------------------------TDVMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVV  324 (494)
T ss_dssp             --------------------------HCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEEC
T ss_pred             --------------------------cccccCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeC
Confidence                                      245788999999999999999999999999999999999877666677899999


Q ss_pred             CHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHH
Q psy7896         396 TMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALL  475 (718)
Q Consensus       396 ~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~  475 (718)
                      ++++++++||+|+++++|+++|+++.|+.||+|++|||+||++.+||.++| + +++...+++.++++            
T Consensus       325 ~l~ell~~aDiVi~~~~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~-AL~~g~I~~~~Dv~------------  390 (494)
T 3d64_A          325 TMEYAADKADIFVTATGNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-R-QYQWENIKPQVDHI------------  390 (494)
T ss_dssp             CHHHHTTTCSEEEECSSSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-T-TSEEEEEETTEEEE------------
T ss_pred             CHHHHHhcCCEEEECCCcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-H-hhhcCccceeEEEE------------
Confidence            999999999999999999999999999999999999999999877899999 4 56666665555221            


Q ss_pred             hhhcccccccccccccCCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHH
Q psy7896         476 ATCNSLFKYSLVNTIHEAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVL  555 (718)
Q Consensus       476 n~~~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L  555 (718)
                                                                                                      
T Consensus       391 --------------------------------------------------------------------------------  390 (494)
T 3d64_A          391 --------------------------------------------------------------------------------  390 (494)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             HHHHHHcCCeEEeeccCcCCchHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccccc
Q psy7896         556 IETLLELGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGC  635 (718)
Q Consensus       556 ~~~l~~~GA~v~~~~~nplstqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~  635 (718)
                                                                                 .+|++..+.....++++++.|
T Consensus       391 -----------------------------------------------------------plp~~~pL~~l~~~nvv~tH~  411 (494)
T 3d64_A          391 -----------------------------------------------------------IFPDGKRVILLAEGRLVNLGC  411 (494)
T ss_dssp             -----------------------------------------------------------ECTTSCEEEEEGGGSBHHHHT
T ss_pred             -----------------------------------------------------------ECCCCCchhhcCCCCEEEEeC
Confidence                                                                       123444566665678899999


Q ss_pred             cCCCCcceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCC
Q psy7896         636 AMGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDH  715 (718)
Q Consensus       636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  715 (718)
                      ++|||+++|+.+|++|+++++++|.+...+++.||.||+++|++||.+||+++|+++++||++|++|++++.+|||||||
T Consensus       412 atg~~~~~~~~~~a~~~~~ni~~~~~g~~~~n~V~~lp~~~d~~va~l~L~~~g~~~~~l~~~q~~y~~v~~~g~~~~~~  491 (494)
T 3d64_A          412 ATGHPSFVMSNSFTNQTLAQIELFTRGGEYANKVYVLPKHLDEKVARLHLARIGAQLSELSDDQAAYIGVSKAGPFKPDH  491 (494)
T ss_dssp             SCCSCHHHHHHHHHHHHHHHHHHHHHGGGSCSSEEECCHHHHHHHHHHHHTTTTCCCCCCCHHHHHHHTCCTTSCCSCTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeCChhHHHHHHHHHHHHcCChHHhhChhhHHhEeeccCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q psy7896         716 YRY  718 (718)
Q Consensus       716 ~~~  718 (718)
                      |||
T Consensus       492 ~~~  494 (494)
T 3d64_A          492 YRY  494 (494)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            999

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=1.2e-44  Score=398.32  Aligned_cols=134  Identities=57%  Similarity=0.828  Sum_probs=128.0

Q ss_pred             cccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCch
Q psy7896         498 VHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQ  577 (718)
Q Consensus       498 ~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstq  577 (718)
                      .|.|+|++|+++|+++|+||+++||+||+||++|..+|||+|+||++|||||+|||+|++||+++||+|+||||||||||
T Consensus         4 ~~~v~d~~la~~G~~~i~~ae~~MP~L~~~r~~~~~~kPl~G~rI~~~lH~t~~TavlietL~a~GAev~~~~cN~~STq   83 (464)
T 3n58_A            4 SMVVKDISLADWGRKELDIAETEMPGLMAAREEFGKSQPLKGARISGSLHMTIQTAVLIETLKVLGAEVRWASCNIFSTQ   83 (464)
T ss_dssp             -CEESCGGGHHHHHHHHHHHHTTCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCCC
T ss_pred             CccccCchhHHHHHHHHHHHHhhCHHHHHHHHHHhccCCCCCCEEEEEEecHHHHHHHHHHHHHcCCeEEEecCCCCCCc
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC--CCeEEEecCCccccccc
Q psy7896         578 DHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN--GNHIILLAEGRLVNLGC  635 (718)
Q Consensus       578 d~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~--~~~~i~ddggdl~~~~~  635 (718)
                      |||||||++.||+||||||||.||||||++++|+    |+|  +||||+||||||+++.-
T Consensus        84 d~~aaal~~~gi~v~A~kget~eey~~~~~~~l~----~~~~~~p~~ilDDGgDl~~~~h  139 (464)
T 3n58_A           84 DHAAAAIAATGTPVFAVKGETLEEYWTYTDQIFQ----WPDGEPSNMILDDGGDATMYIL  139 (464)
T ss_dssp             HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHTTC----CTTSCCCSEEEESSSHHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHHc----ccCCCCCCEEEECchHHHHHHH
Confidence            9999999999999999999999999999999994    454  49999999999998653

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=100.00  E-value=2.1e-44  Score=401.63  Aligned_cols=134  Identities=55%  Similarity=0.829  Sum_probs=129.0

Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST  576 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst  576 (718)
                      ..|.|+|++|+++|+++|+||+++||+||.||++|..+|||+|+||++|||||+|||+|++||+++||+|+|||||||||
T Consensus        15 ~~~~v~d~~la~~g~~~i~~a~~~mp~l~~~r~~~~~~~pl~g~ri~~~lh~t~~ta~l~~tl~~~GA~v~~~~~n~~st   94 (488)
T 3ond_A           15 REYKVKDMSQADFGRLEIELAEVEMPGLMASRSEFGPSQPFKGAKITGSLHMTIQTAVLIETLTALGAEVRWCSCNIFST   94 (488)
T ss_dssp             CEEEESCGGGHHHHHHHHHHHHHTCHHHHHHHHHHGGGCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCC
T ss_pred             CcccccChhhhHHhhHHHHHHHhhCHHHHHHHHHHhcCCCCCCCEEEEEeccHHHHHHHHHHHHHcCCeEEEecCCCCCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC--CCeEEEecCCcccccc
Q psy7896         577 QDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN--GNHIILLAEGRLVNLG  634 (718)
Q Consensus       577 qd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~--~~~~i~ddggdl~~~~  634 (718)
                      ||||||||++.||+||||||||+||||||++++|+    |+|  +||||+||||||+++.
T Consensus        95 qd~~aaa~~~~g~~v~a~~ge~~~ey~~~~~~~l~----~~~~~~p~~i~Ddggd~~~~~  150 (488)
T 3ond_A           95 QDHAAAAIARDSAAVFAWKGETLQEYWWCTERALD----WGPGGGPDLIVDDGGDTTLLI  150 (488)
T ss_dssp             CHHHHHHHHHHTCEEEECTTCCHHHHHHHHHHHHC----CCTTCCCSEEEESSSHHHHHH
T ss_pred             cHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHHh----cccCCCCCEEEECchHHHHHH
Confidence            99999999999999999999999999999999994    555  5999999999999865

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=100.00  E-value=5.5e-44  Score=393.30  Aligned_cols=133  Identities=66%  Similarity=1.091  Sum_probs=126.8

Q ss_pred             cccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCch
Q psy7896         498 VHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQ  577 (718)
Q Consensus       498 ~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstq  577 (718)
                      .|.|+|++|+++|+++|+||+++||+||+||++|..+|||+|+||++|||||+|||+|+++|+++||+|+||||||||||
T Consensus         2 ~~~v~d~~la~~g~~~i~~a~~~mp~l~~~r~~~~~~~pl~g~ri~~~lh~~~~Ta~l~~tL~~~GA~v~~~~~n~~stq   81 (436)
T 3h9u_A            2 MYKVRDISLAEWGRRELELAENEMPGLMELRREYGPSKPLKGAKIAGCLHMTMQTAVLIETLVELGAEVRWASCNIFSTQ   81 (436)
T ss_dssp             -CEESCGGGHHHHHHHHHHHHHHCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTTCC
T ss_pred             CccccChhhhHhhhHHHHHHHhhCHHHHHHHHHHhccCCCCCCEEEEEeccHHHHHHHHHHHHHcCCEEEEecCCCCCCc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCceEEEeeCCChHHHHHHHHHHh-hcceecCC--CCeEEEecCCcccccc
Q psy7896         578 DHAAAAIAARGVAVYAWKGETDEEYVWCIEQTL-VDRYTLPN--GNHIILLAEGRLVNLG  634 (718)
Q Consensus       578 d~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l-~~~~~~~~--~~~~i~ddggdl~~~~  634 (718)
                      |||||||++.||+||||||||+|||||||+++| +    |++  +||||+||||||+++.
T Consensus        82 d~~aaal~~~gi~v~a~~ge~~~ey~~~~~~~l~~----~~~~~~p~~ilDdGgdl~~~~  137 (436)
T 3h9u_A           82 DHAAAAIAKRGIPVFAWKGETEEEYMWCMKQTLKG----FSGDGYPNMLLDDGGDLTNYV  137 (436)
T ss_dssp             HHHHHHHHHTTCCEEECTTCCHHHHHHHHHHTTSC----BTTTBCCSEEEESSSHHHHHH
T ss_pred             HHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHh----cccCCCCceEeccccHHHHHH
Confidence            999999999999999999999999999999998 4    343  5899999999998853

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=100.00  E-value=2.3e-43  Score=387.67  Aligned_cols=135  Identities=45%  Similarity=0.774  Sum_probs=128.5

Q ss_pred             cccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCC
Q psy7896         496 LLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFS  575 (718)
Q Consensus       496 ~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~npls  575 (718)
                      ...|.|+|++|+++|+++|+||+++||+||.||++|..+|||+|+||++|+|||+|||+|+++|+++||+|+||||||||
T Consensus        11 ~~~~~v~d~~la~~g~~~i~~a~~~mp~l~~~r~~~~~~~pl~G~ri~~~lH~~~~Ta~l~~tL~~~GA~v~~~~~n~~s   90 (435)
T 3gvp_A           11 SSDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIVGCTHITAQTAVLMETLGALGAQCRWAACNIYS   90 (435)
T ss_dssp             CCCSBCSCGGGHHHHHHHHHHHHHTCHHHHHHHHHHSTTCTTTTCEEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSC
T ss_pred             CCCccccChhhhHHhHHHHHHHHHhCHHHHHHHHHHhccCCCCCCEEEEEEccHHHHHHHHHHHHHCCCEEEEEecCCCc
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCccccc
Q psy7896         576 TQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNL  633 (718)
Q Consensus       576 tqd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~  633 (718)
                      |||||||||++.||+||||||||+|||||||+++|+.   .+.+|+||+||||||+++
T Consensus        91 tqd~~aaal~~~gi~v~a~~g~~~~ey~~~~~~~~~~---~~~~p~~ilDdGgdl~~~  145 (435)
T 3gvp_A           91 TLNEVAAALAESGFPVFAWKGESEDDFWWCIDRCVNV---EGWQPNMILDDGGDLTHW  145 (435)
T ss_dssp             CCHHHHHHHHHHTCCEECCTTCCHHHHHHHHHHHHCB---TTBCCSEEEESSSHHHHH
T ss_pred             ChHHHHHHHHhcCCeEEEecCCCHHHHHHHHHHHHhc---cCCCCcEEEecchHHHHH
Confidence            9999999999999999999999999999999999941   234789999999999985

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=100.00  E-value=1.1e-42  Score=388.27  Aligned_cols=134  Identities=49%  Similarity=0.848  Sum_probs=128.8

Q ss_pred             cccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCch
Q psy7896         498 VHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQ  577 (718)
Q Consensus       498 ~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstq  577 (718)
                      .|.|+|++|+++|+++|+||+++||+||.||++|..+|||+|+||++|||||+|||+|++||+++||+|+||||||||||
T Consensus         5 ~~~v~d~~la~~g~~~i~~a~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~tL~~~Ga~v~~~~~n~~stq   84 (479)
T 1v8b_A            5 KSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTA   84 (479)
T ss_dssp             CCBCSCGGGHHHHHHHHHHHGGGCHHHHHHHHHSTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CceecChhhhhHhHHHHHHHHhHCHHHHHHHHHhhccCCCCCCEEEEEeccHHHHHHHHHHHHHCCCEEEEecCCCCCch
Confidence            68899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-cCceEEEeeCCChHHHHHHHHHHhhcceecCC----CCeEEEecCCccccccc
Q psy7896         578 DHAAAAIAA-RGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN----GNHIILLAEGRLVNLGC  635 (718)
Q Consensus       578 d~vaaal~~-~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~----~~~~i~ddggdl~~~~~  635 (718)
                      |||||||++ .||+||||||||.||||||++++|+    |++    +|+||+||||||+++.-
T Consensus        85 d~~aaal~~~~gi~v~a~~g~~~~ey~~~~~~~l~----~~~~~~~~~~~i~ddggd~~~~~~  143 (479)
T 1v8b_A           85 DYAAAAVSTLENVTVFAWKNETLEEYWWCVESALT----WGDGDDNGPDMIVDDGGDATLLVH  143 (479)
T ss_dssp             HHHHHHHTTSTTEEEECCTTCCHHHHHHHHHHHHC----CSSSSSCSCSEEEESSSHHHHHHH
T ss_pred             HHHHHHHhhcCCceEEEeCCCCHHHHHHHHHHHhc----CcccccCCCCEEEeccchHHHHHH
Confidence            999999998 7999999999999999999999994    444    69999999999998763

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=100.00  E-value=1.1e-42  Score=389.98  Aligned_cols=135  Identities=59%  Similarity=0.909  Sum_probs=129.7

Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST  576 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst  576 (718)
                      ..|.|+|++|+++|+++|+||+++||+||.||++|..+|||+|+||++|||||+|||+|+++|+++||+|+|||||||||
T Consensus        18 ~~~~v~d~~la~~g~~~i~~a~~~mp~l~~~~~~~~~~~pl~g~~i~~~~h~~~~ta~l~~~l~~~ga~v~~~~~n~~st   97 (494)
T 3ce6_A           18 IDFKIADLSLADFGRKELRIAEHEMPGLMSLRREYAEVQPLKGARISGSLHMTVQTAVLIETLTALGAEVRWASCNIFST   97 (494)
T ss_dssp             EEEBCSCGGGHHHHHHHHHHHHHHCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCC
T ss_pred             CceeecChhhhHHhHHHHHHHHHHCHHHHHHHHHhhccCCCCCCEEEEEeecHHHHHHHHHHHHHCCCeEEEeecCCCCc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhc---------CceEEEeeCCChHHHHHHHHHHhhcceecCC--CC-eEEEecCCccccccc
Q psy7896         577 QDHAAAAIAAR---------GVAVYAWKGETDEEYVWCIEQTLVDRYTLPN--GN-HIILLAEGRLVNLGC  635 (718)
Q Consensus       577 qd~vaaal~~~---------gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~--~~-~~i~ddggdl~~~~~  635 (718)
                      ||||||||++.         ||+||||||||.||||||++++|+    |++  +| +||+||||||+++.-
T Consensus        98 qd~~aaa~~~~~~~~~~~~~g~~v~a~~g~~~~~y~~~~~~~~~----~~~~~~~~~~i~ddggd~~~~~~  164 (494)
T 3ce6_A           98 QDHAAAAVVVGPHGTPDEPKGVPVFAWKGETLEEYWWAAEQMLT----WPDPDKPANMILDDGGDATMLVL  164 (494)
T ss_dssp             CHHHHHHHHHCSSCCSSSCCSCCEECCTTCCHHHHHHHHHHHHC----CSSTTSCCCEEEESSSHHHHHHH
T ss_pred             hHHHHHHHhhhccccccCCCCeEEEEeCCCCHHHHHHHHHHHHh----ccccCCCceEEeecchHHHHHHH
Confidence            99999999988         999999999999999999999994    555  68 999999999998864

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=100.00  E-value=2.2e-38  Score=354.67  Aligned_cols=135  Identities=54%  Similarity=0.785  Sum_probs=129.5

Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST  576 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst  576 (718)
                      ..|.|+|++|+++|+++|+||+++||+||.||++|..+|||+|+||++|+|+|.+|++|+++|+++||+|+|+|||||||
T Consensus        33 ~~~~v~d~~la~~g~~~i~~a~~~mp~l~~~~~~~~~~~pl~G~ri~~~lh~~~~ta~li~tL~~~GA~V~~~~~n~~st  112 (494)
T 3d64_A           33 QDYVVADIALAGWGRKELNIAETEMPGLVQIRDEYKAQQPLKGARIAGSLHMTIQTGVLIETLKALGADVRWASCNIFST  112 (494)
T ss_dssp             CCCBCSCGGGHHHHHHHHHHHGGGCHHHHHHHHHTTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSSSCC
T ss_pred             CCceecchhhhhHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEeCCcHHHHHHHHHHHhCCCEEEEEecCCccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCC--CCeEEEecCCccccccc
Q psy7896         577 QDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPN--GNHIILLAEGRLVNLGC  635 (718)
Q Consensus       577 qd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~--~~~~i~ddggdl~~~~~  635 (718)
                      |||+||||++.||+||||||||.||||||++++|+    |++  +|++|+||||||+++-.
T Consensus       113 qd~~aaal~~~gi~v~a~kget~~ey~~~~~~~l~----~~~~~~p~~i~Ddggd~~~~~~  169 (494)
T 3d64_A          113 QDHAAAAIVEAGTPVFAFKGESLDEYWEFSHRIFE----WPNGEFANMILDDGGDATLLLI  169 (494)
T ss_dssp             CHHHHHHHHHTTCCEECCTTCCHHHHHHHHHHTTC----CSTTCCCCEEEESSSHHHHHHH
T ss_pred             chHHHHHHHhCCceEEEecCCCHHHHHHHHHHHhc----cccCCCCceeecCCcceeehhh
Confidence            99999999999999999999999999999999994    444  58999999999998765

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.89  E-value=5.6e-23  Score=223.87  Aligned_cols=259  Identities=17%  Similarity=0.087  Sum_probs=171.0

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccC
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG  348 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~G  348 (718)
                      -|-|...|.|...++.. +++++|+.|+.+.......+..++.++.+.          +           .+..+.++.|
T Consensus        62 Lk~I~~~~~G~D~iD~~-~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~----------l-----------~r~~g~~l~g  119 (381)
T 3oet_A           62 INFVGTATAGTDHVDEA-WLKQAGIGFSAAPGCNAIAVVEYVFSALLM----------L-----------AERDGFSLRD  119 (381)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHTTCEEECCTTTTHHHHHHHHHHHHHH----------H-----------HHHTTCCGGG
T ss_pred             CEEEEEccccccccCHH-HHHhCCEEEEECCCcCcchhHHHHHHHHHH----------H-----------HHhcCCccCC
Confidence            34455555555555544 678999999965443333322222222211          1           1123678999


Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----C----CCCCcCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----G----CKDIIRGE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----g----t~~lI~~e  420 (718)
                      |||||||+|+||+.+|+++++|||+|+++|+.+  .  ....+..+.++++++++||+|++++    .    |+++|+++
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~--~--~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~  195 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR--A--ARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADET  195 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECHHH--H--HTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHH
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCh--H--HhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHH
Confidence            999999999999999999999999999997532  1  1124566789999999999999873    3    88999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhc----c-----ccceeeecCC---------cccCccccchhhHHHHhhhcc--
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK----N-----AVEKVNVKPQ---------VSPTSRTKHLTTEALLATCNS--  480 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~----~-----~l~~~~v~P~---------V~v~s~e~~~~~eal~n~~~~--  480 (718)
                      .|+.||+|++|||+|||. .+|.++|.+    .     ++|+++.+|.         +..|||.+.++.|+..+....  
T Consensus       196 ~l~~mk~gailIN~aRG~-vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~e~~~~~~~~~~  274 (381)
T 3oet_A          196 LIRRLKPGAILINACRGP-VVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGKARGTTQVF  274 (381)
T ss_dssp             HHHHSCTTEEEEECSCGG-GBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCHHHHHHHHHHHH
T ss_pred             HHhcCCCCcEEEECCCCc-ccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCCEEECCccCcCcHHHHHHHHHHHH
Confidence            999999999999999996 467655543    2     3688877764         336788888777765443211  


Q ss_pred             -----ccc----cccccc-ccCC-c----------------cccccccc-c-hhhcccchhhhHHHHhcChHHHHHHHHh
Q psy7896         481 -----LFK----YSLVNT-IHEA-P----------------TLLVHLST-D-IKLAEWGRKTIIMAENEMPGLMALRRKY  531 (718)
Q Consensus       481 -----~~~----~nlv~~-~h~~-a----------------~~~~Y~i~-D-~~La~~G~~kI~wa~~~MP~L~~Lr~~f  531 (718)
                           ++.    .++-.+ |... +                ....|+++ | ..|-.    .+    ..-..|+.|||+|
T Consensus       275 ~~l~~~l~~~~~~~~~~~lp~~~~~~~~~~~~~~~~~l~~~~~~~yd~~~d~~~~r~----~~----~~~~~Fd~lRk~y  346 (381)
T 3oet_A          275 EAYSAFIGREQRVALETLLPAPEFGRITLHGPLDQPTLKRLAHLVYDVRRDDAPLRK----VA----GIPGEFDKLRKNY  346 (381)
T ss_dssp             HHHHHHTTCCCCCCHHHHSCCCSCCEEEECSCCCHHHHHHHHHHHCCTHHHHHHHHH----HT----TSTTHHHHHHHTC
T ss_pred             HHHHHHHcCCccccccccCCCcCccceecCCCCCHHHHHHHHHHhCChHHHHHHHHH----hc----cCcchHHHHhcCC
Confidence                 111    111110 1000 0                01344443 2 22211    00    1334699999999


Q ss_pred             cccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEe
Q psy7896         532 GAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQW  568 (718)
Q Consensus       532 ~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~  568 (718)
                      ..+++|+..+|...      .......|.++|+++..
T Consensus       347 ~~rre~~~~~~~~~------~~~~~~~l~~lgf~~~~  377 (381)
T 3oet_A          347 LERREWSSLYVMCD------DETAAALLCKLGFNAVH  377 (381)
T ss_dssp             CCCCCGGGSEEEES------SHHHHHHHHHHTCEEEE
T ss_pred             CccccccceEEecC------cHHHHHHHHHcCCeeec
Confidence            99999999988752      23567899999999873

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.89  E-value=6.7e-23  Score=219.97  Aligned_cols=223  Identities=16%  Similarity=0.091  Sum_probs=145.3

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++.++  .+.|++....-.   ++...|. ++..+.+.++
T Consensus        65 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~---~~~~~~~-~~~~~~~~~l  139 (334)
T 3kb6_A           65 LKLIHTRSVGFDHIDLD-YCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDR---VKKLNFS-QDSEILAREL  139 (334)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCCC-CCGGGCBCCG
T ss_pred             CcEEEECCcccchhcHH-HHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhcccccccc---ccccccc-ccccccccee
Confidence            45566666666666554 679999999976554444444433333  333443222211   1111111 2234568999


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l  422 (718)
                      .||||||||+|+||+.+|+++++|||+|++||+.+...  ....++...+++|++++||||+++    ..|+|+|+++.|
T Consensus       140 ~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~--~~~~~~~~~~l~ell~~sDivslh~Plt~~T~~li~~~~l  217 (334)
T 3kb6_A          140 NRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRED--LKEKGCVYTSLDELLKESDVISLHVPYTKETHHMINEERI  217 (334)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH--HHHTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHH
T ss_pred             cCcEEEEECcchHHHHHHHhhcccCceeeecCCccchh--hhhcCceecCHHHHHhhCCEEEEcCCCChhhccCcCHHHH
Confidence            99999999999999999999999999999998765432  234577889999999999999986    468999999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCC
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEA  493 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~  493 (718)
                      ++||+|++|||+|||. -+|.++|.+.         ++|+++.+|...-.........+........+-.+|++.|||.+
T Consensus       218 ~~mk~~a~lIN~aRG~-iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia  296 (334)
T 3kb6_A          218 SLMKDGVYLINTARGK-VVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVIITPHIA  296 (334)
T ss_dssp             HHSCTTEEEEECSCGG-GBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEECCSCT
T ss_pred             hhcCCCeEEEecCccc-cccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEECCchh
Confidence            9999999999999996 5777666553         23444444322100000000001111111223347999999988


Q ss_pred             cccccc
Q psy7896         494 PTLLVH  499 (718)
Q Consensus       494 a~~~~Y  499 (718)
                      +.+...
T Consensus       297 ~~T~ea  302 (334)
T 3kb6_A          297 YYTDKS  302 (334)
T ss_dssp             TCBHHH
T ss_pred             hChHHH
Confidence            765443

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.88  E-value=7.6e-23  Score=225.10  Aligned_cols=246  Identities=15%  Similarity=0.143  Sum_probs=163.6

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....++. +++++|+.|+.+.......+..++.+  +.+.|++.......   +.+.|.  +..+.+.++
T Consensus        81 Lk~I~~~~~G~d~IDl~-~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~---~~g~W~--~~~~~~~el  154 (416)
T 3k5p_A           81 LIAVGCFSVGTNQVELK-AARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSA---HAGGWE--KTAIGSREV  154 (416)
T ss_dssp             CCEEEECSSCCTTBCHH-HHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHH---HTTCCC--CCCTTCCCS
T ss_pred             cEEEEECccccCccCHH-HHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhh---hccccc--ccCCCCccC
Confidence            45555556666555554 67999999997654444444433333  34445543332111   111221  122447899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~l  422 (718)
                      +||||||||+|+||+.+|+++++|||+|++||+++.....   ....+.++++++++||+|+++.    .|+++|+++.|
T Consensus       155 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~~~~~~---~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l  231 (416)
T 3k5p_A          155 RGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKLQYG---NVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKL  231 (416)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCCCCBT---TBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcchhccc---CcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHH
Confidence            9999999999999999999999999999999887643211   1124568999999999999873    47899999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhc----c-----ccceeeecC---------------CcccCccccchhhHHHHhhh
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDK----N-----AVEKVNVKP---------------QVSPTSRTKHLTTEALLATC  478 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~----~-----~l~~~~v~P---------------~V~v~s~e~~~~~eal~n~~  478 (718)
                      +.||+|++|||+|||. .+|.++|.+    .     ++|+++.+|               +|..+||.+.++.|+..+. 
T Consensus       232 ~~mk~gailIN~aRG~-vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~-  309 (416)
T 3k5p_A          232 RKMKKGAFLINNARGS-DVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERI-  309 (416)
T ss_dssp             HHSCTTEEEEECSCTT-SBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHH-
T ss_pred             hhCCCCcEEEECCCCh-hhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHH-
Confidence            9999999999999996 467655544    2     356665544               3556677777777666553 


Q ss_pred             cccccccccccccCCcccccccccchhhccc-chhhhHHHHhcChHHH
Q psy7896         479 NSLFKYSLVNTIHEAPTLLVHLSTDIKLAEW-GRKTIIMAENEMPGLM  525 (718)
Q Consensus       479 ~~~~~~nlv~~~h~~a~~~~Y~i~D~~La~~-G~~kI~wa~~~MP~L~  525 (718)
                      ......|+..|..++.+....+..+++|+.. |..|+-..+++.|+..
T Consensus       310 ~~~~~~nl~~~l~~g~~~~~Vn~p~~~~~~~~~~~r~~~~h~n~p~~~  357 (416)
T 3k5p_A          310 GTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGIL  357 (416)
T ss_dssp             HHHHHHHHHHHHHHCCCTTBSSSCCCCCCCCSSSEEEEEEECCCTTHH
T ss_pred             HHHHHHHHHHHHhhCCCCceeeCCCcCCCCCCCceEEEEEecCCccHH
Confidence            3333455566655555555555566666554 6667878888888874

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.87  E-value=7.2e-22  Score=215.29  Aligned_cols=261  Identities=17%  Similarity=0.162  Sum_probs=172.4

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA  347 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~  347 (718)
                      ..|-|...|.|....+.. +++++|+.|+.+.......+..++.+..+          .+.           +..+.++.
T Consensus        58 ~Lk~I~~~~~G~D~iD~~-~~~~~gI~v~n~pg~~~~~vAE~~l~~lL----------~l~-----------r~~~~~l~  115 (380)
T 2o4c_A           58 PVRFVGTCTIGTDHLDLD-YFAEAGIAWSSAPGCNARGVVDYVLGCLL----------AMA-----------EVRGADLA  115 (380)
T ss_dssp             CCCEEEECSSCSTTBCHH-HHHHHTCEEECCTTTTHHHHHHHHHHHHH----------HHH-----------HHHTCCGG
T ss_pred             CceEEEEcCcccchhhHH-HHHhCCCEEEeCCCcChHHHHHHHHHHHH----------HHH-----------hhhhcccC
Confidence            456666666666666654 67899999996544333332222222211          111           11257899


Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----C----CCCCcCH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----G----CKDIIRG  419 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----g----t~~lI~~  419 (718)
                      |+||||||+|+||+.+|++|++||++|+++|+.+...    ..|....++++++++||+|+++.    .    |+++|++
T Consensus       116 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~  191 (380)
T 2o4c_A          116 ERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPRQAR----EPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDE  191 (380)
T ss_dssp             GCEEEEECCSHHHHHHHHHHHHTTCEEEEECHHHHHH----STTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCH
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCChhhh----ccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCH
Confidence            9999999999999999999999999999997644211    24556679999999999999873    3    8899999


Q ss_pred             HHHhcCCCCeEEEEcCCCCccccHHHHhc----c-----ccceeeecC---------CcccCccccchhhHHHHhhhc--
Q psy7896         420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDK----N-----AVEKVNVKP---------QVSPTSRTKHLTTEALLATCN--  479 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~----~-----~l~~~~v~P---------~V~v~s~e~~~~~eal~n~~~--  479 (718)
                      +.|+.||+|++|||+|||. .+|.++|.+    .     ++|+++.+|         ++..|||.+.++.|+..+...  
T Consensus       192 ~~l~~mk~gailIN~sRG~-vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TPHiag~t~e~~~~~~~~~  270 (380)
T 2o4c_A          192 PRLAALRPGTWLVNASRGA-VVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSLEGKLRGTAQI  270 (380)
T ss_dssp             HHHHTSCTTEEEEECSCGG-GBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTTCSEECSSCTTCCHHHHHHHHHHH
T ss_pred             HHHhhCCCCcEEEECCCCc-ccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccCCEEEccccCcCCHHHHHHHHHHH
Confidence            9999999999999999985 466554443    2     367777776         566889998887765443211  


Q ss_pred             -----cccc----ccccccccCCc----------c---------ccccccc-c-hhhcccchhhhHHHHhcCh---HHHH
Q psy7896         480 -----SLFK----YSLVNTIHEAP----------T---------LLVHLST-D-IKLAEWGRKTIIMAENEMP---GLMA  526 (718)
Q Consensus       480 -----~~~~----~nlv~~~h~~a----------~---------~~~Y~i~-D-~~La~~G~~kI~wa~~~MP---~L~~  526 (718)
                           .++.    .++..+++..+          .         ...|+++ | ..|-.    .+  ......   .|+.
T Consensus       271 ~~nl~~~l~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~yd~~~dd~~~r~----~~--~~~~~~~~~~Fd~  344 (380)
T 2o4c_A          271 YQAYCAWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRAVYDPRSDDAAFRR----SL--TGDSATRRAAFDA  344 (380)
T ss_dssp             HHHHHHHHTCCCCCCGGGTCCCCSEEEEEECTTCCHHHHHHHHHHHHCCTHHHHHHHHH----TT--SSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCccchhhcCCCCccceeccccccchHHHHHHHHHHhCCcHhHHHHHHh----hc--cCCccchhhhHHH
Confidence                 1111    12222211111          0         1245554 2 23311    11  001111   5999


Q ss_pred             HHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeE
Q psy7896         527 LRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEV  566 (718)
Q Consensus       527 Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v  566 (718)
                      |||+|..+++|...+|..|     ........|.++|+++
T Consensus       345 lR~~y~~rre~~~~~~~~~-----~~~~~~~~l~~lgf~~  379 (380)
T 2o4c_A          345 LRKHYPPRREITGLRVATG-----GQAELQRVVRALGAQL  379 (380)
T ss_dssp             HHHTCCCCCCGGGCEEECT-----TCHHHHHHHHHHTCEE
T ss_pred             HhcCCCccccccceEEecC-----CcHHHHHHHHHcCCcc
Confidence            9999999999999998652     3344578899999985

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.87  E-value=8.5e-22  Score=211.05  Aligned_cols=227  Identities=12%  Similarity=0.016  Sum_probs=151.0

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+..++.+  +.+.|++...+-.   ++.+.|..|+....+.+
T Consensus        67 ~Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~w~~~~~~~~~~~  142 (330)
T 4e5n_A           67 ELRVIGCALKGFDNFDVD-ACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAF---VRSGKFRGWQPRFYGTG  142 (330)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCCCSCCSCCCCCC
T ss_pred             CCcEEEECCCcccccCHH-HHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHH---HHhCCccccCccccCCc
Confidence            345566666666666654 67899999997755444444444444  3344554332211   12233443444556899


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~  421 (718)
                      +.||||||||+|+||+.+|+++++|||+|+++|+++.....+...|+...++++++++||+|+++.    .|+++|+++.
T Consensus       143 l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  222 (330)
T 4e5n_A          143 LDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAEL  222 (330)
T ss_dssp             STTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHH
Confidence            999999999999999999999999999999999887443334445777789999999999999873    5789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhH-HHHhhhcccccccccccccCCcccccc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTE-ALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~e-al~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      |+.||+|++|||+|||. .+|.++|.+..-+.......+||++.|+.+..+ ++......+-.+|++.|||.++.+...
T Consensus       223 l~~mk~gailIN~arg~-~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~  300 (330)
T 4e5n_A          223 LALVRPGALLVNPCRGS-VVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV  300 (330)
T ss_dssp             HTTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHH
T ss_pred             HhhCCCCcEEEECCCCc-hhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHH
Confidence            99999999999999996 477666655311111112334555444211100 000111122237999999988765443

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.87  E-value=1.6e-21  Score=210.14  Aligned_cols=218  Identities=16%  Similarity=0.081  Sum_probs=146.1

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh-hhhhcc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ-AKYLDI  344 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~-~~~~g~  344 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+...+-+  +.+.|++....-.   ++.+.|..+. ..+.|.
T Consensus        94 ~Lk~I~~~~~G~D~id~~-~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~---~r~g~W~~~~~~~~~g~  169 (345)
T 4g2n_A           94 GLKTIATLSVGYDHIDMA-AARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRM---VRSGSWPGWGPTQLLGM  169 (345)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHH---HHTTCCCCCCTTTTCBC
T ss_pred             CceEEEEcCCcccccCHH-HHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHH---HHcCCCcccCccccccc
Confidence            345566666666666654 67999999997765444444444434  3445655333211   1222333222 234589


Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcC----CCCCCcCH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTT----GCKDIIRG  419 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~at----gt~~lI~~  419 (718)
                      ++.||||||||+|+||+.+|+++++|||+|+++|+++.....+  .|.... ++++++++||+|+++.    .|+++|++
T Consensus       170 ~l~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~  247 (345)
T 4g2n_A          170 GLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDH  247 (345)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCH
T ss_pred             ccCCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCH
Confidence            9999999999999999999999999999999999877543322  266665 8999999999999874    37899999


Q ss_pred             HHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896         420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      +.|+.||+|++|||+|||. -+|.++|.+..-+.......+||++.|.+ ..      .+.+-.+|++.|||.++.+...
T Consensus       248 ~~l~~mk~gailIN~aRG~-~vde~aL~~aL~~g~i~gA~LDVf~~EP~-~~------~pL~~~~nvilTPHia~~t~e~  319 (345)
T 4g2n_A          248 DRIAKIPEGAVVINISRGD-LINDDALIEALRSKHLFAAGLDVFANEPA-ID------PRYRSLDNIFLTPHIGSATHET  319 (345)
T ss_dssp             HHHHHSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCTTTTS-CC------TTGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHhhCCCCcEEEECCCCc-hhCHHHHHHHHHhCCceEEEecCCCCCCC-CC------chHHhCCCEEEcCccCcCCHHH
Confidence            9999999999999999996 47766665421111111223344433321 11      1223338999999988765444

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.86  E-value=9.5e-22  Score=216.02  Aligned_cols=169  Identities=12%  Similarity=0.086  Sum_probs=117.5

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|...+++. +++++|+.|+.+.......+..++-+  +.+.|++....-..   +.+.|.  +..+.+.++
T Consensus        70 Lk~I~~~~~G~d~iD~~-~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~---~~g~W~--~~~~~~~el  143 (404)
T 1sc6_A           70 LVAIGAFAIGTNQVDLD-AAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKA---HRGVGN--KLAAGSFEA  143 (404)
T ss_dssp             CCEEEECSSCCTTBCHH-HHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHH---HHTCCC-------CCCS
T ss_pred             CcEEEECCcccCccCHH-HHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHH---HcCCcc--ccCCCcccc
Confidence            44555555555555554 67999999997655444444443334  34456553332111   111221  223458899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEc----CCCCCCcCHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTT----TGCKDIIRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~a----tgt~~lI~~e~  421 (718)
                      .||||||||+|+||+.+|+++++|||+|++||+.+....    .+... .+++|++++||+|+++    ..|+++|+++.
T Consensus       144 ~gktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~----~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  219 (404)
T 1sc6_A          144 RGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKE  219 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHH
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCchhcc----CCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHH
Confidence            999999999999999999999999999999987664321    23443 4899999999999997    35789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      |+.||+|++|||+||+. .+|.++|.+
T Consensus       220 l~~mk~ga~lIN~aRg~-~vd~~aL~~  245 (404)
T 1sc6_A          220 ISLMKPGSLLINASRGT-VVDIPALAD  245 (404)
T ss_dssp             HHHSCTTEEEEECSCSS-SBCHHHHHH
T ss_pred             HhhcCCCeEEEECCCCh-HHhHHHHHH
Confidence            99999999999999996 466554443

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.86  E-value=4.5e-21  Score=207.10  Aligned_cols=221  Identities=13%  Similarity=0.039  Sum_probs=145.1

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|...++.. +++++|+.|+.+.......+...+-+  +.+.|++...+-.   ++.+.|........+.+
T Consensus        86 ~Lk~i~~~g~G~d~id~~-~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~W~~~~~~~~~~~  161 (351)
T 3jtm_A           86 NLKLLLTAGIGSDHIDLQ-AAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQ---VVKGEWNVAGIAYRAYD  161 (351)
T ss_dssp             SCCEEEESSSCCTTBCHH-HHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHH---HHTTCCCHHHHHTTCCC
T ss_pred             CCeEEEEeCeeecccCHH-HHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHH---HHcCCCccccccCCccc
Confidence            345566666666555554 66899999997655444333333333  3445655333311   12223322111234789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTT----TGCKDIIRGE  420 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~a----tgt~~lI~~e  420 (718)
                      |.||||||||+|+||+.+|+++++|||+|+++|+++.....+...|+... ++++++++||+|+++    ..|+++|+++
T Consensus       162 l~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~  241 (351)
T 3jtm_A          162 LEGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKE  241 (351)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHH
T ss_pred             ccCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHH
Confidence            99999999999999999999999999999999987754433444576655 899999999999986    3588999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      .|+.||+|++|||+|||. .+|.++|.+..-+.......+||++.|..-      ...+.+-.+|++.|||.++.+...
T Consensus       242 ~l~~mk~gailIN~aRG~-~vde~aL~~aL~~g~i~ga~lDV~~~EP~~------~~~pL~~~~nvilTPHia~~t~ea  313 (351)
T 3jtm_A          242 LIGKLKKGVLIVNNARGA-IMERQAVVDAVESGHIGGYSGDVWDPQPAP------KDHPWRYMPNQAMTPHTSGTTIDA  313 (351)
T ss_dssp             HHHHSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCSSSSCC------TTCGGGTSTTBCCCCSCGGGSHHH
T ss_pred             HHhcCCCCCEEEECcCch-hhCHHHHHHHHHhCCccEEEeCCCCCCCCC------CCChhhcCCCEEECCcCCCCCHHH
Confidence            999999999999999996 477666654211111111233333333211      111223347999999987665444

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.85  E-value=6.3e-21  Score=206.91  Aligned_cols=209  Identities=15%  Similarity=0.117  Sum_probs=136.0

Q ss_pred             ecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchhh-hhhhcccccCcEEE
Q psy7896         276 GYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTEDQ-AKYLDIMLAGKVAV  352 (718)
Q Consensus       276 GyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~~-~~~~g~eL~GktVG  352 (718)
                      |+.++++.   +++++|+.|+.+.......+...+-++  .+.|++....-   .++.+.|.|.. ..+.+.++.|||||
T Consensus       107 G~d~iD~~---~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~---~~r~g~~~w~~~~~~~~~~l~gktvG  180 (365)
T 4hy3_A          107 LLNNMPYE---VLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADI---AFQEGTELWGGEGNASARLIAGSEIG  180 (365)
T ss_dssp             CCSCSCTT---HHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHH---HHHHTCCCCSSSSTTSCCCSSSSEEE
T ss_pred             ccCcccHH---HHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHH---HHHcCCccccccccccccccCCCEEE
Confidence            34455554   459999999976443333333333333  33344322110   01111221111 13458899999999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHHhcCCCC
Q psy7896         353 VAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHFLQMRDD  428 (718)
Q Consensus       353 IIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l~~MK~g  428 (718)
                      |||+|+||+.+|+++++|||+|++||+++. ...+...|+...++++++++||+|+++    ..|+++|+++.|+.||+|
T Consensus       181 IIGlG~IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~g  259 (365)
T 4hy3_A          181 IVGFGDLGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRG  259 (365)
T ss_dssp             EECCSHHHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTT
T ss_pred             EecCCcccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCC
Confidence            999999999999999999999999988753 233345688888999999999999986    357899999999999999


Q ss_pred             eEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896         429 AIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       429 AiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      ++|||+|||. .+|.++|.+.. +...+...+||++.|..-      ...+.+-.+|++.|||.++.+...
T Consensus       260 ailIN~aRG~-~vde~aL~~aL-~~g~i~aaLDV~~~EPl~------~~~pL~~~~nvilTPHia~~t~e~  322 (365)
T 4hy3_A          260 AAFILLSRAD-VVDFDALMAAV-SSGHIVAASDVYPEEPLP------LDHPVRSLKGFIRSAHRAGALDSA  322 (365)
T ss_dssp             CEEEECSCGG-GSCHHHHHHHH-HTTSSEEEESCCSSSSCC------TTCGGGTCTTEEECCSCSSCCHHH
T ss_pred             cEEEECcCCc-hhCHHHHHHHH-HcCCceEEeeCCCCCCCC------CCChhhcCCCEEECCccccCHHHH
Confidence            9999999996 47777666531 111122345555554211      111223348999999988765443

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.85  E-value=2.9e-21  Score=207.99  Aligned_cols=249  Identities=12%  Similarity=0.056  Sum_probs=153.1

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhccc-ccccchhhhhhhcccc
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVK-LTKLTEDQAKYLDIML  346 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~-~~~~~~~~~~~~g~eL  346 (718)
                      |-|...|.|....+.. +++++|+.|+.+.......+...+-+  +.+.|++....-.   ++ .+.|. |+..+.+.++
T Consensus        72 k~I~~~~~G~d~id~~-~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~~g~~~-w~~~~~~~~l  146 (343)
T 2yq5_A           72 KCIGLRIVGFNTINFD-WTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYR---MDHDHDFT-WPSNLISNEI  146 (343)
T ss_dssp             CEEEESSSCCTTBCSS-TTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHH---HHHHCCCC-CCGGGCBCCG
T ss_pred             eEEEECceeecccchh-HHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHH---HHHcCCcc-cccCCCcccc
Confidence            5555566665555543 56899999997654433333333333  3445654332211   11 11222 3245678999


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~l  422 (718)
                      .||||||||+|+||+.+|+++++|||+|++||+++...   ...+....++++++++||+|+++.    .|+++|+++.|
T Consensus       147 ~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l  223 (343)
T 2yq5_A          147 YNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQL  223 (343)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHH
T ss_pred             CCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhhh---hhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHH
Confidence            99999999999999999999999999999999887542   234566779999999999999873    57999999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCc-cccchhhHHHHhh-hccccccccccccc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTS-RTKHLTTEALLAT-CNSLFKYSLVNTIH  491 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s-~e~~~~~eal~n~-~~~~~~~nlv~~~h  491 (718)
                      +.||+|++|||+|||. .+|.++|.+.         ++|+++.+|...+.. +..    +.+.+. .+.+-.+|++.|||
T Consensus       224 ~~mk~gailIN~aRg~-~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~----~~l~~~~~pL~~~~nvilTPH  298 (343)
T 2yq5_A          224 KEMKKSAYLINCARGE-LVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTD----SEIPEDYKTLAKMPNVVITPH  298 (343)
T ss_dssp             HHSCTTCEEEECSCGG-GBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCT----TTSCHHHHHHTTCTTEEECSS
T ss_pred             hhCCCCcEEEECCCCh-hhhHHHHHHHHHcCCCcEEEecccccCCCccccccccc----cccccchhHHhcCCCEEECCc
Confidence            9999999999999996 4776666542         245554444210000 000    001110 11233489999999


Q ss_pred             CCcccccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeec
Q psy7896         492 EAPTLLVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLH  547 (718)
Q Consensus       492 ~~a~~~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh  547 (718)
                      .++.+.....           ++     ..-.+.+|++-+..+.|.-=+....+.|
T Consensus       299 ia~~t~ea~~-----------~~-----~~~~~~ni~~~l~g~~~~~~v~~~~~~~  338 (343)
T 2yq5_A          299 SAFYTETSIR-----------NM-----VQICLTDQLTIAKGGRPRSIVNLTASGH  338 (343)
T ss_dssp             CTTCBHHHHH-----------HH-----HHHHHHHHHHHHTTCCCTTBC-------
T ss_pred             cccchHHHHH-----------HH-----HHHHHHHHHHHHcCCCCCceECCccCCc
Confidence            8876544411           00     0113456666666666655555555544

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.83  E-value=7.8e-21  Score=203.23  Aligned_cols=217  Identities=16%  Similarity=0.063  Sum_probs=139.1

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++...+  +...+.+.   |.....+.++
T Consensus        62 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~--~~~~~~~~---W~~~~~~~~l  135 (324)
T 3evt_A           62 LKFVQVISAGVDYLPLK-ALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAW--LNQRGARQ---WALPMTTSTL  135 (324)
T ss_dssp             CCEEECSSSCCTTSCHH-HHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHH--HHHTTTCC---SSCSSCCCCS
T ss_pred             ceEEEECCccccccCHH-HHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHH--HHHHhcCC---cccCCCCccc
Confidence            34444455555555554 67899999997654333333333333  33345443331  01111122   2222258899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~l  422 (718)
                      .||||||||+|+||+.+|++|++|||+|+++|+++.... .....+...++++++++||+|+++.    .|+++|+++.|
T Consensus       136 ~gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l  214 (324)
T 3evt_A          136 TGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPAD-HFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELF  214 (324)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCCCCT-TCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHH
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCcchhH-hHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHH
Confidence            999999999999999999999999999999998775421 1122344568999999999999873    46899999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      +.||+|++|||+|||. .+|.++|.+..-+.......+||++.|..      ....+.+-.+|++.|||.++.+..+
T Consensus       215 ~~mk~gailIN~aRG~-~vd~~aL~~aL~~g~i~gA~lDV~~~EPl------~~~~pL~~~~nvilTPHia~~t~~~  284 (324)
T 3evt_A          215 QQTKQQPMLINIGRGP-AVDTTALMTALDHHQLSMAALDVTEPEPL------PTDHPLWQRDDVLITPHISGQIAHF  284 (324)
T ss_dssp             HTCCSCCEEEECSCGG-GBCHHHHHHHHHTTSCSEEEESSCSSSSC------CTTCGGGGCSSEEECCSCTTCCCCH
T ss_pred             hcCCCCCEEEEcCCCh-hhhHHHHHHHHHhCCceEEEeCCCCCCCC------CCCChhhcCCCEEEcCccccChHHH
Confidence            9999999999999996 47766655421111111123344433321      1112233348999999988776544

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.83  E-value=1.8e-20  Score=202.53  Aligned_cols=210  Identities=15%  Similarity=0.111  Sum_probs=140.8

Q ss_pred             CCcEEEEEecCC----CChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccch-----
Q psy7896         268 AGKVAVVAGYGD----VGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTE-----  336 (718)
Q Consensus       268 ~Gk~vvViGyG~----vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~-----  336 (718)
                      .-|-|...|.|.    ..++.. +++++|+.|+.+... ...+...+-+  +.+.|++....-..   +.+.|..     
T Consensus        71 ~Lk~I~~~g~G~~~~~d~id~~-~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~---~~g~W~~~~~~~  145 (352)
T 3gg9_A           71 KLKIISQTGRVSRDAGGHIDLE-ACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASL---KHGAWQQSGLKS  145 (352)
T ss_dssp             TCCEEEESSCCCCSSSCSBCHH-HHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHH---HTTCTTCCCCCC
T ss_pred             CCeEEEEeCcccCCccCcccHH-HHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHH---HcCCCCcccccc
Confidence            345566667776    555554 568999999975544 4444433334  34445543332111   1122211     


Q ss_pred             --hh-hhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEc--
Q psy7896         337 --DQ-AKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTT--  410 (718)
Q Consensus       337 --~~-~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~a--  410 (718)
                        |. ....+.+|.||||||||+|+||+.+|+++++|||+|++||+++. ...+...|+... ++++++++||+|+++  
T Consensus       146 ~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~P  224 (352)
T 3gg9_A          146 TTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLR  224 (352)
T ss_dssp             TTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCC
T ss_pred             cccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEecc
Confidence              11 11358899999999999999999999999999999999987652 223445687776 899999999999986  


Q ss_pred             --CCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc----c-----ccceeeecCCcccCccccchhhHHHHhhhc
Q psy7896         411 --TGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK----N-----AVEKVNVKPQVSPTSRTKHLTTEALLATCN  479 (718)
Q Consensus       411 --tgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~----~-----~l~~~~v~P~V~v~s~e~~~~~eal~n~~~  479 (718)
                        ..|+++|+++.|+.||+|++|||+|||. -+|.++|.+    .     ++|+++.+|.-         .      ..+
T Consensus       225 lt~~t~~li~~~~l~~mk~gailIN~aRg~-~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~---------~------~~p  288 (352)
T 3gg9_A          225 LNDETRSIITVADLTRMKPTALFVNTSRAE-LVEENGMVTALNRGRPGMAAIDVFETEPIL---------Q------GHT  288 (352)
T ss_dssp             CSTTTTTCBCHHHHTTSCTTCEEEECSCGG-GBCTTHHHHHHHHTSSSEEEECCCSSSCCC---------S------CCG
T ss_pred             CcHHHHHhhCHHHHhhCCCCcEEEECCCch-hhcHHHHHHHHHhCCccEEEecccCCCCCC---------C------CCh
Confidence              3478999999999999999999999986 356554443    2     23444444421         1      112


Q ss_pred             ccccccccccccCCcccccc
Q psy7896         480 SLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       480 ~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      .+-.+|++.|||.++.+...
T Consensus       289 L~~~~nvilTPHia~~t~e~  308 (352)
T 3gg9_A          289 LLRMENCICTPHIGYVERES  308 (352)
T ss_dssp             GGGCTTEEECCSCTTCBHHH
T ss_pred             hhcCCCEEECCCCCCCCHHH
Confidence            22337999999987665443

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.82  E-value=7.6e-20  Score=196.77  Aligned_cols=215  Identities=13%  Similarity=0.089  Sum_probs=131.8

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+...+-++  .+.|++....-.   ++.+.|........+.+
T Consensus        93 ~Lk~I~~~g~G~d~id~~-~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~---~~~g~W~~~~~~~~~~~  168 (340)
T 4dgs_A           93 SLGIIAINGVGTDKVDLA-RARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRL---VREGRWAAGEQLPLGHS  168 (340)
T ss_dssp             SCCEEEEESSCCTTBCHH-HHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCC------CCCCC
T ss_pred             CCEEEEECCCCccccCHH-HHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHH---HhcCCcccccCcCcccc
Confidence            356777777777777765 779999999976654444444444443  344554332211   11122221101124789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcC----CCCCCcCHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTT----GCKDIIRGE  420 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~at----gt~~lI~~e  420 (718)
                      +.||||||||+|+||+.+|+++++||++|+++|+++...     .++. ..+++|++++||+|+++.    .|+++|+++
T Consensus       169 l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~-----~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~  243 (340)
T 4dgs_A          169 PKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRSTLSG-----VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDAS  243 (340)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCTT-----SCCEECSSHHHHHHTCSEEEECC----------CHH
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCcccc-----cCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHH
Confidence            999999999999999999999999999999999877542     2333 468999999999999873    478999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      .|+.||++++|||+|||. .+|.++|.+..-+.......+||++.|... .+++.+      .+|++.|||.++.+...
T Consensus       244 ~l~~mk~gailIN~aRG~-vvde~aL~~aL~~g~i~gA~LDVf~~EP~~-~~~L~~------~~nvilTPHia~~t~e~  314 (340)
T 4dgs_A          244 LLQALGPEGIVVNVARGN-VVDEDALIEALKSGTIAGAGLDVFVNEPAI-RSEFHT------TPNTVLMPHQGSATVET  314 (340)
T ss_dssp             HHHHTTTTCEEEECSCC---------------CCSSEEEESCCSSSSSC-CSHHHH------SSSEEECSSCSSCCHHH
T ss_pred             HHhcCCCCCEEEECCCCc-ccCHHHHHHHHHcCCceEEEeCCcCCCCCC-ccchhh------CCCEEEcCcCCcCCHHH
Confidence            999999999999999996 467666655311111112234444444211 123333      38999999988765444

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.82  E-value=1.7e-19  Score=193.64  Aligned_cols=208  Identities=17%  Similarity=0.154  Sum_probs=142.9

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+...+-+  +.+.|++....-.   ++.+.|.  +..+.+.+
T Consensus        89 ~Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~W~--~~~~~~~~  162 (335)
T 2g76_A           89 KLQVVGRAGTGVDNVDLE-AATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS---MKDGKWE--RKKFMGTE  162 (335)
T ss_dssp             SCCEEEESSSSCTTBCHH-HHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHH---HHTTCCC--TGGGCBCC
T ss_pred             CCcEEEECCCCcchhChH-HHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHH---HHcCCCC--ccCCCCcC
Confidence            356666666666666654 66899999997654433333333333  3444554332211   1112221  12345789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~  421 (718)
                      +.||||||||+|+||+.+|+++++||++|+++|+++... .+...|....++++++++||+|+++.    .|+++|+++.
T Consensus       163 l~g~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~  241 (335)
T 2g76_A          163 LNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPE-VSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNT  241 (335)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSCHH-HHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHH
T ss_pred             CCcCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchh-hhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHH
Confidence            999999999999999999999999999999999876543 34456777779999999999999872    4789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccC
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHE  492 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~  492 (718)
                      |+.||+|++|||+||+. .+|.++|.+.         ++|++..+|..          ..++.+      .+|++.|||.
T Consensus       242 l~~mk~gailIN~arg~-vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~----------~~~L~~------~~nvilTPH~  304 (335)
T 2g76_A          242 FAQCKKGVRVVNCARGG-IVDEGALLRALQSGQCAGAALDVFTEEPPR----------DRALVD------HENVISCPHL  304 (335)
T ss_dssp             HTTSCTTEEEEECSCTT-SBCHHHHHHHHHHTSEEEEEESCCSSSSCS----------CCHHHH------STTEEECSSC
T ss_pred             HhhCCCCcEEEECCCcc-ccCHHHHHHHHHhCCccEEEEeecCCCCCC----------CchHHh------CCCEEECCcC
Confidence            99999999999999986 4665554432         23444444421          112222      3799999998


Q ss_pred             Ccccccc
Q psy7896         493 APTLLVH  499 (718)
Q Consensus       493 ~a~~~~Y  499 (718)
                      ++.+...
T Consensus       305 ~~~t~e~  311 (335)
T 2g76_A          305 GASTKEA  311 (335)
T ss_dssp             TTCBHHH
T ss_pred             CCCCHHH
Confidence            8765443

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.81  E-value=1.8e-19  Score=197.33  Aligned_cols=212  Identities=13%  Similarity=-0.020  Sum_probs=142.5

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|...+++. +++++|+.|+.+.......+..++-+  +.+.|++...+-.   ++.+.|........+.+
T Consensus       113 ~Lk~I~~~g~G~d~iD~~-aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~---~~~g~W~~~~~~~~~~~  188 (393)
T 2nac_A          113 NLKLALTAGIGSDHVDLQ-SAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEW---ARKGGWNIADCVSHAYD  188 (393)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCCCHHHHHTTCCC
T ss_pred             CCcEEEEcCccccccCHH-HHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHH---HHcCCCCccccccCCcc
Confidence            456666667776666664 66899999998754443333333333  3344544222211   11222321111224789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEc----CCCCCCcCHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTT----TGCKDIIRGE  420 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~a----tgt~~lI~~e  420 (718)
                      |.||||||||+|+||+.+|+++++|||+|+++|+++.....+...|... .++++++++||+|+++    ..|+++|+++
T Consensus       189 l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~  268 (393)
T 2nac_A          189 LEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDE  268 (393)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHH
T ss_pred             CCCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHH
Confidence            9999999999999999999999999999999998765443333456665 5899999999999987    3578999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhccccccccccccc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIH  491 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h  491 (718)
                      .|+.||+|++|||+||+. .+|.++|.+.         ++|++..+|..               .....+-.+|++.|||
T Consensus       269 ~l~~mk~gailIN~aRG~-~vde~aL~~aL~~g~i~gA~lDV~~~EP~~---------------~~~pL~~~~nvilTPH  332 (393)
T 2nac_A          269 TLKLFKRGAYIVNTARGK-LCDRDAVARALESGRLAGYAGDVWFPQPAP---------------KDHPWRTMPYNGMTPH  332 (393)
T ss_dssp             HHTTSCTTEEEEECSCGG-GBCHHHHHHHHHTTSEEEEEESCCSSSSCC---------------TTCGGGTSTTBCCCCS
T ss_pred             HHhhCCCCCEEEECCCch-HhhHHHHHHHHHcCCeeEEEEEecCCCCCC---------------CCChhHcCCCEEECCC
Confidence            999999999999999985 4665555442         23444444421               1111223479999999


Q ss_pred             CCcccccc
Q psy7896         492 EAPTLLVH  499 (718)
Q Consensus       492 ~~a~~~~Y  499 (718)
                      .++.+...
T Consensus       333 ia~~T~e~  340 (393)
T 2nac_A          333 ISGTTLTA  340 (393)
T ss_dssp             CTTCSHHH
T ss_pred             CCcCcHHH
Confidence            88765443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.81  E-value=2.2e-19  Score=194.67  Aligned_cols=221  Identities=14%  Similarity=0.042  Sum_probs=142.9

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhc--CCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLD  343 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~--Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g  343 (718)
                      .-|-|...|.|...++.. +++++  |+.|+.+.......+...+-+  +.+.|++...+..   ++.+.|........+
T Consensus        84 ~Lk~I~~~~~G~d~id~~-~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~W~~~~~~~~~  159 (364)
T 2j6i_A           84 KLKLVVVAGVGSDHIDLD-YINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQ---IINHDWEVAAIAKDA  159 (364)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCCCHHHHHTTC
T ss_pred             CCeEEEECCcccccccHH-HHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHH---HHhCCCCcCcccCCc
Confidence            356677777777777664 66788  999998765444444433333  3344544322211   111223211112347


Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcC----CCCCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTT----GCKDII  417 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~at----gt~~lI  417 (718)
                      .++.|+||||||+|+||+.+|+++++|||+ |+++|+++.....+...|.... ++++++++||+|+++.    .|+++|
T Consensus       160 ~~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li  239 (364)
T 2j6i_A          160 YDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLI  239 (364)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCB
T ss_pred             ccCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHh
Confidence            899999999999999999999999999997 9999987754433344566554 8999999999999873    477999


Q ss_pred             CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhccccc--c---cccccccC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFK--Y---SLVNTIHE  492 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~--~---nlv~~~h~  492 (718)
                      +++.|+.||++++|||+||+. .+|.++|.+..-+.......+||++.|..-...++.      ..  +   |++.|||.
T Consensus       240 ~~~~l~~mk~ga~lIn~arG~-~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~------~~~~~~~~nvilTPHi  312 (364)
T 2j6i_A          240 NKELLSKFKKGAWLVNTARGA-ICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWR------DMRNKYGAGNAMTPHY  312 (364)
T ss_dssp             CHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHH------HCCCTTSCCEEECCSC
T ss_pred             CHHHHhhCCCCCEEEECCCCc-hhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHH------hccCCccCcEEECCcc
Confidence            999999999999999999985 466665554211111111223333333211111121      12  4   89999998


Q ss_pred             Ccccccc
Q psy7896         493 APTLLVH  499 (718)
Q Consensus       493 ~a~~~~Y  499 (718)
                      ++.+...
T Consensus       313 a~~t~e~  319 (364)
T 2j6i_A          313 SGTTLDA  319 (364)
T ss_dssp             GGGSHHH
T ss_pred             CcCCHHH
Confidence            8765444

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.81  E-value=1.4e-19  Score=193.95  Aligned_cols=222  Identities=14%  Similarity=0.121  Sum_probs=144.9

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++....-.   ++.+.|. |...+.+.++
T Consensus        69 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~w~-~~~~~~~~~l  143 (333)
T 1dxy_A           69 IKFLTIRNVGTDNIDMT-AMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQ---LQAGDYE-KAGTFIGKEL  143 (333)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCHH-HHTCCCCCCG
T ss_pred             ceEEEEcCcccCccCHH-HHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHH---HHcCCcc-cccCCCccCC
Confidence            45566666666666654 66899999997654333333333333  3344544322211   1111221 1133467899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~l  422 (718)
                      .|+||||||+|+||+.+|+++++|||+|+++|+++....   ..+....++++++++||+|+++.    .|+++|+++.|
T Consensus       144 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l  220 (333)
T 1dxy_A          144 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKGD---HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAF  220 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSC---CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCcchhh---HhccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHH
Confidence            999999999999999999999999999999998775431   12355679999999999999873    37899999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHH-----Hhh--hcccccccccccccCCcc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEAL-----LAT--CNSLFKYSLVNTIHEAPT  495 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal-----~n~--~~~~~~~nlv~~~h~~a~  495 (718)
                      +.||+|++|||+||+. .+|.++|.+..-+.......+||++.|...+.+..     .+.  ...+-.+|++.|||.++.
T Consensus       221 ~~mk~ga~lIn~srg~-~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~  299 (333)
T 1dxy_A          221 NLMKPGAIVINTARPN-LIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  299 (333)
T ss_dssp             HHSCTTEEEEECSCTT-SBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             hhCCCCcEEEECCCCc-ccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccC
Confidence            9999999999999996 47776666532122222234555555543221110     000  112334899999998876


Q ss_pred             cccc
Q psy7896         496 LLVH  499 (718)
Q Consensus       496 ~~~Y  499 (718)
                      +...
T Consensus       300 t~e~  303 (333)
T 1dxy_A          300 TETA  303 (333)
T ss_dssp             SHHH
T ss_pred             hHHH
Confidence            5443

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.80  E-value=3.8e-20  Score=197.97  Aligned_cols=210  Identities=14%  Similarity=0.040  Sum_probs=132.3

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhh--hhhHHHHHHHHHHhcccccccchhhhhhhccccc
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--ELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA  347 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf--~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~  347 (718)
                      |-|...|.|....+.. +++ .|+.|+.+.......+..++-++  .+.|++....-.   ++.+.   |. ...+.++.
T Consensus        69 k~I~~~~~G~d~id~~-~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~---W~-~~~~~~l~  139 (324)
T 3hg7_A           69 SWFQSTYAGVDVLLDA-RCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQ---QKQRL---WQ-SHPYQGLK  139 (324)
T ss_dssp             CEEEESSSCCGGGSCT-TSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTC---CC-CCCCCCST
T ss_pred             eEEEECCCCCCccChH-HHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHH---HhhCC---Cc-CCCCcccc
Confidence            4444445555444433 334 48888866544333333333333  334544332211   11112   22 23578999


Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHHh
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHFL  423 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l~  423 (718)
                      ||||||||+|+||+.+|+++++|||+|+++|+++.... ....++...++++++++||+|+++    ..|+++|+++.|+
T Consensus       140 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~  218 (324)
T 3hg7_A          140 GRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERA-GFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFE  218 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCT-TCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTT
T ss_pred             cceEEEEEECHHHHHHHHHHHhCCCEEEEEcCChHHhh-hhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHh
Confidence            99999999999999999999999999999998774321 112233456899999999999986    3578999999999


Q ss_pred             cCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccc
Q psy7896         424 QMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTL  496 (718)
Q Consensus       424 ~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~  496 (718)
                      .||+|++|||+|||. .+|.++|.+..-+.......+||++.|..      ....+.+-.+|++.|||.++.+
T Consensus       219 ~mk~gailIN~aRG~-~vde~aL~~aL~~g~i~ga~lDV~~~EPl------~~~~pL~~~~nvilTPHia~~t  284 (324)
T 3hg7_A          219 HCKPGAILFNVGRGN-AINEGDLLTALRTGKLGMAVLDVFEQEPL------PADSPLWGQPNLIITPHNSAYS  284 (324)
T ss_dssp             CSCTTCEEEECSCGG-GBCHHHHHHHHHTTSSSEEEESCCSSSSC------CTTCTTTTCTTEEECCSCSSCC
T ss_pred             cCCCCcEEEECCCch-hhCHHHHHHHHHcCCceEEEeccCCCCCC------CCCChhhcCCCEEEeCCCcccc
Confidence            999999999999996 47766655421111111122333333311      1111223348999999987654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.80  E-value=3.8e-19  Score=188.55  Aligned_cols=209  Identities=17%  Similarity=0.185  Sum_probs=141.8

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++......   ++.+.|.  +..+.+.+
T Consensus        66 ~Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~w~--~~~~~~~~  139 (307)
T 1wwk_A           66 KLKVIARAGVGLDNIDVE-AAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRK---MREGVWA--KKEAMGIE  139 (307)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHH---HTTTCCC--TTTCCBCC
T ss_pred             CCeEEEECCccccccCHH-HHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHH---HHcCCCC--ccCcCCcc
Confidence            355666666666666654 67899999997654333333333333  3334544322211   1111221  11245789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~  421 (718)
                      +.|+||||||+|+||+.+|+++++||++|+++|+++... .+...|+...++++++++||+|+++.    .++++|+++.
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~  218 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEE-RAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEER  218 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHH
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCCChh-hHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHH
Confidence            999999999999999999999999999999999887653 33456777789999999999999873    3789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhc----c-----ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccC
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDK----N-----AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHE  492 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~----~-----~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~  492 (718)
                      |+.||+|+++||+||+. -+|.++|.+    .     ++|++..+|.-         .      ..+.+-.+|++.|||.
T Consensus       219 l~~mk~ga~lin~arg~-~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~---------~------~~~L~~~~nviltPh~  282 (307)
T 1wwk_A          219 LKLMKKTAILINTSRGP-VVDTNALVKALKEGWIAGAGLDVFEEEPLP---------K------DHPLTKFDNVVLTPHI  282 (307)
T ss_dssp             HHHSCTTCEEEECSCGG-GBCHHHHHHHHHHTSSSEEEESCCSSSSCC---------T------TCGGGGCTTEEECSSC
T ss_pred             HhcCCCCeEEEECCCCc-ccCHHHHHHHHHhCCCcEEEEecCCCCCCC---------C------CChHHhCCCEEECCcc
Confidence            99999999999999985 466554443    2     23444444421         0      1112223799999998


Q ss_pred             Ccccccc
Q psy7896         493 APTLLVH  499 (718)
Q Consensus       493 ~a~~~~Y  499 (718)
                      ++.+...
T Consensus       283 ~~~t~~~  289 (307)
T 1wwk_A          283 GASTVEA  289 (307)
T ss_dssp             TTCBHHH
T ss_pred             ccCcHHH
Confidence            8765443

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.79  E-value=1.2e-18  Score=185.09  Aligned_cols=209  Identities=18%  Similarity=0.148  Sum_probs=144.2

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+...+-+  +.+.|++....-.   ++.+.   |. .+.+.+
T Consensus        68 ~Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~---w~-~~~~~~  139 (313)
T 2ekl_A           68 KLKIIARAGIGLDNIDTE-EAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL---AKSGI---FK-KIEGLE  139 (313)
T ss_dssp             TCCEEEECSSCCTTBCHH-HHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHH---HHTTC---CC-CCCCCC
T ss_pred             CCeEEEEcCCCCCccCHH-HHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHH---HHcCC---CC-CCCCCC
Confidence            456677777777666654 67899999997654433333333333  3344554332211   11112   22 345789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~  421 (718)
                      +.|+||||||+|+||+.+|+++++||++|+++|+++... .+...|....++++++++||+|+++.    .++++|+++.
T Consensus       140 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~  218 (313)
T 2ekl_A          140 LAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQ  218 (313)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHH
T ss_pred             CCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHH
Confidence            999999999999999999999999999999999887653 34456777779999999999999973    3789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhcccccccccccccC
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHE  492 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~  492 (718)
                      ++.||+|+++||+||+. .+|.++|.+.         ++|++..+|..       .....++.+      .+|++.|||.
T Consensus       219 l~~mk~ga~lIn~arg~-~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~-------~~~~~~L~~------~~nviltPH~  284 (313)
T 2ekl_A          219 FELMKDNVIIVNTSRAV-AVNGKALLDYIKKGKVYAYATDVFWNEPPK-------EEWELELLK------HERVIVTTHI  284 (313)
T ss_dssp             HHHSCTTEEEEESSCGG-GBCHHHHHHHHHTTCEEEEEESCCSSSSCC-------SHHHHHHHH------STTEEECCSC
T ss_pred             HhcCCCCCEEEECCCCc-ccCHHHHHHHHHcCCCcEEEEecCCCCCCC-------CcccchHhh------CCCEEECCcc
Confidence            99999999999999985 4665555442         23444444422       000112222      3799999998


Q ss_pred             Ccccccc
Q psy7896         493 APTLLVH  499 (718)
Q Consensus       493 ~a~~~~Y  499 (718)
                      ++.+...
T Consensus       285 ~~~t~~~  291 (313)
T 2ekl_A          285 GAQTKEA  291 (313)
T ss_dssp             TTCSHHH
T ss_pred             CcCcHHH
Confidence            8765443

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.79  E-value=3.7e-19  Score=190.53  Aligned_cols=219  Identities=13%  Similarity=0.073  Sum_probs=141.8

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++......   ++.+.|. |.....+.++
T Consensus        70 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~w~-~~~~~~~~~l  144 (331)
T 1xdw_A           70 VKYILTRTAGTDHIDKE-YAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSR---TAKKNFK-VDAFMFSKEV  144 (331)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHH---HTTTCCC-CCSTTCCCCG
T ss_pred             ceEEEEccccccccCHH-HHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHH---HHcCCCc-cccCcCccCC
Confidence            45566666666666554 66999999997754433333333333  3344544332211   1112222 1133457899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~lI~~e~l  422 (718)
                      .|+||||||+|+||+.+|+++++||++|+++|+++....   ..+....++++++++||+|+++    ..|+++|+++.|
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~---~~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l  221 (331)
T 1xdw_A          145 RNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFEIKGI---EDYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFL  221 (331)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSC---TTTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHH
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCccHHH---HhccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHH
Confidence            999999999999999999999999999999998775432   1235567999999999999986    357899999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccc-cchhhHHHHhhhccccc-cccccccc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRT-KHLTTEALLATCNSLFK-YSLVNTIH  491 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e-~~~~~eal~n~~~~~~~-~nlv~~~h  491 (718)
                      +.||+|+++||+||+. .+|.++|.+.         ++|+++.+|...+..+. .....+.   ....+-. +|++.|||
T Consensus       222 ~~mk~ga~lin~srg~-~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~---~~~L~~~~~nvilTPH  297 (331)
T 1xdw_A          222 KKMKDGAILVNCARGQ-LVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPL---FEKLVDLYPRVLITPH  297 (331)
T ss_dssp             HTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHH---HHHHHHTTTTEEECCS
T ss_pred             hhCCCCcEEEECCCcc-cccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccc---hHHHHhCCCCEEEcCc
Confidence            9999999999999985 4666555542         24555554421000000 0000000   0012234 79999999


Q ss_pred             CCcccccc
Q psy7896         492 EAPTLLVH  499 (718)
Q Consensus       492 ~~a~~~~Y  499 (718)
                      .++.+...
T Consensus       298 ia~~t~~~  305 (331)
T 1xdw_A          298 LGSYTDEA  305 (331)
T ss_dssp             CTTCSHHH
T ss_pred             cccChHHH
Confidence            88765444

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.79  E-value=6.2e-19  Score=188.90  Aligned_cols=215  Identities=15%  Similarity=0.126  Sum_probs=143.2

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++....-.   ++.+.|.  +....+.++
T Consensus        71 Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~w~--~~~~~~~~l  144 (333)
T 1j4a_A           71 ITKMSLRNVGVDNIDMA-KAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEK---VARHDLR--WAPTIGREV  144 (333)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHH---HHTTBCC--CTTCCBCCG
T ss_pred             CeEEEECCcccccccHH-HHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHH---HHcCCCc--cCCcccccC
Confidence            45566666666666654 66899999997754333333333333  3444654333211   1112222  233467899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTT----GCKDIIRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~at----gt~~lI~~e~  421 (718)
                      .|+||||||+|+||+.+|+++++||++|+++|+++.....   .+..+. ++++++++||+|+++.    .|+++|+++.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~~---~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~  221 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPELE---KKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDES  221 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHHH---HTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcchhHH---hhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHH
Confidence            9999999999999999999999999999999988765421   234555 8999999999999973    3789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchh----hHHHHhhhcccccccccc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLT----TEALLATCNSLFKYSLVN  488 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~----~eal~n~~~~~~~~nlv~  488 (718)
                      |+.||+|++|||+||+. .+|.++|.+.         ++|+++.+|...+..+.+.-.    ..++.+      .+|++.
T Consensus       222 l~~mk~ga~lIn~arg~-~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~------~~nvil  294 (333)
T 1j4a_A          222 IAKMKQDVVIVNVSRGP-LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIA------RPNVLV  294 (333)
T ss_dssp             HHHSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHH------CTTEEE
T ss_pred             HhhCCCCcEEEECCCCc-ccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHh------CCCEEE
Confidence            99999999999999986 4676655542         345555555321111100000    012322      379999


Q ss_pred             cccCCcccccc
Q psy7896         489 TIHEAPTLLVH  499 (718)
Q Consensus       489 ~~h~~a~~~~Y  499 (718)
                      |||.++.+...
T Consensus       295 TPHia~~t~~~  305 (333)
T 1j4a_A          295 TPKTAFYTTHA  305 (333)
T ss_dssp             CSSCTTCBHHH
T ss_pred             CCccccCHHHH
Confidence            99988765444

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.78  E-value=1.7e-18  Score=184.60  Aligned_cols=209  Identities=10%  Similarity=0.009  Sum_probs=143.4

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh-hhhhccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ-AKYLDIM  345 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~-~~~~g~e  345 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++.+  +.+.|++....-.   ++.+.|..+. ..+.+.+
T Consensus        68 Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~w~~~~~~~~~~~~  143 (320)
T 1gdh_A           68 IKCISTYSIGFDHIDLD-ACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKM---IRTRSWPGWEPLELVGEK  143 (320)
T ss_dssp             CCEEEEESSCCTTBCHH-HHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCCCCCCTTTTCBCC
T ss_pred             ceEEEECCcccccccHH-HHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHH---HHcCCCCccccccccCcC
Confidence            56677777777777665 67899999997765444444444333  3344554332211   1122232111 1345789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEec-CCccHHHHhhcCceec-CHHHHhccCcEEEEcC----CCCCCcCH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQASMEGYEVT-TMEEAAKEGGIFVTTT----GCKDIIRG  419 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~-dp~~al~a~~~G~~v~-~Leell~~aDiIi~at----gt~~lI~~  419 (718)
                      +.|++|||||+|+||+.+|+++++||++|+++|+ ++... .+...|.... ++++++++||+|+++.    .++++|++
T Consensus       144 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~  222 (320)
T 1gdh_A          144 LDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSS-DEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK  222 (320)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcChh-hhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCH
Confidence            9999999999999999999999999999999998 77553 3334576666 8999999999999873    47899999


Q ss_pred             HHHhcCCCCeEEEEcCCCCccccHHHHhc----c-----ccceeeecCCcccCccccchhhHHHHhhhcccccccccccc
Q psy7896         420 EHFLQMRDDAIVCNIGHFDCEIQVSWLDK----N-----AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTI  490 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd~Eid~~aL~~----~-----~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~  490 (718)
                      +.++.||+|++|||+||+. .+|.++|.+    .     ++|+++.+|..                ..+.+-.+|++.||
T Consensus       223 ~~l~~mk~gailIn~arg~-~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~----------------~~~L~~~~nviltP  285 (320)
T 1gdh_A          223 ATIKSLPQGAIVVNTARGD-LVDNELVVAALEAGRLAYAGFDVFAGEPNI----------------NEGYYDLPNTFLFP  285 (320)
T ss_dssp             HHHTTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCTTTTSC----------------CTTGGGCTTEEECS
T ss_pred             HHHhhCCCCcEEEECCCCc-ccCHHHHHHHHHhCCCcEEEEeCCCCCCCC----------------CChhhhCCCEEECC
Confidence            9999999999999999985 466555443    2     23444333311                11122237999999


Q ss_pred             cCCcccccc
Q psy7896         491 HEAPTLLVH  499 (718)
Q Consensus       491 h~~a~~~~Y  499 (718)
                      |.++.+...
T Consensus       286 H~~~~t~~~  294 (320)
T 1gdh_A          286 HIGSAATQA  294 (320)
T ss_dssp             SCTTCBHHH
T ss_pred             cCCcCcHHH
Confidence            988765444

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.77  E-value=2.8e-19  Score=190.51  Aligned_cols=194  Identities=12%  Similarity=-0.050  Sum_probs=122.4

Q ss_pred             HHhcCCeEEEeecCc-hhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecChhHHHHH
Q psy7896         288 LRLFGSRVIVTEIDP-INALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCA  364 (718)
Q Consensus       288 Lra~Gv~VtV~D~dp-~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA  364 (718)
                      +..+|+.|+.+.... ...+..++.+  +.+.|++....-.   .+.+.   |.. ..+.++.||||||||+|+||+.+|
T Consensus        83 ~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~---W~~-~~~~~l~g~tvGIiG~G~IG~~vA  155 (315)
T 3pp8_A           83 MLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQAL---KNQAL---WKP-LPEYTREEFSVGIMGAGVLGAKVA  155 (315)
T ss_dssp             SSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTC---CCC-CCCCCSTTCCEEEECCSHHHHHHH
T ss_pred             hhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHH---HHhcc---cCC-CCCCCcCCCEEEEEeeCHHHHHHH
Confidence            456788888754322 2233333333  3344544322211   11111   222 257899999999999999999999


Q ss_pred             HHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHHHhcCCCCeEEEEcCCCCcc
Q psy7896         365 QSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEHFLQMRDDAIVCNIGHFDCE  440 (718)
Q Consensus       365 ~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~l~~MK~gAiLIN~GRgd~E  440 (718)
                      +++++||++|+++++++...... .......++++++++||+|+++.    .|+++|+++.|+.||+|++|||+|||. -
T Consensus       156 ~~l~~~G~~V~~~dr~~~~~~~~-~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~-~  233 (315)
T 3pp8_A          156 ESLQAWGFPLRCWSRSRKSWPGV-ESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGV-H  233 (315)
T ss_dssp             HHHHTTTCCEEEEESSCCCCTTC-EEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGG-G
T ss_pred             HHHHHCCCEEEEEcCCchhhhhh-hhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCCh-h
Confidence            99999999999999877532111 00011257999999999999873    478999999999999999999999996 4


Q ss_pred             ccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccc
Q psy7896         441 IQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTL  496 (718)
Q Consensus       441 id~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~  496 (718)
                      +|.++|.+..-+.......+||++.|..      ....+.+-.+|++.|||.++.+
T Consensus       234 vd~~aL~~aL~~g~i~gA~lDV~~~EPl------~~~~pL~~~~nvilTPHia~~t  283 (315)
T 3pp8_A          234 VQEADLLAALDSGKLKGAMLDVFSQEPL------PQESPLWRHPRVAMTPHIAAVT  283 (315)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSC------CTTCGGGGCTTEEECSSCSSCC
T ss_pred             hhHHHHHHHHHhCCccEEEcCCCCCCCC------CCCChhhcCCCEEECCCCCccc
Confidence            7766655421111111123333333321      1112223348999999987664

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.77  E-value=2.9e-18  Score=184.92  Aligned_cols=211  Identities=16%  Similarity=0.100  Sum_probs=139.3

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccch----hhhhhh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTE----DQAKYL  342 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~----~~~~~~  342 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+...+-+  +.+.|++......   ++.+.|..    .+....
T Consensus        86 Lk~I~~~~~G~d~id~~-~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~w~~~~~~~~~~~~  161 (347)
T 1mx3_A           86 LRIIVRIGSGFDNIDIK-SAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQA---LREGTRVQSVEQIREVAS  161 (347)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHH---HHTTCCCCSHHHHHHHTT
T ss_pred             CCEEEEcccccCcccHH-HHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHH---HHcCCccccccccccccc
Confidence            35666666666666654 67899999997765444444333333  3344544322211   11122211    001112


Q ss_pred             c-ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcC----CCCCC
Q psy7896         343 D-IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTT----GCKDI  416 (718)
Q Consensus       343 g-~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~at----gt~~l  416 (718)
                      + .++.|+||||||+|+||+.+|+++++||++|+++|+++.... +...|... .++++++++||+|+++.    .|+++
T Consensus       162 ~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~l  240 (347)
T 1mx3_A          162 GAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGV-ERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL  240 (347)
T ss_dssp             TCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTH-HHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTS
T ss_pred             CccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCcchhh-HhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHH
Confidence            3 689999999999999999999999999999999998765432 23346554 48999999999999863    47899


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhccccccccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLV  487 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv  487 (718)
                      |+++.|+.||+|++|||+||+. .+|.++|.+.         ++|+++.+|..         .     .....+..+|++
T Consensus       241 i~~~~l~~mk~gailIN~arg~-~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~---------~-----~~~~L~~~~nvi  305 (347)
T 1mx3_A          241 INDFTVKQMRQGAFLVNTARGG-LVDEKALAQALKEGRIRGAALDVHESEPFS---------F-----SQGPLKDAPNLI  305 (347)
T ss_dssp             BSHHHHTTSCTTEEEEECSCTT-SBCHHHHHHHHHHTSEEEEEESCCSSSSCC---------T-----TSSTTTTCSSEE
T ss_pred             hHHHHHhcCCCCCEEEECCCCh-HHhHHHHHHHHHhCCCcEEEEeecccCCCC---------C-----CCchHHhCCCEE
Confidence            9999999999999999999996 4665555442         23444444421         0     001122348999


Q ss_pred             ccccCCcccccc
Q psy7896         488 NTIHEAPTLLVH  499 (718)
Q Consensus       488 ~~~h~~a~~~~Y  499 (718)
                      .|||.++.+...
T Consensus       306 ~tPHia~~t~~~  317 (347)
T 1mx3_A          306 CTPHAAWYSEQA  317 (347)
T ss_dssp             ECSSCTTCCHHH
T ss_pred             EEchHHHHHHHH
Confidence            999988765443

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.75  E-value=1.4e-17  Score=188.48  Aligned_cols=171  Identities=16%  Similarity=0.198  Sum_probs=123.4

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|..+.++. +++++|+.|+.+.......+..++-+  +.+.|++...+-.   .+.+.|.  +..+.+.++
T Consensus        67 Lk~i~~~~~G~d~id~~-~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~---~~~g~w~--~~~~~~~~l  140 (529)
T 1ygy_A           67 LKIVARAGVGLDNVDVD-AATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADAS---LREHTWK--RSSFSGTEI  140 (529)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCCC--GGGCCBCCC
T ss_pred             CcEEEECCcCcCccCHh-HHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHH---HHhCCCc--ccCcCcccc
Confidence            34555555555555544 67899999997755444444433333  3445655333211   1112221  234568899


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~l  422 (718)
                      .||||||||+|+||+.+|++++++|++|++||+++.. ..+...|+...++++++++||+|++++    .+.++++++.+
T Consensus       141 ~g~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~  219 (529)
T 1ygy_A          141 FGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEAL  219 (529)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHH
Confidence            9999999999999999999999999999999887643 234455777779999999999999974    57899999899


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      +.||+|++++|+||+. .+|.++|.
T Consensus       220 ~~~k~g~ilin~arg~-iv~~~aL~  243 (529)
T 1ygy_A          220 AKTKPGVIIVNAARGG-LVDEAALA  243 (529)
T ss_dssp             TTSCTTEEEEECSCTT-SBCHHHHH
T ss_pred             hCCCCCCEEEECCCCc-hhhHHHHH
Confidence            9999999999999996 36654443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.75  E-value=5.9e-18  Score=179.83  Aligned_cols=212  Identities=18%  Similarity=0.100  Sum_probs=138.3

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh-hhhhccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ-AKYLDIM  345 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~-~~~~g~e  345 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++......   ++.+.|..+. ..+.+.+
T Consensus        66 Lk~i~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~w~~~~~~~~~~~~  141 (311)
T 2cuk_A           66 LKVIACYSVGVDHVDLE-AARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAY---ARDGLWKAWHPELLLGLD  141 (311)
T ss_dssp             CCEEECSSSCCTTBCHH-HHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTCCCCCCTTTTCBCC
T ss_pred             CeEEEECCcCccccCHH-HHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHH---HHcCCCCccccccccCcC
Confidence            45556666666666554 67899999997665444443333333  3344544332211   1112232111 1234789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEH  421 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~  421 (718)
                      +.|+||||||+|+||+.+|+++++||++|+++|+++....      ....++++++++||+|+++.    .++++|+++.
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~~~~------~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~  215 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTPKPLP------YPFLSLEELLKEADVVSLHTPLTPETHRLLNRER  215 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSSS------SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHH
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCCcccc------cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHH
Confidence            9999999999999999999999999999999998775432      24568999999999999972    4789999999


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhccccceeeec-CCcccCccccchhhHHHHhhhcccccccccccccCCcccccc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVK-PQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTLLVH  499 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~-P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~~~Y  499 (718)
                      ++.||+|+++||+||+. .+|.++|.+. ++ ..+. ..+|+++.|....      ....+-.+|++.|||.++.+...
T Consensus       216 l~~mk~ga~lin~srg~-~vd~~aL~~a-L~-g~i~ga~lDv~~~eP~~~------~~~L~~~~nviltPh~~~~t~~~  285 (311)
T 2cuk_A          216 LFAMKRGAILLNTARGA-LVDTEALVEA-LR-GHLFGAGLDVTDPEPLPP------GHPLYALPNAVITPHIGSAGRTT  285 (311)
T ss_dssp             HTTSCTTCEEEECSCGG-GBCHHHHHHH-HT-TTSSEEEESSCSSSSCCT------TSGGGGCTTEEECCSCTTCBHHH
T ss_pred             HhhCCCCcEEEECCCCC-ccCHHHHHHH-Hh-CcCCEEEEeeCCCCCCCC------CChhhhCCCEEECCcCCCCCHHH
Confidence            99999999999999985 4665555442 11 1111 1233333332111      11122237999999988765443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.75  E-value=9.6e-18  Score=180.72  Aligned_cols=219  Identities=14%  Similarity=0.034  Sum_probs=141.6

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhh-----hh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQA-----KY  341 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~-----~~  341 (718)
                      -|-|...|.|....+.. +++++|+.|+.+.......+..++.+  +.+.|++....-.   ++.+....|+.     ..
T Consensus        81 Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~---~~~g~~~~w~~~~~~~~~  156 (348)
T 2w2k_A           81 LKVFAAAGAGFDWLDLD-ALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERA---ARTGDPETFNRVHLEIGK  156 (348)
T ss_dssp             CCEEEESSSCCTTBCHH-HHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHH---HTTCCHHHHHHHHHHHHT
T ss_pred             ceEEEECCccccccCHH-HHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHH---HHcCCCcccccccccccc
Confidence            55666666666666654 67999999997655444444333333  3344554332211   11122000211     13


Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHH-hCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcC----CCCC
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLR-LFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTT----GCKD  415 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~-~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~at----gt~~  415 (718)
                      .+.++.|++|||||+|+||+.+|++++ +||++|+++|+++.....+...|.... ++++++++||+|+++.    .+++
T Consensus       157 ~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~  236 (348)
T 2w2k_A          157 SAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHH  236 (348)
T ss_dssp             TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTT
T ss_pred             cCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHH
Confidence            578999999999999999999999999 999999999988754333333466666 8999999999999973    3679


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCcc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPT  495 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~  495 (718)
                      +|+++.++.||++++|||+||+. .+|.++|.+..-+........|+++.|. ....++.      -.+|++.|||.++.
T Consensus       237 li~~~~l~~mk~gailin~srg~-~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~------~~~nviltPH~~~~  308 (348)
T 2w2k_A          237 LIDEAFFAAMKPGSRIVNTARGP-VISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELI------EMKHVTLTTHIGGV  308 (348)
T ss_dssp             CBCHHHHHHSCTTEEEEECSCGG-GBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHH------TSSSEEECCSCTTC
T ss_pred             HhhHHHHhcCCCCCEEEECCCCc-hhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhh------cCCCEEEcCcCCCC
Confidence            99999999999999999999995 4665555542111111112334443331 1111222      23789999998766


Q ss_pred             cccc
Q psy7896         496 LLVH  499 (718)
Q Consensus       496 ~~~Y  499 (718)
                      +...
T Consensus       309 t~e~  312 (348)
T 2w2k_A          309 AIET  312 (348)
T ss_dssp             SHHH
T ss_pred             CHHH
Confidence            5433

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.72  E-value=7.4e-18  Score=178.52  Aligned_cols=207  Identities=15%  Similarity=0.080  Sum_probs=129.7

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhcccc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIML  346 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL  346 (718)
                      -|-|...|.|....+...  .++|+.|+.........+..++-+  +.+.|++....-.   ++.+.   |.......++
T Consensus        51 Lk~I~~~~~G~d~id~~~--~~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~---w~~~~~~~~l  122 (303)
T 1qp8_A           51 LKFIQVVTAGLDHLPWES--IPPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEK---MKRGD---YGRDVEIPLI  122 (303)
T ss_dssp             CCCEEBSSSCCTTSCCTT--SCTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTC---CCCCSCCCCC
T ss_pred             CcEEEECCcCcccccHHH--HhcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHH---HHcCC---CCCCCCCCCC
Confidence            445555555555555542  368888886544333333333333  3344544322211   11112   2211123589


Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGEHF  422 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e~l  422 (718)
                      .||||||||+|+||+.+|+++++||++|+++|+++. .  .  ......++++++++||+|+++.    .|+++|+++.|
T Consensus       123 ~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~~-~--~--~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l  197 (303)
T 1qp8_A          123 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK-E--G--PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHL  197 (303)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC-C--S--SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcc-c--c--CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHH
Confidence            999999999999999999999999999999998775 1  1  2234568999999999999873    57899999999


Q ss_pred             hcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccC-ccccchhhHHHHhhhcccccccccccccCCcc
Q psy7896         423 LQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPT-SRTKHLTTEALLATCNSLFKYSLVNTIHEAPT  495 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~-s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~  495 (718)
                      +.||+|+++||+||+. .+|.++|.+..-+........|++ +.|......++.      -.+|++.|||.++.
T Consensus       198 ~~mk~gailin~srg~-~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~------~~~nviltPH~~~~  264 (303)
T 1qp8_A          198 ALMAEDAVFVNVGRAE-VLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFF------SLPNVVATPWVAGG  264 (303)
T ss_dssp             TTSCTTCEEEECSCGG-GBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHH------TSTTEEECCSCSSS
T ss_pred             hhCCCCCEEEECCCCc-ccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhh------cCCCEEECCCcCCC
Confidence            9999999999999985 466555544210111111233444 222111122222      23799999997764

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.72  E-value=8e-18  Score=177.43  Aligned_cols=142  Identities=14%  Similarity=0.142  Sum_probs=103.3

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEc----CCCCCCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTT----TGCKDII  417 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~a----tgt~~lI  417 (718)
                      ..++.||||||||+|+||+.+|+++++||++|++||+++....     .... .++++++++||+|+++    ..|+++|
T Consensus       117 ~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li  191 (290)
T 3gvx_A          117 TTLLYGKALGILGYGGIGRRVAHLAKAFGMRVIAYTRSSVDQN-----VDVISESPADLFRQSDFVLIAIPLTDKTRGMV  191 (290)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCB
T ss_pred             ceeeecchheeeccCchhHHHHHHHHhhCcEEEEEeccccccc-----cccccCChHHHhhccCeEEEEeeccccchhhh
Confidence            3689999999999999999999999999999999998765421     1333 4899999999999986    3578999


Q ss_pred             CHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCC-ccc
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEA-PTL  496 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~-a~~  496 (718)
                      +++.|+.||+|++|||+||+. .+|.++|.+..-+.......+|+++.|..         .+.+-.+|++.|||.+ +.+
T Consensus       192 ~~~~l~~mk~gailIN~aRG~-~vd~~aL~~aL~~g~i~ga~lDV~~~EP~---------~pL~~~~nvilTPHiag~~t  261 (290)
T 3gvx_A          192 NSRLLANARKNLTIVNVARAD-VVSKPDMIGFLKERSDVWYLSDVWWNEPE---------ITETNLRNAILSPHVAGGMS  261 (290)
T ss_dssp             SHHHHTTCCTTCEEEECSCGG-GBCHHHHHHHHHHCTTCEEEESCCTTTTS---------CCSCCCSSEEECCSCSSCBT
T ss_pred             hHHHHhhhhcCceEEEeehhc-ccCCcchhhhhhhccceEEeeccccCCcc---------cchhhhhhhhcCccccCCcc
Confidence            999999999999999999996 46766655421111111122333333321         2233348999999966 554


Q ss_pred             ccc
Q psy7896         497 LVH  499 (718)
Q Consensus       497 ~~Y  499 (718)
                      ..+
T Consensus       262 ~e~  264 (290)
T 3gvx_A          262 GEI  264 (290)
T ss_dssp             TBC
T ss_pred             chH
Confidence            333

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.72  E-value=2.4e-17  Score=176.81  Aligned_cols=205  Identities=15%  Similarity=0.098  Sum_probs=137.8

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+...+-+  +.+.|++....-.   ++.+.|.. .....+.+
T Consensus        87 ~Lk~I~~~~~G~d~id~~-~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~---~~~g~w~~-~~~~~~~~  161 (333)
T 3ba1_A           87 KLEIVSSFSVGLDKVDLI-KCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKY---VRRGAWKF-GDFKLTTK  161 (333)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHH---HHTTGGGG-CCCCCCCC
T ss_pred             CCcEEEEcCccccccCHH-HHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHH---HHcCCCCc-cccccccc
Confidence            356666666666666654 67899999997655444444433333  3334544322211   11112210 11134789


Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcC----CCCCCcCHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTT----GCKDIIRGE  420 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~at----gt~~lI~~e  420 (718)
                      +.||+|||||+|+||+.+|++++++|++|+++|+++...     .|+. ..++++++++||+|+++.    .++++|+++
T Consensus       162 l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~  236 (333)
T 3ba1_A          162 FSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPETTHIINRE  236 (333)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHH
Confidence            999999999999999999999999999999999877532     2444 468999999999999973    368999999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhccccccccccccc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIH  491 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h  491 (718)
                      .++.||++++|||++|+. .+|.++|.+.         ++|++..+|..               + ...+-.+|++.|||
T Consensus       237 ~l~~mk~gailIn~srG~-~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~---------------~-~~L~~~~nviltPH  299 (333)
T 3ba1_A          237 VIDALGPKGVLINIGRGP-HVDEPELVSALVEGRLGGAGLDVFEREPEV---------------P-EKLFGLENVVLLPH  299 (333)
T ss_dssp             HHHHHCTTCEEEECSCGG-GBCHHHHHHHHHHTSSCEEEESCCTTTTCC---------------C-GGGGGCTTEEECSS
T ss_pred             HHhcCCCCCEEEECCCCc-hhCHHHHHHHHHcCCCeEEEEecCCCCCCC---------------c-chhhcCCCEEECCc
Confidence            999999999999999996 4665555442         13443333321               1 11223379999999


Q ss_pred             CCcccccc
Q psy7896         492 EAPTLLVH  499 (718)
Q Consensus       492 ~~a~~~~Y  499 (718)
                      .++.+...
T Consensus       300 ~~~~t~e~  307 (333)
T 3ba1_A          300 VGSGTVET  307 (333)
T ss_dssp             CTTCSHHH
T ss_pred             CCCCCHHH
Confidence            87765443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.72  E-value=6e-17  Score=173.06  Aligned_cols=176  Identities=17%  Similarity=0.105  Sum_probs=123.8

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhh-hhhhcc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQ-AKYLDI  344 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~-~~~~g~  344 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+...+.+  +.+.|++....-   .++.+.|..+. ..+.+.
T Consensus        76 ~Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~---~~~~~~w~~~~~~~~~~~  151 (330)
T 2gcg_A           76 NLKVISTMSVGIDHLALD-EIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIE---EVKNGGWTSWKPLWLCGY  151 (330)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHH---HHHTTCCCSCCTTSSCBC
T ss_pred             CceEEEECCcccccccHH-HHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHH---HHHcCCCcccCcccccCc
Confidence            356666666666666554 67899999997765444444433333  333454422221   11122232211 123478


Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcCHH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIRGE  420 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~~e  420 (718)
                      ++.|++|||||+|+||+.+|+.++++|++|+++|+++.....+...|....+++++++++|+|+++.    .++++++++
T Consensus       152 ~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~  231 (330)
T 2gcg_A          152 GLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKD  231 (330)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHH
Confidence            9999999999999999999999999999999999877543333344666669999999999999873    368899999


Q ss_pred             HHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         421 HFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      .++.||++++|||++|+. .+|.++|.+
T Consensus       232 ~~~~mk~gailIn~srg~-~v~~~aL~~  258 (330)
T 2gcg_A          232 FFQKMKETAVFINISRGD-VVNQDDLYQ  258 (330)
T ss_dssp             HHHHSCTTCEEEECSCGG-GBCHHHHHH
T ss_pred             HHhcCCCCcEEEECCCCc-ccCHHHHHH
Confidence            999999999999999985 455555443

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.71  E-value=4e-17  Score=174.89  Aligned_cols=173  Identities=16%  Similarity=0.090  Sum_probs=120.3

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccchhhhhhhc--
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLTEDQAKYLD--  343 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g--  343 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+..++-+  +.+.|++....-.   ++.+.|..+.....+  
T Consensus        64 ~Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~g~w~~~~~~~~~~~  139 (333)
T 2d0i_A           64 RLKVISCHSAGYDNIDLE-EATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKF---IRRGEWESHAKIWTGFK  139 (333)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHH---HHTTCCCCHHHHHTTSC
T ss_pred             CceEEEECCcccccccHH-HHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHH---HHcCCCCcCcccccCCc
Confidence            456666666666666654 67899999997643333333333333  3334544222211   111223211122346  


Q ss_pred             --ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCc
Q psy7896         344 --IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDII  417 (718)
Q Consensus       344 --~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI  417 (718)
                        .++.|++|||||+|+||+.+|++++++|++|+++|+++.. ..+...|....++++++++||+|+++.    .+++++
T Consensus       140 ~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i  218 (333)
T 2d0i_A          140 RIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYMDIDELLEKSDIVILALPLTRDTYHII  218 (333)
T ss_dssp             CCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSB
T ss_pred             ccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHh
Confidence              7999999999999999999999999999999999988765 223334666679999999999999873    468899


Q ss_pred             CHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      +++.++.||++ ++||+||+. .+|.++|.
T Consensus       219 ~~~~~~~mk~g-ilin~srg~-~vd~~aL~  246 (333)
T 2d0i_A          219 NEERVKKLEGK-YLVNIGRGA-LVDEKAVT  246 (333)
T ss_dssp             CHHHHHHTBTC-EEEECSCGG-GBCHHHHH
T ss_pred             CHHHHhhCCCC-EEEECCCCc-ccCHHHHH
Confidence            98889999999 999999985 46654443

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.71  E-value=1.1e-16  Score=171.39  Aligned_cols=174  Identities=16%  Similarity=0.098  Sum_probs=122.1

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh--hhhhHHHHHHHHHHhcccccccc----hhh-hh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--YELDEEVAALHLEHLGVKLTKLT----EDQ-AK  340 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG--f~L~r~i~~~~l~~lgv~~~~~~----~~~-~~  340 (718)
                      .-|-|...|.|....+.. +++++|+.|+.+.......+..++.+  +.+.|++....-.   ++.+.|.    .+. ..
T Consensus        67 ~Lk~I~~~~~G~d~id~~-~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~---~~~~~w~~~~~~~~~~~  142 (334)
T 2dbq_A           67 KLRIVANYAVGYDNIDIE-EATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRF---VRSGEWKKRGVAWHPKW  142 (334)
T ss_dssp             TCCEEEESSSCCTTBCHH-HHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHH---HHTSHHHHTTCCCCTTT
T ss_pred             CceEEEECCcccccccHH-HHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHH---HHcCCCccccccccccc
Confidence            355666666666666654 67899999997665444444433333  3344544322211   1112221    111 12


Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDI  416 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~l  416 (718)
                      +.+.++.|++|||||+|+||+.+|++++++|++|+++|+++.. ..+...|....++++++++||+|+++.    .++++
T Consensus       143 ~~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~  221 (334)
T 2dbq_A          143 FLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHL  221 (334)
T ss_dssp             TCCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             ccccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHh
Confidence            3478999999999999999999999999999999999988765 222234667779999999999999873    26789


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      ++++.++.||++++|||+||+. .+|.++|.
T Consensus       222 i~~~~~~~mk~~ailIn~srg~-~v~~~aL~  251 (334)
T 2dbq_A          222 INEERLKLMKKTAILINIARGK-VVDTNALV  251 (334)
T ss_dssp             BCHHHHHHSCTTCEEEECSCGG-GBCHHHHH
T ss_pred             hCHHHHhcCCCCcEEEECCCCc-ccCHHHHH
Confidence            9988999999999999999985 46644443

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.53  E-value=4.4e-14  Score=147.99  Aligned_cols=149  Identities=14%  Similarity=0.174  Sum_probs=107.9

Q ss_pred             cCCCChhHHHHHHhcCCeEEEeecCc---hhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEE
Q psy7896         277 YGDVGKGCAQSLRLFGSRVIVTEIDP---INALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVV  353 (718)
Q Consensus       277 yG~vG~~~A~aLra~Gv~VtV~D~dp---~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGI  353 (718)
                      .|..+.+...+++++|+.|+.+...+   .....+++++.       ...+.              .+.+.++.|++|||
T Consensus       102 ~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a-------~~~~l--------------~~~~~~l~g~~v~I  160 (293)
T 3d4o_A          102 SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGT-------IMMAI--------------QHTDFTIHGANVAV  160 (293)
T ss_dssp             ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHH-------HHHHH--------------HHCSSCSTTCEEEE
T ss_pred             ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHH-------HHHHH--------------HhcCCCCCCCEEEE
Confidence            34455665457899999998765422   11222222211       11111              12357899999999


Q ss_pred             EecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee---cCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeE
Q psy7896         354 AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV---TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAI  430 (718)
Q Consensus       354 IG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v---~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAi  430 (718)
                      ||+|+||+.+|++++++|++|+++|+++.+...+...|..+   .+++++++++|+|++++.. ++++++.++.||++++
T Consensus       161 iG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~~~l~~mk~~~~  239 (293)
T 3d4o_A          161 LGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPA-LVVTANVLAEMPSHTF  239 (293)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSS-CCBCHHHHHHSCTTCE
T ss_pred             EeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCCh-HHhCHHHHHhcCCCCE
Confidence            99999999999999999999999998875433333346554   4788999999999999865 7999999999999999


Q ss_pred             EEEcCCCCccccHHHHh
Q psy7896         431 VCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       431 LIN~GRgd~Eid~~aL~  447 (718)
                      +||++|+...++++...
T Consensus       240 lin~ar~~~~~~~~~a~  256 (293)
T 3d4o_A          240 VIDLASKPGGTDFRYAE  256 (293)
T ss_dssp             EEECSSTTCSBCHHHHH
T ss_pred             EEEecCCCCCCCHHHHH
Confidence            99999986666664433

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.49  E-value=2.3e-13  Score=142.84  Aligned_cols=154  Identities=12%  Similarity=0.120  Sum_probs=110.4

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccC
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG  348 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~G  348 (718)
                      ++.+. .|+  ...++..+++++|+.|+.++..+..         .+.|++....        +.|.. .....+.++.|
T Consensus        99 l~~i~-~g~--~~~d~~~~~~~~gi~v~~~~~~~~v---------~~~r~~~~~~--------g~~~~-~~~~~~~~l~g  157 (300)
T 2rir_A           99 HCVIF-SGI--SNAYLENIAAQAKRKLVKLFERDDI---------AIYNSIPTVE--------GTIML-AIQHTDYTIHG  157 (300)
T ss_dssp             TCEEE-ESS--CCHHHHHHHHHTTCCEEEGGGSHHH---------HHHHHHHHHH--------HHHHH-HHHTCSSCSTT
T ss_pred             CCEEE-Eec--CCHHHHHHHHHCCCEEEeecCCCce---------EEEcCccHHH--------HHHHH-HHHhcCCCCCC
Confidence            44433 555  5566556789999999987654311         1222221110        01100 11235789999


Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee---cCHHHHhccCcEEEEcCCCCCCcCHHHHhcC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV---TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQM  425 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v---~~Leell~~aDiIi~atgt~~lI~~e~l~~M  425 (718)
                      ++|||||+|+||+.+|++++++|++|+++|+++.+.......|...   .+++++++++|+|+++++. ++++++.++.|
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~-~~i~~~~~~~m  236 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPS-MILNQTVLSSM  236 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSS-CCBCHHHHTTS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCCh-hhhCHHHHHhC
Confidence            9999999999999999999999999999998875433222345543   5789999999999999876 79999999999


Q ss_pred             CCCeEEEEcCCCCccccHH
Q psy7896         426 RDDAIVCNIGHFDCEIQVS  444 (718)
Q Consensus       426 K~gAiLIN~GRgd~Eid~~  444 (718)
                      |+++++||++|+....+++
T Consensus       237 k~g~~lin~a~g~~~~~~~  255 (300)
T 2rir_A          237 TPKTLILDLASRPGGTDFK  255 (300)
T ss_dssp             CTTCEEEECSSTTCSBCHH
T ss_pred             CCCCEEEEEeCCCCCcCHH
Confidence            9999999999986555553

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.22  E-value=1.5e-10  Score=126.91  Aligned_cols=94  Identities=22%  Similarity=0.258  Sum_probs=78.7

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec----------------------------C
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT----------------------------T  396 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~----------------------------~  396 (718)
                      ++.|++|+|+|+|.||+.+++.|+++|++|+++|+++.+..++...|..+.                            +
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  248 (401)
T 1x13_A          169 KVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMEL  248 (401)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHH
Confidence            688999999999999999999999999999999998876444433465433                            2


Q ss_pred             HHHHhccCcEEEEcC---C--CCCCcCHHHHhcCCCCeEEEEcC--CCC
Q psy7896         397 MEEAAKEGGIFVTTT---G--CKDIIRGEHFLQMRDDAIVCNIG--HFD  438 (718)
Q Consensus       397 Leell~~aDiIi~at---g--t~~lI~~e~l~~MK~gAiLIN~G--Rgd  438 (718)
                      ++++++.+|+|+.++   +  +.++++++.++.||+|+++||+|  ++.
T Consensus       249 l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg  297 (401)
T 1x13_A          249 FAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGG  297 (401)
T ss_dssp             HHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTC
T ss_pred             HHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCC
Confidence            678888999999884   3  45789999999999999999999  654

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.19  E-value=3.6e-10  Score=122.88  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=78.6

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec---C------------------------
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT---T------------------------  396 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~---~------------------------  396 (718)
                      ..+.|++|+|+|+|.||+.+++.++++|++|+++|+++.+...+...|..+.   .                        
T Consensus       168 ~~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~  247 (384)
T 1l7d_A          168 GTVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQ  247 (384)
T ss_dssp             EEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhh
Confidence            3689999999999999999999999999999999998876544434554433   1                        


Q ss_pred             ---HHHHhccCcEEEEcC---C--CCCCcCHHHHhcCCCCeEEEEcC--CC
Q psy7896         397 ---MEEAAKEGGIFVTTT---G--CKDIIRGEHFLQMRDDAIVCNIG--HF  437 (718)
Q Consensus       397 ---Leell~~aDiIi~at---g--t~~lI~~e~l~~MK~gAiLIN~G--Rg  437 (718)
                         ++++++.+|+|+.++   +  ++++++.+.++.||+|++++|+|  ++
T Consensus       248 ~~~l~~~~~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~g  298 (384)
T 1l7d_A          248 AEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAG  298 (384)
T ss_dssp             HHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGT
T ss_pred             HHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCC
Confidence               678889999999887   5  34689999999999999999999  54

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.09  E-value=1.6e-09  Score=118.04  Aligned_cols=156  Identities=19%  Similarity=0.212  Sum_probs=100.7

Q ss_pred             CChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhccc-ccccchhhhhhhcccccCcEEEEEecCh
Q psy7896         280 VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVK-LTKLTEDQAKYLDIMLAGKVAVVAGYGD  358 (718)
Q Consensus       280 vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~-~~~~~~~~~~~~g~eL~GktVGIIG~G~  358 (718)
                      -+....+.|.++|+...-+|.-|........+.+...-+++...-...+.. +.+.....-.. -..+.+++|+|||+|.
T Consensus       116 ~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av~~aa~~l~~~~~~l~~~-~~~v~~~kV~ViG~G~  194 (381)
T 3p2y_A          116 TQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAVLLGASLSTRFVPMLTTA-AGTVKPASALVLGVGV  194 (381)
T ss_dssp             TCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEECS-SCEECCCEEEEESCSH
T ss_pred             cCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHHHHHHHHhhhhhhhhhcc-cCCcCCCEEEEECchH
Confidence            357778889999998887877663211111222221111211100000000 00000000000 1246899999999999


Q ss_pred             hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--------------------------CHHHHhccCcEEEEcC-
Q psy7896         359 VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--------------------------TMEEAAKEGGIFVTTT-  411 (718)
Q Consensus       359 IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--------------------------~Leell~~aDiIi~at-  411 (718)
                      ||..+|+.++++|++|+++|+++.+..++...|..+.                          +++++++++|+||++. 
T Consensus       195 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~  274 (381)
T 3p2y_A          195 AGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTAL  274 (381)
T ss_dssp             HHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCC
Confidence            9999999999999999999999876544444454432                          4678899999999863 


Q ss_pred             --C--CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         412 --G--CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       412 --g--t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                        +  +..+|+++.++.||+|+++||++-
T Consensus       275 iPg~~ap~Lvt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          275 VPGRPAPRLVTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             CTTSCCCCCBCHHHHHTSCTTCEEEETTG
T ss_pred             CCCcccceeecHHHHhcCCCCcEEEEEeC
Confidence              2  457899999999999999999984

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.07  E-value=1e-09  Score=119.19  Aligned_cols=92  Identities=18%  Similarity=0.206  Sum_probs=76.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCce-------ecCHHHHhccCcEEEEcC-----
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYE-------VTTMEEAAKEGGIFVTTT-----  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~-------v~~Leell~~aDiIi~at-----  411 (718)
                      ++.|++|+|+|+|.||+.+|+.++++|++|+++|+++.+...+.. .|..       ..+++++++.+|+|+.++     
T Consensus       165 ~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~  244 (377)
T 2vhw_A          165 GVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA  244 (377)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            689999999999999999999999999999999988765332222 2332       235778899999999864     


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .++++|+++.++.||+++++||+|.
T Consensus       245 ~t~~li~~~~l~~mk~g~~iV~va~  269 (377)
T 2vhw_A          245 KAPKLVSNSLVAHMKPGAVLVDIAI  269 (377)
T ss_dssp             CCCCCBCHHHHTTSCTTCEEEEGGG
T ss_pred             CCcceecHHHHhcCCCCcEEEEEec
Confidence            3567899999999999999999993

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.05  E-value=4.3e-09  Score=115.60  Aligned_cols=150  Identities=17%  Similarity=0.195  Sum_probs=100.2

Q ss_pred             CChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHH-----HHHhcccccccchhhhhhh--cccccCcEEE
Q psy7896         280 VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALH-----LEHLGVKLTKLTEDQAKYL--DIMLAGKVAV  352 (718)
Q Consensus       280 vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~-----l~~lgv~~~~~~~~~~~~~--g~eL~GktVG  352 (718)
                      -+....+.|.++|+...-+|.-|..........+...-+++...     ..++++.++       -.+  -..+.+.+|+
T Consensus       122 ~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~Av~~aa~~l~~~~~-------~l~t~~g~v~~~kV~  194 (405)
T 4dio_A          122 GNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQAVIDAAYEYDRALP-------MMMTAAGTVPAAKIF  194 (405)
T ss_dssp             TCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSS-------CEEETTEEECCCEEE
T ss_pred             cCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHHHHHHHHHhHhhhc-------hhhccCCCcCCCEEE
Confidence            36778889999999888888766321111111111111111100     000111110       001  1247899999


Q ss_pred             EEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------------------------------cCHHHHhc
Q psy7896         353 VAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------------------------------TTMEEAAK  402 (718)
Q Consensus       353 IIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------------------------------~~Leell~  402 (718)
                      |+|+|.||..+|+.++++|++|+++|+++.+...+...|..+                              .+++++++
T Consensus       195 ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~  274 (405)
T 4dio_A          195 VMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIA  274 (405)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHH
T ss_pred             EECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhc
Confidence            999999999999999999999999999987643333334332                              15678899


Q ss_pred             cCcEEEEc---C--CCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         403 EGGIFVTT---T--GCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       403 ~aDiIi~a---t--gt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      ++|+||++   +  ....+|+++.++.||+|+++||++-
T Consensus       275 ~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          275 KQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             TCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTG
T ss_pred             CCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeC
Confidence            99999987   3  3567899999999999999999983

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=98.97  E-value=1.6e-09  Score=117.18  Aligned_cols=95  Identities=19%  Similarity=0.254  Sum_probs=80.1

Q ss_pred             hcc-cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhc-cCcEEEEcCCCCCCcCH
Q psy7896         342 LDI-MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK-EGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       342 ~g~-eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~-~aDiIi~atgt~~lI~~  419 (718)
                      .|. ++.||||+|+|+|+||+.+|++|+.+||+|+++|+++.+...+...|.+.++.++++. +|||++.+ .+.++|+.
T Consensus       168 ~G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-A~~~~I~~  246 (355)
T 1c1d_A          168 RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-AMGGVITT  246 (355)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-SCSCCBCH
T ss_pred             cCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-HHHhhcCH
Confidence            366 7999999999999999999999999999999999887542112234667778889988 89999875 57789999


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.++.|| ..+++|.+++.
T Consensus       247 ~~~~~lk-~~iVie~AN~p  264 (355)
T 1c1d_A          247 EVARTLD-CSVVAGAANNV  264 (355)
T ss_dssp             HHHHHCC-CSEECCSCTTC
T ss_pred             HHHhhCC-CCEEEECCCCC
Confidence            9999998 68999999985

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=98.77  E-value=5.7e-08  Score=104.96  Aligned_cols=93  Identities=13%  Similarity=0.232  Sum_probs=74.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCce-------ecCHHHHhccCcEEEEcCC---
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYE-------VTTMEEAAKEGGIFVTTTG---  412 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~-------v~~Leell~~aDiIi~atg---  412 (718)
                      ..+.+++|+|+|.|.||+.+++.++++|++|+++|+++.+...+.. .|..       ..+++++++.+|+|+.+++   
T Consensus       162 ~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~  241 (369)
T 2eez_A          162 PGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPG  241 (369)
T ss_dssp             TBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCc
Confidence            3689999999999999999999999999999999988765332221 2332       2356788899999998865   


Q ss_pred             --CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         413 --CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       413 --t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                        +.++++.+.++.||+++++||+|.
T Consensus       242 ~~~~~li~~~~l~~mk~gg~iV~v~~  267 (369)
T 2eez_A          242 AKAPKLVTRDMLSLMKEGAVIVDVAV  267 (369)
T ss_dssp             ----CCSCHHHHTTSCTTCEEEECC-
T ss_pred             cccchhHHHHHHHhhcCCCEEEEEec
Confidence              346789999999999999999985

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=98.73  E-value=2.8e-09  Score=117.73  Aligned_cols=96  Identities=20%  Similarity=0.239  Sum_probs=71.3

Q ss_pred             hccc-ccCcEEEEEecChhHHHHHHHHHh-CCCEEEEEe-cCCccHHHHhhcCceecCHHHHhccCc---EEEEcCCCCC
Q psy7896         342 LDIM-LAGKVAVVAGYGDVGKGCAQSLRL-FGSRVIVTE-IDPINALQASMEGYEVTTMEEAAKEGG---IFVTTTGCKD  415 (718)
Q Consensus       342 ~g~e-L~GktVGIIG~G~IG~~vA~~l~~-fGa~Viv~d-~dp~~al~a~~~G~~v~~Leell~~aD---iIi~atgt~~  415 (718)
                      .|.+ |+||||+|+|+|+||+.+|+++++ |||+|+++. .+..  .    ....-.+++++++.+|   .++..+++++
T Consensus       205 ~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~--~----~~~~gvdl~~L~~~~d~~~~l~~l~~t~~  278 (419)
T 1gtm_A          205 LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGG--I----YNPDGLNADEVLKWKNEHGSVKDFPGATN  278 (419)
T ss_dssp             TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCE--E----EEEEEECHHHHHHHHHHHSSSTTCTTSEE
T ss_pred             hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCcc--c----cCccCCCHHHHHHHHHhcCEeecCccCee
Confidence            5778 999999999999999999999999 999999884 3321  0    0011236777766444   3322245777


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCCccccHHHH
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWL  446 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL  446 (718)
                       |+.+.|..||+ .+|||+||++ .+|.+++
T Consensus       279 -i~~~~l~~mk~-dilIn~ArG~-~Vde~a~  306 (419)
T 1gtm_A          279 -ITNEELLELEV-DVLAPAAIEE-VITKKNA  306 (419)
T ss_dssp             -ECHHHHHHSCC-SEEEECSCSC-CBCTTGG
T ss_pred             -eCHHHHHhCCC-CEEEECCCcc-cCCHHHH
Confidence             89999999998 5999999996 5776554

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.51  E-value=1.6e-07  Score=101.86  Aligned_cols=94  Identities=18%  Similarity=0.292  Sum_probs=76.2

Q ss_pred             cc-cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCceecCHHHHhc-cCcEEEEcCCCCCCcCH
Q psy7896         343 DI-MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEVTTMEEAAK-EGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       343 g~-eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v~~Leell~-~aDiIi~atgt~~lI~~  419 (718)
                      |. +|.||+|+|+|+|+||+.+|+.|..+|++|+++|+++.+..+. ...|....+.++++. ++||++.+. +.++|+.
T Consensus       167 G~~~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-~~~~I~~  245 (364)
T 1leh_A          167 GSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-LGAVLND  245 (364)
T ss_dssp             SSCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-CSCCBST
T ss_pred             cccCCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-hHHHhCH
Confidence            44 7999999999999999999999999999999999887543321 122556677788776 899999874 6679999


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.++.|+ ..+++|.+++.
T Consensus       246 ~~~~~lg-~~iV~e~An~p  263 (364)
T 1leh_A          246 FTIPQLK-AKVIAGSADNQ  263 (364)
T ss_dssp             THHHHCC-CSEECCSCSCC
T ss_pred             HHHHhCC-CcEEEeCCCCC
Confidence            9999995 46888988875

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.50  E-value=2.6e-07  Score=103.37  Aligned_cols=99  Identities=20%  Similarity=0.207  Sum_probs=75.0

Q ss_pred             hhhhhhcccccC-cEEEEEecChhHHHHHHHHHhC------CCEEEEEecC-CccHHHHhhcCcee-----cCHHHHhcc
Q psy7896         337 DQAKYLDIMLAG-KVAVVAGYGDVGKGCAQSLRLF------GSRVIVTEID-PINALQASMEGYEV-----TTMEEAAKE  403 (718)
Q Consensus       337 ~~~~~~g~eL~G-ktVGIIG~G~IG~~vA~~l~~f------Ga~Viv~d~d-p~~al~a~~~G~~v-----~~Leell~~  403 (718)
                      |+.......|+| |+|||||+|.+|.++|+.|+..      |.+|++.++. +.....+...|+..     .++.|++++
T Consensus        42 w~~~~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~  121 (525)
T 3fr7_A           42 NLFPLLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSG  121 (525)
T ss_dssp             GGGGGHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHH
T ss_pred             cccccChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhc
Confidence            333344577999 9999999999999999999987      9999876554 33333455678764     689999999


Q ss_pred             CcEEEEcCCC---CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         404 GGIFVTTTGC---KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       404 aDiIi~atgt---~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ||+|+++...   ..++. +.+..||+|++| -.++|
T Consensus       122 ADVVILaVP~~~~~eVl~-eI~p~LK~GaIL-s~AaG  156 (525)
T 3fr7_A          122 SDLVLLLISDAAQADNYE-KIFSHMKPNSIL-GLSHG  156 (525)
T ss_dssp             CSEEEECSCHHHHHHHHH-HHHHHSCTTCEE-EESSS
T ss_pred             CCEEEECCChHHHHHHHH-HHHHhcCCCCeE-EEeCC
Confidence            9999998653   23454 677899999996 44554

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.49  E-value=4.6e-07  Score=95.20  Aligned_cols=81  Identities=28%  Similarity=0.373  Sum_probs=71.1

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||++.|||.|+ +|+.+|+.|.+.|++|+++++..             .++++.+++||+||.+++..++|+.
T Consensus       154 ~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T-------------~~L~~~~~~ADIVI~Avg~p~~I~~  220 (286)
T 4a5o_A          154 STGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT-------------RDLADHVSRADLVVVAAGKPGLVKG  220 (286)
T ss_dssp             HTTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHHHHTCSEEEECCCCTTCBCG
T ss_pred             HhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC-------------cCHHHHhccCCEEEECCCCCCCCCH
Confidence            346789999999999987 79999999999999999996432             3688999999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.+   |+|+++|++|..
T Consensus       221 ~~v---k~GavVIDvgi~  235 (286)
T 4a5o_A          221 EWI---KEGAIVIDVGIN  235 (286)
T ss_dssp             GGS---CTTCEEEECCSC
T ss_pred             HHc---CCCeEEEEeccc
Confidence            654   999999999864

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.48  E-value=4.2e-07  Score=95.46  Aligned_cols=79  Identities=27%  Similarity=0.512  Sum_probs=70.3

Q ss_pred             hcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHH
Q psy7896         342 LDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGE  420 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e  420 (718)
                      .+.++.||++.|||.|+ +|+.+|+.|.+.|++|+++++..             .++.+.+++|||||.+++..++|+.+
T Consensus       154 ~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t-------------~~L~~~~~~ADIVI~Avg~p~~I~~~  220 (285)
T 3p2o_A          154 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT-------------KDLSLYTRQADLIIVAAGCVNLLRSD  220 (285)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SCHHHHHTTCSEEEECSSCTTCBCGG
T ss_pred             hCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHhhcCCEEEECCCCCCcCCHH
Confidence            46789999999999998 69999999999999999996532             36889999999999999999999986


Q ss_pred             HHhcCCCCeEEEEcCC
Q psy7896         421 HFLQMRDDAIVCNIGH  436 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GR  436 (718)
                      .   +|+|+++|++|.
T Consensus       221 ~---vk~GavVIDVgi  233 (285)
T 3p2o_A          221 M---VKEGVIVVDVGI  233 (285)
T ss_dssp             G---SCTTEEEEECCC
T ss_pred             H---cCCCeEEEEecc
Confidence            5   599999999986

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.45  E-value=5.1e-07  Score=94.84  Aligned_cols=79  Identities=24%  Similarity=0.352  Sum_probs=70.1

Q ss_pred             hcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHH
Q psy7896         342 LDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGE  420 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e  420 (718)
                      .+.++.||++.|||.|+ +|+.+|+.|.+.|++|+++++..             .++++.++++|+||.+++..++|+.+
T Consensus       155 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~~~~ADIVI~Avg~p~~I~~~  221 (285)
T 3l07_A          155 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT-------------TDLKSHTTKADILIVAVGKPNFITAD  221 (285)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHTTCSEEEECCCCTTCBCGG
T ss_pred             hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHhcccCCEEEECCCCCCCCCHH
Confidence            46789999999999998 69999999999999999986432             36889999999999999999999986


Q ss_pred             HHhcCCCCeEEEEcCC
Q psy7896         421 HFLQMRDDAIVCNIGH  436 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GR  436 (718)
                      .   +|+|+++|++|.
T Consensus       222 ~---vk~GavVIDvgi  234 (285)
T 3l07_A          222 M---VKEGAVVIDVGI  234 (285)
T ss_dssp             G---SCTTCEEEECCC
T ss_pred             H---cCCCcEEEEecc
Confidence            5   599999999986

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.44  E-value=4.4e-07  Score=95.40  Aligned_cols=80  Identities=25%  Similarity=0.379  Sum_probs=71.1

Q ss_pred             hcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHH
Q psy7896         342 LDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGE  420 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e  420 (718)
                      .+.++.||++.|||.|+ +|+.+|+.|.+.|++|++++...             .++.+.+++||+||.+++..++|+.+
T Consensus       153 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t-------------~~L~~~~~~ADIVI~Avg~p~lI~~~  219 (288)
T 1b0a_A          153 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHVENADLLIVAVGKPGFIPGD  219 (288)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHHHHCSEEEECSCCTTCBCTT
T ss_pred             cCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc-------------hhHHHHhccCCEEEECCCCcCcCCHH
Confidence            46789999999999997 69999999999999999996433             36889999999999999999999987


Q ss_pred             HHhcCCCCeEEEEcCCC
Q psy7896         421 HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRg  437 (718)
                      .   +|+|+++|++|.-
T Consensus       220 ~---vk~GavVIDVgi~  233 (288)
T 1b0a_A          220 W---IKEGAIVIDVGIN  233 (288)
T ss_dssp             T---SCTTCEEEECCCE
T ss_pred             H---cCCCcEEEEccCC
Confidence            6   4999999999963

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.44  E-value=3.8e-07  Score=84.92  Aligned_cols=88  Identities=17%  Similarity=0.258  Sum_probs=70.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-HhhcCce---ecCHHHHhccCcEEEEcCCCCC-CcCHHH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-ASMEGYE---VTTMEEAAKEGGIFVTTTGCKD-IIRGEH  421 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-a~~~G~~---v~~Leell~~aDiIi~atgt~~-lI~~e~  421 (718)
                      .|++|+|||.|.+|+.+++.|..+|++|+++++++.+... +...|..   ..+++++++++|+|+++++..+ +++.  
T Consensus        20 ~~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~~~~~~--   97 (144)
T 3oj0_A           20 GGNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKTPIVEE--   97 (144)
T ss_dssp             CCCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSSCSBCG--
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCCcEeeH--
Confidence            3899999999999999999999999999999998865432 2222333   3478899999999999987654 4543  


Q ss_pred             HhcCCCCeEEEEcCCC
Q psy7896         422 FLQMRDDAIVCNIGHF  437 (718)
Q Consensus       422 l~~MK~gAiLIN~GRg  437 (718)
                       +.++++.+++++|..
T Consensus        98 -~~l~~g~~vid~~~p  112 (144)
T 3oj0_A           98 -RSLMPGKLFIDLGNP  112 (144)
T ss_dssp             -GGCCTTCEEEECCSS
T ss_pred             -HHcCCCCEEEEccCC
Confidence             567899999999874

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.40  E-value=8.6e-07  Score=93.75  Aligned_cols=81  Identities=27%  Similarity=0.415  Sum_probs=71.4

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||++.|||.|+ +|+.+|+.|.+.|++|++++..             ..++.+.+++||+||.+++..++|+.
T Consensus       158 ~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~-------------t~~L~~~~~~ADIVI~Avg~p~~I~~  224 (301)
T 1a4i_A          158 ETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK-------------TAHLDEEVNKGDILVVATGQPEMVKG  224 (301)
T ss_dssp             TTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSSHHHHHTTCSEEEECCCCTTCBCG
T ss_pred             HcCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECC-------------cccHHHHhccCCEEEECCCCcccCCH
Confidence            346789999999999997 6999999999999999999643             23688999999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +.   +|+|+++|++|.-
T Consensus       225 ~~---vk~GavVIDVgi~  239 (301)
T 1a4i_A          225 EW---IKPGAIVIDCGIN  239 (301)
T ss_dssp             GG---SCTTCEEEECCCB
T ss_pred             HH---cCCCcEEEEccCC
Confidence            76   5899999999973

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.39  E-value=6.9e-07  Score=93.44  Aligned_cols=75  Identities=15%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQ  424 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~  424 (718)
                      +.||++.|||.|+ +|+.+|+.|.+.|++|+++++.             ..++.+.+++||+|+.+++..++|+++.   
T Consensus       148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~-------------t~~L~~~~~~ADIVI~Avg~p~~I~~~~---  211 (276)
T 3ngx_A          148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSK-------------TKDIGSMTRSSKIVVVAVGRPGFLNREM---  211 (276)
T ss_dssp             CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT-------------CSCHHHHHHHSSEEEECSSCTTCBCGGG---
T ss_pred             cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCC-------------cccHHHhhccCCEEEECCCCCccccHhh---
Confidence            8999999999997 7999999999999999999653             2468899999999999999999999865   


Q ss_pred             CCCCeEEEEcCC
Q psy7896         425 MRDDAIVCNIGH  436 (718)
Q Consensus       425 MK~gAiLIN~GR  436 (718)
                      +|+|+++|++|.
T Consensus       212 vk~GavVIDvgi  223 (276)
T 3ngx_A          212 VTPGSVVIDVGI  223 (276)
T ss_dssp             CCTTCEEEECCC
T ss_pred             ccCCcEEEEecc
Confidence            599999999996

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.39  E-value=7.8e-07  Score=93.26  Aligned_cols=80  Identities=23%  Similarity=0.351  Sum_probs=70.8

Q ss_pred             hcccccCcEEEEEecChh-HHHHHHHHHhC--CCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcC
Q psy7896         342 LDIMLAGKVAVVAGYGDV-GKGCAQSLRLF--GSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~I-G~~vA~~l~~f--Ga~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~  418 (718)
                      .+.++.||++.|||.|+| |+.+|+.|.+.  |++|+++++..             .++.+.++++|+||.+++..++|+
T Consensus       152 ~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t-------------~~L~~~~~~ADIVI~Avg~p~~I~  218 (281)
T 2c2x_A          152 YDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT-------------RDLPALTRQADIVVAAVGVAHLLT  218 (281)
T ss_dssp             TTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC-------------SCHHHHHTTCSEEEECSCCTTCBC
T ss_pred             cCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch-------------hHHHHHHhhCCEEEECCCCCcccC
Confidence            467899999999999985 99999999999  99999996433             368899999999999999999999


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+.   +|+|+++|++|.-
T Consensus       219 ~~~---vk~GavVIDVgi~  234 (281)
T 2c2x_A          219 ADM---VRPGAAVIDVGVS  234 (281)
T ss_dssp             GGG---SCTTCEEEECCEE
T ss_pred             HHH---cCCCcEEEEccCC
Confidence            876   4899999999964

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.39  E-value=6.8e-07  Score=94.51  Aligned_cols=79  Identities=27%  Similarity=0.397  Sum_probs=69.4

Q ss_pred             hcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHH--HHhccCcEEEEcCCCCCCcC
Q psy7896         342 LDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTME--EAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Le--ell~~aDiIi~atgt~~lI~  418 (718)
                      .+.++.||++.|||.|+ +|+.+|+.|.+.|++|+++++...             +++  +.+++|||||.+++..++|+
T Consensus       159 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~-------------~l~l~~~~~~ADIVI~Avg~p~~I~  225 (300)
T 4a26_A          159 CGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS-------------TEDMIDYLRTADIVIAAMGQPGYVK  225 (300)
T ss_dssp             HTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC-------------HHHHHHHHHTCSEEEECSCCTTCBC
T ss_pred             cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC-------------CchhhhhhccCCEEEECCCCCCCCc
Confidence            46789999999999988 699999999999999999976332             355  88999999999999999999


Q ss_pred             HHHHhcCCCCeEEEEcCC
Q psy7896         419 GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GR  436 (718)
                      .+.   +|+|+++|++|.
T Consensus       226 ~~~---vk~GavVIDvgi  240 (300)
T 4a26_A          226 GEW---IKEGAAVVDVGT  240 (300)
T ss_dssp             GGG---SCTTCEEEECCC
T ss_pred             HHh---cCCCcEEEEEec
Confidence            865   599999999986

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.35  E-value=4.1e-07  Score=97.21  Aligned_cols=91  Identities=20%  Similarity=0.264  Sum_probs=72.0

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH-HHHhhcCceecCHHHHhccCcEEEEcCCCC---CCcCHH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-LQASMEGYEVTTMEEAAKEGGIFVTTTGCK---DIIRGE  420 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a-l~a~~~G~~v~~Leell~~aDiIi~atgt~---~lI~~e  420 (718)
                      .+.+++|+|||+|.||..+|+.++..|.+|+++++++... ..+...|+.+.+++++++++|+|++++...   .++..+
T Consensus        13 ~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~~~~v~~~~   92 (338)
T 1np3_A           13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (338)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHHHHHHHHHH
Confidence            5788999999999999999999999999999999887542 234456777668999999999999987643   223323


Q ss_pred             HHhcCCCCeEEEEcC
Q psy7896         421 HFLQMRDDAIVCNIG  435 (718)
Q Consensus       421 ~l~~MK~gAiLIN~G  435 (718)
                      ....|+++++|+.++
T Consensus        93 i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           93 IEPNLKKGATLAFAH  107 (338)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             HHhhCCCCCEEEEcC
Confidence            345689999999874

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=98.33  E-value=1.2e-06  Score=92.13  Aligned_cols=96  Identities=16%  Similarity=0.071  Sum_probs=74.5

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----Cc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----II  417 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI  417 (718)
                      .....-++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++.+|+|+++..+..    ++
T Consensus        16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~   95 (310)
T 3doj_A           16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV   95 (310)
T ss_dssp             --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred             cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence            3445568999999999999999999999999999999987655444556654 579999999999999865431    22


Q ss_pred             --CHHHHhcCCCCeEEEEcCCCC
Q psy7896         418 --RGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       418 --~~e~l~~MK~gAiLIN~GRgd  438 (718)
                        ..+.+..++++.++||++...
T Consensus        96 ~~~~~l~~~l~~g~~vv~~st~~  118 (310)
T 3doj_A           96 FDKGGVLEQICEGKGYIDMSTVD  118 (310)
T ss_dssp             HSTTCGGGGCCTTCEEEECSCCC
T ss_pred             hCchhhhhccCCCCEEEECCCCC
Confidence              123346789999999999754

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.32  E-value=6.6e-07  Score=95.53  Aligned_cols=93  Identities=16%  Similarity=0.231  Sum_probs=73.1

Q ss_pred             hcccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHH---Hhhc-Ccee--------cCHHHHhccCcEEE
Q psy7896         342 LDIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQ---ASME-GYEV--------TTMEEAAKEGGIFV  408 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~---a~~~-G~~v--------~~Leell~~aDiIi  408 (718)
                      .+.++.|+++.|||.|++ |+.+|+.|.+.|++|++++++..+...   .... -...        .++++.++++|+||
T Consensus       171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI  250 (320)
T 1edz_A          171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  250 (320)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence            356899999999999975 999999999999999999876432110   0000 0111        46889999999999


Q ss_pred             EcCCCCCC-cCHHHHhcCCCCeEEEEcCCC
Q psy7896         409 TTTGCKDI-IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       409 ~atgt~~l-I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++++..++ |+.+.   +|+|+++|++|..
T Consensus       251 sAtg~p~~vI~~e~---vk~GavVIDVgi~  277 (320)
T 1edz_A          251 TGVPSENYKFPTEY---IKEGAVCINFACT  277 (320)
T ss_dssp             ECCCCTTCCBCTTT---SCTTEEEEECSSS
T ss_pred             ECCCCCcceeCHHH---cCCCeEEEEcCCC
Confidence            99998887 88766   4999999999985

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.32  E-value=1.2e-06  Score=94.49  Aligned_cols=93  Identities=16%  Similarity=0.145  Sum_probs=73.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-e-------ecCHHHHhccCcEEEEcCCC---
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-E-------VTTMEEAAKEGGIFVTTTGC---  413 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~-------v~~Leell~~aDiIi~atgt---  413 (718)
                      .+++++|+|+|.|.+|+.+++.|+.+|++|+++|+++.+...+...+. .       ..++.+.++.+|+|+.+++.   
T Consensus       164 ~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~  243 (361)
T 1pjc_A          164 GVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGR  243 (361)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCC
Confidence            377899999999999999999999999999999998865433322211 1       12456777899999988754   


Q ss_pred             --CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 --KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 --~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                        ..++..+.++.||++++++|++..
T Consensus       244 ~~~~li~~~~~~~~~~g~~ivdv~~~  269 (361)
T 1pjc_A          244 RAPILVPASLVEQMRTGSVIVDVAVD  269 (361)
T ss_dssp             SCCCCBCHHHHTTSCTTCEEEETTCT
T ss_pred             CCCeecCHHHHhhCCCCCEEEEEecC
Confidence              245788899999999999999863

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.31  E-value=1.1e-06  Score=96.04  Aligned_cols=92  Identities=24%  Similarity=0.296  Sum_probs=73.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHH-HHhhcCcee---cCHHHHhccCcEEEEcCC-CCCCcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINAL-QASMEGYEV---TTMEEAAKEGGIFVTTTG-CKDIIR  418 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al-~a~~~G~~v---~~Leell~~aDiIi~atg-t~~lI~  418 (718)
                      ++.|++|+|||+|.||+.+++.++.+|+ +|+++++++.+.. .+...|..+   .+++++++.+|+|+.+++ +..+++
T Consensus       164 ~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~~~~~  243 (404)
T 1gpj_A          164 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIH  243 (404)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBC
T ss_pred             cccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCCceec
Confidence            5789999999999999999999999999 9999998876532 222234433   367788899999999876 456788


Q ss_pred             HHHHhc--C----CCCeEEEEcCC
Q psy7896         419 GEHFLQ--M----RDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~--M----K~gAiLIN~GR  436 (718)
                      .+.++.  |    +++.+++|++.
T Consensus       244 ~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          244 VDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             HHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             HHHHHHHHHhccCCCCEEEEEccC
Confidence            888887  4    36789999986

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=98.31  E-value=5e-07  Score=94.88  Aligned_cols=95  Identities=15%  Similarity=0.056  Sum_probs=74.9

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCcC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DIIR  418 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI~  418 (718)
                      .++..++|||||+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++++|+|+++..+.    .++.
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~   84 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG   84 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred             cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence            345678999999999999999999999999999999886554444446554 57999999999999986542    2343


Q ss_pred             HHHHhcCCCCeEEEEcCCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .+.+..++++.++||++...
T Consensus        85 ~~~l~~~~~g~ivid~st~~  104 (306)
T 3l6d_A           85 MPGVARALAHRTIVDYTTNA  104 (306)
T ss_dssp             STTHHHHTTTCEEEECCCCC
T ss_pred             ccchhhccCCCEEEECCCCC
Confidence            22456678999999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=98.29  E-value=1.6e-06  Score=89.80  Aligned_cols=90  Identities=16%  Similarity=0.133  Sum_probs=72.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCc--CHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DII--RGEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI--~~e~  421 (718)
                      ++|+|||+|.+|..+|+.+...|.+|+++|+++.+.......|... .+++++++++|+|+++..+.    .++  ..+.
T Consensus         2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l   81 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV   81 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence            6899999999999999999999999999999987655444456654 47999999999999987642    122  1233


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      ...++++.++||++...
T Consensus        82 ~~~l~~~~~vi~~st~~   98 (287)
T 3pef_A           82 LEGIGEGRGYVDMSTVD   98 (287)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhcCCCCCEEEeCCCCC
Confidence            46789999999998754

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=98.28  E-value=1.2e-06  Score=92.45  Aligned_cols=93  Identities=16%  Similarity=0.184  Sum_probs=74.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----CcCH-
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----IIRG-  419 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI~~-  419 (718)
                      ...++|+|||+|.+|..+|+.+...|.+|+++|+++.+.......|... .+++++++++|+|+++..+..    ++.. 
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~  108 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ  108 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT
T ss_pred             cCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch
Confidence            4567999999999999999999999999999999887654444456654 589999999999999866421    2221 


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.++.++++.++||++...
T Consensus       109 ~~~~~l~~~~~vi~~st~~  127 (320)
T 4dll_A          109 GVAAAMKPGSLFLDMASIT  127 (320)
T ss_dssp             CHHHHCCTTCEEEECSCCC
T ss_pred             hHHhhCCCCCEEEecCCCC
Confidence            3456789999999999864

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=98.26  E-value=1e-06  Score=89.54  Aligned_cols=101  Identities=19%  Similarity=0.219  Sum_probs=66.3

Q ss_pred             hhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc--------------HHHHh-h-cCceecCHHH
Q psy7896         336 EDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN--------------ALQAS-M-EGYEVTTMEE  399 (718)
Q Consensus       336 ~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~--------------al~a~-~-~G~~v~~Lee  399 (718)
                      +++.+....++.+++|||||+|++|..+|+.|...|.+|+++++++.+              ..... . .+....+..+
T Consensus         7 ~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e   86 (245)
T 3dtt_A            7 HHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFAD   86 (245)
T ss_dssp             ------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHH
T ss_pred             cccccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHH
Confidence            344556678899999999999999999999999999999999998765              11111 1 2345668899


Q ss_pred             HhccCcEEEEcCCCCCCcCH-HHH--hcCCCCeEEEEcCCC
Q psy7896         400 AAKEGGIFVTTTGCKDIIRG-EHF--LQMRDDAIVCNIGHF  437 (718)
Q Consensus       400 ll~~aDiIi~atgt~~lI~~-e~l--~~MK~gAiLIN~GRg  437 (718)
                      +++++|+|+++.....+... ..+  ..+ ++.++|+++-+
T Consensus        87 ~~~~aDvVilavp~~~~~~~~~~i~~~~l-~g~ivi~~s~~  126 (245)
T 3dtt_A           87 VAAGAELVVNATEGASSIAALTAAGAENL-AGKILVDIANP  126 (245)
T ss_dssp             HHHHCSEEEECSCGGGHHHHHHHHCHHHH-TTSEEEECCCC
T ss_pred             HHhcCCEEEEccCcHHHHHHHHHhhhhhc-CCCEEEECCCC
Confidence            99999999998765433210 112  223 78999999843

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=98.23  E-value=1.3e-06  Score=90.40  Aligned_cols=90  Identities=14%  Similarity=0.086  Sum_probs=71.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----Cc-C-HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----II-R-GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI-~-~e~  421 (718)
                      ++|+|||+|.+|..+|+.+...|.+|+++|+++.+.......|... .+++++++++|+|+++..+..    ++ . .+.
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l   81 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV   81 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence            4799999999999999999999999999999987654444456654 479999999999999866531    22 1 233


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..++++.++||++...
T Consensus        82 ~~~l~~g~~vv~~st~~   98 (287)
T 3pdu_A           82 LEGIGGGRGYIDMSTVD   98 (287)
T ss_dssp             GGTCCTTCEEEECSCCC
T ss_pred             hhcccCCCEEEECCCCC
Confidence            46789999999999864

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.20  E-value=3.3e-06  Score=86.56  Aligned_cols=91  Identities=25%  Similarity=0.293  Sum_probs=70.3

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCceecCHHHHhccCcEEEEcCCCC------C
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEVTTMEEAAKEGGIFVTTTGCK------D  415 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v~~Leell~~aDiIi~atgt~------~  415 (718)
                      +.+++| +++|||.|.+|+.+++.+..+|++|+++++++.+.... ...|....+++++ +++|+|+++++..      .
T Consensus       112 ~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~~~~~~~~-~~~Divi~~tp~~~~~~~~~  189 (263)
T 2d5c_A          112 GIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLRAVPLEKA-REARLLVNATRVGLEDPSAS  189 (263)
T ss_dssp             TCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCEECCGGGG-GGCSEEEECSSTTTTCTTCC
T ss_pred             CCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccchhhHhhc-cCCCEEEEccCCCCCCCCCC
Confidence            457889 99999999999999999999999999999887543221 1223345578888 9999999987643      2


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .+.   .+.++++.++++++...
T Consensus       190 ~l~---~~~l~~g~~viD~~~~p  209 (263)
T 2d5c_A          190 PLP---AELFPEEGAAVDLVYRP  209 (263)
T ss_dssp             SSC---GGGSCSSSEEEESCCSS
T ss_pred             CCC---HHHcCCCCEEEEeecCC
Confidence            343   46789999999998754

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=98.20  E-value=1.6e-06  Score=90.58  Aligned_cols=91  Identities=16%  Similarity=0.118  Sum_probs=71.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce--ecCHHHHhccCcEEEEcCCCCC----CcC--H
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE--VTTMEEAAKEGGIFVTTTGCKD----IIR--G  419 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~--v~~Leell~~aDiIi~atgt~~----lI~--~  419 (718)
                      .++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|..  ..+++++++.+|+|+++..+..    ++.  .
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~   86 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED   86 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence            4689999999999999999999999999999988765444445654  4678999999999999866531    221  2


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +....++++.++||++...
T Consensus        87 ~l~~~l~~g~ivv~~st~~  105 (303)
T 3g0o_A           87 GVAHLMKPGSAVMVSSTIS  105 (303)
T ss_dssp             CCGGGSCTTCEEEECSCCC
T ss_pred             hHHhhCCCCCEEEecCCCC
Confidence            2346789999999999864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=97.50  E-value=1.9e-07  Score=92.84  Aligned_cols=89  Identities=18%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCC---CCcCHHHH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCK---DIIRGEHF  422 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~---~lI~~e~l  422 (718)
                      +.+++|+|||+|++|+.+|+.+...|.+|+++++++. .......|....+.+++++.+|+|++++...   .++   .+
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~aDvVilav~~~~~~~v~---~l   92 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVLCYSEAASRSDVIVLAVHREHYDFLA---EL   92 (201)
Confidence            6788999999999999999999999999999988765 2222224555557888999999999875432   333   24


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      ..++++.++||++.+.
T Consensus        93 ~~~~~~~ivI~~~~G~  108 (201)
T 2yjz_A           93 ADSLKGRVLIDVSNNQ  108 (201)
Confidence            5577899999999974

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.18  E-value=3.5e-06  Score=87.30  Aligned_cols=91  Identities=21%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCceec-CHHHHhccCcEEEEcCCCC------
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEVT-TMEEAAKEGGIFVTTTGCK------  414 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v~-~Leell~~aDiIi~atgt~------  414 (718)
                      +.++.|++|+|||.|.+|+.+++.|...|++|+++++++.+..+.. ..|..+. +++++++++|+|+.+++..      
T Consensus       124 ~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~  203 (275)
T 2hk9_A          124 IPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLKDEDP  203 (275)
T ss_dssp             CTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSSTTCC
T ss_pred             CCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCCCCCC
Confidence            4567899999999999999999999999999999998875543222 2244444 6888899999999986542      


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      ..++   ++.++++.++++++.
T Consensus       204 ~~i~---~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          204 EIFN---YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             CSSC---GGGCCTTSEEEESSS
T ss_pred             CCCC---HHHcCCCCEEEEcCC
Confidence            1333   456899999999887

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=98.18  E-value=2.4e-06  Score=89.23  Aligned_cols=89  Identities=13%  Similarity=0.159  Sum_probs=72.4

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCcCHHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DIIRGEHF  422 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI~~e~l  422 (718)
                      .++|+|||+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++ +|+|+++..+.    .++ .+..
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~   92 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA   92 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence            36899999999999999999999999999999987654444556655 47999999 99999987643    233 4556


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      ..++++.++||++...
T Consensus        93 ~~l~~g~ivv~~st~~  108 (296)
T 3qha_A           93 GHAKPGTVIAIHSTIS  108 (296)
T ss_dssp             TTCCTTCEEEECSCCC
T ss_pred             HhcCCCCEEEEeCCCC
Confidence            7799999999998864

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.17  E-value=2e-06  Score=85.74  Aligned_cols=89  Identities=17%  Similarity=0.169  Sum_probs=68.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC---CcCHHHHh
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD---IIRGEHFL  423 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~---lI~~e~l~  423 (718)
                      .+++|+|||+|.+|+.+++.+...|.+|+++++++.+.......|....+++++++++|+|++++....   ++.   +.
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~~~~~~v~~---l~  103 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFREHYSSLCS---LS  103 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCGGGSGGGGG---GH
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCChHHHHHHHH---HH
Confidence            457899999999999999999999999999998876543333446666688899999999999876432   221   33


Q ss_pred             cCCCCeEEEEcCCCC
Q psy7896         424 QMRDDAIVCNIGHFD  438 (718)
Q Consensus       424 ~MK~gAiLIN~GRgd  438 (718)
                      .+.++.++++++.+.
T Consensus       104 ~~~~~~~vv~~s~g~  118 (215)
T 2vns_A          104 DQLAGKILVDVSNPT  118 (215)
T ss_dssp             HHHTTCEEEECCCCC
T ss_pred             HhcCCCEEEEeCCCc
Confidence            334789999999874

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.17  E-value=2.8e-06  Score=89.93  Aligned_cols=93  Identities=22%  Similarity=0.290  Sum_probs=72.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCc--e-ecCHHH-HhccCcEEEEcCCCCCC--c
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGY--E-VTTMEE-AAKEGGIFVTTTGCKDI--I  417 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~--~-v~~Lee-ll~~aDiIi~atgt~~l--I  417 (718)
                      +.-++|+|||+|.||..+|+.++..|.  +|+++|+++.....+...|.  . ..++++ +++++|+|++++....+  +
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v  110 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREI  110 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGGGHHHH
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHHHHHHH
Confidence            345899999999999999999999999  99999998865544445565  2 357888 89999999998664322  1


Q ss_pred             CHHHHhcCCCCeEEEEcCCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      -.+....+++++++++++...
T Consensus       111 l~~l~~~l~~~~iv~d~~Svk  131 (314)
T 3ggo_A          111 AKKLSYILSEDATVTDQGSVK  131 (314)
T ss_dssp             HHHHHHHSCTTCEEEECCSCC
T ss_pred             HHHHhhccCCCcEEEECCCCc
Confidence            133445689999999998764

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=98.15  E-value=3.8e-06  Score=90.76  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=73.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccC---cEEEEcCCCCC---Cc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEG---GIFVTTTGCKD---II  417 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~a---DiIi~atgt~~---lI  417 (718)
                      .+.+++|||||+|.+|..+|+.|...|.+|+++|+++.+.......|... .+++++++.+   |+|+++..+..   ++
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~~v~~vl   98 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSML   98 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGGGHHHHH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHHHHHHHH
Confidence            45789999999999999999999999999999999887654444456554 4799999999   99999866542   12


Q ss_pred             CHHHHhcCCCCeEEEEcCCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd  438 (718)
                       .+.+..++++.++|+++...
T Consensus        99 -~~l~~~l~~g~iiId~st~~  118 (358)
T 4e21_A           99 -QRMTPLLAANDIVIDGGNSH  118 (358)
T ss_dssp             -HHHGGGCCTTCEEEECSSCC
T ss_pred             -HHHHhhCCCCCEEEeCCCCC
Confidence             34456789999999999875

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=98.15  E-value=3.1e-06  Score=89.52  Aligned_cols=89  Identities=10%  Similarity=0.099  Sum_probs=69.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCc-------cHHHHhhcCceec-CHHHHhccCcEEEEcCCCCCCcC-
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPI-------NALQASMEGYEVT-TMEEAAKEGGIFVTTTGCKDIIR-  418 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~-------~al~a~~~G~~v~-~Leell~~aDiIi~atgt~~lI~-  418 (718)
                      ++|||||+|.+|..+|+.|...| .+|+++|+++.       ........|. .. +++++++++|+|+++..+..... 
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~~e~~~~aDvVi~avp~~~~~~~  103 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDDVAGIACADVVLSLVVGAATKAV  103 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESSGGGGGGCSEEEECCCGGGHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCHHHHHhcCCEEEEecCCHHHHHH
Confidence            68999999999999999999999 99999998872       2222223466 66 88999999999999866533211 


Q ss_pred             -HHHHhcCCCCeEEEEcCCCC
Q psy7896         419 -GEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       419 -~e~l~~MK~gAiLIN~GRgd  438 (718)
                       .+....++++.++||++...
T Consensus       104 ~~~i~~~l~~~~ivv~~st~~  124 (317)
T 4ezb_A          104 AASAAPHLSDEAVFIDLNSVG  124 (317)
T ss_dssp             HHHHGGGCCTTCEEEECCSCC
T ss_pred             HHHHHhhcCCCCEEEECCCCC
Confidence             34456789999999998753

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.14  E-value=2.7e-06  Score=87.34  Aligned_cols=89  Identities=20%  Similarity=0.299  Sum_probs=68.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCce---ecCHHHHhc-cCcEEEEcCCCCC---CcCH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGYE---VTTMEEAAK-EGGIFVTTTGCKD---IIRG  419 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~~---v~~Leell~-~aDiIi~atgt~~---lI~~  419 (718)
                      ++|+|||+|.+|..+|+.++..|.  +|+++|+++.+...+...|..   ..+++++++ .+|+|++++....   ++. 
T Consensus         2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~~-   80 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIAK-   80 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHHH-
T ss_pred             cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHHHHHHHHH-
Confidence            589999999999999999999998  999999887654334345653   346888999 9999999876432   222 


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +....|++++++++++...
T Consensus        81 ~l~~~l~~~~iv~~~~~~~   99 (281)
T 2g5c_A           81 KLSYILSEDATVTDQGSVK   99 (281)
T ss_dssp             HHHHHSCTTCEEEECCSCC
T ss_pred             HHHhhCCCCcEEEECCCCc
Confidence            3345689999999998764

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.11  E-value=1.4e-05  Score=87.28  Aligned_cols=106  Identities=16%  Similarity=0.214  Sum_probs=85.5

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecC----CccH------H-H--HhhcC-c-eecCHHHHhccCc
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEID----PINA------L-Q--ASMEG-Y-EVTTMEEAAKEGG  405 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~d----p~~a------l-~--a~~~G-~-~v~~Leell~~aD  405 (718)
                      .|..+...+|.|+|.|..|..+|+.+.++|+ +|+++|++    ..+.      . +  +.... . ...+|+|+++.+|
T Consensus       186 ~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~AD  265 (388)
T 1vl6_A          186 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD  265 (388)
T ss_dssp             HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred             hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCC
Confidence            4668899999999999999999999999999 89999987    3221      1 1  11111 1 2457999999999


Q ss_pred             EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +|+.+++ .++|+++.++.|+++.+++.+++-..|+..+...+
T Consensus       266 VlIG~Sa-p~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~  307 (388)
T 1vl6_A          266 FFIGVSR-GNILKPEWIKKMSRKPVIFALANPVPEIDPELARE  307 (388)
T ss_dssp             EEEECSC-SSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHH
T ss_pred             EEEEeCC-CCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHH
Confidence            9999887 69999999999999999999999777888765444

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=98.11  E-value=2.3e-06  Score=89.94  Aligned_cols=90  Identities=18%  Similarity=0.231  Sum_probs=68.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCcCHHHHh
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DIIRGEHFL  423 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI~~e~l~  423 (718)
                      ++||+||+|++|..+|+.|..-|.+|++||+++.+.......|... .++.|+++.+|+|+++..+.    .++..+.+.
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~   85 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE   85 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred             CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence            5799999999999999999999999999999887654444456654 47899999999999985542    345666788


Q ss_pred             cCCCCeEEEEcCCCC
Q psy7896         424 QMRDDAIVCNIGHFD  438 (718)
Q Consensus       424 ~MK~gAiLIN~GRgd  438 (718)
                      .++++.++|+++-.+
T Consensus        86 ~~~~~~iiid~sT~~  100 (297)
T 4gbj_A           86 KLGKDGVHVSMSTIS  100 (297)
T ss_dssp             HHCTTCEEEECSCCC
T ss_pred             hcCCCeEEEECCCCC
Confidence            999999999998754

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=98.08  E-value=4.7e-05  Score=78.92  Aligned_cols=88  Identities=16%  Similarity=0.076  Sum_probs=66.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-----------C---------------ceecCHHHHhc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-----------G---------------YEVTTMEEAAK  402 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-----------G---------------~~v~~Leell~  402 (718)
                      ++|+|||.|.+|..+|+.+...|.+|+++|+++.....+...           |               ....+++++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~   84 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK   84 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence            689999999999999999999999999999887643222111           1               22457889999


Q ss_pred             cCcEEEEcCCCC----CCcCHHHHhcCCCCeEEE-EcCC
Q psy7896         403 EGGIFVTTTGCK----DIIRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       403 ~aDiIi~atgt~----~lI~~e~l~~MK~gAiLI-N~GR  436 (718)
                      ++|+|+.+....    ..+-.+....++++++++ |++.
T Consensus        85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~  123 (283)
T 4e12_A           85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST  123 (283)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC
Confidence            999999986532    223345556789999999 4544

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=98.08  E-value=5.5e-06  Score=87.34  Aligned_cols=90  Identities=12%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----CcC--HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----IIR--GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI~--~e~  421 (718)
                      |+||+||+|++|..+|++|..-|.+|++||++|.+.......|... .++.|+++.+|+|+++-.+..    ++.  ...
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~   83 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   83 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred             CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence            5899999999999999999999999999999987655545566654 579999999999999744322    111  113


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      ++.+++|.++|+++-.+
T Consensus        84 ~~~~~~g~iiId~sT~~  100 (300)
T 3obb_A           84 LAHIAPGTLVLECSTIA  100 (300)
T ss_dssp             TTSCCC-CEEEECSCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            56789999999998864

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.07  E-value=2.8e-05  Score=81.25  Aligned_cols=78  Identities=14%  Similarity=0.223  Sum_probs=62.6

Q ss_pred             CcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC---CcCHHHHh
Q psy7896         348 GKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD---IIRGEHFL  423 (718)
Q Consensus       348 GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~---lI~~e~l~  423 (718)
                      .++|+||| +|.||..+|+.++..|.+|+++++++..            +.+++++.+|+|+++.....   ++ .+...
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~~------------~~~~~~~~aDvVilavp~~~~~~vl-~~l~~   87 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA------------VAESILANADVVIVSVPINLTLETI-ERLKP   87 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG------------GHHHHHTTCSEEEECSCGGGHHHHH-HHHGG
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCccc------------CHHHHhcCCCEEEEeCCHHHHHHHH-HHHHh
Confidence            57899999 9999999999999999999999877632            46678899999999866533   22 22334


Q ss_pred             cCCCCeEEEEcCCCC
Q psy7896         424 QMRDDAIVCNIGHFD  438 (718)
Q Consensus       424 ~MK~gAiLIN~GRgd  438 (718)
                      .+++++++++++...
T Consensus        88 ~l~~~~iv~~~~svk  102 (298)
T 2pv7_A           88 YLTENMLLADLTSVK  102 (298)
T ss_dssp             GCCTTSEEEECCSCC
T ss_pred             hcCCCcEEEECCCCC
Confidence            689999999998754

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=98.06  E-value=9.4e-06  Score=85.51  Aligned_cols=92  Identities=13%  Similarity=0.172  Sum_probs=70.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC--ccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCCCcC--HH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP--INALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKDIIR--GE  420 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp--~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~lI~--~e  420 (718)
                      .-++|+|||+|.+|..+|+.|...|. +|+++|+++  .........|... .++.++++++|+|+++..+.....  .+
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~~~~  102 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVAQQ  102 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHHHHHH
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHHHHHh
Confidence            45799999999999999999999999 999999874  3333333456654 478999999999999866543321  34


Q ss_pred             HHhcCCCCeEEEEcCCCC
Q psy7896         421 HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRgd  438 (718)
                      ....++++.++||++...
T Consensus       103 l~~~l~~~~ivvd~st~~  120 (312)
T 3qsg_A          103 AGPHLCEGALYADFTSCS  120 (312)
T ss_dssp             HGGGCCTTCEEEECCCCC
T ss_pred             hHhhcCCCCEEEEcCCCC
Confidence            456789999999998754

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.04  E-value=6.1e-06  Score=85.21  Aligned_cols=90  Identities=14%  Similarity=0.206  Sum_probs=70.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCC----CcC--HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKD----IIR--GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~----lI~--~e~  421 (718)
                      ++|+|||+|.+|..+++.+...|.+|.++|+++.+.......|... .+++++++.+|+|++++.+..    ++.  .+.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l   85 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   85 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence            4899999999999999999999999999998876544333446654 478899999999999876422    221  123


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      ...++++.+++|++.+.
T Consensus        86 ~~~l~~~~~vv~~s~~~  102 (299)
T 1vpd_A           86 IEGAKPGTVLIDMSSIA  102 (299)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            46789999999998874

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.03  E-value=7.6e-06  Score=84.39  Aligned_cols=90  Identities=16%  Similarity=0.261  Sum_probs=68.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCcCH--HH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DIIRG--EH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI~~--e~  421 (718)
                      ++|+|||+|.+|..+|+.+...|.+|+++|+++.+.......|..+ .+++++++.+|+|++++...    .++..  ..
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~   80 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI   80 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred             CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence            3799999999999999999999999999999886544444456654 47889999999999986432    12211  12


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..++++.++|+++..+
T Consensus        81 ~~~l~~~~~vv~~s~~~   97 (296)
T 2gf2_A           81 LKKVKKGSLLIDSSTID   97 (296)
T ss_dssp             GGTCCTTCEEEECSCCC
T ss_pred             HhcCCCCCEEEECCCCC
Confidence            34678999999976643

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.03  E-value=2.9e-06  Score=86.50  Aligned_cols=96  Identities=16%  Similarity=0.142  Sum_probs=70.2

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhc-Ccee-cCHHHHhccCcEEEEcCCCCCC--c
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASME-GYEV-TTMEEAAKEGGIFVTTTGCKDI--I  417 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~-G~~v-~~Leell~~aDiIi~atgt~~l--I  417 (718)
                      ..++.+++|+|||+|++|+.+|+.+...|.+ |.++|+++.+....... |..+ .+++++++++|+|++++....+  +
T Consensus         5 ~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~~~~~v   84 (266)
T 3d1l_A            5 KRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDSAFAEL   84 (266)
T ss_dssp             --CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHHHHHHH
T ss_pred             hcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHHHHHHH
Confidence            3456678999999999999999999988998 89999887654332222 5543 4788889999999998765422  1


Q ss_pred             CHHHHhcCCCCeEEEEcCCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      -.+....++++.++++++.+.
T Consensus        85 ~~~l~~~~~~~~ivv~~s~~~  105 (266)
T 3d1l_A           85 LQGIVEGKREEALMVHTAGSI  105 (266)
T ss_dssp             HHHHHTTCCTTCEEEECCTTS
T ss_pred             HHHHHhhcCCCcEEEECCCCC
Confidence            112234578999999998864

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.03  E-value=4.7e-06  Score=85.43  Aligned_cols=89  Identities=15%  Similarity=0.050  Sum_probs=66.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcC---HHHHhcC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIR---GEHFLQM  425 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~---~e~l~~M  425 (718)
                      ++|+|||+|.+|..+|+.+.. |.+|+++++++.+.......|....+++++++.+|+|++++.+...+.   .+....+
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~~~l~~~l   80 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYL   80 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTC
T ss_pred             CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHHHHHHhhC
Confidence            479999999999999999999 999999998886543333335444446788899999999877542111   2233568


Q ss_pred             CCCeEEEEcCCCC
Q psy7896         426 RDDAIVCNIGHFD  438 (718)
Q Consensus       426 K~gAiLIN~GRgd  438 (718)
                      +++.++++++...
T Consensus        81 ~~~~~vv~~s~~~   93 (289)
T 2cvz_A           81 REGTYWVDATSGE   93 (289)
T ss_dssp             CTTEEEEECSCCC
T ss_pred             CCCCEEEECCCCC
Confidence            9999999998764

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=98.01  E-value=1.6e-05  Score=84.06  Aligned_cols=80  Identities=28%  Similarity=0.388  Sum_probs=70.7

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||++.|||-++ +|+.+|.+|...||.|+++....             .++.+.+++|||++.+.|..++|+.
T Consensus       172 ~~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T-------------~dl~~~~~~ADIvV~A~G~p~~i~~  238 (303)
T 4b4u_A          172 ENNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT-------------QNLPELVKQADIIVGAVGKAELIQK  238 (303)
T ss_dssp             HTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHHTCSEEEECSCSTTCBCG
T ss_pred             HHCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC-------------CCHHHHhhcCCeEEeccCCCCcccc
Confidence            457889999999999998 59999999999999999986432             3688999999999999999999998


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +   ..|+|+++||+|-
T Consensus       239 d---~vk~GavVIDVGi  252 (303)
T 4b4u_A          239 D---WIKQGAVVVDAGF  252 (303)
T ss_dssp             G---GSCTTCEEEECCC
T ss_pred             c---cccCCCEEEEece
Confidence            5   4699999999985

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=97.98  E-value=1.1e-05  Score=83.50  Aligned_cols=90  Identities=16%  Similarity=0.214  Sum_probs=69.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCC----CCcC--HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCK----DIIR--GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~----~lI~--~e~  421 (718)
                      ++|+|||+|.+|+.+++.+...|.+|+++|+++.+.......|... .+++++++.+|+|++++...    .++.  .+.
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   84 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV   84 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence            6899999999999999999999999999998876543333346654 47889999999999987532    2232  133


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      ...++++.++++++.+.
T Consensus        85 ~~~l~~~~~vv~~~~~~  101 (301)
T 3cky_A           85 LSACKAGTVIVDMSSVS  101 (301)
T ss_dssp             HHHSCTTCEEEECCCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            45689999999998864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=97.98  E-value=1.3e-05  Score=83.90  Aligned_cols=90  Identities=19%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCCC----cCH--HH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKDI----IRG--EH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~l----I~~--e~  421 (718)
                      ++|+|||+|.+|+.+|+.+...|.+|+++|+++.+.......|..+ .+.+++++++|+|++++.+...    +..  ..
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~  110 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV  110 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence            6899999999999999999999999999998876544333456554 4788999999999998774221    111  12


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      ++.++++.++++++...
T Consensus       111 ~~~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A          111 LQGIRPGKCYVDMSTVD  127 (316)
T ss_dssp             GGGCCTTCEEEECSCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            35688999999998764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=97.95  E-value=1.1e-05  Score=82.62  Aligned_cols=88  Identities=17%  Similarity=0.132  Sum_probs=66.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---ecCHHHHhccCcEEEEcCCCCC---CcCHHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---VTTMEEAAKEGGIFVTTTGCKD---IIRGEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---v~~Leell~~aDiIi~atgt~~---lI~~e~l  422 (718)
                      ++|+|||+|++|..+|+.+...|.+|+++++++.+.......|..   ..+++++ +++|+|++++....   ++ .+..
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~~~~~~~~-~~l~   78 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPIQLILPTL-EKLI   78 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCHHHHHHHH-HHHG
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCHHHHHHHH-HHHH
Confidence            479999999999999999999999999999887654333344542   4578888 99999999876532   22 2333


Q ss_pred             hcCCCCeEEEEcCCCC
Q psy7896         423 LQMRDDAIVCNIGHFD  438 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd  438 (718)
                      ..+++++++++++...
T Consensus        79 ~~~~~~~~vv~~~~~~   94 (279)
T 2f1k_A           79 PHLSPTAIVTDVASVK   94 (279)
T ss_dssp             GGSCTTCEEEECCSCC
T ss_pred             hhCCCCCEEEECCCCc
Confidence            5688999999997654

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=97.94  E-value=1.3e-05  Score=82.55  Aligned_cols=89  Identities=16%  Similarity=0.071  Sum_probs=67.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----CcCH--HH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----IIRG--EH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI~~--e~  421 (718)
                      ++|+|||+|.+|+.+|+.+...|.+|++++ ++.+.......|.. ..+++++++++|+|++++....    ++..  +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l   82 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC   82 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence            589999999999999999999999999999 87654433334654 3578899999999999875432    1110  12


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      ...++++.++++++.+.
T Consensus        83 ~~~l~~~~~vv~~s~~~   99 (295)
T 1yb4_A           83 AKTSLQGKTIVDMSSIS   99 (295)
T ss_dssp             TTSCCTTEEEEECSCCC
T ss_pred             hhcCCCCCEEEECCCCC
Confidence            24688999999998864

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=97.93  E-value=7e-06  Score=84.85  Aligned_cols=88  Identities=16%  Similarity=0.159  Sum_probs=67.8

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC---CcCHHHHhc
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD---IIRGEHFLQ  424 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~---lI~~e~l~~  424 (718)
                      ++|+|||+ |++|..+|+.+...|.+|+++++++.........|....+..++++.+|+|+++.....   ++ .+....
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~~~~v~-~~l~~~   90 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNIIEKVA-EDIVPR   90 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHHHHHHH-HHHGGG
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchHHHHHH-HHHHHh
Confidence            58999999 99999999999999999999998875543333356555577788999999999876432   22 222345


Q ss_pred             CCCCeEEEEcCCC
Q psy7896         425 MRDDAIVCNIGHF  437 (718)
Q Consensus       425 MK~gAiLIN~GRg  437 (718)
                      ++++.++++++.+
T Consensus        91 l~~~~ivv~~s~~  103 (286)
T 3c24_A           91 VRPGTIVLILDAA  103 (286)
T ss_dssp             SCTTCEEEESCSH
T ss_pred             CCCCCEEEECCCC
Confidence            7899999998775

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=97.92  E-value=5.7e-06  Score=88.96  Aligned_cols=89  Identities=12%  Similarity=0.188  Sum_probs=69.4

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhcc----CcEEEEcCCCC---CCcCH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKE----GGIFVTTTGCK---DIIRG  419 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~----aDiIi~atgt~---~lI~~  419 (718)
                      -++|+|||+|.||..+|+.++..|.+|+++|+++.....+...|.. ..++++++++    +|+|+++....   .++  
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~~~~~~vl--   85 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPMTAIDSLL--   85 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCHHHHHHHH--
T ss_pred             CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCHHHHHHHH--
Confidence            3689999999999999999999999999999988655455556764 3578888764    69999987642   222  


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.+..+++++++++++...
T Consensus        86 ~~l~~~~~~~iv~Dv~Svk  104 (341)
T 3ktd_A           86 DAVHTHAPNNGFTDVVSVK  104 (341)
T ss_dssp             HHHHHHCTTCCEEECCSCS
T ss_pred             HHHHccCCCCEEEEcCCCC
Confidence            3345568999999998764

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=97.90  E-value=9e-06  Score=83.85  Aligned_cols=90  Identities=16%  Similarity=0.153  Sum_probs=67.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccHHHHhhcCc---eecCHHHHhccCcEEEEcCCCCCC---cCH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINALQASMEGY---EVTTMEEAAKEGGIFVTTTGCKDI---IRG  419 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~al~a~~~G~---~v~~Leell~~aDiIi~atgt~~l---I~~  419 (718)
                      -++|+|||+|.+|..+|+.+...  |.+|+++|+++.........|.   ...+++++++++|+|+++.....+   + .
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~~~~v~-~   84 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKKTIDFI-K   84 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHHHHHHH-H
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHHHHHHH-H
Confidence            36899999999999999999765  7899999988765433333454   245788889999999998765322   2 1


Q ss_pred             HHHhc-CCCCeEEEEcCCCC
Q psy7896         420 EHFLQ-MRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~-MK~gAiLIN~GRgd  438 (718)
                      +.... ++++.++++++...
T Consensus        85 ~l~~~~l~~~~ivi~~~~~~  104 (290)
T 3b1f_A           85 ILADLDLKEDVIITDAGSTK  104 (290)
T ss_dssp             HHHTSCCCTTCEEECCCSCH
T ss_pred             HHHhcCCCCCCEEEECCCCc
Confidence            22345 88999999988753

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=97.90  E-value=2.2e-05  Score=79.65  Aligned_cols=87  Identities=5%  Similarity=0.025  Sum_probs=67.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCcee-cCHHHHhccCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEV-TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v-~~Leell~~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                      ++|+|||+|.+|+.+++.+...|.+|.++|+++.+..... ..|..+ .+++++++++|+|++++...  ...+.+..++
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~~~--~~~~v~~~l~   81 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQ--LFETVLKPLH   81 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGG--GHHHHHTTSC
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeCcH--hHHHHHHHhc
Confidence            5899999999999999999999999999998876543322 225543 47889999999999987743  2245667788


Q ss_pred             CCeEEEEcCCC
Q psy7896         427 DDAIVCNIGHF  437 (718)
Q Consensus       427 ~gAiLIN~GRg  437 (718)
                      ++.++|+...+
T Consensus        82 ~~~~vv~~~~~   92 (259)
T 2ahr_A           82 FKQPIISMAAG   92 (259)
T ss_dssp             CCSCEEECCTT
T ss_pred             cCCEEEEeCCC
Confidence            88899998654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=97.84  E-value=4.4e-05  Score=80.59  Aligned_cols=89  Identities=17%  Similarity=0.150  Sum_probs=68.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHHHhh-cC--ce-ecCHHHHhccCcEEEEcCCC-CCCcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQASM-EG--YE-VTTMEEAAKEGGIFVTTTGC-KDIIR  418 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a~~-~G--~~-v~~Leell~~aDiIi~atgt-~~lI~  418 (718)
                      ...++|+|||+|.+|+.+++.+.. +|. +|.++++++.+...... .+  +. ..+++++++++|+|++++.. ..++.
T Consensus       133 ~~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~~~v~~  212 (312)
T 2i99_A          133 PSSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLATEPILF  212 (312)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCSSCCBC
T ss_pred             CCCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCCCcccC
Confidence            367899999999999999998865 487 89999988765433222 13  33 35799999999999998653 34555


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      .   +.+++|.+++++|..
T Consensus       213 ~---~~l~~g~~vi~~g~~  228 (312)
T 2i99_A          213 G---EWVKPGAHINAVGAS  228 (312)
T ss_dssp             G---GGSCTTCEEEECCCC
T ss_pred             H---HHcCCCcEEEeCCCC
Confidence            4   578999999999765

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=97.82  E-value=3.1e-05  Score=78.42  Aligned_cols=89  Identities=22%  Similarity=0.238  Sum_probs=64.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC----EEEEEecCCccHHHHh-hcCcee-cCHHHHhccCcEEEEcCCCCCC--cCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS----RVIVTEIDPINALQAS-MEGYEV-TTMEEAAKEGGIFVTTTGCKDI--IRGE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa----~Viv~d~dp~~al~a~-~~G~~v-~~Leell~~aDiIi~atgt~~l--I~~e  420 (718)
                      ++|+|||+|++|..+++.+...|.    +|+++|+++.+..... ..|... .+..++++++|+|++++....+  +-.+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~~~~~~~v~~~   82 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIKPDLYASIINE   82 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSCTTTHHHHC--
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeCHHHHHHHHHH
Confidence            689999999999999999999998    9999999886543332 236654 4789999999999998743221  1122


Q ss_pred             HHhcCCCCeEEEEcCCC
Q psy7896         421 HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       421 ~l~~MK~gAiLIN~GRg  437 (718)
                      ....++++.++|.+..+
T Consensus        83 l~~~l~~~~~vvs~~~g   99 (247)
T 3gt0_A           83 IKEIIKNDAIIVTIAAG   99 (247)
T ss_dssp             -CCSSCTTCEEEECSCC
T ss_pred             HHhhcCCCCEEEEecCC
Confidence            23456788888866544

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=97.77  E-value=6.3e-05  Score=78.14  Aligned_cols=90  Identities=16%  Similarity=0.055  Sum_probs=66.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCCccHHHHhh-cCceec-CHHHHhccCcEEEEcCCCCCC--cCHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDPINALQASM-EGYEVT-TMEEAAKEGGIFVTTTGCKDI--IRGE  420 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp~~al~a~~-~G~~v~-~Leell~~aDiIi~atgt~~l--I~~e  420 (718)
                      .++|+|||+|++|..+++.+...|.   +|+++|+++.+...... .|..+. +..++++++|+|+++.....+  +-.+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p~~~~~vl~~   82 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKPHQIKMVCEE   82 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCGGGHHHHHHH
T ss_pred             CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCHHHHHHHHHH
Confidence            4789999999999999999999898   89999998876544333 366654 788999999999998754322  1111


Q ss_pred             HHhc-CCCCeEEEEcCCC
Q psy7896         421 HFLQ-MRDDAIVCNIGHF  437 (718)
Q Consensus       421 ~l~~-MK~gAiLIN~GRg  437 (718)
                      .-.. ++++.++|++.-+
T Consensus        83 l~~~~l~~~~iiiS~~ag  100 (280)
T 3tri_A           83 LKDILSETKILVISLAVG  100 (280)
T ss_dssp             HHHHHHTTTCEEEECCTT
T ss_pred             HHhhccCCCeEEEEecCC
Confidence            1223 6788788877655

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=97.74  E-value=4.8e-05  Score=77.18  Aligned_cols=87  Identities=20%  Similarity=0.211  Sum_probs=62.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEec--CCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcC--HHHHhc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI--DPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIR--GEHFLQ  424 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~--dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~--~e~l~~  424 (718)
                      ++|+|||+|++|..+|+.|...|.+|+++++  ++.........|.. .+.+++++++|+|+++..+.....  .+....
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~~~~~~~   79 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAARRAGRH   79 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHHHHHHTT
T ss_pred             CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHHHHHHHh
Confidence            4799999999999999999999999999876  33222222234666 678899999999999865532111  233456


Q ss_pred             CCCCeEEEEcCCCC
Q psy7896         425 MRDDAIVCNIGHFD  438 (718)
Q Consensus       425 MK~gAiLIN~GRgd  438 (718)
                      +++  ++++++...
T Consensus        80 ~~~--~vi~~s~~~   91 (264)
T 1i36_A           80 VRG--IYVDINNIS   91 (264)
T ss_dssp             CCS--EEEECSCCC
T ss_pred             cCc--EEEEccCCC
Confidence            776  899987653

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=97.71  E-value=6.3e-05  Score=84.47  Aligned_cols=90  Identities=11%  Similarity=0.097  Sum_probs=70.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc---Cce---ecCHHHHhc---cCcEEEEcCCCC----
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME---GYE---VTTMEEAAK---EGGIFVTTTGCK----  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~---G~~---v~~Leell~---~aDiIi~atgt~----  414 (718)
                      -++|||||+|.+|..+|+.+...|.+|+++|+++.+.......   |..   ..+++|+++   .+|+|+++....    
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   83 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD   83 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence            3689999999999999999999999999999998654333222   322   367899887   499999985542    


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .++ .+....|++|.++|++|...
T Consensus        84 ~vl-~~l~~~L~~g~iIId~st~~  106 (484)
T 4gwg_A           84 DFI-EKLVPLLDTGDIIIDGGNSE  106 (484)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCC
T ss_pred             HHH-HHHHHhcCCCCEEEEcCCCC
Confidence            233 35567899999999999875

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=97.71  E-value=5.5e-05  Score=84.73  Aligned_cols=94  Identities=13%  Similarity=0.049  Sum_probs=70.6

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc----Ccee-cCHHHHhcc---CcEEEEcCCCC-
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME----GYEV-TTMEEAAKE---GGIFVTTTGCK-  414 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~----G~~v-~~Leell~~---aDiIi~atgt~-  414 (718)
                      ..+..++|||||+|.+|+.+|+.+...|.+|+++++++.+.......    |... .+++++++.   +|+|+++.... 
T Consensus        11 ~~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~   90 (480)
T 2zyd_A           11 HHMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGA   90 (480)
T ss_dssp             ----CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSS
T ss_pred             cccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHH
Confidence            34667899999999999999999999999999999987654332222    5543 478899887   99999986542 


Q ss_pred             ---CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 ---DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ---~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                         .++ .+....++++.++||++.+.
T Consensus        91 ~v~~vl-~~l~~~l~~g~iIId~s~g~  116 (480)
T 2zyd_A           91 GTDAAI-DSLKPYLDKGDIIIDGGNTF  116 (480)
T ss_dssp             HHHHHH-HHHGGGCCTTCEEEECSCCC
T ss_pred             HHHHHH-HHHHhhcCCCCEEEECCCCC
Confidence               233 34456789999999999875

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.70  E-value=7.5e-05  Score=82.60  Aligned_cols=91  Identities=24%  Similarity=0.285  Sum_probs=72.8

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEec-C-----CccHHHHhhcCceecCHHHHhccCcEEEEcCCCC---C
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-D-----PINALQASMEGYEVTTMEEAAKEGGIFVTTTGCK---D  415 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~-d-----p~~al~a~~~G~~v~~Leell~~aDiIi~atgt~---~  415 (718)
                      -|+||+|+|||||.-|.+-|..||.-|.+|++--+ +     ......|..+|+.+.+.+|+++.||+|.+.+...   .
T Consensus        34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~q~~  113 (491)
T 3ulk_A           34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQHSD  113 (491)
T ss_dssp             GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGGHHH
T ss_pred             HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhhHHH
Confidence            48999999999999999999999999999998533 1     1223456789999999999999999999865432   2


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +. ++....||+|+.|+= +||
T Consensus       114 vy-~~I~p~lk~G~~L~f-aHG  133 (491)
T 3ulk_A          114 VV-RTVQPLMKDGAALGY-SHG  133 (491)
T ss_dssp             HH-HHHGGGSCTTCEEEE-SSC
T ss_pred             HH-HHHHhhCCCCCEEEe-cCc
Confidence            34 456789999999984 554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.70  E-value=7.4e-05  Score=70.16  Aligned_cols=74  Identities=15%  Similarity=0.111  Sum_probs=52.2

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCceec-----C---HHHH-hccCcEEEEc
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEVT-----T---MEEA-AKEGGIFVTT  410 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v~-----~---Leel-l~~aDiIi~a  410 (718)
                      ++...+.+++|+|+|+|.+|+.+++.|+..|.+|+++++++.+...+. ..|..+.     +   +.++ ++.+|+|+.+
T Consensus        12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~   91 (155)
T 2g1u_A           12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF   91 (155)
T ss_dssp             -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred             hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence            345667899999999999999999999999999999999886543332 3344321     1   2233 5678999888


Q ss_pred             CCCC
Q psy7896         411 TGCK  414 (718)
Q Consensus       411 tgt~  414 (718)
                      +++.
T Consensus        92 ~~~~   95 (155)
T 2g1u_A           92 TNDD   95 (155)
T ss_dssp             SSCH
T ss_pred             eCCc
Confidence            7763

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.69  E-value=8.8e-05  Score=81.14  Aligned_cols=107  Identities=21%  Similarity=0.259  Sum_probs=85.0

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc---------cHHH---Hhh-cC-ceecCHHHHhccCc
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI---------NALQ---ASM-EG-YEVTTMEEAAKEGG  405 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~---------~al~---a~~-~G-~~v~~Leell~~aD  405 (718)
                      ..|..+...+|.|+|.|..|..+|+.+.++|+ +|+++|++..         ...+   +.. .- -...+|+|+++.+|
T Consensus       181 l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~AD  260 (398)
T 2a9f_A          181 LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGAD  260 (398)
T ss_dssp             TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTC
T ss_pred             HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCC
Confidence            34678899999999999999999999999999 9999997631         1111   110 10 01346999999999


Q ss_pred             EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +|+-++. .++++++.++.|+++++++..+.-..|+..+...+
T Consensus       261 V~IG~Sa-pgl~T~EmVk~Ma~~pIIfalsNPt~E~~pe~a~~  302 (398)
T 2a9f_A          261 IFIGVSA-PGVLKAEWISKMAARPVIFAMANPIPEIYPDEALE  302 (398)
T ss_dssp             SEEECCS-TTCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHHT
T ss_pred             EEEecCC-CCCCCHHHHHhhCCCCEEEECCCCCccCCHHHHHH
Confidence            9998876 79999999999999999999999877888765544

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.64  E-value=7.4e-05  Score=78.13  Aligned_cols=92  Identities=16%  Similarity=0.121  Sum_probs=67.6

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceecC---HHHHhccCcEEEEcCCCC---C-
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVTT---MEEAAKEGGIFVTTTGCK---D-  415 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~~---Leell~~aDiIi~atgt~---~-  415 (718)
                      ..+.||+++|+|.|.+|+.++..|...|+ +|+++++++.++.+. ...+...+   +.++++++|+||.+|+.-   + 
T Consensus       113 ~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~l-a~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~  191 (277)
T 3don_A          113 EGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNW-SLNINKINLSHAESHLDEFDIIINTTPAGMNGNT  191 (277)
T ss_dssp             TTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTC-CSCCEEECHHHHHHTGGGCSEEEECCC-------
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHH-HHhcccccHhhHHHHhcCCCEEEECccCCCCCCC
Confidence            45789999999999999999999999999 899999988654322 22333333   455678999999886531   1 


Q ss_pred             --CcCHHHHhcCCCCeEEEEcCCCCc
Q psy7896         416 --IIRGEHFLQMRDDAIVCNIGHFDC  439 (718)
Q Consensus       416 --lI~~e~l~~MK~gAiLIN~GRgd~  439 (718)
                        .+.   .+.++++.+++++...+.
T Consensus       192 ~~~l~---~~~l~~~~~V~D~vY~P~  214 (277)
T 3don_A          192 DSVIS---LNRLASHTLVSDIVYNPY  214 (277)
T ss_dssp             CCSSC---CTTCCSSCEEEESCCSSS
T ss_pred             cCCCC---HHHcCCCCEEEEecCCCC
Confidence              122   456889999999877543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=97.63  E-value=3.4e-05  Score=76.63  Aligned_cols=76  Identities=17%  Similarity=0.301  Sum_probs=55.1

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC---CcCH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD---IIRG  419 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~---lI~~  419 (718)
                      ..++.+++|+|||+|++|..+|+.+...|.+|+++++++.                 .++++|+|+++.....   ++. 
T Consensus        14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~-----------------~~~~aD~vi~av~~~~~~~v~~-   75 (209)
T 2raf_A           14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ-----------------ATTLGEIVIMAVPYPALAALAK-   75 (209)
T ss_dssp             ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC-----------------CSSCCSEEEECSCHHHHHHHHH-
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH-----------------HhccCCEEEEcCCcHHHHHHHH-
Confidence            4567899999999999999999999999999999987653                 4567999999876422   121 


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      +....++ ++++++++.+
T Consensus        76 ~l~~~~~-~~~vi~~~~g   92 (209)
T 2raf_A           76 QYATQLK-GKIVVDITNP   92 (209)
T ss_dssp             HTHHHHT-TSEEEECCCC
T ss_pred             HHHHhcC-CCEEEEECCC
Confidence            1223467 8999999886

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.59  E-value=5.4e-05  Score=72.68  Aligned_cols=92  Identities=20%  Similarity=0.172  Sum_probs=61.5

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhC-CCEEEEEecCCccHHHHhhcCceec-----C---HHHH--hccCcEEEEcC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDPINALQASMEGYEVT-----T---MEEA--AKEGGIFVTTT  411 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~f-Ga~Viv~d~dp~~al~a~~~G~~v~-----~---Leel--l~~aDiIi~at  411 (718)
                      +.++.+++|+|+|+|.+|+.+|+.|+.. |.+|+++|+++.+.......|..+.     +   +.++  +..+|+|+.++
T Consensus        34 ~~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~  113 (183)
T 3c85_A           34 LINPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM  113 (183)
T ss_dssp             CBCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred             CcCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence            3457789999999999999999999999 9999999999866544444455432     2   3333  56788888877


Q ss_pred             CCCCC--cCHHHHhcCCCCeEEEEc
Q psy7896         412 GCKDI--IRGEHFLQMRDDAIVCNI  434 (718)
Q Consensus       412 gt~~l--I~~e~l~~MK~gAiLIN~  434 (718)
                      ++...  .-...+..+.+...++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~ii~~  138 (183)
T 3c85_A          114 PHHQGNQTALEQLQRRNYKGQIAAI  138 (183)
T ss_dssp             SSHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CChHHHHHHHHHHHHHCCCCEEEEE
Confidence            64211  111234455544444443

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=97.59  E-value=0.0001  Score=77.82  Aligned_cols=92  Identities=14%  Similarity=0.112  Sum_probs=66.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCc--cHHHHhhcCceec-CHHHHhccCcEEEEcCCCCCCcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPI--NALQASMEGYEVT-TMEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~--~al~a~~~G~~v~-~Leell~~aDiIi~atgt~~lI~  418 (718)
                      +..++|+|||+|++|..+|..|...|    .+|+++++++.  +.......|..+. +..++++.+|+|+++.....+-.
T Consensus        20 ~~~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~~~~~~~   99 (322)
T 2izz_A           20 FQSMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVKPHIIPF   99 (322)
T ss_dssp             --CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSCGGGHHH
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeCHHHHHH
Confidence            34468999999999999999999888    68999998874  3222234476654 68899999999999876432211


Q ss_pred             --HHHHhcCCCCeEEEEcCCC
Q psy7896         419 --GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 --~e~l~~MK~gAiLIN~GRg  437 (718)
                        .+....++++.++|++.-+
T Consensus       100 vl~~l~~~l~~~~ivvs~s~g  120 (322)
T 2izz_A          100 ILDEIGADIEDRHIVVSCAAG  120 (322)
T ss_dssp             HHHHHGGGCCTTCEEEECCTT
T ss_pred             HHHHHHhhcCCCCEEEEeCCC
Confidence              1223457889999998654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=97.59  E-value=4.6e-05  Score=80.32  Aligned_cols=88  Identities=20%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-------Ccee-cCHHHHhccCcEEEEcCCCCCCcC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-------GYEV-TTMEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-------G~~v-~~Leell~~aDiIi~atgt~~lI~  418 (718)
                      +-|+|+|||.|.+|..+|+.+. .|.+|+++|+++.....+...       +..+ .++++ +++||+|+.+....--+.
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk   88 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTK   88 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHH
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHH
Confidence            5699999999999999999999 999999999988654333222       3433 35666 889999999855432222


Q ss_pred             HH---HHhcCCCCeEEE-EcCCC
Q psy7896         419 GE---HFLQMRDDAIVC-NIGHF  437 (718)
Q Consensus       419 ~e---~l~~MK~gAiLI-N~GRg  437 (718)
                      ..   .++.+ ++++++ |++..
T Consensus        89 ~~l~~~l~~~-~~~IlasntSti  110 (293)
T 1zej_A           89 VEVLREVERL-TNAPLCSNTSVI  110 (293)
T ss_dssp             HHHHHHHHTT-CCSCEEECCSSS
T ss_pred             HHHHHHHhcC-CCCEEEEECCCc
Confidence            22   25667 898885 88764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.58  E-value=0.00018  Score=74.23  Aligned_cols=94  Identities=14%  Similarity=0.137  Sum_probs=66.7

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hc----CceecCHHHHh-ccCcEEEEcCCCCCC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-ME----GYEVTTMEEAA-KEGGIFVTTTGCKDI  416 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~----G~~v~~Leell-~~aDiIi~atgt~~l  416 (718)
                      +..+.||+++|+|.|.+|+.+++.|...|++|+++++++.+..+.. ..    ...+.+++++. ..+|++|.+++....
T Consensus       114 ~~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~  193 (271)
T 1nyt_A          114 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS  193 (271)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG
T ss_pred             CcCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC
Confidence            4567899999999999999999999999999999998875432211 11    12234444444 589999998764322


Q ss_pred             -----cCHHHHhcCCCCeEEEEcCCCCc
Q psy7896         417 -----IRGEHFLQMRDDAIVCNIGHFDC  439 (718)
Q Consensus       417 -----I~~e~l~~MK~gAiLIN~GRgd~  439 (718)
                           +..   +.++++.+++++.....
T Consensus       194 ~~~~~i~~---~~l~~~~~v~D~~y~p~  218 (271)
T 1nyt_A          194 GDIPAIPS---SLIHPGIYCYDMFYQKG  218 (271)
T ss_dssp             TCCCCCCG---GGCCTTCEEEESCCCSS
T ss_pred             CCCCCCCH---HHcCCCCEEEEeccCCc
Confidence                 332   33678888998877543

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.58  E-value=0.00016  Score=75.87  Aligned_cols=91  Identities=23%  Similarity=0.165  Sum_probs=66.1

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh-hcCc---eec---CHHHHhccCcEEEEcCCCCC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS-MEGY---EVT---TMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~-~~G~---~v~---~Leell~~aDiIi~atgt~~  415 (718)
                      ..+.|++++|+|.|.+|+.++..|...|+ +|+++++++.++.+.. ..+.   .+.   ++.+.++++|+||.+++...
T Consensus       137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~  216 (297)
T 2egg_A          137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM  216 (297)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred             CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence            46789999999999999999999999998 9999999876543221 1122   333   35566789999999876421


Q ss_pred             -------CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 -------IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 -------lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                             .++   .+.++++.+++++...
T Consensus       217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~  242 (297)
T 2egg_A          217 HPRVEVQPLS---LERLRPGVIVSDIIYN  242 (297)
T ss_dssp             SSCCSCCSSC---CTTCCTTCEEEECCCS
T ss_pred             CCCCCCCCCC---HHHcCCCCEEEEcCCC
Confidence                   122   2456788888887764

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=97.56  E-value=8e-05  Score=81.53  Aligned_cols=80  Identities=16%  Similarity=0.260  Sum_probs=65.4

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHhCCC---EEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcC----CCCCCcC
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRLFGS---RVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTT----GCKDIIR  418 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~fGa---~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~at----gt~~lI~  418 (718)
                      ..-+|.|||. |++|+..++.|+++|+   +|.++|.++..      .|-.+    +.++++|+||.+.    ..+.+|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~------~g~~~----~~i~~aDivIn~vlig~~aP~Lvt  282 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETS------RGGPF----DEIPQADIFINCIYLSKPIAPFTN  282 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHT------TCSCC----THHHHSSEEEECCCCCSSCCCSCC
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccc------cCCch----hhHhhCCEEEECcCcCCCCCcccC
Confidence            4678999999 9999999999999998   89999876521      13222    3466999999873    3567999


Q ss_pred             HHHHhcC-CCCeEEEEcCC
Q psy7896         419 GEHFLQM-RDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~M-K~gAiLIN~GR  436 (718)
                      ++.++.| |+|+++|+++-
T Consensus       283 ~e~v~~m~k~gsVIVDVA~  301 (394)
T 2qrj_A          283 MEKLNNPNRRLRTVVDVSA  301 (394)
T ss_dssp             HHHHCCTTCCCCEEEETTC
T ss_pred             HHHHhcCcCCCeEEEEEec
Confidence            9999999 99999999964

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=97.56  E-value=0.00014  Score=76.49  Aligned_cols=86  Identities=17%  Similarity=0.191  Sum_probs=63.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-Cc---------------eecCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-GY---------------EVTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-G~---------------~v~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|.+|..+|..|...|.+|+++++++......... +.               ...+++++++.+|+|++++.
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   84 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP   84 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence            689999999999999999999999999999887543222222 21               23478888999999999876


Q ss_pred             CCCC--cCHHHHhcCCCCeEEEEc
Q psy7896         413 CKDI--IRGEHFLQMRDDAIVCNI  434 (718)
Q Consensus       413 t~~l--I~~e~l~~MK~gAiLIN~  434 (718)
                      +...  +-.+....+++++++++.
T Consensus        85 ~~~~~~~~~~l~~~l~~~~~vv~~  108 (359)
T 1bg6_A           85 AIHHASIAANIASYISEGQLIILN  108 (359)
T ss_dssp             GGGHHHHHHHHGGGCCTTCEEEES
T ss_pred             chHHHHHHHHHHHhCCCCCEEEEc
Confidence            5432  112223458899988888

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=97.53  E-value=6.3e-05  Score=76.13  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=62.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhh-cCcee-cCHHHHhccCcEEEEcCCCCCCcCHHHHhcC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASM-EGYEV-TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQM  425 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~-~G~~v-~~Leell~~aDiIi~atgt~~lI~~e~l~~M  425 (718)
                      ++|+|||+|++|..+|+.+...| .+|.++++++.+...... .|..+ .+.++++ .+|+|++++....+  .+.+..+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~~~~~--~~v~~~l   77 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVKPQDM--EAACKNI   77 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSCHHHH--HHHHTTC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeCchhH--HHHHHHh
Confidence            47999999999999999999889 999999988765433322 26554 3567778 99999998763221  3444445


Q ss_pred             CC-CeEEEEcCCC
Q psy7896         426 RD-DAIVCNIGHF  437 (718)
Q Consensus       426 K~-gAiLIN~GRg  437 (718)
                      ++ +.+++++..+
T Consensus        78 ~~~~~ivv~~~~g   90 (263)
T 1yqg_A           78 RTNGALVLSVAAG   90 (263)
T ss_dssp             CCTTCEEEECCTT
T ss_pred             ccCCCEEEEecCC
Confidence            32 8899998554

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.00014  Score=81.89  Aligned_cols=90  Identities=10%  Similarity=0.022  Sum_probs=70.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----cCcee-cCHHHHhcc---CcEEEEcCCCC----
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----EGYEV-TTMEEAAKE---GGIFVTTTGCK----  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----~G~~v-~~Leell~~---aDiIi~atgt~----  414 (718)
                      ..+|||||+|.+|..+|+.+...|.+|+++++++.+......     .|... .+++++++.   +|+|+++..+.    
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~   89 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD   89 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred             CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence            468999999999999999999999999999998876443333     35543 478898877   99999986552    


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .++ .+....+++|.++|+++.+.
T Consensus        90 ~vl-~~l~~~l~~g~iIId~s~~~  112 (497)
T 2p4q_A           90 ALI-NQIVPLLEKGDIIIDGGNSH  112 (497)
T ss_dssp             HHH-HHHGGGCCTTCEEEECSCCC
T ss_pred             HHH-HHHHHhCCCCCEEEECCCCC
Confidence            233 34456789999999998874

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.53  E-value=0.00021  Score=73.46  Aligned_cols=38  Identities=21%  Similarity=0.233  Sum_probs=34.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..+.+|+|.|||.|.||..+|..++.+|.+|+++++.+
T Consensus       141 ~~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  178 (312)
T 4gcm_A          141 AFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRD  178 (312)
T ss_dssp             GGGTTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeccc
Confidence            34678999999999999999999999999999997654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=97.48  E-value=0.00029  Score=78.40  Aligned_cols=89  Identities=16%  Similarity=0.132  Sum_probs=65.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccHHHH---------------hh----cCcee-cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINALQA---------------SM----EGYEV-TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~al~a---------------~~----~G~~v-~~Leell~~aDi  406 (718)
                      ++|+|||+|.+|..+|..|...  |.+|+++|+++.+....               ..    .+..+ .+++++++++|+
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv   85 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL   85 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence            5899999999999999999877  89999999887543221               11    23433 467889999999


Q ss_pred             EEEcCCCCCCcC-----------------HHHHhcCCCCeEEEEcCCC
Q psy7896         407 FVTTTGCKDIIR-----------------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       407 Ii~atgt~~lI~-----------------~e~l~~MK~gAiLIN~GRg  437 (718)
                      |+++.++..-.+                 .+....|+++.++||.+..
T Consensus        86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  133 (467)
T 2q3e_A           86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTV  133 (467)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCC
T ss_pred             EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcC
Confidence            999865432111                 1233568999999998764

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=97.48  E-value=0.00052  Score=72.81  Aligned_cols=100  Identities=22%  Similarity=0.263  Sum_probs=73.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHHHh---hcCc--eecCHHHHhccCcEEEEcCCCC-CCcC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQAS---MEGY--EVTTMEEAAKEGGIFVTTTGCK-DIIR  418 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~a~---~~G~--~v~~Leell~~aDiIi~atgt~-~lI~  418 (718)
                      ..++++|||.|.+|+..++.+.. ++. +|.+++++....+...   ..|.  ...+++++++++|+|+++|... .++.
T Consensus       120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~~pvl~  199 (313)
T 3hdj_A          120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRSTTPLFA  199 (313)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCSSCSSC
T ss_pred             CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCCCcccC
Confidence            47899999999999999998875 444 7999998822222111   1244  2348999999999999987643 4555


Q ss_pred             HHHHhcCCCCeEEEEcCCC---CccccHHHHhcc
Q psy7896         419 GEHFLQMRDDAIVCNIGHF---DCEIQVSWLDKN  449 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~~  449 (718)
                      .   +.+|+|+.++++|..   ..|+|.+.+...
T Consensus       200 ~---~~l~~G~~V~~vGs~~p~~~El~~~~~~~a  230 (313)
T 3hdj_A          200 G---QALRAGAFVGAIGSSLPHTRELDDEALRRA  230 (313)
T ss_dssp             G---GGCCTTCEEEECCCSSTTCCCCCHHHHHHC
T ss_pred             H---HHcCCCcEEEECCCCCCchhhcCHHHHhcC
Confidence            3   468999999999874   257887766543

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=97.47  E-value=0.00018  Score=80.39  Aligned_cols=89  Identities=10%  Similarity=0.032  Sum_probs=68.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----cCce-ecCHHHHhc---cCcEEEEcCCCC-C---
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----EGYE-VTTMEEAAK---EGGIFVTTTGCK-D---  415 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----~G~~-v~~Leell~---~aDiIi~atgt~-~---  415 (718)
                      ++|||||+|.+|+.+|..+...|.+|.++++++.+......     .|.. ..+++++++   .+|+|+++..+. .   
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~   82 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN   82 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence            57999999999999999999999999999998865433332     3554 357888874   899999986653 2   


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ++ .+....++++.+||+++.+.
T Consensus        83 vl-~~l~~~l~~g~iII~~s~~~  104 (482)
T 2pgd_A           83 FI-EKLVPLLDIGDIIIDGGNSE  104 (482)
T ss_dssp             HH-HHHHHHCCTTCEEEECSCCC
T ss_pred             HH-HHHHhhcCCCCEEEECCCCC
Confidence            23 23445789999999998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.47  E-value=0.0003  Score=78.02  Aligned_cols=115  Identities=27%  Similarity=0.267  Sum_probs=74.1

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh--hhhhhhhhhHHH---HHHHHHHhccccccc-------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASMEGYELDEEV---AALHLEHLGVKLTKL-------  334 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~--AvaeGf~L~r~i---~~~~l~~lgv~~~~~-------  334 (718)
                      ..+++|+|||.|+.|+.+|..|++.|+.|+++|..+.....  -....|.+.+++   ....+...++++...       
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~~v  199 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLVYGIPGFKLEKSVVERRVKLLADAGVIYHPNFEVGRDA  199 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHHTTCEEETTCCBTTTB
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCcEEEeCCEeccEE
Confidence            35789999999999999999999999999999986542110  001123333322   122223333332100       


Q ss_pred             ----------------chhhh-----------------hh--------hc----------ccccCcEEEEEecChhHHHH
Q psy7896         335 ----------------TEDQA-----------------KY--------LD----------IMLAGKVAVVAGYGDVGKGC  363 (718)
Q Consensus       335 ----------------~~~~~-----------------~~--------~g----------~eL~GktVGIIG~G~IG~~v  363 (718)
                                      ..+..                 .+        .+          ....||+|.|||.|++|..+
T Consensus       200 ~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a~d~  279 (456)
T 2vdc_G          200 SLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDC  279 (456)
T ss_dssp             CHHHHHSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHHHHH
T ss_pred             EhhHhHhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhHHHH
Confidence                            00000                 00        01          11468999999999999999


Q ss_pred             HHHHHhCCC-EEEEEecCC
Q psy7896         364 AQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       364 A~~l~~fGa-~Viv~d~dp  381 (718)
                      |..+..+|+ +|+++.+.+
T Consensus       280 A~~~~r~Ga~~Vtiv~r~~  298 (456)
T 2vdc_G          280 VRTAIRQGATSVKCLYRRD  298 (456)
T ss_dssp             HHHHHHTTCSEEEEECSSC
T ss_pred             HHHHHHcCCCEEEEEEeCC
Confidence            999999999 599987654

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=97.46  E-value=0.00016  Score=80.67  Aligned_cols=89  Identities=16%  Similarity=0.079  Sum_probs=68.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc----Ccee-cCHHHHhcc---CcEEEEcCCCC-C---C
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME----GYEV-TTMEEAAKE---GGIFVTTTGCK-D---I  416 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~----G~~v-~~Leell~~---aDiIi~atgt~-~---l  416 (718)
                      ++|||||+|.+|+.+|+.+...|.+|.++++++.+.......    |... .+++++++.   +|+|+++..+. .   +
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v   85 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT   85 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred             CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence            579999999999999999999999999999887654332222    5543 578898876   99999986653 2   2


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCC
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      + .+....+++|.++|+++.+.
T Consensus        86 l-~~l~~~l~~g~iiId~s~~~  106 (474)
T 2iz1_A           86 I-KSLLPLLDIGDILIDGGNTH  106 (474)
T ss_dssp             H-HHHGGGCCTTCEEEECSCCC
T ss_pred             H-HHHHhhCCCCCEEEECCCCC
Confidence            3 23345789999999998874

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=97.46  E-value=0.00018  Score=75.22  Aligned_cols=88  Identities=14%  Similarity=0.140  Sum_probs=63.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEec--CCccHHHHhhcCc-----------eec---CHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI--DPINALQASMEGY-----------EVT---TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~--dp~~al~a~~~G~-----------~v~---~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|.+|..+|..|...|.+|+++++  ++.........|.           .+.   ++.++++.+|+|+++..
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~   80 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence            4799999999999999999988999999988  6654332223332           232   57788899999999876


Q ss_pred             CCCCcC--HHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIR--GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~--~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+-.  .+... ++++.+++++..+
T Consensus        81 ~~~~~~v~~~i~~-l~~~~~vv~~~ng  106 (335)
T 1txg_A           81 TDGVLPVMSRILP-YLKDQYIVLISKG  106 (335)
T ss_dssp             GGGHHHHHHHHTT-TCCSCEEEECCCS
T ss_pred             hHHHHHHHHHHhc-CCCCCEEEEEcCc
Confidence            643211  12224 7789999988654

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.46  E-value=0.00014  Score=65.73  Aligned_cols=83  Identities=13%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-----cCH---HHH-hccCcEEEEcCCCC--
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-----TTM---EEA-AKEGGIFVTTTGCK--  414 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-----~~L---eel-l~~aDiIi~atgt~--  414 (718)
                      +.+++|+|+|+|.+|+.+++.|...|.+|+++|+++.+.......|..+     .+.   .++ ++.+|+++.+++..  
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~   83 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ   83 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred             CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence            5678999999999999999999999999999998875432222234322     122   233 56789998887753  


Q ss_pred             -CCcCHHHHhcCCCC
Q psy7896         415 -DIIRGEHFLQMRDD  428 (718)
Q Consensus       415 -~lI~~e~l~~MK~g  428 (718)
                       +..-......+.+.
T Consensus        84 ~~~~~~~~~~~~~~~   98 (144)
T 2hmt_A           84 ASTLTTLLLKELDIP   98 (144)
T ss_dssp             HHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHcCCC
Confidence             12222334455555

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=97.45  E-value=0.00026  Score=78.62  Aligned_cols=89  Identities=20%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-------------------cC-ce-ecCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-------------------EG-YE-VTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-------------------~G-~~-v~~Leell~~aDiI  407 (718)
                      ++|+|||+|.+|..+|..+...|.+|+++|+++.+......                   .+ .. ..+++++++++|+|
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV   82 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII   82 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence            58999999999999999999999999999998764322111                   12 22 34788999999999


Q ss_pred             EEcCCCC----------CCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896         408 VTTTGCK----------DII--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       408 i~atgt~----------~lI--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++.++.          .+.  -.+....++++.++|+.+-.
T Consensus        83 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~STv  124 (450)
T 3gg2_A           83 FIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKSTV  124 (450)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             EEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEeeeC
Confidence            9987664          121  12334568999999998853

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.45  E-value=0.0002  Score=66.17  Aligned_cols=102  Identities=16%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----C---HHHH-hccCcEEEEcCCCCC--C
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----T---MEEA-AKEGGIFVTTTGCKD--I  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~---Leel-l~~aDiIi~atgt~~--l  416 (718)
                      .++|.|+|+|++|+.+|+.|+..|.+|+++|.+|.+.......|+.+.     +   +.++ +.++|+++.++++..  .
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~   86 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG   86 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence            357999999999999999999999999999999876544444566432     1   2222 467899888876531  1


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhcccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAV  451 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l  451 (718)
                      .-...+..+.++..++--.+.  .-..+.|.+.+.
T Consensus        87 ~~~~~a~~~~~~~~iiar~~~--~~~~~~l~~~G~  119 (140)
T 3fwz_A           87 EIVASARAKNPDIEIIARAHY--DDEVAYITERGA  119 (140)
T ss_dssp             HHHHHHHHHCSSSEEEEEESS--HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCeEEEEECC--HHHHHHHHHCCC
Confidence            112234445555555543332  223344554443

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=97.45  E-value=0.00016  Score=80.09  Aligned_cols=95  Identities=11%  Similarity=0.067  Sum_probs=66.1

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh------------------cCcee-cCHHHHh
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM------------------EGYEV-TTMEEAA  401 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~------------------~G~~v-~~Leell  401 (718)
                      .++++..-++|+|||.|.+|..+|..+.. |.+|+++|+++.+......                  .+..+ .++++++
T Consensus        29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~  107 (432)
T 3pid_A           29 QMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY  107 (432)
T ss_dssp             ------CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred             ccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence            34566677899999999999999999987 9999999998864322111                  12333 4688999


Q ss_pred             ccCcEEEEcCCCCC-----CcC--------HHHHhcCCCCeEEEEcCCC
Q psy7896         402 KEGGIFVTTTGCKD-----IIR--------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       402 ~~aDiIi~atgt~~-----lI~--------~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++|+|++++++.-     ..+        ..... |++++++|+.+-.
T Consensus       108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv  155 (432)
T 3pid_A          108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTI  155 (432)
T ss_dssp             TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCC
T ss_pred             hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCC
Confidence            99999999876531     111        22334 8999999998764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=97.45  E-value=0.0002  Score=74.52  Aligned_cols=88  Identities=16%  Similarity=0.086  Sum_probs=61.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC------------------ce-ecCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG------------------YE-VTTME  398 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G------------------~~-v~~Le  398 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+           ...|                  .. ..+++
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~   95 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   95 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence            689999999999999999999999999999887542211           0112                  22 34678


Q ss_pred             HHhccCcEEEEcCCCCC----CcCHHHHhcCCCCeEEE-EcCC
Q psy7896         399 EAAKEGGIFVTTTGCKD----IIRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       399 ell~~aDiIi~atgt~~----lI~~e~l~~MK~gAiLI-N~GR  436 (718)
                      +.++++|+|+.+....-    .+-.+....++++++++ |++.
T Consensus        96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~  138 (302)
T 1f0y_A           96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS  138 (302)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS
T ss_pred             HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC
Confidence            88999999999865421    11122224578888887 4443

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=97.45  E-value=0.00011  Score=71.89  Aligned_cols=86  Identities=23%  Similarity=0.189  Sum_probs=62.3

Q ss_pred             cEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-C-------ceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-G-------YEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-G-------~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      ++|+||| .|.+|+.+++.+...|.+|+++++++.+....... +       ....+++++++++|+|+.++....+  .
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~~~~~--~   78 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHA--I   78 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHH--H
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCChhhH--H
Confidence            3799999 99999999999999999999999887543221111 1       3345788899999999998764321  1


Q ss_pred             HHH----hcCCCCeEEEEcCCC
Q psy7896         420 EHF----LQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l----~~MK~gAiLIN~GRg  437 (718)
                      +.+    ..++ +.++++++.+
T Consensus        79 ~~~~~l~~~~~-~~~vi~~~~g   99 (212)
T 1jay_A           79 DTARDLKNILR-EKIVVSPLVP   99 (212)
T ss_dssp             HHHHHTHHHHT-TSEEEECCCC
T ss_pred             HHHHHHHHHcC-CCEEEEcCCC
Confidence            222    2344 8899999875

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=97.43  E-value=0.00018  Score=72.66  Aligned_cols=82  Identities=15%  Similarity=0.150  Sum_probs=60.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCC----CEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCCCCCcCHHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFG----SRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fG----a~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt~~lI~~e~l  422 (718)
                      .++|+|||+|++|..+|+.+...|    .+|.++|+++.+      .|..+ .+..++++.+|+|+++.....+  .+.+
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~~~~~--~~v~   75 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVKPDIA--GSVL   75 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSCTTTH--HHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeCHHHH--HHHH
Confidence            468999999999999999998888    689999988754      35554 3688999999999998765322  2222


Q ss_pred             ----hcCCCCeEEEEcCCC
Q psy7896         423 ----LQMRDDAIVCNIGHF  437 (718)
Q Consensus       423 ----~~MK~gAiLIN~GRg  437 (718)
                          ..++++.++.+++..
T Consensus        76 ~~l~~~l~~~~vv~~~~gi   94 (262)
T 2rcy_A           76 NNIKPYLSSKLLISICGGL   94 (262)
T ss_dssp             HHSGGGCTTCEEEECCSSC
T ss_pred             HHHHHhcCCCEEEEECCCC
Confidence                334555566655543

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.42  E-value=0.00021  Score=74.75  Aligned_cols=93  Identities=14%  Similarity=0.187  Sum_probs=67.2

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh--c---CceecCHHHHhccCcEEEEcCCCC--
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM--E---GYEVTTMEEAAKEGGIFVTTTGCK--  414 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~--~---G~~v~~Leell~~aDiIi~atgt~--  414 (718)
                      +.++.||++.|+|.|.+|+.++..|...|+ +|+++++++.++.+...  .   .....+++++.+++|+||.+|+..  
T Consensus       121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~  200 (281)
T 3o8q_A          121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD  200 (281)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-
T ss_pred             CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC
Confidence            456789999999999999999999999997 99999998865432111  1   234556777768899999987542  


Q ss_pred             ---CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 ---DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ---~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                         -.+.   .+.++++.+++++...+
T Consensus       201 ~~~~~l~---~~~l~~~~~V~DlvY~P  224 (281)
T 3o8q_A          201 GELPAID---PVIFSSRSVCYDMMYGK  224 (281)
T ss_dssp             ---CSCC---GGGEEEEEEEEESCCCS
T ss_pred             CCCCCCC---HHHhCcCCEEEEecCCC
Confidence               1233   23467788888876643

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.40  E-value=0.00031  Score=61.38  Aligned_cols=66  Identities=17%  Similarity=0.112  Sum_probs=48.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhhcCcee--------cCHHHHhccCcEEEEcCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASMEGYEV--------TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~~G~~v--------~~Leell~~aDiIi~atg  412 (718)
                      .+++|+|+|.|.||+.+++.|...| .+|+++++++.+.......+...        .++.++++.+|+|+.+++
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~   78 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAP   78 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSC
T ss_pred             CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCC
Confidence            4689999999999999999999999 89999998876543332233322        124456677888877764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.39  E-value=0.0002  Score=74.03  Aligned_cols=70  Identities=10%  Similarity=0.158  Sum_probs=51.9

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh---hc--CceecCHHHHhc-cCcEEEEcCCC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS---ME--GYEVTTMEEAAK-EGGIFVTTTGC  413 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~---~~--G~~v~~Leell~-~aDiIi~atgt  413 (718)
                      ..+.||+++|+|.|.+|+.++..|...|++|+++++++.++.+..   ..  .....+++++.+ ++|+||.+++.
T Consensus       115 ~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~  190 (272)
T 1p77_A          115 WLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSA  190 (272)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCC
Confidence            456899999999999999999999999999999999875432211   11  122334445434 89999998765

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.39  E-value=0.00031  Score=64.33  Aligned_cols=67  Identities=15%  Similarity=0.155  Sum_probs=48.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----CH---HHH-hccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----TM---EEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~L---eel-l~~aDiIi~atgt  413 (718)
                      .++++.|+|+|.+|+.+|+.|...|.+|+++|++|.........|+.+.     +.   .++ ++++|+++.++++
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~   80 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSD   80 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCC
Confidence            4678999999999999999999999999999998865444434454321     22   222 3567888877664

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.38  E-value=0.00017  Score=74.27  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=62.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-------------cCHHHHhc---cCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-------------TTMEEAAK---EGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-------------~~Leell~---~aDiIi~atg  412 (718)
                      ++|+|||.|.+|..+|..|...|.+|+++++++.........|...             .+.+++.+   .+|+|++++.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~   83 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK   83 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence            5899999999999999999999999999998875433322334322             23345544   8999999876


Q ss_pred             CCCC--cCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDI--IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~l--I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+  +-.+....++++.+++++..+
T Consensus        84 ~~~~~~v~~~l~~~l~~~~~iv~~~~g  110 (316)
T 2ew2_A           84 AQQLDAMFKAIQPMITEKTYVLCLLNG  110 (316)
T ss_dssp             HHHHHHHHHHHGGGCCTTCEEEECCSS
T ss_pred             cccHHHHHHHHHHhcCCCCEEEEecCC
Confidence            5322  111223457889999988654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=97.35  E-value=0.00033  Score=77.08  Aligned_cols=89  Identities=19%  Similarity=0.234  Sum_probs=64.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-------------------cC-ce-ecCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-------------------EG-YE-VTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-------------------~G-~~-v~~Leell~~aDiI  407 (718)
                      ++|+|||+|.+|..+|..+...|.+|+++|+++.+......                   .| .. ..+++++++.+|+|
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv   80 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence            47999999999999999999999999999998764322211                   22 22 34688889999999


Q ss_pred             EEcCCCCCC----cC--------HHHHhcCCC---CeEEEEcCCC
Q psy7896         408 VTTTGCKDI----IR--------GEHFLQMRD---DAIVCNIGHF  437 (718)
Q Consensus       408 i~atgt~~l----I~--------~e~l~~MK~---gAiLIN~GRg  437 (718)
                      +++.++..-    .|        .+....|++   +.++|+.+..
T Consensus        81 iiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv  125 (436)
T 1mv8_A           81 FICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTV  125 (436)
T ss_dssp             EECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCC
T ss_pred             EEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCc
Confidence            998765431    11        122345788   9999998654

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=97.35  E-value=0.00023  Score=79.64  Aligned_cols=89  Identities=17%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-C-------ce-ecCHHHHhcc---CcEEEEcCCCC-C
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-G-------YE-VTTMEEAAKE---GGIFVTTTGCK-D  415 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-G-------~~-v~~Leell~~---aDiIi~atgt~-~  415 (718)
                      ++|||||+|.+|+.+|..+...|.+|.++++++.+....... |       .. ..+++++++.   +|+|+++..+. .
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~   81 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHH
Confidence            479999999999999999999999999999887654322222 4       33 3578888874   99999986653 2


Q ss_pred             ---CcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         416 ---IIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       416 ---lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                         ++ .+....++++.++|+++.+.
T Consensus        82 v~~vl-~~l~~~l~~g~iIId~sng~  106 (478)
T 1pgj_A           82 TDSTI-EQLKKVFEKGDILVDTGNAH  106 (478)
T ss_dssp             HHHHH-HHHHHHCCTTCEEEECCCCC
T ss_pred             HHHHH-HHHHhhCCCCCEEEECCCCC
Confidence               23 23345789999999998774

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=97.32  E-value=0.00078  Score=72.53  Aligned_cols=99  Identities=19%  Similarity=0.265  Sum_probs=72.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHH-hCC-CEEEEEecCCccHHHHhhc-----Cce---ecCHHHHhccCcEEEEcCCCC--
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLR-LFG-SRVIVTEIDPINALQASME-----GYE---VTTMEEAAKEGGIFVTTTGCK--  414 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~-~fG-a~Viv~d~dp~~al~a~~~-----G~~---v~~Leell~~aDiIi~atgt~--  414 (718)
                      ..++++|||.|.+|+..++.+. ..+ -+|.++++++.++......     |..   +.+++++++++|+|+++|...  
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~~~  207 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY  207 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCCCC
Confidence            5789999999999999988764 445 4899999988654332211     532   357899999999999998764  


Q ss_pred             -CCcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         415 -DIIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       415 -~lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                       .++..   +.+++|..++++|..   ..|++.+.+..
T Consensus       208 ~pvl~~---~~l~~G~~V~~vgs~~p~~~El~~~~~~~  242 (350)
T 1x7d_A          208 ATIITP---DMLEPGMHLNAVGGDCPGKTELHADVLRN  242 (350)
T ss_dssp             EEEECG---GGCCTTCEEEECSCCBTTBEEECHHHHHT
T ss_pred             CceecH---HHcCCCCEEEECCCCCCCceeeCHHHHhc
Confidence             24543   568999999999864   35677655544

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.31  E-value=0.00053  Score=61.72  Aligned_cols=85  Identities=22%  Similarity=0.318  Sum_probs=54.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCcee-----cCHHH---H-hccCcEEEEcCCCCC--
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYEV-----TTMEE---A-AKEGGIFVTTTGCKD--  415 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~v-----~~Lee---l-l~~aDiIi~atgt~~--  415 (718)
                      +++|+|+|+|.+|+.+++.|...|.+|+++|+++........ .|..+     .+.+.   . ++.+|+|+.+++...  
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~   83 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN   83 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence            578999999999999999999999999999988754322221 24422     12222   2 567899888876531  


Q ss_pred             CcCHHHHhcCCCCeEEE
Q psy7896         416 IIRGEHFLQMRDDAIVC  432 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLI  432 (718)
                      ..-......++++.+++
T Consensus        84 ~~~~~~~~~~~~~~ii~  100 (140)
T 1lss_A           84 LMSSLLAKSYGINKTIA  100 (140)
T ss_dssp             HHHHHHHHHTTCCCEEE
T ss_pred             HHHHHHHHHcCCCEEEE
Confidence            11112334455554444

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.31  E-value=0.00059  Score=69.68  Aligned_cols=36  Identities=33%  Similarity=0.433  Sum_probs=32.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..+++|.|||.|.||..+|..++.+|.+|+++++.+
T Consensus       150 ~~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~  185 (314)
T 4a5l_A          150 FRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD  185 (314)
T ss_dssp             GTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHhCCeeeeecccc
Confidence            468999999999999999999999999999987644

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=97.27  E-value=0.0003  Score=75.85  Aligned_cols=91  Identities=10%  Similarity=0.003  Sum_probs=66.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcC--------------ce-ecCHHHHhccCcEEEEcC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG--------------YE-VTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G--------------~~-v~~Leell~~aDiIi~at  411 (718)
                      .-++|+|||.|.+|..+|..|...|.+|.++++++.........|              .. ..+++++++.+|+|+++.
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaV  107 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVV  107 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECC
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECC
Confidence            347899999999999999999999999999999875432222212              12 247889999999999987


Q ss_pred             CCCCC--cCHHHHhcCCCCeEEEEcCCC
Q psy7896         412 GCKDI--IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       412 gt~~l--I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....+  +-.+....++++.+++++.-|
T Consensus       108 p~~~~~~vl~~i~~~l~~~~ivvs~~kG  135 (356)
T 3k96_A          108 PSFAFHEVITRMKPLIDAKTRIAWGTKG  135 (356)
T ss_dssp             CHHHHHHHHHHHGGGCCTTCEEEECCCS
T ss_pred             CHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            65322  112233467889999998765

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=97.25  E-value=0.00052  Score=73.46  Aligned_cols=91  Identities=21%  Similarity=0.251  Sum_probs=69.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCce-e---cC---HHHHhccCcEEEEcCCCCCCcC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYE-V---TT---MEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~-v---~~---Leell~~aDiIi~atgt~~lI~  418 (718)
                      .|++|.|+|.|.||..+++.++.+|++|++++.++.+...+. ..|.. +   .+   +.++....|+++.+++....+ 
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~~-  265 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHPL-  265 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCCS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHHH-
Confidence            799999999999999999999999999999988776543333 34542 1   12   223334679999988765433 


Q ss_pred             HHHHhcCCCCeEEEEcCCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ...++.|+++..++++|...
T Consensus       266 ~~~~~~l~~~G~iv~~g~~~  285 (366)
T 1yqd_A          266 LPLFGLLKSHGKLILVGAPE  285 (366)
T ss_dssp             HHHHHHEEEEEEEEECCCCS
T ss_pred             HHHHHHHhcCCEEEEEccCC
Confidence            56789999999999998754

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.25  E-value=0.00035  Score=72.82  Aligned_cols=90  Identities=13%  Similarity=0.066  Sum_probs=67.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCC----CCcCHHHHh
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCK----DIIRGEHFL  423 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~----~lI~~e~l~  423 (718)
                      ||+++|+|.|.+|++++..|...|.+|+++++++.++.+....|....+++++- ++|+||.+|+.-    ..++.+.+.
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~-~~DiVInaTp~Gm~~~~~l~~~~l~  196 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKS-AFDLIINATSASLHNELPLNKEVLK  196 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSS-CCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhc-cCCEEEEcccCCCCCCCCCChHHHH
Confidence            899999999999999999999999999999999876543223455555555544 899999876431    145555333


Q ss_pred             -cCCCCeEEEEcCCCC
Q psy7896         424 -QMRDDAIVCNIGHFD  438 (718)
Q Consensus       424 -~MK~gAiLIN~GRgd  438 (718)
                       .++++.+++++...+
T Consensus       197 ~~l~~~~~v~D~vY~P  212 (269)
T 3phh_A          197 GYFKEGKLAYDLAYGF  212 (269)
T ss_dssp             HHHHHCSEEEESCCSS
T ss_pred             hhCCCCCEEEEeCCCC
Confidence             567888888887764

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.24  E-value=0.0014  Score=69.59  Aligned_cols=98  Identities=22%  Similarity=0.240  Sum_probs=70.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CC-CEEEEEecCCccHHHHhh----c--CceecCHHHHhccCcEEEEcCCCC-CCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FG-SRVIVTEIDPINALQASM----E--GYEVTTMEEAAKEGGIFVTTTGCK-DII  417 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fG-a~Viv~d~dp~~al~a~~----~--G~~v~~Leell~~aDiIi~atgt~-~lI  417 (718)
                      ..++++|||.|.+|+..++.+.. .+ -+|.++++++.++.....    .  ...+.++++++ ++|+|+++|.+. .++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~~pv~  202 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSRKPVV  202 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCSSCCB
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCCCcee
Confidence            57899999999999999998876 44 479999998865432211    1  12256789999 999999987653 345


Q ss_pred             CHHHHhcCCCCeEEEEcCCC---CccccHHHHhc
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDK  448 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~  448 (718)
                      ..   +.+++|..++++|-.   ..|++.+.+..
T Consensus       203 ~~---~~l~~G~~V~~ig~~~p~~~el~~~~~~~  233 (322)
T 1omo_A          203 KA---EWVEEGTHINAIGADGPGKQELDVEILKK  233 (322)
T ss_dssp             CG---GGCCTTCEEEECSCCSTTCCCBCHHHHHT
T ss_pred             cH---HHcCCCeEEEECCCCCCCccccCHHHHhc
Confidence            43   468999999999754   24566554443

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=97.22  E-value=0.00059  Score=68.01  Aligned_cols=87  Identities=14%  Similarity=0.174  Sum_probs=61.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEE-EecCCccHHHH-hhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHHhcC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIV-TEIDPINALQA-SMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQM  425 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv-~d~dp~~al~a-~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l~~M  425 (718)
                      ++|+|||+|++|..+|+.+...|.+|++ +++++.+.... ...|.. ..+..+.++++|+|++++....+  .+.+..+
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~~~~--~~v~~~l  101 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPYDSI--ADIVTQV  101 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCGGGH--HHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCChHHH--HHHHHHh
Confidence            6899999999999999999999999998 88888654332 122432 23455668899999998754321  2333333


Q ss_pred             --CCCeEEEEcCCC
Q psy7896         426 --RDDAIVCNIGHF  437 (718)
Q Consensus       426 --K~gAiLIN~GRg  437 (718)
                        .++.++++++-+
T Consensus       102 ~~~~~~ivi~~~~g  115 (220)
T 4huj_A          102 SDWGGQIVVDASNA  115 (220)
T ss_dssp             SCCTTCEEEECCCC
T ss_pred             hccCCCEEEEcCCC
Confidence              247788888765

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.21  E-value=0.00059  Score=72.01  Aligned_cols=87  Identities=23%  Similarity=0.196  Sum_probs=64.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcC-----------ce-ecCHHHHhccCcEEEEcCCCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG-----------YE-VTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G-----------~~-v~~Leell~~aDiIi~atgt~~  415 (718)
                      ..+|+|||.|++|..+|..|..-|.+|+++++++.+.......|           .. ..+.++ ++.+|+|+++..+..
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~~~   92 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPVQY   92 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCGGG
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCHHH
Confidence            46899999999999999999999999999998875433222233           23 345777 889999999876532


Q ss_pred             CcCHHHHhcCC-CCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMR-DDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK-~gAiLIN~GRg  437 (718)
                        -.+.+..++ ++.++|++.-+
T Consensus        93 --~~~v~~~l~~~~~~vv~~~nG  113 (335)
T 1z82_A           93 --IREHLLRLPVKPSMVLNLSKG  113 (335)
T ss_dssp             --HHHHHTTCSSCCSEEEECCCC
T ss_pred             --HHHHHHHhCcCCCEEEEEeCC
Confidence              234455565 68889988754

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.21  E-value=0.001  Score=69.74  Aligned_cols=90  Identities=13%  Similarity=0.159  Sum_probs=61.9

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceecCHHHH--hccCcEEEEcCCC--CC--
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVTTMEEA--AKEGGIFVTTTGC--KD--  415 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~~Leel--l~~aDiIi~atgt--~~--  415 (718)
                      +.++.|+++.|+|.|.+|++++..|...|+ +|+++++++.++.+ ....+...+++++  + ++|+||.+|+.  ..  
T Consensus       117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~-La~~~~~~~~~~l~~l-~~DivInaTp~Gm~~~~  194 (282)
T 3fbt_A          117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSE-IYGEFKVISYDELSNL-KGDVIINCTPKGMYPKE  194 (282)
T ss_dssp             TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHH-HCTTSEEEEHHHHTTC-CCSEEEECSSTTSTTST
T ss_pred             CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH-HHHhcCcccHHHHHhc-cCCEEEECCccCccCCC
Confidence            345789999999999999999999999999 89999988865432 2233333444443  4 89999988743  11  


Q ss_pred             ---CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 ---IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 ---lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                         .+..   +.++++.+++++...
T Consensus       195 ~~~pi~~---~~l~~~~~v~DlvY~  216 (282)
T 3fbt_A          195 GESPVDK---EVVAKFSSAVDLIYN  216 (282)
T ss_dssp             TCCSSCH---HHHTTCSEEEESCCS
T ss_pred             ccCCCCH---HHcCCCCEEEEEeeC
Confidence               1332   234566666666554

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.18  E-value=0.0082  Score=63.53  Aligned_cols=170  Identities=19%  Similarity=0.078  Sum_probs=114.4

Q ss_pred             cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcc
Q psy7896         250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGV  329 (718)
Q Consensus       250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv  329 (718)
                      |-+||+.|.+.--.. +  . -+.|+... ..-.+...++--+++|++...+...=.|+.++-|.+-+            
T Consensus        85 ~kgEsl~DTarvls~-~--~-D~iviR~~-~~~~~~~la~~~~vPVINa~~~~~HPtQaLaDl~Ti~e------------  147 (301)
T 2ef0_A           85 GEREPVRDVAKNLER-F--V-EGIAARVF-RHETVEALARHAKVPVVNALSDRAHPLQALADLLTLKE------------  147 (301)
T ss_dssp             TTCCCHHHHHHHHTT-T--C-SEEEEECS-SHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHH------------
T ss_pred             CCCCchHHHHHHHHH-h--C-CEEEEecC-ChHHHHHHHHHCCCCEEeCCCCccCchHHHHHHHHHHH------------
Confidence            567998886654222 1  2 34444432 22233334455568999988777777778777766532            


Q ss_pred             cccccchhhhhhhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCce-ecCHHHHhccCc
Q psy7896         330 KLTKLTEDQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYE-VTTMEEAAKEGG  405 (718)
Q Consensus       330 ~~~~~~~~~~~~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~-v~~Leell~~aD  405 (718)
                                 ..| .+.|++|++||- +++.+..+..+..||++|.++-+..........  ..+. ..+++|+++++|
T Consensus       148 -----------~~g-~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aD  215 (301)
T 2ef0_A          148 -----------VFG-GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAH  215 (301)
T ss_dssp             -----------HHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCS
T ss_pred             -----------HhC-CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCC
Confidence                       112 588999999998 789999999999999999998543322111110  0133 568999999999


Q ss_pred             EEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         406 IFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       406 iIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      +|.+..    +            ...-++.+.++.+|+++++.-++-.  +.||+.+-+..
T Consensus       216 vvy~~~~~smg~~~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~eV~d~  276 (301)
T 2ef0_A          216 ALYTDVWTSMGQEAEREKRLRDFQGFQVNGELLKLLRPEGVFLHCLPAHYGEETTEEAVHG  276 (301)
T ss_dssp             EEEECCCC--------CHHHHHTTTCCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHHS
T ss_pred             EEEecCcccCCcccchhHHHHHhhccccCHHHHHhcCCCcEEECCCCCCCCCccCHHHhCC
Confidence            999831    1            1345899999999999999999853  35888665543

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.17  E-value=0.0015  Score=69.54  Aligned_cols=95  Identities=17%  Similarity=0.158  Sum_probs=63.3

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecC---CccHHHHh-----hcC--ceec---C---HHHHhccCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEID---PINALQAS-----MEG--YEVT---T---MEEAAKEGG  405 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~d---p~~al~a~-----~~G--~~v~---~---Leell~~aD  405 (718)
                      +.+++||++.|+|.|.+|++++..|...|+ +|++++++   +.++.+..     ..+  +...   +   +.+.++++|
T Consensus       149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD  228 (315)
T 3tnl_A          149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV  228 (315)
T ss_dssp             TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence            456789999999999999999999999999 89999988   43332111     112  1222   2   456678999


Q ss_pred             EEEEcCCCCCCcCH---H---HHhcCCCCeEEEEcCCCC
Q psy7896         406 IFVTTTGCKDIIRG---E---HFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       406 iIi~atgt~~lI~~---e---~l~~MK~gAiLIN~GRgd  438 (718)
                      +||.+|+- ++...   .   ..+.++++.+++++-..+
T Consensus       229 iIINaTp~-Gm~~~~~~~p~~~~~~l~~~~~V~DlvY~P  266 (315)
T 3tnl_A          229 IFTNATGV-GMKPFEGETLLPSADMLRPELIVSDVVYKP  266 (315)
T ss_dssp             EEEECSST-TSTTSTTCCSCCCGGGCCTTCEEEESCCSS
T ss_pred             EEEECccC-CCCCCCCCCCCCcHHHcCCCCEEEEeccCC
Confidence            99988642 11110   0   234467777777766543

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.17  E-value=0.0013  Score=72.92  Aligned_cols=106  Identities=21%  Similarity=0.149  Sum_probs=80.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEe----cC--CccH-----HH------HhhcCc--eecCHHHH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTE----ID--PINA-----LQ------ASMEGY--EVTTMEEA  400 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d----~d--p~~a-----l~------a~~~G~--~v~~Leel  400 (718)
                      |..+.+++|.|+|.|..|+++++.|...|+   +|+++|    ++  ..+.     +.      +.....  ...++.++
T Consensus       181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~  260 (439)
T 2dvm_A          181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA  260 (439)
T ss_dssp             TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence            567899999999999999999999999998   799998    65  2111     11      000111  23468899


Q ss_pred             hccCcEEEEcCCC-CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         401 AKEGGIFVTTTGC-KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       401 l~~aDiIi~atgt-~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++.+|+||.+|+. .++++.+.++.|+++.+++..+.-..|+.++...+
T Consensus       261 l~~aDVlInaT~~~~G~~~~e~v~~m~~~~iVfDLynP~~t~~~~~A~~  309 (439)
T 2dvm_A          261 LKDADVLISFTRPGPGVIKPQWIEKMNEDAIVFPLANPVPEILPEEAKK  309 (439)
T ss_dssp             HTTCSEEEECSCCCSSSSCHHHHTTSCTTCEEEECCSSSCSSCHHHHHH
T ss_pred             hccCCEEEEcCCCccCCCChHHHHhcCCCCEEEECCCCCCcchHHHHHH
Confidence            9999999998876 48999888899999999999965444566654444

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=97.15  E-value=0.00054  Score=72.40  Aligned_cols=90  Identities=14%  Similarity=0.062  Sum_probs=63.6

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCC-------CEEEEEecCCc-----cHHHHhh--------------cCce-ecCHHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFG-------SRVIVTEIDPI-----NALQASM--------------EGYE-VTTMEEA  400 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fG-------a~Viv~d~dp~-----~al~a~~--------------~G~~-v~~Leel  400 (718)
                      .++|+|||.|.+|..+|..+...|       .+|+++++++.     .......              .+.. ..+++++
T Consensus         8 ~mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (354)
T 1x0v_A            8 SKKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQA   87 (354)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHH
Confidence            468999999999999999998878       89999998876     3222111              1222 2468888


Q ss_pred             hccCcEEEEcCCCCCCc--CHHHHhcCCCCeEEEEcCCC
Q psy7896         401 AKEGGIFVTTTGCKDII--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       401 l~~aDiIi~atgt~~lI--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++.+|+|+++.....+-  -.+....++++++++++..+
T Consensus        88 ~~~aD~Vilav~~~~~~~v~~~i~~~l~~~~ivv~~~~G  126 (354)
T 1x0v_A           88 AEDADILIFVVPHQFIGKICDQLKGHLKANATGISLIKG  126 (354)
T ss_dssp             HTTCSEEEECCCGGGHHHHHHHHTTCSCTTCEEEECCCC
T ss_pred             HcCCCEEEEeCCHHHHHHHHHHHHhhCCCCCEEEEECCc
Confidence            99999999987653221  11222456789999988764

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.14  E-value=0.00062  Score=70.91  Aligned_cols=93  Identities=14%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh--hc--CceecCHHHHh-ccCcEEEEcCCCC--
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS--ME--GYEVTTMEEAA-KEGGIFVTTTGCK--  414 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~--~~--G~~v~~Leell-~~aDiIi~atgt~--  414 (718)
                      +.+++||++.|+|.|.+|+.++..|...|+ +|+++++++.++.+..  ..  .....+++++- +++|+||.+|+..  
T Consensus       115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~  194 (272)
T 3pwz_A          115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT  194 (272)
T ss_dssp             CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred             CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence            557899999999999999999999999996 9999998876543211  11  13445566654 6899999886531  


Q ss_pred             ---CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 ---DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ---~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                         -.+..   +.++++.+++++...+
T Consensus       195 ~~~~~i~~---~~l~~~~~V~DlvY~P  218 (272)
T 3pwz_A          195 ADLPPLPA---DVLGEAALAYELAYGK  218 (272)
T ss_dssp             TCCCCCCG---GGGTTCSEEEESSCSC
T ss_pred             CCCCCCCH---HHhCcCCEEEEeecCC
Confidence               12332   3456777777776543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.12  E-value=0.00052  Score=71.28  Aligned_cols=94  Identities=17%  Similarity=0.123  Sum_probs=63.1

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh---c--------CceecCHHHHhccCcEEEEcC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM---E--------GYEVTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~---~--------G~~v~~Leell~~aDiIi~at  411 (718)
                      +.++.||++.|+|.|.||+++|+.|...| +|+++++++.+..+...   .        ...+.++.+.+..+|++|.++
T Consensus       123 ~~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~a  201 (287)
T 1nvt_A          123 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT  201 (287)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECC
Confidence            35688999999999999999999999999 99999887654321110   0        012333355667899999887


Q ss_pred             CCCCC--cCHH---HHhcCCCCeEEEEcCCC
Q psy7896         412 GCKDI--IRGE---HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       412 gt~~l--I~~e---~l~~MK~gAiLIN~GRg  437 (718)
                      +....  .+..   ..+.++++++++++...
T Consensus       202 g~~~~~~~~~~~~~~~~~l~~~~~v~Dv~y~  232 (287)
T 1nvt_A          202 PIGMYPNIDVEPIVKAEKLREDMVVMDLIYN  232 (287)
T ss_dssp             CTTCTTCCSSCCSSCSTTCCSSSEEEECCCS
T ss_pred             CCCCCCCCCCCCCCCHHHcCCCCEEEEeeeC
Confidence            64221  0000   13456778888877653

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.11  E-value=0.0082  Score=63.71  Aligned_cols=170  Identities=20%  Similarity=0.094  Sum_probs=114.2

Q ss_pred             cchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcc
Q psy7896         250 GCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGV  329 (718)
Q Consensus       250 G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv  329 (718)
                      |-+||+.|...--.. +   --+.|+.. +-.-.+..+++--+++|++...+...=.|+.++-|.+-+            
T Consensus        79 ~kgEsl~DTarvls~-~---~D~iviR~-~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e------------  141 (307)
T 2i6u_A           79 GRDETLQDTAKVLSR-Y---VDAIVWRT-FGQERLDAMASVATVPVINALSDEFHPCQVLADLQTIAE------------  141 (307)
T ss_dssp             GGTCCHHHHHHHHHH-H---EEEEEEEC-SSHHHHHHHHHHCSSCEEESCCSSCCHHHHHHHHHHHHH------------
T ss_pred             CCCCCHHHHHHHHHH-h---CCEEEEec-CChhHHHHHHhhCCCCEEcCCCCCcCccHHHHHHHHHHH------------
Confidence            567998876653222 1   13444443 323333444455668999887766666777777666532            


Q ss_pred             cccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcC--ce-ec
Q psy7896         330 KLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEG--YE-VT  395 (718)
Q Consensus       330 ~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G--~~-v~  395 (718)
                                 ..| .+.|++|++||-|  ++....+..+..||++|.++-+....   .. +     +...|  +. ..
T Consensus       142 -----------~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~  209 (307)
T 2i6u_A          142 -----------RKG-ALRGLRLSYFGDGANNMAHSLLLGGVTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTA  209 (307)
T ss_dssp             -----------HHS-CCTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred             -----------HhC-CcCCeEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEE
Confidence                       112 5889999999996  99999999999999999998543221   11 1     11235  22 46


Q ss_pred             CHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         396 TMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       396 ~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      +++|+++.+|+|.+..    |            ...-++.+.++.+|+++++.-++-.  +.||+.+-+..
T Consensus       210 d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~eV~d~  280 (307)
T 2i6u_A          210 DAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLLALADSDAIVLHCLPAHRGDEITDAVMDG  280 (307)
T ss_dssp             CHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHHHHTS
T ss_pred             CHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHHhhcCCCcEEECCCCCCCCcccCHhHhCC
Confidence            7999999999999831    1            1235899999999999999999863  35787665443

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.11  E-value=0.001  Score=62.09  Aligned_cols=87  Identities=14%  Similarity=0.079  Sum_probs=56.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc---HHH-HhhcCceec--------CHHHH-hccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN---ALQ-ASMEGYEVT--------TMEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~---al~-a~~~G~~v~--------~Leel-l~~aDiIi~atgt  413 (718)
                      ..+++.|+|+|++|+.+++.|...|.+|+++|+++..   .+. ....|+.+.        .++++ +..+|.|+.++++
T Consensus         2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~   81 (153)
T 1id1_A            2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence            3578999999999999999999999999999987521   111 122344321        24444 6789998888765


Q ss_pred             C--CCcCHHHHhcCCCCeEEEE
Q psy7896         414 K--DIIRGEHFLQMRDDAIVCN  433 (718)
Q Consensus       414 ~--~lI~~e~l~~MK~gAiLIN  433 (718)
                      .  ++.-......+.+...++.
T Consensus        82 d~~n~~~~~~a~~~~~~~~ii~  103 (153)
T 1id1_A           82 DADNAFVVLSAKDMSSDVKTVL  103 (153)
T ss_dssp             HHHHHHHHHHHHHHTSSSCEEE
T ss_pred             hHHHHHHHHHHHHHCCCCEEEE
Confidence            3  2222233444534444444

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=97.09  E-value=0.00083  Score=75.15  Aligned_cols=89  Identities=17%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-------C-------------ce-ecCHHHHhccCcE
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-------G-------------YE-VTTMEEAAKEGGI  406 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-------G-------------~~-v~~Leell~~aDi  406 (718)
                      .++|+|||.|.+|..+|..|...|.+|+++|+++.+.......       |             .. ..+++++++.+|+
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv   87 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV   87 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence            4799999999999999999999999999999987543221111       1             12 2357788899999


Q ss_pred             EEEcCCCC----------CC--cCHHHHhcCCCCeEEEEcCC
Q psy7896         407 FVTTTGCK----------DI--IRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       407 Ii~atgt~----------~l--I~~e~l~~MK~gAiLIN~GR  436 (718)
                      |+++.++.          .+  +-.+....++++.++++.+-
T Consensus        88 viiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~ST  129 (478)
T 2y0c_A           88 QFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKST  129 (478)
T ss_dssp             EEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence            99986552          11  11222356899999999874

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=97.09  E-value=0.00072  Score=73.80  Aligned_cols=86  Identities=20%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc------------------e-ecCHHHHhccCcEEEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY------------------E-VTTMEEAAKEGGIFVT  409 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~------------------~-v~~Leell~~aDiIi~  409 (718)
                      ++|+|||.|.+|..+|..|.. |.+|+++|+++.+.......+.                  . ..+..++++.+|+|++
T Consensus         1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii   79 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII   79 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence            479999999999999999998 9999999998764332222221                  2 2357788899999999


Q ss_pred             cCCCCC-----------CcC--HHHHhcCCCCeEEEEcCC
Q psy7896         410 TTGCKD-----------IIR--GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       410 atgt~~-----------lI~--~e~l~~MK~gAiLIN~GR  436 (718)
                      +.++..           +..  ..... ++++.++|+.+.
T Consensus        80 avpt~~~~~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST  118 (402)
T 1dlj_A           80 ATPTNYNSRINYFDTQHVETVIKEVLS-VNSHATLIIKST  118 (402)
T ss_dssp             CCCCCEETTTTEECCHHHHHHHHHHHH-HCSSCEEEECSC
T ss_pred             ecCCCcccCCCCccHHHHHHHHHHHHh-hCCCCEEEEeCC
Confidence            876641           111  12234 789999998544

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.09  E-value=0.011  Score=62.96  Aligned_cols=171  Identities=16%  Similarity=0.094  Sum_probs=115.7

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+.|.+.--.. +  . -+.|+.. +-.-.+...++--+++|++...+...=.|+.++-|.+-+           
T Consensus        85 ~~kgEsl~DTarvls~-~--~-D~iviR~-~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e-----------  148 (315)
T 1pvv_A           85 LRRGETIADTARVLSR-Y--V-DAIMARV-YDHKDVEDLAKYATVPVINGLSDFSHPCQALADYMTIWE-----------  148 (315)
T ss_dssp             TTTTCCHHHHHHHHTT-T--C-SEEEEEC-SSHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHH-----------
T ss_pred             CCCCcCHHHHHHHHHH-h--C-cEEEEec-CchHHHHHHHHhCCCCEEcCCCCCCCcHHHHHHHHHHHH-----------
Confidence            3567998886654222 1  2 2444443 323333444455569999988776666777777766532           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCce---ec
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGYE---VT  395 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~~---v~  395 (718)
                                  ..| .+.|++|++||- +++.+..+..+..||++|.++-+....   .. +     +...|..   ..
T Consensus       149 ------------~~g-~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~  215 (315)
T 1pvv_A          149 ------------KKG-TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLH  215 (315)
T ss_dssp             ------------HHS-CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEES
T ss_pred             ------------HhC-CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEe
Confidence                        112 588999999998 789999999999999999998543221   11 1     1133532   46


Q ss_pred             CHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         396 TMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       396 ~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      +++|+++++|+|.+..    |            ...-++.+.++.+|+++++.-++-.  +.||+.+-+..
T Consensus       216 d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~eV~d~  286 (315)
T 1pvv_A          216 DPVKAVKDADVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDS  286 (315)
T ss_dssp             CHHHHTTTCSEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTS
T ss_pred             CHHHHhCCCCEEEEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHHHhCC
Confidence            7999999999999841    1            1245899999999999999999863  35888665543

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=97.08  E-value=0.00061  Score=69.28  Aligned_cols=89  Identities=12%  Similarity=0.031  Sum_probs=60.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh---cCc----e-ecCHHHHhccCcEEEEcCCCCCCcC--
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM---EGY----E-VTTMEEAAKEGGIFVTTTGCKDIIR--  418 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~---~G~----~-v~~Leell~~aDiIi~atgt~~lI~--  418 (718)
                      ++|+|||.|.+|..+|..|...|.+|+++++++.+......   .|.    . ..+..+.++.+|+|+++.....+-.  
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~~~~~v~   80 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHHhHHHHH
Confidence            47999999999999999999999999999988753211111   121    0 1233467789999999877654310  


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+....++++.+++++.-+
T Consensus        81 ~~l~~~l~~~~~vv~~~~g   99 (291)
T 1ks9_A           81 KSLASTLPVTTPILLIHNG   99 (291)
T ss_dssp             HHHHTTSCTTSCEEEECSS
T ss_pred             HHHHhhCCCCCEEEEecCC
Confidence            1223456788888887544

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.08  E-value=0.0013  Score=67.72  Aligned_cols=89  Identities=17%  Similarity=0.228  Sum_probs=65.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhc-C-ceecCHHHHhccCcEEEEcCCC--C---CC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASME-G-YEVTTMEEAAKEGGIFVTTTGC--K---DI  416 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~-G-~~v~~Leell~~aDiIi~atgt--~---~l  416 (718)
                      .++| +++|||.|.+|++++..|...|+ +|+++++++.++.+.... + ....++.++++++|+||.+|..  +   ..
T Consensus       106 ~~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~~~  184 (253)
T 3u62_A          106 EVKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEELP  184 (253)
T ss_dssp             CCCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCCCS
T ss_pred             CCCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCCCC
Confidence            4678 99999999999999999999999 899999987654322111 1 2344677888999999987642  1   13


Q ss_pred             cCHHHHhcCCCCeEEEEcCCC
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++.   +.++++.+++++...
T Consensus       185 i~~---~~l~~~~~V~Divy~  202 (253)
T 3u62_A          185 VSD---DSLKNLSLVYDVIYF  202 (253)
T ss_dssp             CCH---HHHTTCSEEEECSSS
T ss_pred             CCH---HHhCcCCEEEEeeCC
Confidence            443   335788888888776

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.07  E-value=0.0011  Score=69.43  Aligned_cols=93  Identities=17%  Similarity=0.117  Sum_probs=65.1

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh---h---cCce--e---cCHHHHhccCcEEEEc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS---M---EGYE--V---TTMEEAAKEGGIFVTT  410 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~---~---~G~~--v---~~Leell~~aDiIi~a  410 (718)
                      +..++||++.|+|.|.+|+.++..|...|+ +|+++++++.++.+..   .   .+..  .   .++++.++++|+||.+
T Consensus       122 ~~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVIna  201 (283)
T 3jyo_A          122 LPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNA  201 (283)
T ss_dssp             CTTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEEC
T ss_pred             CcCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEEC
Confidence            346899999999999999999999999999 7999998876542211   0   0111  2   2677888999999988


Q ss_pred             CCC--CC----CcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         411 TGC--KD----IIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       411 tgt--~~----lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      |+.  ..    .+.   .+.++++.+++++-..+
T Consensus       202 Tp~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P  232 (283)
T 3jyo_A          202 TPMGMPAHPGTAFD---VSCLTKDHWVGDVVYMP  232 (283)
T ss_dssp             SSTTSTTSCSCSSC---GGGCCTTCEEEECCCSS
T ss_pred             CCCCCCCCCCCCCC---HHHhCCCCEEEEecCCC
Confidence            742  11    122   24466777777665543

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=97.07  E-value=0.0017  Score=72.20  Aligned_cols=90  Identities=16%  Similarity=0.228  Sum_probs=67.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-------------------cC-cee-cCHHHHhccCcE
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-------------------EG-YEV-TTMEEAAKEGGI  406 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-------------------~G-~~v-~~Leell~~aDi  406 (718)
                      .-+++|||.|.+|..+|..|...|.+|+++|+++.+......                   .| ..+ .++.+++++||+
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDv   87 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADA   87 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSE
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCE
Confidence            358999999999999999999999999999999875322211                   12 233 578899999999


Q ss_pred             EEEcCCCCC-----------Cc--CHHHHhcCCCCeEEEEcCCC
Q psy7896         407 FVTTTGCKD-----------II--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       407 Ii~atgt~~-----------lI--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      |+++.+|..           +.  -......|+++.++|+.+-.
T Consensus        88 vii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv  131 (446)
T 4a7p_A           88 VFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTV  131 (446)
T ss_dssp             EEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCC
T ss_pred             EEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCC
Confidence            999854431           11  12334689999999998753

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.07  E-value=0.0089  Score=63.91  Aligned_cols=185  Identities=15%  Similarity=0.114  Sum_probs=121.6

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+-=++..+.+.+      ..|-+||+.|.+.--.. +  . -+.|+.. +..-.+..+++--+++|++...+...=.|+
T Consensus        83 LGg~~i~l~~~~s------s~~kgEsl~DTarvLs~-~--~-D~iviR~-~~~~~~~~lA~~~~vPVINa~~~~~HPtQa  151 (325)
T 1vlv_A           83 EGGHPIFLSPNDI------HLGAKESLEDTARVLGR-M--V-DAIMFRG-YKQETVEKLAEYSGVPVYNGLTDEFHPTQA  151 (325)
T ss_dssp             TTCEEEEECTTTC------CTTTSSCHHHHHHHHHT-T--C-SEEEEES-SCHHHHHHHHHHHCSCEEESCCSSCCHHHH
T ss_pred             cCCeEEEECCccc------cCCCCcCHHHHHHHHHH-h--C-CEEEEEC-CChHHHHHHHHhCCCCEEeCCCCCCCcHHH
Confidence            4555666654422      23567998886653222 1  2 2444443 333333444555679999987776666777


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---  383 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---  383 (718)
                      +++-|.+-+                       ..| .+.|++|++||-|  ++....+..+..||++|.++-+....   
T Consensus       152 LaDl~Ti~e-----------------------~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~  207 (325)
T 1vlv_A          152 LADLMTIEE-----------------------NFG-RLKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRS  207 (325)
T ss_dssp             HHHHHHHHH-----------------------HHS-CSTTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCH
T ss_pred             HHHHHHHHH-----------------------HhC-CcCCcEEEEECCCCcCcHHHHHHHHHHCCCEEEEECCccccCCH
Confidence            777666532                       112 5889999999996  99999999999999999998542221   


Q ss_pred             HH-H-----HhhcCce---ecCHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896         384 AL-Q-----ASMEGYE---VTTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQM-RDDAIVCNIGHF  437 (718)
Q Consensus       384 al-~-----a~~~G~~---v~~Leell~~aDiIi~at----g------------t~~lI~~e~l~~M-K~gAiLIN~GRg  437 (718)
                      .. +     +...|..   ..+++|+++++|+|.+..    |            ...-++.+.++.+ |+++++.-++-.
T Consensus       208 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~  287 (325)
T 1vlv_A          208 DVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPA  287 (325)
T ss_dssp             HHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCC
Confidence            11 1     1133532   457999999999999831    1            1245899999999 999999999863


Q ss_pred             --CccccHHHHhc
Q psy7896         438 --DCEIQVSWLDK  448 (718)
Q Consensus       438 --d~Eid~~aL~~  448 (718)
                        +.||+.+-+..
T Consensus       288 ~Rg~EI~~eV~d~  300 (325)
T 1vlv_A          288 VKGQEVTYEVIEG  300 (325)
T ss_dssp             CBTTTBCHHHHTS
T ss_pred             CCCcccCHHHhCC
Confidence              35787665443

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.06  E-value=0.0006  Score=69.25  Aligned_cols=92  Identities=14%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hc-Cceec--C-HHHHhccCcEEEEcCCCCCCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-ME-GYEVT--T-MEEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~-G~~v~--~-Leell~~aDiIi~atgt~~lI  417 (718)
                      ..++.||+|.|||.|.+|...++.|...|++|++++++....++.. .. +..+.  + -++.+..+|+|+.+|+.. -+
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~-~~  104 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQ-AV  104 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCT-HH
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCH-HH
Confidence            3579999999999999999999999999999999987655443322 12 22221  1 134577899999999875 44


Q ss_pred             CHHHHhcCCCCeEEEEcCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GR  436 (718)
                      |.......+ -.++||+..
T Consensus       105 N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A          105 NKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             HHHHHHHSC-TTCEEEC--
T ss_pred             HHHHHHHHh-CCCEEEEeC
Confidence            555555556 667888754

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.04  E-value=0.01  Score=63.78  Aligned_cols=175  Identities=16%  Similarity=0.075  Sum_probs=116.3

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+--++..+.+.+      ..|-+||+.|...--.. +  .. +.|+. ++---.+...++--+++|++...+...=.|+
T Consensus        70 LGg~~i~l~~~~s------s~~kgEsl~DTarvLs~-~--~D-~IviR-~~~~~~~~~lA~~s~vPVINa~~~~~HPtQ~  138 (335)
T 1dxh_A           70 QGANVTYIDPNSS------QIGHKESMKDTARVLGR-M--YD-AIEYR-GFKQEIVEELAKFAGVPVFNGLTDEYHPTQM  138 (335)
T ss_dssp             TTCEEEEECTTTC------CBTTTBCHHHHHHHHHH-H--CS-EEEEE-CSCHHHHHHHHHHSSSCEEEEECSSCCHHHH
T ss_pred             cCCeEEEECCccc------cCcCCCcHHHHHHHHHh-h--CC-EEEEe-cCChhHHHHHHHhCCCCEEcCCCCCCCcHHH
Confidence            4445666654422      23667998876653222 2  22 33333 2333334445556679999988777777777


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---  383 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---  383 (718)
                      .++-|.+.+                       ..|..+.|++|++||=|  +++...+..+..||++|.++-+....   
T Consensus       139 LaDl~Ti~e-----------------------~~g~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~~  195 (335)
T 1dxh_A          139 LADVLTMRE-----------------------HSDKPLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHD  195 (335)
T ss_dssp             HHHHHHHHH-----------------------TCSSCGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCH
T ss_pred             HHHHHHHHH-----------------------HcCCCcCCeEEEEecCCccchHHHHHHHHHHcCCEEEEECCcccCCCH
Confidence            777665532                       12336889999999996  99999999999999999998543221   


Q ss_pred             HH-H-----HhhcCce---ecCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCC
Q psy7896         384 AL-Q-----ASMEGYE---VTTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGH  436 (718)
Q Consensus       384 al-~-----a~~~G~~---v~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GR  436 (718)
                      .. +     +...|..   ..+++|+++.+|||.+..    |             ...-+|.+.++.+ |+++++.-+.-
T Consensus       196 ~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcLP  275 (335)
T 1dxh_A          196 EFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  275 (335)
T ss_dssp             HHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             HHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCCC
Confidence            11 1     1133532   468999999999999831    1             1246899999999 99999999976


Q ss_pred             C
Q psy7896         437 F  437 (718)
Q Consensus       437 g  437 (718)
                      .
T Consensus       276 ~  276 (335)
T 1dxh_A          276 A  276 (335)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.02  E-value=0.0088  Score=63.27  Aligned_cols=185  Identities=17%  Similarity=0.122  Sum_probs=119.1

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEe-ecCchhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT-EIDPINALQ  307 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~-D~dp~r~v~  307 (718)
                      |+-=++..+++..-     ..|-+||+.|...--.. +  .. +.|+....-| .+...++--+++|++. +.+...=.|
T Consensus        63 LGg~~i~l~~~~~s-----~~~kgEsl~DTarvls~-~--~D-~iviR~~~~~-~~~~la~~~~vPVINaG~g~~~HPtQ  132 (299)
T 1pg5_A           63 LGGDVIGFSGEEST-----SVAKGENLADTIRMLNN-Y--SD-GIVMRHKYDG-ASRFASEISDIPVINAGDGKHEHPTQ  132 (299)
T ss_dssp             TTCEEEEEECC------------CCCHHHHHHHHHH-H--CS-EEEEEESSBT-HHHHHHHHCSSCEEEEEETTTBCHHH
T ss_pred             hCCEEEEeCCCCcc-----cccCCCCHHHHHHHHHH-h--CC-EEEEeCCChh-HHHHHHHhCCCCEEeCCCCCCcCcHH
Confidence            44445555433211     13567888776553222 2  22 4444433222 3344455667999998 888777778


Q ss_pred             hhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEec---ChhHHHHHHHHHhC-CCEEEEEecCCcc
Q psy7896         308 ASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGY---GDVGKGCAQSLRLF-GSRVIVTEIDPIN  383 (718)
Q Consensus       308 AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~---G~IG~~vA~~l~~f-Ga~Viv~d~dp~~  383 (718)
                      +.++-|.+.+                       ..| .+.|++|++||=   +++....+..+..| |++|.++-+....
T Consensus       133 ~LaDl~Ti~e-----------------------~~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~  188 (299)
T 1pg5_A          133 AVIDIYTINK-----------------------HFN-TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLR  188 (299)
T ss_dssp             HHHHHHHHHH-----------------------HHS-CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGC
T ss_pred             HHHHHHHHHH-----------------------HhC-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhc
Confidence            8888766532                       112 588999999998   59999999999999 9999998543221


Q ss_pred             HHH--HhhcCce---ecCHHHHhccCcEEEEcC--C----C---------CCCcCHHHHhcCCCCeEEEEcCCCCccccH
Q psy7896         384 ALQ--ASMEGYE---VTTMEEAAKEGGIFVTTT--G----C---------KDIIRGEHFLQMRDDAIVCNIGHFDCEIQV  443 (718)
Q Consensus       384 al~--a~~~G~~---v~~Leell~~aDiIi~at--g----t---------~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~  443 (718)
                      ...  ....|..   ..+++|+++.+|+|.+..  .    .         ..-+|.+.++.+|+++++.-++--+.||+.
T Consensus       189 ~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lPrg~EI~~  268 (299)
T 1pg5_A          189 ARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVNEIDR  268 (299)
T ss_dssp             CCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSSSBCG
T ss_pred             CCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCCCCCccCH
Confidence            111  1223433   357999999999999741  1    1         345899999999999999999865567775


Q ss_pred             HHHh
Q psy7896         444 SWLD  447 (718)
Q Consensus       444 ~aL~  447 (718)
                      +-+.
T Consensus       269 eV~d  272 (299)
T 1pg5_A          269 KVDK  272 (299)
T ss_dssp             GGGG
T ss_pred             HHhC
Confidence            5443

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=97.01  E-value=0.0021  Score=72.14  Aligned_cols=90  Identities=16%  Similarity=-0.017  Sum_probs=64.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC-CC-EEEEEecCCc----cHHHHhh---------------------cC-ceecCHHH
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF-GS-RVIVTEIDPI----NALQASM---------------------EG-YEVTTMEE  399 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f-Ga-~Viv~d~dp~----~al~a~~---------------------~G-~~v~~Lee  399 (718)
                      -++|+|||.|.+|..+|..+... |. +|+++|+++.    +......                     .| ..+.+-.+
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~e   97 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFS   97 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHH
Confidence            36899999999999999999999 99 9999999987    4221111                     12 22322267


Q ss_pred             HhccCcEEEEcCCCCCC------------c--CHHHHhcCCCCeEEEEcCCC
Q psy7896         400 AAKEGGIFVTTTGCKDI------------I--RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       400 ll~~aDiIi~atgt~~l------------I--~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++++||+|+++.++..-            .  .......|++|.++|+.+-.
T Consensus        98 a~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv  149 (478)
T 3g79_A           98 RISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTI  149 (478)
T ss_dssp             GGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCC
T ss_pred             HHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCC
Confidence            88999999998665421            1  12334679999999998754

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=96.99  E-value=0.0019  Score=68.54  Aligned_cols=94  Identities=16%  Similarity=0.155  Sum_probs=61.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecC---CccHHHHh-----hcCc--ee---cCH---HHHhccCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEID---PINALQAS-----MEGY--EV---TTM---EEAAKEGG  405 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~d---p~~al~a~-----~~G~--~v---~~L---eell~~aD  405 (718)
                      +..++||++.|+|.|.+|++++..|...|+ +|++++++   +.++.+..     ..+.  ..   .++   .+.++++|
T Consensus       143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D  222 (312)
T 3t4e_A          143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD  222 (312)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred             CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence            456789999999999999999999999999 89999988   43332211     1121  12   233   45678999


Q ss_pred             EEEEcCCCCCCc--CHH----HHhcCCCCeEEEEcCCC
Q psy7896         406 IFVTTTGCKDII--RGE----HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       406 iIi~atgt~~lI--~~e----~l~~MK~gAiLIN~GRg  437 (718)
                      +||.+|+- ++-  +..    ..+.++++.+++++-..
T Consensus       223 iIINaTp~-Gm~~~~~~~~~~~~~~l~~~~~v~D~vY~  259 (312)
T 3t4e_A          223 ILTNGTKV-GMKPLENESLIGDVSLLRPELLVTECVYN  259 (312)
T ss_dssp             EEEECSST-TSTTSTTCCSCCCGGGSCTTCEEEECCCS
T ss_pred             EEEECCcC-CCCCCCCCcccCCHHHcCCCCEEEEeccC
Confidence            99988653 120  000    12345566666665543

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.98  E-value=0.0022  Score=71.13  Aligned_cols=84  Identities=20%  Similarity=0.351  Sum_probs=60.7

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecC----------CccHHHHh-hcC-------ceecCHHHHhc
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEID----------PINALQAS-MEG-------YEVTTMEEAAK  402 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~d----------p~~al~a~-~~G-------~~v~~Leell~  402 (718)
                      .|.+++|++|.|.|+|++|+.+|+.|..+|++|+ +.|.+          +....+.. ..|       ....+-++++.
T Consensus       229 ~g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~  308 (440)
T 3aog_A          229 IGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWG  308 (440)
T ss_dssp             HTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTT
T ss_pred             cCCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhc
Confidence            4778999999999999999999999999999988 55542          11111111 111       24456667764


Q ss_pred             -cCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         403 -EGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       403 -~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                       .+||++.|+. .+.|+.+....++
T Consensus       309 ~~~DIlvPcA~-~n~i~~~na~~l~  332 (440)
T 3aog_A          309 LPVEFLVPAAL-EKQITEQNAWRIR  332 (440)
T ss_dssp             CCCSEEEECSS-SSCBCTTTGGGCC
T ss_pred             CCCcEEEecCC-cCccchhhHHHcC
Confidence             7999998754 4688888888884

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.97  E-value=0.00051  Score=73.35  Aligned_cols=94  Identities=14%  Similarity=0.157  Sum_probs=68.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC---ccHHHHhhcCceecC---HHHHh----ccCcEEEEcCCCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP---INALQASMEGYEVTT---MEEAA----KEGGIFVTTTGCK  414 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp---~~al~a~~~G~~v~~---Leell----~~aDiIi~atgt~  414 (718)
                      .+.|++|.|+|.|.||..+++.++.+|++|+++++++   .+...+...|...++   +.+.+    ...|+++.+++..
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~  257 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD  257 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence            3559999999999999999999999999999999877   543223333443221   11222    3479999988875


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ..+....++.|+++..++++|...
T Consensus       258 ~~~~~~~~~~l~~~G~iv~~g~~~  281 (366)
T 2cdc_A          258 VNILGNVIPLLGRNGVLGLFGFST  281 (366)
T ss_dssp             THHHHHHGGGEEEEEEEEECSCCC
T ss_pred             HHHHHHHHHHHhcCCEEEEEecCC
Confidence            433146788999999999998753

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=96.97  E-value=0.00025  Score=75.67  Aligned_cols=88  Identities=16%  Similarity=0.087  Sum_probs=61.7

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--------------Ccee-cCHHHHhccCcEEEEcCCCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME--------------GYEV-TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--------------G~~v-~~Leell~~aDiIi~atgt~  414 (718)
                      +|+|||.|.+|..+|..|...|.+|+++++++.........              +... .+++++++.+|+|+++....
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~~   96 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPTQ   96 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCHH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCChH
Confidence            89999999999999999999999999999887543222111              2222 46888899999999987643


Q ss_pred             CC---cCHH---HHhcCCC-CeEEEEcCCC
Q psy7896         415 DI---IRGE---HFLQMRD-DAIVCNIGHF  437 (718)
Q Consensus       415 ~l---I~~e---~l~~MK~-gAiLIN~GRg  437 (718)
                      .+   +...   ....+++ +.+++++..+
T Consensus        97 ~~~~v~~~~~~gl~~~l~~~~~ivv~~~~g  126 (366)
T 1evy_A           97 FLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  126 (366)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             HHHHHHHHhHHHHHHhcCccCCEEEEECCc
Confidence            21   1110   2233566 8888888654

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=96.97  E-value=0.01  Score=63.71  Aligned_cols=175  Identities=13%  Similarity=0.073  Sum_probs=116.1

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+-=++..+.+.+      ..|-+||+.|...--.. +  .. +.|+. ++---.+...++--+++|++...+...=.|+
T Consensus        69 LGg~~i~l~~~~s------s~~kgEsl~DTarvLs~-~--~D-~IviR-~~~~~~~~~lA~~~~vPVINa~~~~~HPtQ~  137 (333)
T 1duv_G           69 QGARVTYLGPSGS------QIGHKESIKDTARVLGR-M--YD-GIQYR-GYGQEIVETLAEYASVPVWNGLTNEFHPTQL  137 (333)
T ss_dssp             TTCEEEEECSSSS------CBTTTBCHHHHHHHHTT-T--CS-EEEEE-CSCHHHHHHHHHHHSSCEEESCCSSCCHHHH
T ss_pred             cCCeEEEECCccc------cCcCCCcHHHHHHHHHH-h--CC-EEEEE-cCCchHHHHHHHhCCCCeEcCCCCCCCchHH
Confidence            4445566654322      23677999887654222 2  22 33443 2333334444555679999987776666777


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhh-hcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCc---
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKY-LDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPI---  382 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~-~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~---  382 (718)
                      +++-|.+-+                       . .|..+.|.+|++||-|  +++...+..+..||++|.++-+...   
T Consensus       138 LaDl~Ti~e-----------------------~~~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~p~  194 (333)
T 1duv_G          138 LADLLTMQE-----------------------HLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPE  194 (333)
T ss_dssp             HHHHHHHHH-----------------------HSTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCC
T ss_pred             HHHHHHHHH-----------------------HhcCCCCCCcEEEEECCCccchHHHHHHHHHHcCCEEEEECCcccCCC
Confidence            777665532                       1 2436899999999996  9999999999999999999854322   


Q ss_pred             cHH-H-----HhhcCce---ecCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcC
Q psy7896         383 NAL-Q-----ASMEGYE---VTTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIG  435 (718)
Q Consensus       383 ~al-~-----a~~~G~~---v~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~G  435 (718)
                      ... +     +...|..   ..+++++++.+|||.+..    |             ...-+|.+.++.+ |+++++.-+.
T Consensus       195 ~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          195 AALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             HHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHHHHhccCCCcEEECCC
Confidence            111 1     1134533   468999999999999831    1             1246899999999 9999999997


Q ss_pred             CC
Q psy7896         436 HF  437 (718)
Q Consensus       436 Rg  437 (718)
                      -.
T Consensus       275 P~  276 (333)
T 1duv_G          275 PA  276 (333)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.96  E-value=0.014  Score=62.03  Aligned_cols=188  Identities=17%  Similarity=0.151  Sum_probs=119.8

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhc-CCeEEEeec-Cchhh
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEI-DPINA  305 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~-Gv~VtV~D~-dp~r~  305 (718)
                      .|+-=++..+++.+-    ...|-+||+.|...--.. +  . .+.|+....-| .+...++-- +++|++.-. +...=
T Consensus        65 ~LGg~~i~l~~~~~~----S~~~kgEsl~DTarvls~-~--~-D~iviR~~~~~-~~~~la~~~~~vPVINag~G~~~HP  135 (310)
T 3csu_A           65 RLGASVVGFSDSANT----SLGKKGETLADTISVIST-Y--V-DAIVMRHPQEG-AARLATEFSGNVPVLNAGDGSNQHP  135 (310)
T ss_dssp             TTTCEEEEESCC---------CCSHHHHHHHHHHHTT-T--C-SEEEEEESSTT-HHHHHHHHCTTCCEEEEEETTSCCH
T ss_pred             HhCCeEEEeCCCccc----hhhccCCcHHHHHHHHHH-h--C-CEEEEECCChh-HHHHHHHhcCCCCEEcCccCCCCCc
Confidence            455556666544320    024578999886654222 2  2 34445433322 233334444 699998644 56666


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhC-CCEEEEEecCC
Q psy7896         306 LQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLF-GSRVIVTEIDP  381 (718)
Q Consensus       306 v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~f-Ga~Viv~d~dp  381 (718)
                      .|+.++-|.+-+                       ..| .+.|++|++||-|   ++.+..+..+..| |++|.++-+..
T Consensus       136 tQaLaDl~Ti~e-----------------------~~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~  191 (310)
T 3csu_A          136 TQTLLDLFTIQE-----------------------TQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDA  191 (310)
T ss_dssp             HHHHHHHHHHHH-----------------------HHS-CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGG
T ss_pred             hHHHHHHHHHHH-----------------------HhC-CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcc
Confidence            677777665532                       112 5889999999984   8999999999999 99999985432


Q ss_pred             cc---HH--HHhhcCce---ecCHHHHhccCcEEEEcC---C-----C------CCCcCHHHHhcCCCCeEEEEcCCCCc
Q psy7896         382 IN---AL--QASMEGYE---VTTMEEAAKEGGIFVTTT---G-----C------KDIIRGEHFLQMRDDAIVCNIGHFDC  439 (718)
Q Consensus       382 ~~---al--~a~~~G~~---v~~Leell~~aDiIi~at---g-----t------~~lI~~e~l~~MK~gAiLIN~GRgd~  439 (718)
                      ..   ..  .+...|..   ..+++|+++.+|+|.+..   .     .      ..-+|.+.++.+|+++++.-++--..
T Consensus       192 ~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~  271 (310)
T 3csu_A          192 LAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVD  271 (310)
T ss_dssp             GCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-----------------CCBCGGGGTTCCTTCEEECCSCCSS
T ss_pred             cccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCC
Confidence            21   11  11123533   257999999999999751   1     0      24589999999999999999987567


Q ss_pred             cccHHHHhc
Q psy7896         440 EIQVSWLDK  448 (718)
Q Consensus       440 Eid~~aL~~  448 (718)
                      ||+.+-+..
T Consensus       272 EI~~eV~d~  280 (310)
T 3csu_A          272 EIATDVDKT  280 (310)
T ss_dssp             SBCHHHHTS
T ss_pred             eecHHHhCC
Confidence            888665543

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.95  E-value=0.0014  Score=69.78  Aligned_cols=91  Identities=14%  Similarity=0.097  Sum_probs=68.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec------CHHHHh-ccCcEEEEcCCC--CCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT------TMEEAA-KEGGIFVTTTGC--KDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~------~Leell-~~aDiIi~atgt--~~l  416 (718)
                      .|++|.|+|.|.||..+++.++.+|++|++++.++.+...+...|.. +.      ++.+.+ ...|+++.+++.  ...
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~  258 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID  258 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence            68999999999999999999999999999999877654333334532 11      222223 367999988876  444


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCC
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      +. ..++.|+++..++.+|...
T Consensus       259 ~~-~~~~~l~~~G~iv~~g~~~  279 (360)
T 1piw_A          259 FN-IMPKAMKVGGRIVSISIPE  279 (360)
T ss_dssp             TT-TGGGGEEEEEEEEECCCCC
T ss_pred             HH-HHHHHhcCCCEEEEecCCC
Confidence            44 5688999999999998754

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=96.94  E-value=0.00076  Score=75.66  Aligned_cols=89  Identities=17%  Similarity=0.218  Sum_probs=63.0

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-----------hcCc-------------e-ecCHHHHhc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-----------MEGY-------------E-VTTMEEAAK  402 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-----------~~G~-------------~-v~~Leell~  402 (718)
                      -++|+|||.|.+|..+|..+...|.+|+++|+++.....+.           ..|.             . ..++ +.++
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~   83 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDI-HALA   83 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCG-GGGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCH-HHhc
Confidence            36899999999999999999999999999999886432211           1221             1 2345 4688


Q ss_pred             cCcEEEEcCCCCC----CcCHHHHhcCCCCeEE-EEcCCC
Q psy7896         403 EGGIFVTTTGCKD----IIRGEHFLQMRDDAIV-CNIGHF  437 (718)
Q Consensus       403 ~aDiIi~atgt~~----lI~~e~l~~MK~gAiL-IN~GRg  437 (718)
                      +||+|+.+....-    -+-.+..+.++++++| .|++..
T Consensus        84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti  123 (483)
T 3mog_A           84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSI  123 (483)
T ss_dssp             GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSS
T ss_pred             CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCC
Confidence            9999999865421    1223344568999998 577764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.94  E-value=0.001  Score=70.34  Aligned_cols=92  Identities=16%  Similarity=0.154  Sum_probs=70.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--cCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--TTMEEAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--~~Leell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      -.|++|.|+|.|.||..+++.++.+|++|++++.++.+...+...|...  .+.+++.+..|+++.+.+....+ ...++
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~-~~~~~  253 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDL-KDYLK  253 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCH-HHHHT
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHH-HHHHH
Confidence            3689999999999999999999999999999998887654444455432  12233333689999888875443 46788


Q ss_pred             cCCCCeEEEEcCCCC
Q psy7896         424 QMRDDAIVCNIGHFD  438 (718)
Q Consensus       424 ~MK~gAiLIN~GRgd  438 (718)
                      .++++..++.+|...
T Consensus       254 ~l~~~G~iv~~G~~~  268 (348)
T 3two_A          254 LLTYNGDLALVGLPP  268 (348)
T ss_dssp             TEEEEEEEEECCCCC
T ss_pred             HHhcCCEEEEECCCC
Confidence            999999999998754

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=96.93  E-value=0.0011  Score=74.14  Aligned_cols=87  Identities=11%  Similarity=0.072  Sum_probs=62.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH--------HHhhcCc-------------e-ecCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL--------QASMEGY-------------E-VTTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al--------~a~~~G~-------------~-v~~Leell~~aDi  406 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.+..        .....|.             . ..+++ .+++||+
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDl  133 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDL  133 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCE
Confidence            7899999999999999999999999999999886321        1112221             1 34564 6889999


Q ss_pred             EEEcCCCCC----CcCHHHHhcCCCCeEEE-EcCC
Q psy7896         407 FVTTTGCKD----IIRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       407 Ii~atgt~~----lI~~e~l~~MK~gAiLI-N~GR  436 (718)
                      ||.+....-    .+-++..+.++++++|+ |++.
T Consensus       134 VIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSs  168 (460)
T 3k6j_A          134 IVESVIEDMKLKKELFANLENICKSTCIFGTNTSS  168 (460)
T ss_dssp             EEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred             EEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCC
Confidence            999865421    12233445789999996 6654

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=96.90  E-value=0.00023  Score=73.39  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=55.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEE-EEEecCCccHHHHh-hcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcC-
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRV-IVTEIDPINALQAS-MEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQM-  425 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~V-iv~d~dp~~al~a~-~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~M-  425 (718)
                      ++|||||+|++|..+++.+... .+| .++++++.+..... ..|....+++++++++|+|++++....+  .+.+..+ 
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~~--~~v~~~l~   79 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYI--KTVANHLN   79 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTTH--HHHHTTTC
T ss_pred             ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHHH--HHHHHHhc
Confidence            4799999999999999998766 788 48988876443322 2233334677788899999998766432  4555555 


Q ss_pred             CCCeEEEEcCCC
Q psy7896         426 RDDAIVCNIGHF  437 (718)
Q Consensus       426 K~gAiLIN~GRg  437 (718)
                      +++.+++|++-+
T Consensus        80 ~~~~ivi~~s~~   91 (276)
T 2i76_A           80 LGDAVLVHCSGF   91 (276)
T ss_dssp             CSSCCEEECCSS
T ss_pred             cCCCEEEECCCC
Confidence            588899998754

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.90  E-value=0.002  Score=71.10  Aligned_cols=94  Identities=22%  Similarity=0.326  Sum_probs=65.0

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecC-----C--c--cHHHHh--hcC------ceecCHHHHhc-
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEID-----P--I--NALQAS--MEG------YEVTTMEEAAK-  402 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~d-----p--~--~al~a~--~~G------~~v~~Leell~-  402 (718)
                      .|.+++|+||.|.|+|++|+.+|+.|..+|++|+ +.|.+     |  .  ..+...  ..|      .+..+-++++. 
T Consensus       215 ~g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~  294 (424)
T 3k92_A          215 KGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEK  294 (424)
T ss_dssp             TTCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHS
T ss_pred             cCCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceec
Confidence            4778999999999999999999999999999975 56654     1  1  111111  112      23445667654 


Q ss_pred             cCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       403 ~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +|||++.|... +.|+.+....++. -+++-.+.+
T Consensus       295 ~~DIliPcA~~-n~I~~~~a~~l~a-k~V~EgAN~  327 (424)
T 3k92_A          295 DCDILVPAAIS-NQITAKNAHNIQA-SIVVERANG  327 (424)
T ss_dssp             CCSEEEECSCS-SCBCTTTGGGCCC-SEEECCSSS
T ss_pred             cccEEeecCcc-cccChhhHhhcCc-eEEEcCCCC
Confidence            79999998654 7899988888843 233333333

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=96.86  E-value=0.00076  Score=72.40  Aligned_cols=87  Identities=7%  Similarity=0.064  Sum_probs=62.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-------CEEEEEecCCc-----cHHHHhh--------------cCcee-cCHHHHh
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-------SRVIVTEIDPI-----NALQASM--------------EGYEV-TTMEEAA  401 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-------a~Viv~d~dp~-----~al~a~~--------------~G~~v-~~Leell  401 (718)
                      ++|+|||.|.+|..+|..|..-|       .+|+++++++.     .......              .+... .++++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~  101 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI  101 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence            57999999999999999998777       89999998876     3321111              12232 3577889


Q ss_pred             ccCcEEEEcCCCCCCcCHHH---H-h----cCCCCeEEEEcCCC
Q psy7896         402 KEGGIFVTTTGCKDIIRGEH---F-L----QMRDDAIVCNIGHF  437 (718)
Q Consensus       402 ~~aDiIi~atgt~~lI~~e~---l-~----~MK~gAiLIN~GRg  437 (718)
                      +.+|+|+++.....+  .+.   + .    .++++.+++++.-+
T Consensus       102 ~~aDvVilav~~~~~--~~vl~~i~~~~~~~l~~~~ivvs~~~G  143 (375)
T 1yj8_A          102 NDADLLIFIVPCQYL--ESVLASIKESESIKIASHAKAISLTKG  143 (375)
T ss_dssp             TTCSEEEECCCHHHH--HHHHHHHTC---CCCCTTCEEEECCCS
T ss_pred             cCCCEEEEcCCHHHH--HHHHHHHhhhhhccCCCCCEEEEeCCc
Confidence            999999998765321  122   2 3    56778999988654

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=96.83  E-value=0.0014  Score=70.29  Aligned_cols=91  Identities=18%  Similarity=0.222  Sum_probs=67.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec---C---HHHHhccCcEEEEcCCCCCCcCH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT---T---MEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~---~---Leell~~aDiIi~atgt~~lI~~  419 (718)
                      .|.+|.|+|.|.||..+++.++.+|++|++++.++.+...+...|.. +.   +   .+++....|+++.+++....+ .
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~~~-~  272 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNL-D  272 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCH-H
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHHHH-H
Confidence            58999999999999999999999999999998877654333334542 11   1   222334679999888765443 3


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      ..++.|+++..++.+|...
T Consensus       273 ~~~~~l~~~G~iv~~G~~~  291 (369)
T 1uuf_A          273 DFTTLLKRDGTMTLVGAPA  291 (369)
T ss_dssp             HHHTTEEEEEEEEECCCC-
T ss_pred             HHHHHhccCCEEEEeccCC
Confidence            5788999999999998753

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.81  E-value=0.001  Score=73.15  Aligned_cols=102  Identities=18%  Similarity=0.198  Sum_probs=69.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----C---HHHH-hccCcEEEEcCCCC--CC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----T---MEEA-AKEGGIFVTTTGCK--DI  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~---Leel-l~~aDiIi~atgt~--~l  416 (718)
                      +.+|.|+|+|++|+.+++.|+..|.+|+++|.||.....+...|+.+.     +   |+++ +.++|+|++++++.  ++
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~   83 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNL   83 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHH
Confidence            467999999999999999999999999999999976544445565432     2   3344 67899999987753  22


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhcccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAV  451 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l  451 (718)
                      .-......+.+...++--.+.  .-....|...+.
T Consensus        84 ~i~~~ar~~~p~~~Iiara~~--~~~~~~L~~~Ga  116 (413)
T 3l9w_A           84 QLTEMVKEHFPHLQIIARARD--VDHYIRLRQAGV  116 (413)
T ss_dssp             HHHHHHHHHCTTCEEEEEESS--HHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCeEEEEECC--HHHHHHHHHCCC
Confidence            333445666777666654443  223344544443

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=96.81  E-value=0.0043  Score=68.71  Aligned_cols=91  Identities=12%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---ecCHHHH---------------hccCcEE
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---VTTMEEA---------------AKEGGIF  407 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---v~~Leel---------------l~~aDiI  407 (718)
                      -+|.++.|||+|.+|..+|..|...|.+|+++|+++.+.... ..|..   -..++|+               +++||+|
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L-~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvv   87 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKL-QNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVF   87 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH-HTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEE
T ss_pred             ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHH-HCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEE
Confidence            468899999999999999999999999999999998654322 22211   1123333               3579999


Q ss_pred             EEcCCCCCCcC--------------HHHHhcCCCCeEEEEcCCC
Q psy7896         408 VTTTGCKDIIR--------------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       408 i~atgt~~lI~--------------~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++.+|..-.+              ....+.|++|.++|+.+-.
T Consensus        88 ii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV  131 (431)
T 3ojo_A           88 IIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTI  131 (431)
T ss_dssp             EECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCC
T ss_pred             EEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCC
Confidence            99866643111              2234579999999998754

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.81  E-value=0.0047  Score=68.12  Aligned_cols=84  Identities=25%  Similarity=0.323  Sum_probs=60.7

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHh-CCCEEE-EEec----------CCccHHHHh-hcC-------ceecCHHHHh
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRL-FGSRVI-VTEI----------DPINALQAS-MEG-------YEVTTMEEAA  401 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~-fGa~Vi-v~d~----------dp~~al~a~-~~G-------~~v~~Leell  401 (718)
                      .|.+++|++|.|.|+|++|+.+|+.|.. .|++|+ +.|.          |+....+.. ..|       ....+.++++
T Consensus       203 ~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil  282 (415)
T 2tmg_A          203 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL  282 (415)
T ss_dssp             TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHT
T ss_pred             cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhh
Confidence            5778999999999999999999999998 999988 5554          222111111 111       2344667776


Q ss_pred             c-cCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         402 K-EGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       402 ~-~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                      . .+|+++.|+. .+.|+.+....++
T Consensus       283 ~~~~DIliP~A~-~n~i~~~~a~~l~  307 (415)
T 2tmg_A          283 ELDVDILVPAAL-EGAIHAGNAERIK  307 (415)
T ss_dssp             TCSCSEEEECSS-TTSBCHHHHTTCC
T ss_pred             cCCCcEEEecCC-cCccCcccHHHcC
Confidence            4 7999998753 3578998888884

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=96.80  E-value=0.0014  Score=65.86  Aligned_cols=81  Identities=15%  Similarity=0.149  Sum_probs=59.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEE-EEEecCCccHHHHhhcCceecCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRV-IVTEIDPINALQASMEGYEVTTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~V-iv~d~dp~~al~a~~~G~~v~~Leell-~~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                      .+|||||+|++|+.+++.+..-|.++ .++|+++. ..    .  .+.++++++ .++|+|+.++++. ..-+.....++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~-~~----~--~~~~~~~l~~~~~DvVv~~~~~~-~~~~~~~~~l~   72 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGE-HE----K--MVRGIDEFLQREMDVAVEAASQQ-AVKDYAEKILK   72 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC-CT----T--EESSHHHHTTSCCSEEEECSCHH-HHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcc-hh----h--hcCCHHHHhcCCCCEEEECCCHH-HHHHHHHHHHH
Confidence            37999999999999999998889987 58887752 11    1  456799999 6899999998764 22222345677


Q ss_pred             CCeEEEEcCCC
Q psy7896         427 DDAIVCNIGHF  437 (718)
Q Consensus       427 ~gAiLIN~GRg  437 (718)
                      .|..++...-+
T Consensus        73 ~G~~vv~~~~~   83 (236)
T 2dc1_A           73 AGIDLIVLSTG   83 (236)
T ss_dssp             TTCEEEESCGG
T ss_pred             CCCcEEEECcc
Confidence            88877776543

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.79  E-value=0.0022  Score=71.27  Aligned_cols=96  Identities=16%  Similarity=0.132  Sum_probs=65.7

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEe--------cCCcc--HHHH----------------hhcCceec
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE--------IDPIN--ALQA----------------SMEGYEVT  395 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d--------~dp~~--al~a----------------~~~G~~v~  395 (718)
                      .+.++.||||.|-|+|++|+.+|+.|..+|++|+.++        .+...  .+..                ...|..+.
T Consensus       229 ~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~  308 (450)
T 4fcc_A          229 HGMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYL  308 (450)
T ss_dssp             TTCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEE
T ss_pred             cCCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEe
Confidence            4678999999999999999999999999999988743        22111  0000                01133333


Q ss_pred             CHHHHhc-cCcEEEEcCCCCCCcCHHHHhcCCCC--eEEEEcCCCC
Q psy7896         396 TMEEAAK-EGGIFVTTTGCKDIIRGEHFLQMRDD--AIVCNIGHFD  438 (718)
Q Consensus       396 ~Leell~-~aDiIi~atgt~~lI~~e~l~~MK~g--AiLIN~GRgd  438 (718)
                      +-++++. .|||++.|... +.|+.+...+++.+  .++++.+...
T Consensus       309 ~~~~i~~~~~DI~iPcAl~-~~I~~~~a~~L~a~g~k~IaEgAN~p  353 (450)
T 4fcc_A          309 EGQQPWSVPVDIALPCATQ-NELDVDAAHQLIANGVKAVAEGANMP  353 (450)
T ss_dssp             ETCCGGGSCCSEEEECSCT-TCBCHHHHHHHHHTTCCEEECCSSSC
T ss_pred             cCcccccCCccEEeecccc-ccccHHHHHHHHhcCceEEecCCCCC
Confidence            3344433 79999987432 57999999988754  4666666554

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=96.79  E-value=0.012  Score=62.42  Aligned_cols=167  Identities=16%  Similarity=0.145  Sum_probs=107.9

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEe-ecCchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT-EIDPINALQASMEGYELDEEVAALHLEHL  327 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~-D~dp~r~v~AvaeGf~L~r~i~~~~l~~l  327 (718)
                      .|-+||+-|...--.   .-|--+.|+....-| .+...++--+++|++. |.+...=.|+.++-|.+.+          
T Consensus        75 ~~kgEsl~DTarvLs---~~~~D~iviR~~~~~-~~~~la~~~~vPVINagdg~~~HPtQaLaDl~Ti~e----------  140 (304)
T 3r7f_A           75 VQKGETLYDTIRTLE---SIGVDVCVIRHSEDE-YYEELVSQVNIPILNAGDGCGQHPTQSLLDLMTIYE----------  140 (304)
T ss_dssp             SCSSSCHHHHHHHHH---HHTCCEEEEECSSTT-CHHHHHHHCSSCEEESCCTTSCCHHHHHHHHHHHHH----------
T ss_pred             CCCCCCHHHHHHHHH---HhcCCEEEEecCChh-HHHHHHHhCCCCEEeCCCCCCcCcHHHHHHHHHHHH----------
Confidence            456788877654311   122234444433222 2333445667899887 4455555666666655432          


Q ss_pred             cccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccC
Q psy7896         328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEG  404 (718)
Q Consensus       328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~a  404 (718)
                                   ..| .+.|++|++||-|   ++....+..+..||++|.++-+..... +....| ...+++|+++.+
T Consensus       141 -------------~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~-~~~~~g-~~~d~~eav~~a  204 (304)
T 3r7f_A          141 -------------EFN-TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD-EENTFG-TYVSMDEAVESS  204 (304)
T ss_dssp             -------------HHS-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSC-TTCSSC-EECCHHHHHHHC
T ss_pred             -------------HhC-CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCc-chhhcC-ccCCHHHHhCCC
Confidence                         112 4889999999985   699999999999999999985422221 111223 456899999999


Q ss_pred             cEEEEcCC---------C------CCCcCHHHHhcCCCCeEEEEcCCC--CccccHHH
Q psy7896         405 GIFVTTTG---------C------KDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSW  445 (718)
Q Consensus       405 DiIi~atg---------t------~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~a  445 (718)
                      |+|.+...         .      ..-++.+.++.+|+++++.-+.-.  +.||+.+-
T Consensus       205 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHclP~~Rg~EI~~eV  262 (304)
T 3r7f_A          205 DVVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSL  262 (304)
T ss_dssp             SEEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCSCCCBTTTBCGGG
T ss_pred             CEEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCCCCCCCceeCHHH
Confidence            99998421         0      123899999999999999999742  24676443

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=96.79  E-value=0.0016  Score=72.73  Aligned_cols=88  Identities=13%  Similarity=0.082  Sum_probs=62.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccHHHHhh-------------------cCcee-cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINALQASM-------------------EGYEV-TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~al~a~~-------------------~G~~v-~~Leell~~aDi  406 (718)
                      ++|+|||+|.+|..+|..|...  |.+|+++|+++.+......                   .+..+ .++.++++++|+
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv   89 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL   89 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence            5899999999999999999776  7899999988764322211                   02222 356788899999


Q ss_pred             EEEcCCCCC---------CcC--------HHHHhcCCCCeEEEEcCC
Q psy7896         407 FVTTTGCKD---------IIR--------GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       407 Ii~atgt~~---------lI~--------~e~l~~MK~gAiLIN~GR  436 (718)
                      |+++.++.-         -.+        ......++++.++|+.+-
T Consensus        90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~ST  136 (481)
T 2o3j_A           90 IFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKST  136 (481)
T ss_dssp             EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSC
T ss_pred             EEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCC
Confidence            999855431         111        122356899999999764

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=96.78  E-value=0.003  Score=64.51  Aligned_cols=68  Identities=13%  Similarity=0.070  Sum_probs=49.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCC--cCHHHHhcC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDI--IRGEHFLQM  425 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~l--I~~e~l~~M  425 (718)
                      -++|+|||.|.||..+|+.|+..|.+|+++++.                 ++ ++.+| |+..+.. .+  +-.+....+
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~-----------------~~-~~~aD-ilavP~~-ai~~vl~~l~~~l   65 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP-----------------ED-IRDFE-LVVIDAH-GVEGYVEKLSAFA   65 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG-----------------GG-GGGCS-EEEECSS-CHHHHHHHHHTTC
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH-----------------HH-hccCC-EEEEcHH-HHHHHHHHHHHhc
Confidence            368999999999999999999999999998651                 12 45789 4443332 22  112333467


Q ss_pred             CCCeEEEEcC
Q psy7896         426 RDDAIVCNIG  435 (718)
Q Consensus       426 K~gAiLIN~G  435 (718)
                      ++++++++++
T Consensus        66 ~~g~ivvd~s   75 (232)
T 3dfu_A           66 RRGQMFLHTS   75 (232)
T ss_dssp             CTTCEEEECC
T ss_pred             CCCCEEEEEC
Confidence            9999999974

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=96.76  E-value=0.001  Score=68.80  Aligned_cols=86  Identities=15%  Similarity=0.044  Sum_probs=60.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-----C-CEEEEEecCCccHHHHhh-cCceec--------------CHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-----G-SRVIVTEIDPINALQASM-EGYEVT--------------TMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-----G-a~Viv~d~dp~~al~a~~-~G~~v~--------------~Leell~~aDiI  407 (718)
                      ++|+|||.|.+|..+|..|..-     | .+|+++++ +.+...... .|..+.              +..+.++.+|+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v   87 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYI   87 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEE
Confidence            5899999999999999999877     8 89999987 533222223 455432              233567889999


Q ss_pred             EEcCCCCCCcCHHHHh----cCCCCeEEEEcCCC
Q psy7896         408 VTTTGCKDIIRGEHFL----QMRDDAIVCNIGHF  437 (718)
Q Consensus       408 i~atgt~~lI~~e~l~----~MK~gAiLIN~GRg  437 (718)
                      ++++.+..+  .+.++    .++++.+++.+.-|
T Consensus        88 il~vk~~~~--~~v~~~i~~~l~~~~~iv~~~nG  119 (317)
T 2qyt_A           88 LFCTKDYDM--ERGVAEIRPMIGQNTKILPLLNG  119 (317)
T ss_dssp             EECCSSSCH--HHHHHHHGGGEEEEEEEEECSCS
T ss_pred             EEecCcccH--HHHHHHHHhhcCCCCEEEEccCC
Confidence            999776553  33333    45667888887554

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=96.74  E-value=0.0018  Score=68.98  Aligned_cols=91  Identities=16%  Similarity=0.169  Sum_probs=68.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCce-e---cCHH---HHhccCcEEEEcCCCCCCcC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYE-V---TTME---EAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~-v---~~Le---ell~~aDiIi~atgt~~lI~  418 (718)
                      .|++|.|+|.|.||..+++.++.+|++|++++.++.+...+. ..|.. +   .+.+   ++....|+++-++|....+ 
T Consensus       180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~~-  258 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHAL-  258 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCCS-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHHH-
Confidence            689999999999999999999999999999998776543333 44542 1   1222   2233579999888764333 


Q ss_pred             HHHHhcCCCCeEEEEcCCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ...++.++++..++.+|...
T Consensus       259 ~~~~~~l~~~G~iv~~G~~~  278 (357)
T 2cf5_A          259 EPYLSLLKLDGKLILMGVIN  278 (357)
T ss_dssp             HHHHTTEEEEEEEEECSCCS
T ss_pred             HHHHHHhccCCEEEEeCCCC
Confidence            46788999999999998653

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=96.71  E-value=0.021  Score=60.54  Aligned_cols=185  Identities=15%  Similarity=0.115  Sum_probs=119.0

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeec-Cchhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI-DPINALQ  307 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~-dp~r~v~  307 (718)
                      |+--++..+++..     ...|-+||+.|...--.. +  . -+.|+....-| .+...++--+++|++.-. +...=.|
T Consensus        69 LGg~~i~l~~~~~-----s~~~kgEsl~DTarvls~-~--~-D~iviR~~~~~-~~~~la~~~~vPVINag~g~~~HPtQ  138 (308)
T 1ml4_A           69 LGGAVIGFAEAST-----SSVKKGESLRDTIKTVEQ-Y--C-DVIVIRHPKEG-AARLAAEVAEVPVINAGDGSNQHPTQ  138 (308)
T ss_dssp             TTCEEEEESCGGG-----SGGGGTCCHHHHHHHHTT-T--C-SEEEEEESSTT-HHHHHHHTCSSCEEEEEETTSCCHHH
T ss_pred             hCCeEEEeCCCcc-----ccccCCCCHHHHHHHHHH-h--C-cEEEEecCChh-HHHHHHHhCCCCEEeCccCCccCcHH
Confidence            4445666654431     124567998886654322 2  2 34455433322 233344555689998644 5566667


Q ss_pred             hhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhCCCEEEEEecCCcc-
Q psy7896         308 ASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLFGSRVIVTEIDPIN-  383 (718)
Q Consensus       308 AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~fGa~Viv~d~dp~~-  383 (718)
                      +.++-|.+-+                       ..| .+.|++|++||=|   ++....+..+..||++|.++-+.... 
T Consensus       139 ~LaDl~Ti~e-----------------------~~g-~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~  194 (308)
T 1ml4_A          139 TLLDLYTIKK-----------------------EFG-RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRM  194 (308)
T ss_dssp             HHHHHHHHHH-----------------------HSS-CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCC
T ss_pred             HHHHHHHHHH-----------------------HhC-CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccC
Confidence            7777665432                       112 5889999999985   89999999999999999998543221 


Q ss_pred             --HH--HHhhcCce---ecCHHHHhccCcEEEEcC------C---------CCCCcCHHHHhcCCCCeEEEEcCCCCccc
Q psy7896         384 --AL--QASMEGYE---VTTMEEAAKEGGIFVTTT------G---------CKDIIRGEHFLQMRDDAIVCNIGHFDCEI  441 (718)
Q Consensus       384 --al--~a~~~G~~---v~~Leell~~aDiIi~at------g---------t~~lI~~e~l~~MK~gAiLIN~GRgd~Ei  441 (718)
                        ..  .+...|..   ..+++|+++.+|+|.+..      +         ...-+|.+.++.+|+++++.-++--..||
T Consensus       195 ~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI  274 (308)
T 1ml4_A          195 PRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEI  274 (308)
T ss_dssp             CHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSSSB
T ss_pred             CHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCCCCCee
Confidence              11  11123533   357999999999999842      1         13458999999999999999998655677


Q ss_pred             cHHHHh
Q psy7896         442 QVSWLD  447 (718)
Q Consensus       442 d~~aL~  447 (718)
                      +.+-+.
T Consensus       275 ~~eV~d  280 (308)
T 1ml4_A          275 HPEVDN  280 (308)
T ss_dssp             CGGGGG
T ss_pred             cHHHhC
Confidence            755443

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=96.70  E-value=0.0026  Score=70.28  Aligned_cols=84  Identities=29%  Similarity=0.411  Sum_probs=58.4

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEec----------CCccHHHHhh--cCc------------eec-
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEI----------DPINALQASM--EGY------------EVT-  395 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~----------dp~~al~a~~--~G~------------~v~-  395 (718)
                      .|.+++|++|.|.|+|++|+.+|+.|..+|++|+ +.|.          |+.. +....  .|.            ... 
T Consensus       204 ~g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVavsD~~G~i~dp~GlD~~~-l~~~k~~~g~~~v~~y~~~~~~~~~~  282 (421)
T 1v9l_A          204 LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVEL-IQKNKGLTGPALVELFTTKDNAEFVK  282 (421)
T ss_dssp             HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHH-HHHTTTSCHHHHHHHHHHTSCCCCCS
T ss_pred             cCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEECCCcEEECCCCCCHHH-HHHHHHhhCCccccccccccCceEeC
Confidence            4678999999999999999999999999999988 5554          2221 11111  111            222 


Q ss_pred             CHHHHhc-cCcEEEEcCCCCCCcCHHHHhcCCC
Q psy7896         396 TMEEAAK-EGGIFVTTTGCKDIIRGEHFLQMRD  427 (718)
Q Consensus       396 ~Leell~-~aDiIi~atgt~~lI~~e~l~~MK~  427 (718)
                      +-++++. .||+++.|. ..+.|+.+....++.
T Consensus       283 ~~~~~~~~~~Dil~P~A-~~~~I~~~~a~~l~a  314 (421)
T 1v9l_A          283 NPDAIFKLDVDIFVPAA-IENVIRGDNAGLVKA  314 (421)
T ss_dssp             STTGGGGCCCSEEEECS-CSSCBCTTTTTTCCC
T ss_pred             CchhhhcCCccEEEecC-cCCccchhhHHHcCc
Confidence            3355554 789998875 345788877777754

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.69  E-value=0.021  Score=61.77  Aligned_cols=175  Identities=18%  Similarity=0.133  Sum_probs=115.9

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ  307 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~  307 (718)
                      .|+-=++..+.+.+      ..|-+||+.|...--.. +  .. +.|+. ++---.+..+++--+++|++...+...=.|
T Consensus        91 ~LGg~vi~l~~~~s------s~~kgEsl~DTarvLs~-~--~D-~IviR-~~~~~~~~~lA~~s~vPVINa~~~~~HPtQ  159 (359)
T 2w37_A           91 DLGAHPEYLGQNDI------QLGKKESTSDTAKVLGS-M--FD-GIEFR-GFKQSDAEILARDSGVPVWNGLTDEWHPTQ  159 (359)
T ss_dssp             HTTCEEEEECTTTC------CTTTSSCHHHHHHHHHH-H--CS-EEEEE-SSCHHHHHHHHHHSSSCEEEEECSSCCHHH
T ss_pred             HcCCeEEEeCCccc------cCCCCcCHHHHHHHHHH-h--cC-EEEEe-cCChHHHHHHHHhCCCCEEcCCCCCCCccH
Confidence            34555666654422      23667998876653222 2  22 33343 233333444555667999998877777777


Q ss_pred             hhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCc---
Q psy7896         308 ASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPI---  382 (718)
Q Consensus       308 AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~---  382 (718)
                      ++++-|.+-+                       ..| .+.|.+|++||=|  ++....+..+..||++|.++-+...   
T Consensus       160 aLaDl~Ti~E-----------------------~~g-~l~gl~va~vGD~~~rva~Sl~~~~~~lG~~v~~~~P~~l~p~  215 (359)
T 2w37_A          160 MLADFMTVKE-----------------------NFG-KLQGLTLTFMGDGRNNVANSLLVTGAILGVNIHIVAPKALFPT  215 (359)
T ss_dssp             HHHHHHHHHH-----------------------HHS-CCTTCEEEEESCTTSHHHHHHHHHHHHHTCEEEEECCGGGSCC
T ss_pred             HHHHHHHHHH-----------------------HhC-CcCCeEEEEECCCccchHHHHHHHHHHcCCEEEEECCccccCC
Confidence            7777766532                       112 5889999999996  9999999999999999999754222   


Q ss_pred             cHHH------HhhcC--ce-ecCHHHHhccCcEEEEcC----CC-----------CCCcCHHHHhcCC---CCeEEEEcC
Q psy7896         383 NALQ------ASMEG--YE-VTTMEEAAKEGGIFVTTT----GC-----------KDIIRGEHFLQMR---DDAIVCNIG  435 (718)
Q Consensus       383 ~al~------a~~~G--~~-v~~Leell~~aDiIi~at----gt-----------~~lI~~e~l~~MK---~gAiLIN~G  435 (718)
                      ....      +...|  +. ..+++|+++.+|||.+..    |.           ..-++.+.++.+|   +++++.-++
T Consensus       216 ~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          216 EETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             HHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            1111      11234  22 457999999999999842    21           2458999999999   999999997


Q ss_pred             CC
Q psy7896         436 HF  437 (718)
Q Consensus       436 Rg  437 (718)
                      -.
T Consensus       296 P~  297 (359)
T 2w37_A          296 PA  297 (359)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.67  E-value=0.0031  Score=67.88  Aligned_cols=36  Identities=36%  Similarity=0.374  Sum_probs=33.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|++++..+.
T Consensus       141 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  176 (404)
T 3fg2_P          141 DKKHVVVIGAGFIGLEFAATARAKGLEVDVVELAPR  176 (404)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCc
Confidence            589999999999999999999999999999987653

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=96.66  E-value=0.0037  Score=66.83  Aligned_cols=91  Identities=15%  Similarity=0.165  Sum_probs=68.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.++     ..|+++.++
T Consensus       194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~  273 (376)
T 1e3i_A          194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCA  273 (376)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECC
Confidence            368999999999999999999999999 899998887664444444543 21       2333332     479999998


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      |....+ ...++.++++ ..++.+|..
T Consensus       274 G~~~~~-~~~~~~l~~~~G~iv~~G~~  299 (376)
T 1e3i_A          274 GTAQTL-KAAVDCTVLGWGSCTVVGAK  299 (376)
T ss_dssp             CCHHHH-HHHHHTBCTTTCEEEECCCS
T ss_pred             CCHHHH-HHHHHHhhcCCCEEEEECCC
Confidence            864333 3668899999 999998863

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.65  E-value=0.0038  Score=66.61  Aligned_cols=91  Identities=15%  Similarity=0.239  Sum_probs=68.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.++     ..|+++.++
T Consensus       191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~  270 (374)
T 1cdo_A          191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECV  270 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECC
Confidence            368999999999999999999999999 899998887664444444542 21       2444333     479999988


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      +....+ ...++.++++ ..++.+|..
T Consensus       271 g~~~~~-~~~~~~l~~~~G~iv~~G~~  296 (374)
T 1cdo_A          271 GNVGVM-RNALESCLKGWGVSVLVGWT  296 (374)
T ss_dssp             CCHHHH-HHHHHTBCTTTCEEEECSCC
T ss_pred             CCHHHH-HHHHHHhhcCCcEEEEEcCC
Confidence            763332 3568899999 999999864

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.64  E-value=0.0017  Score=64.77  Aligned_cols=101  Identities=11%  Similarity=0.148  Sum_probs=65.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--------CHHHH-hccCcEEEEcCCCC--CC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--------TMEEA-AKEGGIFVTTTGCK--DI  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--------~Leel-l~~aDiIi~atgt~--~l  416 (718)
                      .+++.|+|+|++|+.+|+.|...|. |+++|++|....... .|+.+.        .++++ ++.+|.++.++++.  ++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   86 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI   86 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHH
Confidence            4689999999999999999999999 999998886543333 454431        23344 67899999887753  33


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE  452 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~  452 (718)
                      .-......+.+...++.-.+.  +-..+.|...+.+
T Consensus        87 ~~~~~a~~~~~~~~iia~~~~--~~~~~~l~~~G~~  120 (234)
T 2aef_A           87 HCILGIRKIDESVRIIAEAER--YENIEQLRMAGAD  120 (234)
T ss_dssp             HHHHHHHHHCSSSEEEEECSS--GGGHHHHHHHTCS
T ss_pred             HHHHHHHHHCCCCeEEEEECC--HhHHHHHHHCCCC
Confidence            334455666777444443332  2233445544433

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.62  E-value=0.0017  Score=64.12  Aligned_cols=100  Identities=10%  Similarity=0.019  Sum_probs=62.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCcee--------cCHHHH-hccCcEEEEcCCCCC--C
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEV--------TTMEEA-AKEGGIFVTTTGCKD--I  416 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v--------~~Leel-l~~aDiIi~atgt~~--l  416 (718)
                      ++|.|+|+|++|+.+|+.|...|.+|+++|.+|...... ...|..+        ..++++ ++++|+++.++++..  +
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~   80 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEVNL   80 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHHHH
Confidence            469999999999999999999999999999998654332 1234332        124444 678999999887632  2


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA  450 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~  450 (718)
                      +-......+.+...++-..+  +.-..+.|...+
T Consensus        81 ~~~~~a~~~~~~~~iia~~~--~~~~~~~l~~~G  112 (218)
T 3l4b_C           81 FIAQLVMKDFGVKRVVSLVN--DPGNMEIFKKMG  112 (218)
T ss_dssp             HHHHHHHHTSCCCEEEECCC--SGGGHHHHHHHT
T ss_pred             HHHHHHHHHcCCCeEEEEEe--CcchHHHHHHCC
Confidence            22233333334444443333  223344455443

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=96.61  E-value=0.0023  Score=70.75  Aligned_cols=94  Identities=27%  Similarity=0.365  Sum_probs=56.9

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecCC------------c--cHHHHh--hcC-------ceecCH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEIDP------------I--NALQAS--MEG-------YEVTTM  397 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~dp------------~--~al~a~--~~G-------~~v~~L  397 (718)
                      .|.+++|++|.|.|+|++|+.+|+.|..+|++|+ +.|.++            .  ..+...  ..|       .+..+-
T Consensus       206 ~g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~  285 (421)
T 2yfq_A          206 FGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITD  285 (421)
T ss_dssp             TTCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC------------
T ss_pred             cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCc
Confidence            4678999999999999999999999999999988 567662            0  111111  111       122333


Q ss_pred             HHHhc-cCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         398 EEAAK-EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       398 eell~-~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++++. .+||++.|+ +.+.|+.+....++ .-+++-.+-+
T Consensus       286 ~~~~~~~~DIliP~A-~~n~i~~~~A~~l~-ak~VvEgAN~  324 (421)
T 2yfq_A          286 EEFWTKEYDIIVPAA-LENVITGERAKTIN-AKLVCEAANG  324 (421)
T ss_dssp             ---------CEEECS-CSSCSCHHHHTTCC-CSEEECCSSS
T ss_pred             cchhcCCccEEEEcC-CcCcCCcccHHHcC-CeEEEeCCcc
Confidence            45543 689999875 34689999888883 2344444443

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.61  E-value=0.0036  Score=66.78  Aligned_cols=91  Identities=16%  Similarity=0.123  Sum_probs=68.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.++     ..|+++.++
T Consensus       190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~  269 (373)
T 1p0f_A          190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECA  269 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECC
Confidence            368999999999999999999999999 899998877664444445543 21       2333332     479999988


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      |....+ ...++.++++ ..++.+|..
T Consensus       270 g~~~~~-~~~~~~l~~~~G~iv~~G~~  295 (373)
T 1p0f_A          270 GRIETM-MNALQSTYCGSGVTVVLGLA  295 (373)
T ss_dssp             CCHHHH-HHHHHTBCTTTCEEEECCCC
T ss_pred             CCHHHH-HHHHHHHhcCCCEEEEEccC
Confidence            763333 3568899999 999999864

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=96.61  E-value=0.045  Score=59.33  Aligned_cols=161  Identities=17%  Similarity=0.099  Sum_probs=107.4

Q ss_pred             cccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHh
Q psy7896         248 LYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHL  327 (718)
Q Consensus       248 ~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~l  327 (718)
                      ..|-+||+.|.+.--.. +  .. +.|+ +++-.-.+...++--+++|++.-.+...=.|++++-|.+-+          
T Consensus       109 s~~kgEsl~DTarvLs~-~--~D-~Ivi-R~~~~~~~~~lA~~s~vPVINa~~~~~HPtQaLaDl~Ti~E----------  173 (365)
T 4amu_A          109 NMGKKESIEDTAKVLGR-F--YD-GIEF-RGFAQSDVDALVKYSGVPVWNGLTDDEHPTQIIADFMTMKE----------  173 (365)
T ss_dssp             CCSSSSCHHHHHHHHHH-H--CS-EEEE-ECSCHHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHH----------
T ss_pred             cCCCCcCHHHHHHHHHh-h--Cc-EEEE-ecCChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHH----------
Confidence            35677998876653222 2  22 3333 33333344445566789999877666666677777665432          


Q ss_pred             cccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCccH-----H-H-----HhhcCce-
Q psy7896         328 GVKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPINA-----L-Q-----ASMEGYE-  393 (718)
Q Consensus       328 gv~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~a-----l-~-----a~~~G~~-  393 (718)
                                   ..| .+.|++|++||=+  ++....+..+..||++|.++-+.....     . +     +...|.. 
T Consensus       174 -------------~~G-~l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i  239 (365)
T 4amu_A          174 -------------KFG-NLKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSL  239 (365)
T ss_dssp             -------------HHS-SCTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEE
T ss_pred             -------------HhC-CCCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEE
Confidence                         122 3899999999998  789999999999999999985432211     1 0     1223432 


Q ss_pred             --ecCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         394 --VTTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       394 --v~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                        ..+++|+++.+|||.+-.    +             ...-++.+.++.+|+++++.-+.-.
T Consensus       240 ~~~~d~~eav~~aDVVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcLP~  302 (365)
T 4amu_A          240 RFSTDKILAAQDADVIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCLPA  302 (365)
T ss_dssp             EEESCHHHHTTTCSEEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECSCC
T ss_pred             EEECCHHHHhcCCCEEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCC
Confidence              358999999999998731    1             1245899999999999999998764

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=96.60  E-value=0.0046  Score=68.25  Aligned_cols=95  Identities=26%  Similarity=0.370  Sum_probs=65.5

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEec----------CCccHHHHh-hcC-ce--ecCHHHHhc-cCc
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEI----------DPINALQAS-MEG-YE--VTTMEEAAK-EGG  405 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~----------dp~~al~a~-~~G-~~--v~~Leell~-~aD  405 (718)
                      .|.+++||+|.|.|+|++|+.+|+.|..+|++|+ +.|.          |+....+.. ..| ..  ..+-++++. .+|
T Consensus       212 ~g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~D  291 (419)
T 3aoe_E          212 RGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAE  291 (419)
T ss_dssp             HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCS
T ss_pred             cCCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCce
Confidence            4678999999999999999999999999999998 6665          222111111 111 10  122244443 799


Q ss_pred             EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      |++.|. ..+.|+.+....++.. +++..+...
T Consensus       292 VliP~A-~~n~i~~~~A~~l~ak-~V~EgAN~p  322 (419)
T 3aoe_E          292 VLVLAA-REGALDGDRARQVQAQ-AVVEVANFG  322 (419)
T ss_dssp             EEEECS-CTTCBCHHHHTTCCCS-EEEECSTTC
T ss_pred             EEEecc-cccccccchHhhCCce-EEEECCCCc
Confidence            999885 4568999999988654 666666543

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.60  E-value=0.004  Score=66.48  Aligned_cols=91  Identities=18%  Similarity=0.209  Sum_probs=67.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.++     ..|+++.++
T Consensus       190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~  269 (374)
T 2jhf_A          190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVI  269 (374)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECC
Confidence            368999999999999999999999999 899998877664444444542 21       2333332     479999988


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      +....+ ...++.++++ ..++.+|..
T Consensus       270 g~~~~~-~~~~~~l~~~~G~iv~~G~~  295 (374)
T 2jhf_A          270 GRLDTM-VTALSCCQEAYGVSVIVGVP  295 (374)
T ss_dssp             CCHHHH-HHHHHHBCTTTCEEEECSCC
T ss_pred             CCHHHH-HHHHHHhhcCCcEEEEeccC
Confidence            763333 3568889999 999998864

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.59  E-value=0.0036  Score=67.32  Aligned_cols=69  Identities=16%  Similarity=0.188  Sum_probs=49.6

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---ecC---HHHHhccCcEEEEcCC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---VTT---MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---v~~---Leell~~aDiIi~atg  412 (718)
                      .-+.||+|+|+|.|.+|+.+++.++.+|.+|+++|.++........+.+.   +.+   +.++++.+|+|+...+
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~~~e   84 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTYEFE   84 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEESCC
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeeeccc
Confidence            34789999999999999999999999999999998776432111111111   122   5678889999865443

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.57  E-value=0.0021  Score=67.84  Aligned_cols=91  Identities=18%  Similarity=0.177  Sum_probs=67.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHHHh----ccCcEEEEcCCCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEEAA----KEGGIFVTTTGCKDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Leell----~~aDiIi~atgt~~l  416 (718)
                      .|++|.|+|.|.||..+++.++.+|++|+++++++.+...+...|.. +.     ++.+.+    ...|+++.+.+....
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~~  243 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  243 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHHH
Confidence            58999999999999999999999999999998877654333334532 11     222222    357999988876333


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCC
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      + ...++.|+++..++++|...
T Consensus       244 ~-~~~~~~l~~~G~~v~~g~~~  264 (339)
T 1rjw_A          244 F-QSAYNSIRRGGACVLVGLPP  264 (339)
T ss_dssp             H-HHHHHHEEEEEEEEECCCCS
T ss_pred             H-HHHHHHhhcCCEEEEecccC
Confidence            2 45678899999999998754

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=96.56  E-value=0.0026  Score=70.73  Aligned_cols=85  Identities=20%  Similarity=0.215  Sum_probs=58.9

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----------cC-----------ce-ecCHHHHhccC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----------EG-----------YE-VTTMEEAAKEG  404 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----------~G-----------~~-v~~Leell~~a  404 (718)
                      =++|+|||.|.+|..+|..+...|.+|+++|+++.....+..           .|           .. ..++ +.++++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a  115 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV  115 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence            468999999999999999999999999999988753221110           11           11 2345 567899


Q ss_pred             cEEEEcCCCCC----CcCHHHHhcCCCCeEEEE
Q psy7896         405 GIFVTTTGCKD----IIRGEHFLQMRDDAIVCN  433 (718)
Q Consensus       405 DiIi~atgt~~----lI~~e~l~~MK~gAiLIN  433 (718)
                      |+|+.+....-    -+-.+....++++++|+.
T Consensus       116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~s  148 (463)
T 1zcj_A          116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCT  148 (463)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred             CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEe
Confidence            99999865421    111223346889998885

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=96.55  E-value=0.037  Score=58.69  Aligned_cols=185  Identities=16%  Similarity=0.127  Sum_probs=116.7

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+-=+++.+.+      +...|-+||+.|.+.--.. +.   -+.|+... ---.+...++--+++|++.-.+...=.|+
T Consensus        61 LGg~~i~l~~~------~ss~~kgEsl~DTarvls~-~~---D~iviR~~-~~~~~~~lA~~~~vPVINag~~~~HPtQa  129 (307)
T 3tpf_A           61 LGGKALFLSSN------DLQLSRGEPVKDTARVIGA-MV---DFVMMRVN-KHETLLEFARYSKAPVINALSELYHPTQV  129 (307)
T ss_dssp             TTCEEEEECTT------TCCTTTSSCHHHHHHHHHH-HS---SEEEEECS-CHHHHHHHHHHCSSCEEEEECSSCCHHHH
T ss_pred             cCCeEEEcCcc------cccCCCCCCHHHHHHHHHH-hC---CEEEEecC-ChHHHHHHHHhCCCCEEeCCCCCcCcHHH
Confidence            44445555443      2234667998876653222 21   23344322 22233344455678999876665555677


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccccc-CcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCcc---
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLA-GKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPIN---  383 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~-GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~---  383 (718)
                      .++-|.+-+                       ..| .+. |++|++||=+ ++....+..+..||++|.++-+....   
T Consensus       130 LaDl~Ti~e-----------------------~~g-~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~  185 (307)
T 3tpf_A          130 LGDLFTIKE-----------------------WNK-MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISP  185 (307)
T ss_dssp             HHHHHHHHH-----------------------TTC-CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCH
T ss_pred             HHHHHHHHH-----------------------HhC-CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCH
Confidence            666655422                       112 478 9999999974 58888888999999999997543221   


Q ss_pred             HH-H-H----hhcCce---ecCHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC-
Q psy7896         384 AL-Q-A----SMEGYE---VTTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF-  437 (718)
Q Consensus       384 al-~-a----~~~G~~---v~~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg-  437 (718)
                      .. + +    ...|..   ..+++|+++.+|+|.+..    +            ...-++.+.++.+|+++++.-++-. 
T Consensus       186 ~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~  265 (307)
T 3tpf_A          186 EIWEFAMKQALISGAKISLGYDKFEALKDKDVVITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAY  265 (307)
T ss_dssp             HHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCC
T ss_pred             HHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCC
Confidence            11 1 1    123432   358999999999998753    1            1245899999999999999999752 


Q ss_pred             -CccccHHHHhc
Q psy7896         438 -DCEIQVSWLDK  448 (718)
Q Consensus       438 -d~Eid~~aL~~  448 (718)
                       +.||+.+-+..
T Consensus       266 Rg~EI~~eV~d~  277 (307)
T 3tpf_A          266 RGYEVSEEIFEK  277 (307)
T ss_dssp             BTTTBCHHHHHH
T ss_pred             CCceeCHHHhCC
Confidence             35787654443

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=96.54  E-value=0.0027  Score=65.74  Aligned_cols=88  Identities=20%  Similarity=0.200  Sum_probs=64.4

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecC------HHHHhccCcEEEEcCCCCCCcC
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTT------MEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~------Leell~~aDiIi~atgt~~lI~  418 (718)
                      .|++|.|+|. |.||+.+++.++.+|++|+++++++.+...+...|.. +.+      +.+.++..|+++. .|.. . -
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~~-~-~  201 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRGK-E-V  201 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSCT-T-H
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCHH-H-H
Confidence            6899999998 9999999999999999999999877654333334542 212      2223356899999 8773 2 3


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...++.|+++..++++|..
T Consensus       202 ~~~~~~l~~~G~~v~~g~~  220 (302)
T 1iz0_A          202 EESLGLLAHGGRLVYIGAA  220 (302)
T ss_dssp             HHHHTTEEEEEEEEEC---
T ss_pred             HHHHHhhccCCEEEEEeCC
Confidence            5678899999999999864

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=96.54  E-value=0.0032  Score=67.09  Aligned_cols=90  Identities=23%  Similarity=0.188  Sum_probs=66.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHh----c--cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAA----K--EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell----~--~aDiIi~atgt  413 (718)
                      -.|++|.|+|.|.||..+++.++.+|++|++++.++.+...+...|...      .++.+.+    .  ..|+++.+.|.
T Consensus       188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~~~g~g~D~vid~~g~  267 (363)
T 3uog_A          188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGADHGINRLEEDWVERVYALTGDRGADHILEIAGG  267 (363)
T ss_dssp             CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEEETTS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCCh
Confidence            3689999999999999999999999999999988776543343345421      1232222    1  57999988884


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .  .-...++.++++..++.+|..
T Consensus       268 ~--~~~~~~~~l~~~G~iv~~G~~  289 (363)
T 3uog_A          268 A--GLGQSLKAVAPDGRISVIGVL  289 (363)
T ss_dssp             S--CHHHHHHHEEEEEEEEEECCC
T ss_pred             H--HHHHHHHHhhcCCEEEEEecC
Confidence            2  234678899999999999864

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=96.53  E-value=0.0038  Score=65.66  Aligned_cols=89  Identities=16%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------------cCHHHHhccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------------TTMEEAAKEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------------~~Leell~~aDiIi~a  410 (718)
                      ....++|+|||.|.+|..+|..|..-|.+|+++ +++.........|...              .+.++ ++.+|+|+++
T Consensus        16 ~~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vila   93 (318)
T 3hwr_A           16 YFQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFC   93 (318)
T ss_dssp             ----CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEEC
T ss_pred             hccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEE
Confidence            345689999999999999999999999999999 7764332222233221              23433 5789999998


Q ss_pred             CCCCCCcCHHHH----hcCCCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHF----LQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l----~~MK~gAiLIN~GRg  437 (718)
                      +....+  .+.+    ..++++.+++.+.-|
T Consensus        94 vk~~~~--~~~l~~l~~~l~~~~~iv~~~nG  122 (318)
T 3hwr_A           94 VKSTDT--QSAALAMKPALAKSALVLSLQNG  122 (318)
T ss_dssp             CCGGGH--HHHHHHHTTTSCTTCEEEEECSS
T ss_pred             cccccH--HHHHHHHHHhcCCCCEEEEeCCC
Confidence            776533  2333    346778888887665

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=96.52  E-value=0.0079  Score=61.54  Aligned_cols=38  Identities=29%  Similarity=0.288  Sum_probs=34.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ...+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       170 ~~~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~  207 (338)
T 3itj_A          170 IFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDH  207 (338)
T ss_dssp             GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             hcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCc
Confidence            45689999999999999999999999999999987653

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=96.51  E-value=0.0028  Score=70.72  Aligned_cols=91  Identities=19%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEec-------CCc---c--HHHHhhc--------------Ccee
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEI-------DPI---N--ALQASME--------------GYEV  394 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~-------dp~---~--al~a~~~--------------G~~v  394 (718)
                      .|.++.|+||.|.|+|++|+.+|+.|..+|++|+ +.|.       +.+   .  .+.....              +.++
T Consensus       246 ~G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~~a~~  325 (470)
T 2bma_A          246 LNIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSSTAKY  325 (470)
T ss_dssp             TTCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCSSCEE
T ss_pred             ccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcCCcEE
Confidence            3678999999999999999999999999999988 5553       222   1  1111000              2233


Q ss_pred             cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcC-CCCeEEEE
Q psy7896         395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQM-RDDAIVCN  433 (718)
Q Consensus       395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~M-K~gAiLIN  433 (718)
                      .+-++++ -.|||++.|. +.+.|+.+....+ ++++.+|-
T Consensus       326 v~~~~~~~~~~DI~iPcA-~~~~I~~~na~~l~~~~ak~V~  365 (470)
T 2bma_A          326 FPNEKPWGVPCTLAFPCA-TQNDVDLDQAKLLQKNGCILVG  365 (470)
T ss_dssp             CSSCCTTSSCCSEEEECS-STTCBCSHHHHHHHHTTCCEEE
T ss_pred             ecCcCeeecCccEEEecc-ccCcCCHHHHHHHHhcCcEEEE
Confidence            3223443 3789999876 4568888887777 33444443

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.50  E-value=0.0022  Score=61.91  Aligned_cols=90  Identities=13%  Similarity=0.158  Sum_probs=62.9

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHH-Hh-----ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEE-AA-----KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Lee-ll-----~~aDiIi~atg  412 (718)
                      -.|++|.|+| .|.||+.+++.++..|++|+++++++.+...+...|.. +.     +..+ +.     ...|+++.+.+
T Consensus        37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g  116 (198)
T 1pqw_A           37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  116 (198)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEeeCCcHHHHHHHHHHhCCCCCeEEEECCc
Confidence            3689999999 69999999999999999999998876543223233432 11     1222 21     13688888776


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..  .....++.|+++..++++|..
T Consensus       117 ~~--~~~~~~~~l~~~G~~v~~g~~  139 (198)
T 1pqw_A          117 GE--AIQRGVQILAPGGRFIELGKK  139 (198)
T ss_dssp             TH--HHHHHHHTEEEEEEEEECSCG
T ss_pred             hH--HHHHHHHHhccCCEEEEEcCC
Confidence            32  234567888999999998864

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=96.50  E-value=0.004  Score=66.40  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=67.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.       ++.+.++     ..|+++.++
T Consensus       189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~  268 (373)
T 2fzw_A          189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECI  268 (373)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECC
Confidence            368999999999999999999999999 899998877664333334532 21       2333333     479999988


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      +....+ ...++.++++ ..++.+|..
T Consensus       269 g~~~~~-~~~~~~l~~~~G~iv~~G~~  294 (373)
T 2fzw_A          269 GNVKVM-RAALEACHKGWGVSVVVGVA  294 (373)
T ss_dssp             CCHHHH-HHHHHTBCTTTCEEEECSCC
T ss_pred             CcHHHH-HHHHHhhccCCcEEEEEecC
Confidence            763332 4568899999 999999864

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=96.50  E-value=0.0034  Score=67.23  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=68.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee-c-------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV-T-------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v-~-------~Leell~-----~aDiIi~at  411 (718)
                      -.|.+|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|... .       ++.+.++     ..|+++.++
T Consensus       192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~  271 (378)
T 3uko_A          192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECI  271 (378)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECC
Confidence            368999999999999999999999999 8999998887654455556431 1       2333332     379999998


Q ss_pred             CCCCCcCHHHHhcCCCC-eEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDD-AIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~g-AiLIN~GRg  437 (718)
                      |....+ ...++.++++ ..++.+|-.
T Consensus       272 g~~~~~-~~~~~~l~~g~G~iv~~G~~  297 (378)
T 3uko_A          272 GNVSVM-RAALECCHKGWGTSVIVGVA  297 (378)
T ss_dssp             CCHHHH-HHHHHTBCTTTCEEEECSCC
T ss_pred             CCHHHH-HHHHHHhhccCCEEEEEccc
Confidence            874333 3578899996 999998864

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.49  E-value=0.01  Score=69.34  Aligned_cols=115  Identities=16%  Similarity=0.075  Sum_probs=71.9

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh----hhhhh---hhhHHH---HHHHHHH---hccccc-
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA----SMEGY---ELDEEV---AALHLEH---LGVKLT-  332 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A----vaeGf---~L~r~i---~~~~l~~---lgv~~~-  332 (718)
                      ...++|+|||.|+.|+.+|..|+++|+.|+++|..+....+.    ...++   ....+.   ....+..   .++.+. 
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~  466 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALG  466 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEECS
T ss_pred             cCCceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEEEe
Confidence            356899999999999999999999999999999865422111    11121   111111   0111100   012210 


Q ss_pred             -c---------c----------chh---------hhhhh-----------------cccccCcEEEEEe--cChhHHHHH
Q psy7896         333 -K---------L----------TED---------QAKYL-----------------DIMLAGKVAVVAG--YGDVGKGCA  364 (718)
Q Consensus       333 -~---------~----------~~~---------~~~~~-----------------g~eL~GktVGIIG--~G~IG~~vA  364 (718)
                       +         .          ...         .....                 +....|++|.|||  .|.+|..+|
T Consensus       467 ~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~GgG~~g~e~A  546 (729)
T 1o94_A          467 QKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLA  546 (729)
T ss_dssp             CCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCCSSHHHHHH
T ss_pred             CeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCCCchHHHHH
Confidence             0         0          000         00000                 1223589999999  899999999


Q ss_pred             HHHHhCCCEEEEEecCC
Q psy7896         365 QSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       365 ~~l~~fGa~Viv~d~dp  381 (718)
                      ..|+.+|.+|+++++.+
T Consensus       547 ~~l~~~G~~Vtlv~~~~  563 (729)
T 1o94_A          547 EKLATAGHEVTIVSGVH  563 (729)
T ss_dssp             HHHHHTTCEEEEEESSC
T ss_pred             HHHHHcCCEEEEEeccc
Confidence            99999999999998766

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=96.49  E-value=0.0025  Score=67.06  Aligned_cols=92  Identities=22%  Similarity=0.198  Sum_probs=67.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHhc----cCcEEEEcCCCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAAK----EGGIFVTTTGCKD  415 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell~----~aDiIi~atgt~~  415 (718)
                      -.|++|.|+|.|.||..+++.++.+|++|++++.++.+...+...|...      .++.+.++    ..|+++.+++...
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~  244 (340)
T 3s2e_A          165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK  244 (340)
T ss_dssp             CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH
Confidence            4689999999999999999999999999999988776544444445431      13333332    5788888876543


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .+ ...++.++++..++.+|...
T Consensus       245 ~~-~~~~~~l~~~G~iv~~G~~~  266 (340)
T 3s2e_A          245 AF-SQAIGMVRRGGTIALNGLPP  266 (340)
T ss_dssp             HH-HHHHHHEEEEEEEEECSCCS
T ss_pred             HH-HHHHHHhccCCEEEEeCCCC
Confidence            33 35678899999999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.49  E-value=0.0033  Score=67.24  Aligned_cols=114  Identities=18%  Similarity=0.233  Sum_probs=68.9

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh-----hhhhhhhhhhhHHH---HHHHHHHhcccccc------
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-----LQASMEGYELDEEV---AALHLEHLGVKLTK------  333 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~-----v~AvaeGf~L~r~i---~~~~l~~lgv~~~~------  333 (718)
                      +|..++|||.|+.|..+|..|+++| +|+++|..+...     ......+..-..++   ....+...++++-.      
T Consensus         7 ~~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~v~~~~g~~v~~   85 (367)
T 1xhc_A            7 HGSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL   85 (367)
T ss_dssp             --CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred             CCCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCCCCccccchhHHHHhCCCCHHHhccCCHHHHHhCCcEEEECCEEEE
Confidence            7899999999999999999999999 999999776421     00111111000000   00111122222100      


Q ss_pred             --------------c-----------chhhhhhhc-------------ccc-----cCcEEEEEecChhHHHHHHHHHhC
Q psy7896         334 --------------L-----------TEDQAKYLD-------------IML-----AGKVAVVAGYGDVGKGCAQSLRLF  370 (718)
Q Consensus       334 --------------~-----------~~~~~~~~g-------------~eL-----~GktVGIIG~G~IG~~vA~~l~~f  370 (718)
                                    .           .+......|             ..+     .+++|.|||.|.+|..+|..++.+
T Consensus        86 id~~~~~V~~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~~l~~~  165 (367)
T 1xhc_A           86 IDRGRKVVITEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKESIENSGEAIIIGGGFIGLELAGNLAEA  165 (367)
T ss_dssp             EETTTTEEEESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHHHHHHSEEEEEECSHHHHHHHHHHHHT
T ss_pred             EECCCCEEEECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHHhhcCCcEEEECCCHHHHHHHHHHHhC
Confidence                          0           000000001             012     469999999999999999999999


Q ss_pred             CCEEEEEecCCc
Q psy7896         371 GSRVIVTEIDPI  382 (718)
Q Consensus       371 Ga~Viv~d~dp~  382 (718)
                      |.+|+++++.+.
T Consensus       166 g~~Vtlv~~~~~  177 (367)
T 1xhc_A          166 GYHVKLIHRGAM  177 (367)
T ss_dssp             TCEEEEECSSSC
T ss_pred             CCEEEEEeCCCe
Confidence            999999987653

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=96.46  E-value=0.0041  Score=65.83  Aligned_cols=91  Identities=16%  Similarity=0.177  Sum_probs=66.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e---c---C-HHHH---h-----ccCcEEEE
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V---T---T-MEEA---A-----KEGGIFVT  409 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v---~---~-Leel---l-----~~aDiIi~  409 (718)
                      -.|++|.|+|.|.||..+++.++.+|++|++++.++.+...+...|.. +   .   + .+++   .     +..|+++.
T Consensus       167 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid  246 (352)
T 1e3j_A          167 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  246 (352)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEE
Confidence            368999999999999999999999999999998877654333334532 1   1   1 2222   2     24899999


Q ss_pred             cCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         410 TTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       410 atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +++....+ ...++.++++..++.+|..
T Consensus       247 ~~g~~~~~-~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          247 CSGNEKCI-TIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             CSCCHHHH-HHHHHHSCTTCEEEECSCC
T ss_pred             CCCCHHHH-HHHHHHHhcCCEEEEEecC
Confidence            88764322 3568899999999999864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=96.46  E-value=0.0024  Score=68.49  Aligned_cols=91  Identities=20%  Similarity=0.232  Sum_probs=67.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-----cCHHHHhcc--------CcEEEEc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-----TTMEEAAKE--------GGIFVTT  410 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-----~~Leell~~--------aDiIi~a  410 (718)
                      -.|++|.|+|.|.||...++.++.+|+ +|++++.++.+...+...|.. +     .++.+.+++        .|+++.+
T Consensus       181 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~  260 (370)
T 4ej6_A          181 KAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIEC  260 (370)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEEC
Confidence            368999999999999999999999999 899998877654333344543 1     234444443        7999988


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +|....+ ...++.++++..++.+|..
T Consensus       261 ~G~~~~~-~~~~~~l~~~G~vv~~G~~  286 (370)
T 4ej6_A          261 AGVAETV-KQSTRLAKAGGTVVILGVL  286 (370)
T ss_dssp             SCCHHHH-HHHHHHEEEEEEEEECSCC
T ss_pred             CCCHHHH-HHHHHHhccCCEEEEEecc
Confidence            8764333 3567889999999999864

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.44  E-value=0.0041  Score=66.00  Aligned_cols=91  Identities=19%  Similarity=0.269  Sum_probs=66.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec--C---HH----HHh----ccCcEEEEc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT--T---ME----EAA----KEGGIFVTT  410 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~--~---Le----ell----~~aDiIi~a  410 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +.  +   -+    ++.    +..|+++.+
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~  249 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  249 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEEC
Confidence            368999999999999999999999999 999998877654333344542 11  1   11    221    248999998


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ++....+ ...++.++++..++.+|..
T Consensus       250 ~g~~~~~-~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          250 TGAEASI-QAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             SCCHHHH-HHHHHHSCTTCEEEECSCC
T ss_pred             CCChHHH-HHHHHHhcCCCEEEEEecC
Confidence            8764332 3568899999999999864

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=96.43  E-value=0.054  Score=58.22  Aligned_cols=171  Identities=16%  Similarity=0.077  Sum_probs=106.7

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+.|.+.--.. +  .. +.|+. .+-.-.+...++--+++|++.-.+...=.|+.++-|.+-+           
T Consensus       109 ~~kgEsl~DTarvLs~-y--~D-~IviR-~~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E-----------  172 (340)
T 4ep1_A          109 MGRGETVSDTAKVLSH-Y--ID-GIMIR-TFSHADVEELAKESSIPVINGLTDDHHPCQALADLMTIYE-----------  172 (340)
T ss_dssp             ----CCTTHHHHHHHH-H--CS-EEEEE-CSCHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHH-----------
T ss_pred             CCCCCCHHHHHHHHHH-h--CC-EEEEe-cCChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHH-----------
Confidence            4567887765542211 1  12 33333 2322333444566678998876665555667666665432           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCc--e-ec
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGY--E-VT  395 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~--~-v~  395 (718)
                                  ..| .+.|++|++||-| ++.+..+..+..||++|.++-+....   .. +     +...|.  . ..
T Consensus       173 ------------~~G-~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~  239 (340)
T 4ep1_A          173 ------------ETN-TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILH  239 (340)
T ss_dssp             ------------HHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEES
T ss_pred             ------------HhC-CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEC
Confidence                        112 4889999999975 58888888899999999997543221   11 0     112342  2 35


Q ss_pred             CHHHHhccCcEEEEcC----CC-----------CCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         396 TMEEAAKEGGIFVTTT----GC-----------KDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       396 ~Leell~~aDiIi~at----gt-----------~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      +++|+++.+|||.+..    +.           ..-++.+.++.+|+++++.-++-.  +.||+.+-+..
T Consensus       240 d~~eav~~aDVvyt~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~  309 (340)
T 4ep1_A          240 NPELAVNEADFIYTDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGEIIDG  309 (340)
T ss_dssp             CHHHHHTTCSEEEECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHHHHTS
T ss_pred             CHHHHhCCCCEEEecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHHHhCC
Confidence            8999999999998742    11           235899999999999999999842  35787655443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=96.43  E-value=0.0078  Score=63.16  Aligned_cols=87  Identities=15%  Similarity=0.083  Sum_probs=61.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc----------e------ecCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY----------E------VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~----------~------v~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|.+|..+|..|..-|.+|+++++++...+.  ..|.          .      ..+.+++.+.+|+|++++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i~--~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK   80 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSDYETVK--AKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIK   80 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTTHHHHH--HHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCChHHHHH--hCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecC
Confidence            58999999999999999999999999999988742222  1222          1      1345666668999999877


Q ss_pred             CCCCcCH-HHH-hcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRG-EHF-LQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~-e~l-~~MK~gAiLIN~GRg  437 (718)
                      ...+-.. +.+ ..++++.+++.+.-|
T Consensus        81 ~~~~~~~l~~l~~~l~~~t~Iv~~~nG  107 (320)
T 3i83_A           81 VVEGADRVGLLRDAVAPDTGIVLISNG  107 (320)
T ss_dssp             CCTTCCHHHHHTTSCCTTCEEEEECSS
T ss_pred             CCChHHHHHHHHhhcCCCCEEEEeCCC
Confidence            6554331 122 356778888877554

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.40  E-value=0.041  Score=58.42  Aligned_cols=185  Identities=16%  Similarity=0.104  Sum_probs=115.6

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+-=+++.+.+      +...|-+||+.|.+.--.. +  . -+.|+.. +.--.+...++--+++|++.-.+...=.|+
T Consensus        70 LGg~~i~l~~~------~ss~~kgEsl~DTarvls~-~--~-D~iviR~-~~~~~~~~lA~~~~vPVINag~~~~HPtQa  138 (309)
T 4f2g_A           70 LGGHAVFMSTR------DTQLGRGEPVEDSAQVISR-M--V-DIIMIRT-FEQDIIQRFAENSRVPVINGLTNEYHPCQV  138 (309)
T ss_dssp             TTCEEEEECCS------SCEETBEECHHHHHHHHHH-H--C-SEEEEEC-SCHHHHHHHHHTCSSCEEEEECSSCCHHHH
T ss_pred             cCCeEEEcCcc------cccCCCCCCHHHHHHHHHH-h--C-CEEEEec-CCHHHHHHHHHhCCCCEEECCCCccCcHHH
Confidence            44445555543      2234667998876553212 2  1 2333332 222233334455678999877666666677


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCcc---H
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPIN---A  384 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~---a  384 (718)
                      .++-|.+-+                       ..| .+.|++|++||=| ++....+..+..||++|.++-+....   .
T Consensus       139 LaDl~Ti~e-----------------------~~g-~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~  194 (309)
T 4f2g_A          139 LADIFTYYE-----------------------HRG-PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAK  194 (309)
T ss_dssp             HHHHHHHHH-----------------------HHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGG
T ss_pred             HHHHHHHHH-----------------------HhC-CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHH
Confidence            777665432                       112 4889999999975 58888888899999999997542221   1


Q ss_pred             HHHhhcC--ce-ecCHHHHhccCcEEEEcC----CC------------CCCcCHHHHhcCCCCeEEEEcCCC--CccccH
Q psy7896         385 LQASMEG--YE-VTTMEEAAKEGGIFVTTT----GC------------KDIIRGEHFLQMRDDAIVCNIGHF--DCEIQV  443 (718)
Q Consensus       385 l~a~~~G--~~-v~~Leell~~aDiIi~at----gt------------~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~  443 (718)
                      ..+...|  +. ..+++|+++.+|+|.+..    +.            ..-++.+.++.+|+++++.-++-.  +.||+.
T Consensus       195 ~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~  274 (309)
T 4f2g_A          195 LVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTA  274 (309)
T ss_dssp             GSCGGGGGGEEECSSHHHHTTTCSEEEECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCH
T ss_pred             HHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecH
Confidence            1111123  22 358999999999998742    11            235899999999999999999752  357876


Q ss_pred             HHHhc
Q psy7896         444 SWLDK  448 (718)
Q Consensus       444 ~aL~~  448 (718)
                      +-+..
T Consensus       275 eV~d~  279 (309)
T 4f2g_A          275 GVIDG  279 (309)
T ss_dssp             HHHTS
T ss_pred             HHhCC
Confidence            54443

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.39  E-value=0.002  Score=68.06  Aligned_cols=91  Identities=19%  Similarity=0.270  Sum_probs=66.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-----cCHHHHhc------cCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-----TTMEEAAK------EGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-----~~Leell~------~aDiIi~atgt  413 (718)
                      .|++|.|+|.|.||..+++.++.+|+ +|+++++++.+...+...|.. +     .++.+.++      ..|+++.+++.
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~  246 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGA  246 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence            89999999999999999999999999 999998877553333333432 1     13333332      47999988876


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ...+ ...++.|+++..++++|...
T Consensus       247 ~~~~-~~~~~~l~~~G~iv~~g~~~  270 (348)
T 2d8a_A          247 PKAL-EQGLQAVTPAGRVSLLGLYP  270 (348)
T ss_dssp             HHHH-HHHHHHEEEEEEEEECCCCS
T ss_pred             HHHH-HHHHHHHhcCCEEEEEccCC
Confidence            3332 35678899999999998643

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=96.39  E-value=0.0043  Score=65.56  Aligned_cols=90  Identities=17%  Similarity=0.230  Sum_probs=64.2

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-----cCHHHHhc------cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-----TTMEEAAK------EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-----~~Leell~------~aDiIi~atgt  413 (718)
                      -.|++|.|+|. |.||..+++.++.+|++|++++.++.+...+...|...     .++.+.++      ..|+++.+.|.
T Consensus       158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~  237 (342)
T 4eye_A          158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGG  237 (342)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC-
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCch
Confidence            46899999998 99999999999999999999988776543333334322     12333221      47999988886


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .  .-...+..|+++..++.+|..
T Consensus       238 ~--~~~~~~~~l~~~G~iv~~G~~  259 (342)
T 4eye_A          238 P--AFDDAVRTLASEGRLLVVGFA  259 (342)
T ss_dssp             ---CHHHHHHTEEEEEEEEEC---
T ss_pred             h--HHHHHHHhhcCCCEEEEEEcc
Confidence            4  234678899999999999864

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=96.38  E-value=0.0035  Score=66.23  Aligned_cols=86  Identities=13%  Similarity=0.079  Sum_probs=60.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------------cCHHHHhccCcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------------~~Leell~~aDiIi~atgt  413 (718)
                      .++|+|||.|.+|..+|..|...|.+|+++++++ ........|..+              .+.++ ++.+|+|++++.+
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~   80 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGA-TLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA   80 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHH-HHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChH-HHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc
Confidence            4689999999999999999999999999998753 221222344322              35665 5889999998765


Q ss_pred             CCCcCHHHHh----cCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFL----QMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~----~MK~gAiLIN~GRg  437 (718)
                      ..+  .+.++    .++++++++.+.-|
T Consensus        81 ~~~--~~~~~~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           81 PAL--ESVAAGIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             HHH--HHHHGGGSSSCCTTCEEEECCSS
T ss_pred             hhH--HHHHHHHHhhCCCCCEEEEECCC
Confidence            322  22333    45678888877655

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.37  E-value=0.0059  Score=66.60  Aligned_cols=36  Identities=19%  Similarity=0.186  Sum_probs=33.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       147 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  182 (449)
T 3kd9_A          147 KVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGER  182 (449)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCc
Confidence            678999999999999999999999999999987653

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=96.35  E-value=0.0039  Score=69.31  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=59.0

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEE-EEecC-----C--cc--HHH------Hh-----------hcCcee
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI-VTEID-----P--IN--ALQ------AS-----------MEGYEV  394 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi-v~d~d-----p--~~--al~------a~-----------~~G~~v  394 (718)
                      .+.+++|+||.|.|+|++|+.+|+.|..+|++|+ +.|.+     |  ..  .+.      ..           ..+.++
T Consensus       233 ~g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a~~  312 (456)
T 3r3j_A          233 LNDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKY  312 (456)
T ss_dssp             TTCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSCEE
T ss_pred             cCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCceE
Confidence            3778999999999999999999999999999986 66632     1  11  111      00           012334


Q ss_pred             cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcC
Q psy7896         395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQM  425 (718)
Q Consensus       395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~M  425 (718)
                      .+-++++ -.|||++.|.. .+.|+.+...++
T Consensus       313 v~~~~i~~~~~DI~iPcA~-~~~I~~~na~~l  343 (456)
T 3r3j_A          313 FENQKPWNIPCDIAFPCAT-QNEINENDADLF  343 (456)
T ss_dssp             ECSCCGGGSCCSEEEECSC-TTCBCHHHHHHH
T ss_pred             eCCccccccCccEEEeCCC-ccchhhHHHHHH
Confidence            4445554 36999998765 468999988887

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=96.35  E-value=0.0028  Score=74.31  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=61.6

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------ce-ecCHHHHhc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YE-VTTMEEAAK  402 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~-v~~Leell~  402 (718)
                      =++|+|||.|.+|..+|..+...|.+|+++|+++.....+           ...|             .. ..++ +.++
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~  392 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFG  392 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGG
T ss_pred             CCEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHC
Confidence            4689999999999999999999999999999987543221           1123             11 2345 6788


Q ss_pred             cCcEEEEcCCCCC----CcCHHHHhcCCCCeEEE-EcCC
Q psy7896         403 EGGIFVTTTGCKD----IIRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       403 ~aDiIi~atgt~~----lI~~e~l~~MK~gAiLI-N~GR  436 (718)
                      +||+||.+....-    .+-.+..+.++++++|+ |++.
T Consensus       393 ~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt  431 (715)
T 1wdk_A          393 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST  431 (715)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC
Confidence            9999999855321    12223345689999887 6654

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=96.34  E-value=0.0028  Score=67.03  Aligned_cols=99  Identities=18%  Similarity=0.206  Sum_probs=69.2

Q ss_pred             cCcEEEEE-ecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-c----CHHHHhc-----cCcEEEEcCCCCC
Q psy7896         347 AGKVAVVA-GYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-T----TMEEAAK-----EGGIFVTTTGCKD  415 (718)
Q Consensus       347 ~GktVGII-G~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~----~Leell~-----~aDiIi~atgt~~  415 (718)
                      .|++|.|+ |.|.||..+++.++.+|++|++++.++.+...+...|... .    ++.+.++     ..|+++.+++...
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~g~Dvv~d~~g~~~  229 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGADIVLNHKESLLNQFKTQGIELVDYVFCTFNTDM  229 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTCSEEECTTSCHHHHHHHHTCCCEEEEEESSCHHH
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEEECCccHHHHHHHhCCCCccEEEECCCchH
Confidence            69999999 7999999999999999999999988765543333344321 1    2333322     4799988877532


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCCccccHHHH
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWL  446 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL  446 (718)
                      .+ ...++.++++..++.++.....++...+
T Consensus       230 ~~-~~~~~~l~~~G~iv~~~~~~~~~~~~~~  259 (346)
T 3fbg_A          230 YY-DDMIQLVKPRGHIATIVAFENDQDLNAL  259 (346)
T ss_dssp             HH-HHHHHHEEEEEEEEESSCCSSCBCGGGG
T ss_pred             HH-HHHHHHhccCCEEEEECCCCCCCccccc
Confidence            22 3567889999999988765444554433

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=96.33  E-value=0.071  Score=56.93  Aligned_cols=171  Identities=18%  Similarity=0.102  Sum_probs=108.7

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+.|.+.--.. +  . -+.|+.. +---.+...++.-+++|++.-.+...=.|+.++-|.+-+           
T Consensus        87 ~~kgEsl~DTarvLs~-~--~-D~iviR~-~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e-----------  150 (323)
T 3gd5_A           87 VGRGEPVRDTARVLGR-Y--V-DGLAIRT-FAQTELEEYAHYAGIPVINALTDHEHPCQVVADLLTIRE-----------  150 (323)
T ss_dssp             ----CCHHHHHHHHTT-T--C-SEEEEEC-SSHHHHHHHHHHHCSCEEEEECSSCCHHHHHHHHHHHHH-----------
T ss_pred             CCCCCCHHHHHHHHHH-h--C-CEEEEec-CChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHH-----------
Confidence            4667998876654222 2  1 2334432 222233444566678998876666666677777665432           


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcC--ce-ec
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEG--YE-VT  395 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G--~~-v~  395 (718)
                                  ..| .+.|++|++||= +++....+..+..+|++|.++-+....   .. +     +...|  +. ..
T Consensus       151 ------------~~g-~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~  217 (323)
T 3gd5_A          151 ------------NFG-RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILR  217 (323)
T ss_dssp             ------------HHS-CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEES
T ss_pred             ------------HhC-CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEC
Confidence                        112 488999999997 468888888899999999997543221   11 0     11224  32 35


Q ss_pred             CHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         396 TMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       396 ~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      +++|+++.+|||.+..    +            ...-++.+.++.+|+++++.-++-.  +.||+.+-+..
T Consensus       218 d~~eav~~aDvvyt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~eV~d~  288 (323)
T 3gd5_A          218 DPFEAARGAHILYTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDEVMEG  288 (323)
T ss_dssp             CHHHHHTTCSEEEECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHHS
T ss_pred             CHHHHhcCCCEEEEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHHHhCC
Confidence            8999999999998741    1            1235899999999999999999752  35787665543

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.29  E-value=0.087  Score=56.88  Aligned_cols=182  Identities=19%  Similarity=0.121  Sum_probs=110.4

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+.|.+.--.. +  .. +.|+... ---.+..+++--+++|++.-.+...=.|++++-|.+-+        +.|
T Consensus       105 l~kgEsl~DTarvLs~-~--~D-~IviR~~-~~~~~~~lA~~s~vPVINag~d~~HPtQaLaDl~TI~E--------~~G  171 (353)
T 3sds_A          105 LGVNESLYDTSVVISS-M--VS-CIVARVG-PHSDIANLAKHSSVPVINALCDTFHPLQAIADFLTIHE--------SFA  171 (353)
T ss_dssp             -CCSSCHHHHHHHHHT-S--CS-EEEEECS-SHHHHHHHHHHCSSCEEEEECSSCCHHHHHHHHHHHHH--------HTC
T ss_pred             ccCCccHHHHHHHHHH-h--cC-EEEEEeC-ChHHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHH--------HhC
Confidence            4567998887664322 2  22 3334322 22234445566778999875555555677777665532        100


Q ss_pred             ccccccchh-hhhhhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc---HH-H---Hh----hcC--ce
Q psy7896         329 VKLTKLTED-QAKYLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q---AS----MEG--YE  393 (718)
Q Consensus       329 v~~~~~~~~-~~~~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~---al-~---a~----~~G--~~  393 (718)
                      .    ..+. ........|.|++|++||=++ +....+..+..||++|.++-+....   .. +   ..    ..|  +.
T Consensus       172 ~----~~~~~~~~~~~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~  247 (353)
T 3sds_A          172 S----QSATHGTHPSSLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLT  247 (353)
T ss_dssp             ------------CTTCCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEE
T ss_pred             C----CcccccccccccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEE
Confidence            0    0000 000112347999999999875 7888888889999999998543221   11 1   11    112  22


Q ss_pred             -ecCHHHHhccCcEEEEcC----C------------CCCCcCHHHHhc--CCCCeEEEEcCCCC-ccccHHHHh
Q psy7896         394 -VTTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQ--MRDDAIVCNIGHFD-CEIQVSWLD  447 (718)
Q Consensus       394 -v~~Leell~~aDiIi~at----g------------t~~lI~~e~l~~--MK~gAiLIN~GRgd-~Eid~~aL~  447 (718)
                       ..+++|+++.+|||.+.+    +            ...-|+.+.++.  +|++++|.-++-.. .||+.+-+.
T Consensus       248 ~~~d~~eav~~aDVvytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcLP~~~~EI~~eV~d  321 (353)
T 3sds_A          248 QTTVPEVAVKDADVIVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCLPRHPEEVSDEVFY  321 (353)
T ss_dssp             EESCHHHHTTTCSEEEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECSCCCTTTBCHHHHT
T ss_pred             EECCHHHHhcCCCEEEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCCCCCCCeECHHHhC
Confidence             358999999999998732    2            124689999998  99999999998543 577755444

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=96.28  E-value=0.011  Score=62.80  Aligned_cols=65  Identities=15%  Similarity=0.089  Sum_probs=48.9

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHH---hh-----c--C--cee-cCHHHHhccCcEEEEcCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQA---SM-----E--G--YEV-TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a---~~-----~--G--~~v-~~Leell~~aDiIi~atg  412 (718)
                      .++|+|||.|.+|..+|..+...|. +|.++|+++.+....   ..     .  .  +.. .++++.++.||+|+.+.+
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g   87 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   87 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccC
Confidence            4689999999999999999987787 899999988542210   00     1  1  222 578889999999999753

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=96.28  E-value=0.0089  Score=72.67  Aligned_cols=35  Identities=20%  Similarity=0.281  Sum_probs=32.2

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCc
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  302 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp  302 (718)
                      .+++|+|||.|+.|+.+|..|++.|. .|+++|..+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~  221 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE  221 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            47899999999999999999999999 799999764

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=96.28  E-value=0.054  Score=57.81  Aligned_cols=184  Identities=18%  Similarity=0.098  Sum_probs=117.3

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+-=++..+.+.+      ..|-+||+.|.+.--.. +  . -+.|+... .--.+...++--+++|++...+...=.|+
T Consensus        71 LGg~~i~l~~~~s------s~~kgEsl~DTarvls~-~--~-D~iviR~~-~~~~~~~lA~~~~vPVINa~~~~~HPtQa  139 (321)
T 1oth_A           71 LGGHPCFLTTQDI------HLGVNESLTDTARVLSS-M--A-DAVLARVY-KQSDLDTLAKEASIPIINGLSDLYHPIQI  139 (321)
T ss_dssp             TTCEEEEEETTTS------CBTTTBCHHHHHHHHHH-H--C-SEEEEECS-CHHHHHHHHHHCSSCEEESCCSSCCHHHH
T ss_pred             cCCeEEEECCCcC------cCCCCCCHHHHHHHHHH-h--C-CEEEEeCC-ChhHHHHHHHhCCCCEEcCCCCCCCcHHH
Confidence            4444555554332      23567998876653222 2  2 23444432 22223334445568999887766666777


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc---H
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN---A  384 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~---a  384 (718)
                      +++-|.+-+                       ..| .+.|++|++||=|+ +.+..+..+..||++|.++-+....   .
T Consensus       140 LaDl~Ti~e-----------------------~~g-~l~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~  195 (321)
T 1oth_A          140 LADYLTLQE-----------------------HYS-SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDAS  195 (321)
T ss_dssp             HHHHHHHHH-----------------------HHS-CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHH
T ss_pred             HHHHHHHHH-----------------------HhC-CcCCcEEEEECCchhhHHHHHHHHHHcCCeEEEECCccccCCHH
Confidence            777666532                       112 58999999999865 8888888888999999998543321   1


Q ss_pred             H-HH-----hhcC--ce-ecCHHHHhccCcEEEEcC----C------------CCCCcCHHHHhcCCCCeEEEEcCCCC-
Q psy7896         385 L-QA-----SMEG--YE-VTTMEEAAKEGGIFVTTT----G------------CKDIIRGEHFLQMRDDAIVCNIGHFD-  438 (718)
Q Consensus       385 l-~a-----~~~G--~~-v~~Leell~~aDiIi~at----g------------t~~lI~~e~l~~MK~gAiLIN~GRgd-  438 (718)
                      . +.     ...|  +. ..+++|+++.+|+|.+-+    +            ...-+|.+.++.+|+++++.-++-.. 
T Consensus       196 ~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l~~a~~dai~mH~lP~~r  275 (321)
T 1oth_A          196 VTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKP  275 (321)
T ss_dssp             HHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCCCT
T ss_pred             HHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHHhhcCCCCEEECCCCCCC
Confidence            1 10     1124  33 468999999999999832    2            12458999999999999999997532 


Q ss_pred             ccccHHHHh
Q psy7896         439 CEIQVSWLD  447 (718)
Q Consensus       439 ~Eid~~aL~  447 (718)
                      .||+.+-+.
T Consensus       276 ~EI~~eV~d  284 (321)
T 1oth_A          276 EEVDDEVFY  284 (321)
T ss_dssp             TTBCHHHHT
T ss_pred             cccCHHHhC
Confidence            677765444

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=96.27  E-value=0.0033  Score=66.53  Aligned_cols=91  Identities=15%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----CHHHHhc------cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----TMEEAAK------EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~Leell~------~aDiIi~atg  412 (718)
                      -.|.+|.|+|.|.||...++.++.+|+ +|++++.++.+...+...|.. +.     ++.+.++      ..|+++.+.+
T Consensus       165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g  244 (352)
T 3fpc_A          165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGG  244 (352)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSS
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCC
Confidence            368999999999999999999999999 899998877654333344543 11     2333221      4799998888


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....+ ...++.++++..++.+|..
T Consensus       245 ~~~~~-~~~~~~l~~~G~~v~~G~~  268 (352)
T 3fpc_A          245 DVHTF-AQAVKMIKPGSDIGNVNYL  268 (352)
T ss_dssp             CTTHH-HHHHHHEEEEEEEEECCCC
T ss_pred             ChHHH-HHHHHHHhcCCEEEEeccc
Confidence            75443 4678899999999999864

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.27  E-value=0.0055  Score=66.33  Aligned_cols=94  Identities=21%  Similarity=0.283  Sum_probs=67.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee------cCHHHHhc------cCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV------TTMEEAAK------EGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v------~~Leell~------~aDiIi~at  411 (718)
                      --.|.+|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|...      .++.+.++      ..|+++-++
T Consensus       211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~  290 (404)
T 3ip1_A          211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEAT  290 (404)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECC
Confidence            3468999999999999999999999999 8999988776544344445431      12333221      489999988


Q ss_pred             CCCCCcCHHHHhcC----CCCeEEEEcCCCC
Q psy7896         412 GCKDIIRGEHFLQM----RDDAIVCNIGHFD  438 (718)
Q Consensus       412 gt~~lI~~e~l~~M----K~gAiLIN~GRgd  438 (718)
                      |.....-...++.+    +++..++.+|...
T Consensus       291 g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~  321 (404)
T 3ip1_A          291 GVPQLVWPQIEEVIWRARGINATVAIVARAD  321 (404)
T ss_dssp             SCHHHHHHHHHHHHHHCSCCCCEEEECSCCC
T ss_pred             CCcHHHHHHHHHHHHhccCCCcEEEEeCCCC
Confidence            87522223345556    9999999998653

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=96.26  E-value=0.0029  Score=67.44  Aligned_cols=91  Identities=19%  Similarity=0.157  Sum_probs=66.2

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-----cCHHHHhc-----cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-----TTMEEAAK-----EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-----~~Leell~-----~aDiIi~atgt  413 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|++++.++.+...+...|.. +     .++.+.++     ..|+++.+++.
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~~~~gg~D~vid~~g~  268 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGS  268 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCCEEecCCccCHHHHHHHhcCCCCcEEEECCCC
Confidence            368999999999999999999999999 699998877654333334432 1     12333332     37999988876


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+ ...++.++++..++.+|..
T Consensus       269 ~~~~-~~~~~~l~~~G~iv~~G~~  291 (371)
T 1f8f_A          269 PEIL-KQGVDALGILGKIAVVGAP  291 (371)
T ss_dssp             HHHH-HHHHHTEEEEEEEEECCCC
T ss_pred             HHHH-HHHHHHHhcCCEEEEeCCC
Confidence            3222 3568889999999999864

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=96.25  E-value=0.0047  Score=65.24  Aligned_cols=91  Identities=15%  Similarity=0.101  Sum_probs=66.0

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e------cCHHHHhc-----cCcEEEEcCCC
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V------TTMEEAAK-----EGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v------~~Leell~-----~aDiIi~atgt  413 (718)
                      .|++|.|+|. |.||+.+++.++.+|++|+++++++.+...+...|.. +      .++.+.++     ..|+++.+++.
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~  248 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS  248 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence            6899999999 8999999999999999999998877654333333432 1      13444443     47999888775


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ... -...++.|+++..++++|...
T Consensus       249 ~~~-~~~~~~~l~~~G~iv~~g~~~  272 (347)
T 2hcy_A          249 EAA-IEASTRYVRANGTTVLVGMPA  272 (347)
T ss_dssp             HHH-HHHHTTSEEEEEEEEECCCCT
T ss_pred             HHH-HHHHHHHHhcCCEEEEEeCCC
Confidence            322 235678889999999998653

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=96.23  E-value=0.006  Score=65.64  Aligned_cols=92  Identities=28%  Similarity=0.393  Sum_probs=66.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceec-----C-HHHHhc------cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVT-----T-MEEAAK------EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~-----~-Leell~------~aDiIi~atg  412 (718)
                      -.|++|.|+|.|.||...++.++.+|+ +|++++.++.+...+...|..+.     + +.+.++      ..|+++-++|
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~v~~~t~g~g~Dvvid~~G  263 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  263 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCcEEccCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            368999999999999999999999999 79999887765444444554432     1 333221      4699998887


Q ss_pred             CCCC--------------cCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDI--------------IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~l--------------I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....              .-.+.++.++++..++.+|..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~  302 (398)
T 1kol_A          264 FEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  302 (398)
T ss_dssp             TTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             CcccccccccccccchHHHHHHHHHHHhcCCEEEEeccc
Confidence            6421              224667888999999988864

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=96.22  E-value=0.0029  Score=65.82  Aligned_cols=89  Identities=11%  Similarity=0.120  Sum_probs=61.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--CHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--TMEEAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--~Leell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      -.|++|.|+|.|.||..+++.++.+|++|++++ ++.+...+...|...+  +.+++-+..|+++-+.|....  ...++
T Consensus       141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~~~--~~~~~  217 (315)
T 3goh_A          141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQNA--AALVP  217 (315)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC---------TTGG
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCchhH--HHHHH
Confidence            369999999999999999999999999999998 6665444444454321  222222357899888776544  45788


Q ss_pred             cCCCCeEEEEcCCC
Q psy7896         424 QMRDDAIVCNIGHF  437 (718)
Q Consensus       424 ~MK~gAiLIN~GRg  437 (718)
                      .++++..++.+|..
T Consensus       218 ~l~~~G~~v~~g~~  231 (315)
T 3goh_A          218 SLKANGHIICIQDR  231 (315)
T ss_dssp             GEEEEEEEEEECCC
T ss_pred             HhcCCCEEEEEeCC
Confidence            99999999998653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=96.22  E-value=0.014  Score=58.58  Aligned_cols=38  Identities=13%  Similarity=-0.040  Sum_probs=33.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+.+++|.|||.|.+|..+|..+..+| +|+++.+.+.
T Consensus       137 ~~~~~~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          137 YELDQGKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             GGGTTCEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             hhhcCCEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            3467999999999999999999999999 9999876553

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=96.21  E-value=0.0043  Score=66.97  Aligned_cols=92  Identities=25%  Similarity=0.305  Sum_probs=67.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceec-----CH-HHHhc------cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVT-----TM-EEAAK------EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~-----~L-eell~------~aDiIi~atg  412 (718)
                      -.|++|.|+|.|.||..+++.++.+|+ +|+++++++.+...+...|..+.     ++ .+.++      ..|+++-+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g  263 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVG  263 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCC
Confidence            368999999999999999999999999 99999987765444444454332     11 22221      4799998887


Q ss_pred             CCCC-------------cCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDI-------------IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~l-------------I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....             .-.+.++.++++..++.+|..
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          264 FEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             TTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             CccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence            6431             224567889999999988864

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.20  E-value=0.0031  Score=70.03  Aligned_cols=91  Identities=18%  Similarity=0.182  Sum_probs=62.5

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCceec--CH-HHHhccCcEEEEcCCCCCCcC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYEVT--TM-EEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~v~--~L-eell~~aDiIi~atgt~~lI~  418 (718)
                      .+++||+|.|||.|++|.+.++.|...|++|++++.+....++...  .++.+.  .+ ++.+..+|+|+.+|+.. -+|
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at~~~-~~n   86 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD-TVN   86 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH-HHH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcCCCH-HHH
Confidence            4689999999999999999999999999999999876544443322  233321  21 24466899999988764 234


Q ss_pred             HHHHhcCCCCeEEEEcC
Q psy7896         419 GEHFLQMRDDAIVCNIG  435 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~G  435 (718)
                      .......+.-.+.||+.
T Consensus        87 ~~i~~~a~~~~i~vn~~  103 (457)
T 1pjq_A           87 QRVSDAAESRRIFCNVV  103 (457)
T ss_dssp             HHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHcCCEEEEC
Confidence            44444444444556653

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=96.18  E-value=0.0061  Score=65.80  Aligned_cols=84  Identities=17%  Similarity=0.094  Sum_probs=58.5

Q ss_pred             cEEEEEecChhHHHHHHHHHh-CCCEEEEEe---cCCccHHHHh-hc----------C--c--------eecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRL-FGSRVIVTE---IDPINALQAS-ME----------G--Y--------EVTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~-fGa~Viv~d---~dp~~al~a~-~~----------G--~--------~v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..|.. -|.+|++++   +++.....+. ..          +  .        ...+++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~   82 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG   82 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence            589999999999999999977 499999998   5443322211 11          2  1        12367888999


Q ss_pred             CcEEEEcCCCCCCcCHHHH----hcCCCCeEEEEc
Q psy7896         404 GGIFVTTTGCKDIIRGEHF----LQMRDDAIVCNI  434 (718)
Q Consensus       404 aDiIi~atgt~~lI~~e~l----~~MK~gAiLIN~  434 (718)
                      +|+|++++.+...  .+.+    ..++++.+++..
T Consensus        83 aD~Vilav~~~~~--~~v~~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           83 ADVVILTVPAFAH--EGYFQAMAPYVQDSALIVGL  115 (404)
T ss_dssp             CSEEEECSCGGGH--HHHHHHHTTTCCTTCEEEET
T ss_pred             CCEEEEeCchHHH--HHHHHHHHhhCCCCcEEEEc
Confidence            9999998766432  2333    345778888874

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=96.18  E-value=0.0077  Score=64.18  Aligned_cols=98  Identities=20%  Similarity=0.169  Sum_probs=65.0

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC--------------c-eecCHHHHh
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG--------------Y-EVTTMEEAA  401 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G--------------~-~v~~Leell  401 (718)
                      -++|+|||.|.+|+.+|..+...|.+|+++|++|.....+           ...|              . ...++++++
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~   85 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV   85 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence            4689999999999999999999999999999887531100           0111              1 134788999


Q ss_pred             ccCcEEEEcC-CCCCC---cCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         402 KEGGIFVTTT-GCKDI---IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       402 ~~aDiIi~at-gt~~l---I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +.+|+|+-+. ++-.+   +-++.-+.+++++||.....+   +.+..|.+
T Consensus        86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs---l~is~ia~  133 (319)
T 3ado_A           86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC---LLPSKLFT  133 (319)
T ss_dssp             TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS---CCHHHHHT
T ss_pred             ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh---ccchhhhh
Confidence            9999999874 33111   222233457899988644332   45555554

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=96.18  E-value=0.0069  Score=63.51  Aligned_cols=65  Identities=25%  Similarity=0.241  Sum_probs=51.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHH-HhhcCceecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQ-ASMEGYEVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~-a~~~G~~v~~Leell~--~aDiIi~atgt  413 (718)
                      .+|||||+|.||+..++.+... +++++ ++|+++.+... +...|..+.+++++++  +.|+|++++.+
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~   73 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPT   73 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCG
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCc
Confidence            5899999999999999999876 77876 68888765433 2234555778999998  79999998765

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=96.17  E-value=0.0049  Score=64.57  Aligned_cols=90  Identities=21%  Similarity=0.256  Sum_probs=64.6

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e------cCHHHHhc-----cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V------TTMEEAAK-----EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v------~~Leell~-----~aDiIi~atg  412 (718)
                      -.|++|.|.|. |.||+.+++.++.+|++|+++++++.+...+...|.. +      .++.+.+.     ..|+++.+.|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g  223 (333)
T 1v3u_A          144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  223 (333)
T ss_dssp             CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCcEEEecCCHHHHHHHHHHHhCCCCeEEEECCC
Confidence            36899999998 9999999999999999999998876543323223431 1      23333332     3688888877


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...  -...++.|+++..++.+|..
T Consensus       224 ~~~--~~~~~~~l~~~G~~v~~g~~  246 (333)
T 1v3u_A          224 GEF--LNTVLSQMKDFGKIAICGAI  246 (333)
T ss_dssp             HHH--HHHHHTTEEEEEEEEECCCC
T ss_pred             hHH--HHHHHHHHhcCCEEEEEecc
Confidence            532  34567888999999988864

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.16  E-value=0.077  Score=56.77  Aligned_cols=178  Identities=14%  Similarity=0.042  Sum_probs=108.7

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+.|.+.--.. +  . -+.|+.. +-.-.+...++--+++|++.-.+...=.|+.++-|.+.++        .|
T Consensus        84 ~~kgEsl~DTarvls~-~--~-D~iviR~-~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~Ti~e~--------~g  150 (328)
T 3grf_A           84 VGGKETVQDTAEVFSR-M--V-DICTARL-ATKEMMREMAQHASVPCINALDDFGHPLQMVCDFMTIKEK--------FT  150 (328)
T ss_dssp             -----CHHHHHHHHTT-T--C-SEEEEEC-SSHHHHHHHHHHCSSCEEESSCSSCCHHHHHHHHHHHHHH--------HH
T ss_pred             CCCCCCHHHHHHHHHh-h--C-CEEEEec-CChhHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHHH--------hC
Confidence            4667998886653222 2  1 2334432 2223334445666789988766655556777776655320        00


Q ss_pred             ccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc-----HH--HH----hh--cCce
Q psy7896         329 VKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN-----AL--QA----SM--EGYE  393 (718)
Q Consensus       329 v~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~-----al--~a----~~--~G~~  393 (718)
                      .         .......+.|++|++||=+  ++.+..+..+..||++|.++-+....     ..  .+    ..  .|..
T Consensus       151 ~---------~~~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (328)
T 3grf_A          151 A---------AGEFSNGFKGIKFAYCGDSMNNVTYDLMRGCALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGS  221 (328)
T ss_dssp             H---------TTCCTTTGGGCCEEEESCCSSHHHHHHHHHHHHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCE
T ss_pred             C---------ccccccccCCcEEEEeCCCCcchHHHHHHHHHHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCe
Confidence            0         0000125899999999987  78899999999999999998543222     11  01    11  3532


Q ss_pred             ---ecCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896         394 ---VTTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK  448 (718)
Q Consensus       394 ---v~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~  448 (718)
                         ..+++|+++.+|||.+.+    +             ...-++.+.++.+|+++++.-++-  -+.||+.+-+..
T Consensus       222 v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~eV~d~  298 (328)
T 3grf_A          222 IKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTASVIDG  298 (328)
T ss_dssp             EEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHHHHTS
T ss_pred             EEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHHHhCC
Confidence               358999999999998731    2             123489999999999999999975  236787654443

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.15  E-value=0.0084  Score=64.44  Aligned_cols=68  Identities=16%  Similarity=0.191  Sum_probs=48.9

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHhccCcEEEEcC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell~~aDiIi~at  411 (718)
                      ..+.+++|+|+|.|.+|+.+++.++.+|.+|+++|.+|........+.+.+      ..+.++++.+|+|+.-.
T Consensus         8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~~~   81 (377)
T 3orq_A            8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCPCRYVAHEFIQAKYDDEKALNQLGQKCDVITYEF   81 (377)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCTTGGGSSEEEECCTTCHHHHHHHHHHCSEEEESS
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCChhhhhCCEEEECCCCCHHHHHHHHHhCCcceecc
Confidence            346799999999999999999999999999999988765321111121211      12556778899885533

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.15  E-value=0.01  Score=64.00  Aligned_cols=35  Identities=40%  Similarity=0.446  Sum_probs=32.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +++|.|||.|.+|..+|..++.+|.+|++++..+.
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~  186 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPR  186 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCc
Confidence            89999999999999999999999999999987653

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=96.15  E-value=0.092  Score=57.90  Aligned_cols=186  Identities=18%  Similarity=0.201  Sum_probs=112.3

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCC-CChh------HHHHHH---hc-----CC
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGD-VGKG------CAQSLR---LF-----GS  293 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~-vG~~------~A~aLr---a~-----Gv  293 (718)
                      |+-=+++.+.+.+      ..|-+||+.|.+.--.. +   --+.|+.... .|.+      .|.++.   ..     .+
T Consensus        85 LGg~vi~l~~~~s------s~~kGEsl~DTarvLs~-y---~D~IviRh~~~~g~~~~~~~~lA~~~~~~~~~~~~~~~~  154 (418)
T 2yfk_A           85 LGLEVQDLDEGKS------QISHGETVRETANMISF-M---ADIIGIRDDMYIGKGNAYMHEVSESVQEGYKDGVLEQRP  154 (418)
T ss_dssp             HTCEEEEECC--------------CHHHHHHHHTTT-T---EEEEEEEECSSTTHHHHHHHHHHHHHHHHHHTTSCSSCC
T ss_pred             CCCeEEecCCCcc------cCCCCcCHHHHHHHHHH-h---CcEEEEecccccCcchHHHHHHHHHHHhhhcccccCCCC
Confidence            4455666655432      23677999886654222 1   2455665332 1222      222221   22     45


Q ss_pred             eEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcc--cccCcEEEEEe-----cCh---hHHHH
Q psy7896         294 RVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDI--MLAGKVAVVAG-----YGD---VGKGC  363 (718)
Q Consensus       294 ~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~--eL~GktVGIIG-----~G~---IG~~v  363 (718)
                      +|++...+...=.|++++-|.+-+                       ..|.  .|+|++|++||     +|+   +.+..
T Consensus       155 PVINa~~~~~HPtQaLaDl~TI~E-----------------------~~G~l~~l~Glkva~vgd~~~s~Gd~nnVa~Sl  211 (418)
T 2yfk_A          155 TLVNLQCDIDHPTQAMADALHLIH-----------------------EFGGIENLKGKKVAMTWAYSPSYGKPLSVPQGI  211 (418)
T ss_dssp             EEEEEEESSCCHHHHHHHHHHHHH-----------------------HTTSSGGGTTCEEEEECCCCSSSCCCSHHHHHH
T ss_pred             eEEeCCCCccChHHHHHHHHHHHH-----------------------HhCCccccCCCEEEEEeccccccCccchHHHHH
Confidence            688877766666777777665532                       1232  28899999997     454   99999


Q ss_pred             HHHHHhCCCEEEEEecCCc---cHH-H-----HhhcCc--e-ecCHHHHhccCcEEEEcC----------------C---
Q psy7896         364 AQSLRLFGSRVIVTEIDPI---NAL-Q-----ASMEGY--E-VTTMEEAAKEGGIFVTTT----------------G---  412 (718)
Q Consensus       364 A~~l~~fGa~Viv~d~dp~---~al-~-----a~~~G~--~-v~~Leell~~aDiIi~at----------------g---  412 (718)
                      +..+..||++|.++-+...   +.. +     +...|.  . ..+++|+++.+|||.+.+                |   
T Consensus       212 i~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~  291 (418)
T 2yfk_A          212 VGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDADVVYPKSWAPFAAMEKRTELYGNGDQA  291 (418)
T ss_dssp             HHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCSEEEECCCCCHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEEccccchhHHHHHhhhhccccch
Confidence            9999999999999855322   111 1     112352  3 467999999999999842                1   


Q ss_pred             ----------------CCCCcCHHHHhcCCC-CeEEEEcCCC--------CccccHHHHh
Q psy7896         413 ----------------CKDIIRGEHFLQMRD-DAIVCNIGHF--------DCEIQVSWLD  447 (718)
Q Consensus       413 ----------------t~~lI~~e~l~~MK~-gAiLIN~GRg--------d~Eid~~aL~  447 (718)
                                      ....+|.+.++.+|+ ++++.-++-.        ..||+.+-+.
T Consensus       292 ~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcLPa~r~~~~~rg~EIt~eV~d  351 (418)
T 2yfk_A          292 GIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCLPADITGVSCEEGEVEASVFD  351 (418)
T ss_dssp             HHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCSCCCEETTTBSSCSEEHHHHH
T ss_pred             hhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCCCCCCccCCCCCCEEChHHhC
Confidence                            123588999999986 8999888754        3467655443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.13  E-value=0.02  Score=66.44  Aligned_cols=116  Identities=20%  Similarity=0.146  Sum_probs=73.4

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh----hhhhhhhhHH---HHHHHHHHh-ccccccc----
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA----SMEGYELDEE---VAALHLEHL-GVKLTKL----  334 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A----vaeGf~L~r~---i~~~~l~~l-gv~~~~~----  334 (718)
                      ...++|+|||.|+.|+.+|..|+++|+.|+++|..+...-+.    ...++...++   .....+..+ ++.+...    
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~  468 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESPMT  468 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCCCC
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCeec
Confidence            356799999999999999999999999999999865332111    1112211111   111112222 2222100    


Q ss_pred             ------------------chh--------hh--------------hh-hcccccCcEEEEEe--cChhHHHHHHHHHhCC
Q psy7896         335 ------------------TED--------QA--------------KY-LDIMLAGKVAVVAG--YGDVGKGCAQSLRLFG  371 (718)
Q Consensus       335 ------------------~~~--------~~--------------~~-~g~eL~GktVGIIG--~G~IG~~vA~~l~~fG  371 (718)
                                        .+.        ..              .+ .+....|++|.|||  .|.+|..+|..+..+|
T Consensus       469 ~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~e~A~~L~~~g  548 (690)
T 3k30_A          469 GDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGGVVAELLAQKG  548 (690)
T ss_dssp             HHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTTCCCSSSEEEEEECSCSSHHHHHHHHHHHTT
T ss_pred             HHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCCCCCCCCEEEEEcCCCCccHHHHHHHHHhCC
Confidence                              000        00              00 12234689999999  8999999999999999


Q ss_pred             CEEEEEecCCc
Q psy7896         372 SRVIVTEIDPI  382 (718)
Q Consensus       372 a~Viv~d~dp~  382 (718)
                      .+|++++..+.
T Consensus       549 ~~Vtlv~~~~~  559 (690)
T 3k30_A          549 YEVSIVTPGAQ  559 (690)
T ss_dssp             CEEEEEESSSS
T ss_pred             CeeEEEecccc
Confidence            99999887653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=96.12  E-value=0.01  Score=65.02  Aligned_cols=34  Identities=18%  Similarity=0.093  Sum_probs=31.6

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .++|.|||.|.||..+|..++.+|.+|++++..+
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  180 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSD  180 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeeec
Confidence            6799999999999999999999999999988654

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=96.12  E-value=0.011  Score=61.67  Aligned_cols=86  Identities=15%  Similarity=0.079  Sum_probs=59.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee---------------cCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV---------------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v---------------~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|.+|..+|..|..-|.+|+++++++...+  ...|..+               .+.++ ++.+|+|++++..
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~~~~i--~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~   79 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRDYEAI--AGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT   79 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTTHHHH--HHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCcHHHH--HhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC
Confidence            5799999999999999999999999999998763222  2233321               23444 6789999998766


Q ss_pred             CCCcCH-HHH-hcCCCCeEEEEcCCC
Q psy7896         414 KDIIRG-EHF-LQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~-e~l-~~MK~gAiLIN~GRg  437 (718)
                      ..+-.. +.+ ..++++.+++.+.-|
T Consensus        80 ~~~~~~l~~l~~~l~~~~~iv~l~nG  105 (312)
T 3hn2_A           80 FANSRYEELIRPLVEEGTQILTLQNG  105 (312)
T ss_dssp             GGGGGHHHHHGGGCCTTCEEEECCSS
T ss_pred             CCcHHHHHHHHhhcCCCCEEEEecCC
Confidence            543221 122 356788888887665

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.11  E-value=0.01  Score=62.11  Aligned_cols=64  Identities=16%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHHHHh---hc-------Cce--ecCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINALQAS---ME-------GYE--VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al~a~---~~-------G~~--v~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|.+|..+|..+...|  .+|.++|+++.+.....   .+       ...  ..+. +.++.+|+|+++.+.
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~   79 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN   79 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence            58999999999999999998777  68999998875431111   10       122  2455 778999999998765

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=96.10  E-value=0.018  Score=59.93  Aligned_cols=36  Identities=22%  Similarity=0.172  Sum_probs=31.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +.+++|.|||.|.+|..+|..+..+|.+|+++++.+
T Consensus       164 ~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~  199 (369)
T 3d1c_A          164 FNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTT  199 (369)
T ss_dssp             SCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred             cCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCC
Confidence            468999999999999999999999999999987655

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.08  E-value=0.011  Score=62.27  Aligned_cols=88  Identities=17%  Similarity=0.209  Sum_probs=58.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHh---hc------C--ceecCHHHHhccCcEEEEcCCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQAS---ME------G--YEVTTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~---~~------G--~~v~~Leell~~aDiIi~atgt~~  415 (718)
                      ++|+|||.|.+|..+|..+...|.  +|.++|+++.+.....   .+      .  +...+ .+.++.+|+|+++.+...
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~   79 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQ   79 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCC
Confidence            479999999999999999988787  9999998875322111   11      1  12234 456789999999866432


Q ss_pred             C--------------cCHHHHhcC---CCCeEEEEcCCC
Q psy7896         416 I--------------IRGEHFLQM---RDDAIVCNIGHF  437 (718)
Q Consensus       416 l--------------I~~e~l~~M---K~gAiLIN~GRg  437 (718)
                      .              +-.+.+..+   .+++++++++-.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp  118 (319)
T 1a5z_A           80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNP  118 (319)
T ss_dssp             CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCc
Confidence            1              012333333   578888887553

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=96.07  E-value=0.1  Score=56.33  Aligned_cols=171  Identities=12%  Similarity=0.016  Sum_probs=110.0

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhc
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLG  328 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lg  328 (718)
                      .|-+||+.|.+.--.. +  .. +.|+.. +.--.+...++--+++|++.-.+...=.|+.++-|.+-+           
T Consensus        80 l~kgEsl~DTarvLs~-y--~D-~IviR~-~~~~~~~~lA~~~~vPVINag~~~~HPtQaLaDl~TI~E-----------  143 (355)
T 4a8p_A           80 LGGHETIEDTSRVLSR-L--VD-ILMARV-ERHHSIVDLANCATIPVINGMSDYNHPTQELGDLCTMVE-----------  143 (355)
T ss_dssp             BTTTBCHHHHHHHHTT-T--CS-EEEEEC-SSHHHHHHHHHHCSSCEEECCCSSCCHHHHHHHHHHHHH-----------
T ss_pred             CCCCcCHHHHHHHHHH-h--CC-EEEEec-CcHHHHHHHHHhCCCCEEeCCCCCCCcHHHHHHHHHHHH-----------
Confidence            5678999887654322 2  22 334432 222333344566678998875555555666666655422           


Q ss_pred             ccccccchhhhhhh--cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCce---
Q psy7896         329 VKLTKLTEDQAKYL--DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGYE---  393 (718)
Q Consensus       329 v~~~~~~~~~~~~~--g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~~---  393 (718)
                                  ..  |..+.|++|++||= +++....+..+..||++|.++-+....   .. +     +...|..   
T Consensus       144 ------------~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~  211 (355)
T 4a8p_A          144 ------------HLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLV  211 (355)
T ss_dssp             ------------TCCTTCCGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEE
T ss_pred             ------------HhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEE
Confidence                        12  33588999999997 568888899999999999998543221   11 0     1123432   


Q ss_pred             ecCHHHHhccCcEEEEcC----C-------------C-CCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         394 VTTMEEAAKEGGIFVTTT----G-------------C-KDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       394 v~~Leell~~aDiIi~at----g-------------t-~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      ..+++ +++.+|||.+-.    |             . ..-+|.+.++.+|++++|.-++-.  +.||+.+-+..
T Consensus       212 ~~d~~-av~~aDVVytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~eV~d~  285 (355)
T 4a8p_A          212 TDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDEVIDG  285 (355)
T ss_dssp             ECCGG-GGTTCSEEEECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHHHHTS
T ss_pred             ECCHH-HHcCCCEEEecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHHHhCC
Confidence            35788 999999998721    1             1 245899999999999999999852  35787654443

>1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A

Probab=96.07  E-value=0.0044  Score=68.93  Aligned_cols=91  Identities=18%  Similarity=0.244  Sum_probs=60.0

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEE-Ee-------cCCc----c--HHHHh--hc-----------Ccee
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV-TE-------IDPI----N--ALQAS--ME-----------GYEV  394 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv-~d-------~dp~----~--al~a~--~~-----------G~~v  394 (718)
                      .|.+++|++|.|.|+|++|+.+|+.|..+|++|+. .|       .+.+    .  .+...  ..           +.+.
T Consensus       224 ~G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVavsD~~G~i~dp~Gi~d~edi~~l~~~k~~~~g~v~~y~~~~~a~~  303 (449)
T 1bgv_A          224 ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQF  303 (449)
T ss_dssp             TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEE
T ss_pred             ccCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEeCCceEECCCcCCCHHHHHHHHHHHhccCCChhhcccccCCEE
Confidence            37789999999999999999999999999999885 55       2222    1  11110  00           1222


Q ss_pred             cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcCCC-CeEEEE
Q psy7896         395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQMRD-DAIVCN  433 (718)
Q Consensus       395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~MK~-gAiLIN  433 (718)
                      .+-++++ -.+|+++.|. ..+.|+.+....++. |+.+|-
T Consensus       304 i~~~e~~~~~~Dil~P~A-~~~~I~~~na~~l~a~g~kiV~  343 (449)
T 1bgv_A          304 FPGEKPWGQKVDIIMPCA-TQNDVDLEQAKKIVANNVKYYI  343 (449)
T ss_dssp             EETCCGGGSCCSEEECCS-CTTCBCHHHHHHHHHTTCCEEE
T ss_pred             eCchhhhcCCcceeeccc-cccccchhhHHHHHhcCCeEEE
Confidence            2223333 3789998875 456888888887763 554443

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.06  E-value=0.014  Score=57.60  Aligned_cols=41  Identities=17%  Similarity=0.235  Sum_probs=34.2

Q ss_pred             ccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccH
Q psy7896         344 IMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA  384 (718)
Q Consensus       344 ~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~a  384 (718)
                      ..+.||+|.|.|. |.||+.+++.|...|.+|+++++++.+.
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~   58 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG   58 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH
Confidence            5688999999998 9999999999999999999999887654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=96.05  E-value=0.023  Score=58.17  Aligned_cols=36  Identities=31%  Similarity=0.392  Sum_probs=32.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       153 ~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~  188 (319)
T 3cty_A          153 FKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMP  188 (319)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHTTTBSEEEEECSSS
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCC
Confidence            468999999999999999999999999999987655

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.04  E-value=0.013  Score=64.13  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=32.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .++++.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  180 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLE  180 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccC
Confidence            57999999999999999999999999999998765

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=96.04  E-value=0.17  Score=55.50  Aligned_cols=161  Identities=19%  Similarity=0.146  Sum_probs=99.5

Q ss_pred             ccchhhHHHHHhhhcccccCCcEEEEEecC---CCChhHHHHHHh-------cC-----CeEEEeecCchhhhhhhhhhh
Q psy7896         249 YGCRESLVDGLKRATDIMLAGKVAVVAGYG---DVGKGCAQSLRL-------FG-----SRVIVTEIDPINALQASMEGY  313 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~~~~Gk~vvViGyG---~vG~~~A~aLra-------~G-----v~VtV~D~dp~r~v~AvaeGf  313 (718)
                      .|-+||+-|...-    +..---+.|+...   ..+-..+..+.+       -|     ++|++...+...=.|++++-|
T Consensus       102 l~kGEsl~DTarv----Ls~y~D~IviRh~~~~g~~~~~~~~la~~~~~~~~~~v~~~~~PVINal~d~~HPtQaLaDl~  177 (399)
T 3q98_A          102 IAHGETVRETANM----ISFCADAIGIRDDMYLGAGNAYMREVGAALDDGYKQGVLPQRPALVNLQCDIDHPTQSMADLA  177 (399)
T ss_dssp             --CCTTHHHHHHH----TCTTEEEEEEEECCCCCC---HHHHHHHHHHHHHHTTSCSSCCEEEEEECSSCCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHH----HHhhCcEEEEeccccCCcchHHHHHHHHHhhhhcccccccCCCcEEeCCCCCcCcHHHHHHHH
Confidence            4668999887643    2223445666632   122222222222       23     478887776666677777766


Q ss_pred             hhhHHHHHHHHHHhcccccccchhhhhhhcc--cccCcEEEEEec-----C---hhHHHHHHHHHhCCCEEEEEecCCc-
Q psy7896         314 ELDEEVAALHLEHLGVKLTKLTEDQAKYLDI--MLAGKVAVVAGY-----G---DVGKGCAQSLRLFGSRVIVTEIDPI-  382 (718)
Q Consensus       314 ~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~--eL~GktVGIIG~-----G---~IG~~vA~~l~~fGa~Viv~d~dp~-  382 (718)
                      .+-+                       ..|.  .|+|++|+++|-     |   ++....+..+..||++|.++-+... 
T Consensus       178 TI~E-----------------------~~G~~~~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~  234 (399)
T 3q98_A          178 WLRE-----------------------HFGSLENLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYD  234 (399)
T ss_dssp             HHHH-----------------------HHSSSGGGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCC
T ss_pred             HHHH-----------------------HhCCccccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccC
Confidence            5432                       1222  478999999983     4   6888999999999999999854321 


Q ss_pred             --cHH-H-----HhhcCce---ecCHHHHhccCcEEEEcC----C-------------------------------CCCC
Q psy7896         383 --NAL-Q-----ASMEGYE---VTTMEEAAKEGGIFVTTT----G-------------------------------CKDI  416 (718)
Q Consensus       383 --~al-~-----a~~~G~~---v~~Leell~~aDiIi~at----g-------------------------------t~~l  416 (718)
                        ... +     +...|..   ..+++|+++.+|||.+.+    |                               ....
T Consensus       235 ~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~aDvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yq  314 (399)
T 3q98_A          235 LIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWH  314 (399)
T ss_dssp             CCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEecCccccchhhhhhhhccccchhhhhhhhhhhhHHHHHccCcE
Confidence              111 1     1123532   368999999999998842    1                               1245


Q ss_pred             cCHHHHhcCCC-CeEEEEcCC
Q psy7896         417 IRGEHFLQMRD-DAIVCNIGH  436 (718)
Q Consensus       417 I~~e~l~~MK~-gAiLIN~GR  436 (718)
                      ||.+.++..++ ++++.-|.-
T Consensus       315 Vn~elm~~a~~~daifMHcLP  335 (399)
T 3q98_A          315 CTEEMMELTRDGEALYMHCLP  335 (399)
T ss_dssp             BCHHHHHTSGGGCCEECCCSS
T ss_pred             ECHHHHhhcCCCCcEEECCCC
Confidence            88888888874 888877753

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=96.03  E-value=0.0061  Score=64.69  Aligned_cols=90  Identities=17%  Similarity=0.216  Sum_probs=67.0

Q ss_pred             ccCcEEEEE-ecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHhc-----cCcEEEEcCCC
Q psy7896         346 LAGKVAVVA-GYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAAK-----EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGII-G~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell~-----~aDiIi~atgt  413 (718)
                      -.|++|.|+ |.|.||..+++.++.+|++|+++++++.+...+...|...      .++.+.++     ..|+++.+.|.
T Consensus       166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~  245 (353)
T 4dup_A          166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGA  245 (353)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCG
T ss_pred             CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCH
Confidence            368999999 6799999999999999999999998776543333334321      12333332     47999998886


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .  .-...+..|+++..++++|..
T Consensus       246 ~--~~~~~~~~l~~~G~iv~~g~~  267 (353)
T 4dup_A          246 A--YFERNIASLAKDGCLSIIAFL  267 (353)
T ss_dssp             G--GHHHHHHTEEEEEEEEECCCT
T ss_pred             H--HHHHHHHHhccCCEEEEEEec
Confidence            4  234678899999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=96.03  E-value=0.018  Score=65.09  Aligned_cols=38  Identities=29%  Similarity=0.269  Sum_probs=34.9

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+.||+|+|||.|.+|..+|..+...|.+|+++.+.|.
T Consensus       175 ~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          175 SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            46799999999999999999999999999999987764

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=96.03  E-value=0.0053  Score=64.39  Aligned_cols=90  Identities=21%  Similarity=0.253  Sum_probs=66.1

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCcee------cCHHHHhc-----cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEV------TTMEEAAK-----EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v------~~Leell~-----~aDiIi~atg  412 (718)
                      -.|++|.|+|. |.||..+++.++.+|++|+++++++.+...+ ...|...      .++.+.+.     ..|+++.+.|
T Consensus       148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~g  227 (336)
T 4b7c_A          148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKGIDVFFDNVG  227 (336)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCSEEEETTTSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCCEEEECCCHHHHHHHHHhcCCCceEEEECCC
Confidence            46899999999 9999999999999999999998877654333 3344321      12333322     3789988877


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..  .-...++.|+++..++.+|..
T Consensus       228 ~~--~~~~~~~~l~~~G~iv~~G~~  250 (336)
T 4b7c_A          228 GE--ILDTVLTRIAFKARIVLCGAI  250 (336)
T ss_dssp             HH--HHHHHHTTEEEEEEEEECCCG
T ss_pred             cc--hHHHHHHHHhhCCEEEEEeec
Confidence            52  234567889999999998864

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=96.01  E-value=0.0061  Score=71.62  Aligned_cols=87  Identities=18%  Similarity=0.163  Sum_probs=60.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------ce-ecCHHHHhcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YE-VTTMEEAAKE  403 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~-v~~Leell~~  403 (718)
                      ++|+|||.|.+|..+|..+...|.+|+++|+++.....+           ...|             .. ..++ +.+++
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~  391 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD  391 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence            689999999999999999999999999999987543211           0122             11 2345 57889


Q ss_pred             CcEEEEcCCCCC----CcCHHHHhcCCCCeEEE-EcCC
Q psy7896         404 GGIFVTTTGCKD----IIRGEHFLQMRDDAIVC-NIGH  436 (718)
Q Consensus       404 aDiIi~atgt~~----lI~~e~l~~MK~gAiLI-N~GR  436 (718)
                      ||+|+.+....-    .+-.+..+.++++++++ |++.
T Consensus       392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt  429 (725)
T 2wtb_A          392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST  429 (725)
T ss_dssp             CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS
T ss_pred             CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC
Confidence            999999855431    12223345689999885 5554

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.01  E-value=0.011  Score=66.23  Aligned_cols=36  Identities=25%  Similarity=0.288  Sum_probs=32.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  185 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQ  185 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCc
Confidence            478999999999999999999999999999987653

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=96.00  E-value=0.021  Score=57.71  Aligned_cols=38  Identities=21%  Similarity=0.133  Sum_probs=34.0

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ...+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       144 ~~~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~  181 (315)
T 3r9u_A          144 FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRRDE  181 (315)
T ss_dssp             GGTTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             ccCcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence            35789999999999999999999999999999876653

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=95.97  E-value=0.017  Score=61.77  Aligned_cols=91  Identities=18%  Similarity=0.176  Sum_probs=63.7

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHh---ccCcEEEEcCCCCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAA---KEGGIFVTTTGCKD  415 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell---~~aDiIi~atgt~~  415 (718)
                      -.|++|.|+| .|.||..+++.++.+|++|++++ ++.+...+...|...      .++.+.+   ...|+++.++|...
T Consensus       182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~  260 (375)
T 2vn8_A          182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGST  260 (375)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChh
Confidence            3689999999 79999999999999999999887 444432333345421      1233333   24799998887642


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..-...+..++++..++.+|..
T Consensus       261 ~~~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          261 ETWAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             HHHGGGGBCSSSCCEEEESCCS
T ss_pred             hhhHHHHHhhcCCcEEEEeCCC
Confidence            2113567788999999998864

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.97  E-value=0.0099  Score=64.21  Aligned_cols=36  Identities=22%  Similarity=0.284  Sum_probs=33.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       142 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~~~  177 (410)
T 3ef6_A          142 SATRLLIVGGGLIGCEVATTARKLGLSVTILEAGDE  177 (410)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCc
Confidence            389999999999999999999999999999987764

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.97  E-value=0.0058  Score=65.18  Aligned_cols=90  Identities=16%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHhc-----cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAAK-----EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell~-----~aDiIi~atgt  413 (718)
                      -.|++|.|+| .|.||..+++.++.+|++|+++++++.+...+...|...      .++.+.++     ..|+++.+++.
T Consensus       162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g~  241 (362)
T 2c0c_A          162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGCDRPINYKTEPVGTVLKQEYPEGVDVVYESVGG  241 (362)
T ss_dssp             CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHCTTCEEEEEECSCT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCCcEEEecCChhHHHHHHHhcCCCCCEEEECCCH
Confidence            3689999999 799999999999999999999988765433333344321      13333332     36898888775


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .  .-...++.|+++..++.+|..
T Consensus       242 ~--~~~~~~~~l~~~G~iv~~g~~  263 (362)
T 2c0c_A          242 A--MFDLAVDALATKGRLIVIGFI  263 (362)
T ss_dssp             H--HHHHHHHHEEEEEEEEECCCG
T ss_pred             H--HHHHHHHHHhcCCEEEEEeCC
Confidence            2  234567888999999988764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=95.96  E-value=0.019  Score=63.48  Aligned_cols=35  Identities=23%  Similarity=0.281  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  231 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD  231 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc
Confidence            57999999999999999999999999999997655

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.96  E-value=0.0027  Score=66.29  Aligned_cols=40  Identities=23%  Similarity=0.211  Sum_probs=36.0

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ...++||+|.|||.|++|...++.|...|++|++++.++.
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            3578999999999999999999999999999999986543

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=95.96  E-value=0.0081  Score=61.34  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=34.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|++++|.|||.|.+|..+|+.|...|. +++++|.|.
T Consensus        28 ~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~   65 (249)
T 1jw9_B           28 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT   65 (249)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred             HHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence            4788999999999999999999999998 899999887

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=95.96  E-value=0.019  Score=65.03  Aligned_cols=39  Identities=21%  Similarity=0.186  Sum_probs=35.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++.||+|+|||.|.+|..+|..+...|.+|+++.+.|.
T Consensus       181 ~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          181 VDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             cccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            446799999999999999999999999999999987764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.95  E-value=0.006  Score=64.23  Aligned_cols=90  Identities=18%  Similarity=0.196  Sum_probs=66.1

Q ss_pred             ccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHh------ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAA------KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell------~~aDiIi~atg  412 (718)
                      -.|++|.|+|.| .||..+++.++.+|++|+++++++.+...+...|...      .++.+.+      +..|+++.++|
T Consensus       143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  222 (340)
T 3gms_A          143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAAYVIDTSTAPLYETVMELTNGIGADAAIDSIG  222 (340)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCcEEEeCCcccHHHHHHHHhCCCCCcEEEECCC
Confidence            368999999998 8999999999999999999998776543333344321      1233322      14799998887


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....  .+.+..++++..++.+|..
T Consensus       223 ~~~~--~~~~~~l~~~G~iv~~G~~  245 (340)
T 3gms_A          223 GPDG--NELAFSLRPNGHFLTIGLL  245 (340)
T ss_dssp             HHHH--HHHHHTEEEEEEEEECCCT
T ss_pred             ChhH--HHHHHHhcCCCEEEEEeec
Confidence            6433  3456789999999999864

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.94  E-value=0.031  Score=62.20  Aligned_cols=107  Identities=12%  Similarity=0.158  Sum_probs=83.5

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC---EEEEEecCCc----c-HH---------H--Hhh-cCceecCHHHHh
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDPI----N-AL---------Q--ASM-EGYEVTTMEEAA  401 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa---~Viv~d~dp~----~-al---------~--a~~-~G~~v~~Leell  401 (718)
                      .|..|...+|.|.|.|.-|..+|+.+...|+   ++.++|+.-.    + .+         .  +.. ..-...+|.|++
T Consensus       213 ~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav  292 (487)
T 3nv9_A          213 VKKDIHECRMVFIGAGSSNTTCLRLIVTAGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEAC  292 (487)
T ss_dssp             HTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHH
T ss_pred             hCCChhhcEEEEECCCHHHHHHHHHHHHcCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHH
Confidence            4678899999999999999999999999999   7999886421    1 11         0  111 111345899999


Q ss_pred             ccCcEEEEcCCC-CCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         402 KEGGIFVTTTGC-KDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       402 ~~aDiIi~atgt-~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +.+|+++-++.. .++++++.++.|.+..|+.-.+.-..|+..+....
T Consensus       293 ~~adVlIG~S~~~pg~ft~e~V~~Ma~~PIIFaLSNPtpEi~pe~A~~  340 (487)
T 3nv9_A          293 VGADVLISLSTPGPGVVKAEWIKSMGEKPIVFCCANPVPEIYPYEAKE  340 (487)
T ss_dssp             TTCSEEEECCCSSCCCCCHHHHHTSCSSCEEEECCSSSCSSCHHHHHH
T ss_pred             hcCCEEEEecccCCCCCCHHHHHhhcCCCEEEECCCCCccCCHHHHHH
Confidence            999999987632 78999999999999999999888766888764443

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.90  E-value=0.0066  Score=63.53  Aligned_cols=90  Identities=18%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh------ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA------KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell------~~aDiIi~atg  412 (718)
                      -.|++|.|+| .|.||..+++.++.+|++|+++++++.+...+...|.. +     .++.+.+      +..|+++.+.|
T Consensus       139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g  218 (325)
T 3jyn_A          139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGAWETIDYSHEDVAKRVLELTDGKKCPVVYDGVG  218 (325)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEESSC
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCccHHHHHHHHhCCCCceEEEECCC
Confidence            3689999999 79999999999999999999998877654333333432 1     1232222      24799998887


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .. . -...++.|+++..++.+|..
T Consensus       219 ~~-~-~~~~~~~l~~~G~iv~~g~~  241 (325)
T 3jyn_A          219 QD-T-WLTSLDSVAPRGLVVSFGNA  241 (325)
T ss_dssp             GG-G-HHHHHTTEEEEEEEEECCCT
T ss_pred             hH-H-HHHHHHHhcCCCEEEEEecC
Confidence            62 2 34678899999999999864

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=95.90  E-value=0.032  Score=56.50  Aligned_cols=39  Identities=21%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ....+++|.|||.|.+|..+|..+...|.+|+++++.+.
T Consensus       150 ~~~~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~~  188 (323)
T 3f8d_A          150 PLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRDT  188 (323)
T ss_dssp             GGGTTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSSS
T ss_pred             hHcCCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCCC
Confidence            345789999999999999999999999999999987653

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.90  E-value=0.005  Score=64.92  Aligned_cols=90  Identities=17%  Similarity=0.255  Sum_probs=64.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee-----cCHHHHhc-----cCcEEEEcCCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV-----TTMEEAAK-----EGGIFVTTTGCKD  415 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v-----~~Leell~-----~aDiIi~atgt~~  415 (718)
                      .|++|.|+|.|.||..+++.++.+|+ +|+++++++.+...+......+     .++.+.++     ..|+++.+++...
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~la~~v~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~  243 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPYADRLVNPLEEDLLEVVRRVTGSGVEVLLEFSGNEA  243 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTTCSEEECTTTSCHHHHHHHHHSSCEEEEEECSCCHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhHHhccCcCccCHHHHHHHhcCCCCCEEEECCCCHH
Confidence            79999999999999999999999999 9999987765422221111111     13333332     4799998887633


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+ ...++.|+++..++.+|..
T Consensus       244 ~~-~~~~~~l~~~G~iv~~g~~  264 (343)
T 2dq4_A          244 AI-HQGLMALIPGGEARILGIP  264 (343)
T ss_dssp             HH-HHHHHHEEEEEEEEECCCC
T ss_pred             HH-HHHHHHHhcCCEEEEEecC
Confidence            32 3568889999999999864

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=95.89  E-value=0.0053  Score=64.50  Aligned_cols=90  Identities=18%  Similarity=0.225  Sum_probs=63.9

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCce-ec------CHHHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYE-VT------TMEEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~-v~------~Leell~-----~aDiIi~at  411 (718)
                      -.|++|.|+|. |.||+.+++.++.+|++|+++++++.+...+. ..|.. +.      ++.+.++     ..|+++.+.
T Consensus       154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~  233 (345)
T 2j3h_A          154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTKFGFDDAFNYKEESDLTAALKRCFPNGIDIYFENV  233 (345)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTSCCSEEEETTSCSCSHHHHHHHCTTCEEEEEESS
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCCceEEecCCHHHHHHHHHHHhCCCCcEEEECC
Confidence            36899999997 99999999999999999999988765433332 23432 11      2333332     468888887


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +..  .-...++.|+++..++.+|..
T Consensus       234 g~~--~~~~~~~~l~~~G~~v~~G~~  257 (345)
T 2j3h_A          234 GGK--MLDAVLVNMNMHGRIAVCGMI  257 (345)
T ss_dssp             CHH--HHHHHHTTEEEEEEEEECCCG
T ss_pred             CHH--HHHHHHHHHhcCCEEEEEccc
Confidence            752  234567888899988888753

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.89  E-value=0.0077  Score=63.15  Aligned_cols=90  Identities=16%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHh------ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAA------KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell------~~aDiIi~atg  412 (718)
                      -.|++|.|+| .|.||..+++.++.+|++|+++++++.+...+...|...      .++.+.+      +..|+++.+.|
T Consensus       147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~g~D~vid~~g  226 (334)
T 3qwb_A          147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGAEYLINASKEDILRQVLKFTNGKGVDASFDSVG  226 (334)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTTSCHHHHHHHHTTTSCEEEEEECCG
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEeCCCchHHHHHHHHhCCCCceEEEECCC
Confidence            4689999999 899999999999999999999988776543343445431      1222222      14799988887


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..  .-...++.|+++..++.+|..
T Consensus       227 ~~--~~~~~~~~l~~~G~iv~~G~~  249 (334)
T 3qwb_A          227 KD--TFEISLAALKRKGVFVSFGNA  249 (334)
T ss_dssp             GG--GHHHHHHHEEEEEEEEECCCT
T ss_pred             hH--HHHHHHHHhccCCEEEEEcCC
Confidence            62  234568899999999999864

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.88  E-value=0.0044  Score=65.40  Aligned_cols=90  Identities=16%  Similarity=0.146  Sum_probs=66.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhC--CCEEEEEecCCccHHHHhhcCce-ecCHHH------Hhc---cCcEEEEcCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPINALQASMEGYE-VTTMEE------AAK---EGGIFVTTTGCK  414 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp~~al~a~~~G~~-v~~Lee------ll~---~aDiIi~atgt~  414 (718)
                      .|++|.|+|.|.||..+++.++.+  |++|++++.++.+...+...|.. +.+..+      .+.   ..|+++.+++..
T Consensus       170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~  249 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE  249 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence            799999999999999999999999  99999998776554333334542 233211      122   479999988864


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..+ ...++.|+++..++.+|..
T Consensus       250 ~~~-~~~~~~l~~~G~iv~~g~~  271 (344)
T 2h6e_A          250 ETT-YNLGKLLAQEGAIILVGME  271 (344)
T ss_dssp             HHH-HHHHHHEEEEEEEEECCCC
T ss_pred             HHH-HHHHHHhhcCCEEEEeCCC
Confidence            233 3567889999999999864

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=95.88  E-value=0.094  Score=56.72  Aligned_cols=176  Identities=15%  Similarity=0.050  Sum_probs=112.3

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+--+++.+.+.+      ..|-+||+.|.+.--.. +.  . ++|+. .+---.+...++--+++|++-+.+...-.|+
T Consensus        95 LGg~vi~l~~~~s------s~~kgEsl~DTarvLs~-~~--D-~IviR-~~~~~~~~~la~~s~vPVING~g~~~HPtQa  163 (358)
T 4h31_A           95 QGAQVTYIGPSGS------QIGDKESMKDTARVLGR-MY--D-GIQYR-GFGQAIVEELGAFAGVPVWNGLTDEFHPTQI  163 (358)
T ss_dssp             TTCEEEEECSSSS------CBTTTBCHHHHHHHHHH-HC--S-EEEEE-CSCHHHHHHHHHHSSSCEEESCCSSCCHHHH
T ss_pred             cCCeEEECCcccc------cccCccchhHHHHHhhc-cC--c-eeEec-ccchhHHHHhhhhccCceECCCCcCCCchHH
Confidence            4445555554322      23567898876653222 21  2 33343 3333334445566678999877776666777


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---  383 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---  383 (718)
                      +++-|.+-+                      .+.+..+.|++|++||=+  ++....+..+..||++|.++-+....   
T Consensus       164 L~Dl~Ti~e----------------------~~~~~~l~gl~ia~vGD~~~~va~S~~~~~~~~g~~v~~~~P~~~~p~~  221 (358)
T 4h31_A          164 LADFLTMLE----------------------HSQGKALADIQFAYLGDARNNVGNSLMVGAAKMGMDIRLVGPQAYWPDE  221 (358)
T ss_dssp             HHHHHHHHH----------------------TTTTCCGGGCEEEEESCTTSHHHHHHHHHHHHHTCEEEEESCGGGSCCH
T ss_pred             HHHHHHHHH----------------------HhcCCCcCceEEEecCCCCcccchHHHHHHHhcCceEEEeCCcccCCCH
Confidence            777665421                      122457899999999965  79999999999999999998542221   


Q ss_pred             HH------HHhhcCce---ecCHHHHhccCcEEEEcC----C-------------CCCCcCHHHHhcC-CCCeEEEEcCC
Q psy7896         384 AL------QASMEGYE---VTTMEEAAKEGGIFVTTT----G-------------CKDIIRGEHFLQM-RDDAIVCNIGH  436 (718)
Q Consensus       384 al------~a~~~G~~---v~~Leell~~aDiIi~at----g-------------t~~lI~~e~l~~M-K~gAiLIN~GR  436 (718)
                      ..      .+...|..   ..+++|+++.+|||.+..    +             ...-++.+.++++ |+++++.-++-
T Consensus       222 ~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~LP  301 (358)
T 4h31_A          222 ELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCLP  301 (358)
T ss_dssp             HHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECSC
T ss_pred             HHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCCC
Confidence            11      01123433   358999999999998731    1             1124888888764 88999998875


Q ss_pred             C
Q psy7896         437 F  437 (718)
Q Consensus       437 g  437 (718)
                      .
T Consensus       302 ~  302 (358)
T 4h31_A          302 A  302 (358)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=95.85  E-value=0.034  Score=60.90  Aligned_cols=36  Identities=31%  Similarity=0.377  Sum_probs=32.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++++.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  208 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPR  208 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCc
Confidence            468999999999999999999999999999987653

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.85  E-value=0.0077  Score=64.63  Aligned_cols=91  Identities=23%  Similarity=0.202  Sum_probs=66.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhhcCce-ecC--------HHHHh----c--cCcEEEEc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASMEGYE-VTT--------MEEAA----K--EGGIFVTT  410 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~~G~~-v~~--------Leell----~--~aDiIi~a  410 (718)
                      .|++|.|+|.|.||..+++.++.+| ++|+++++++.+...+...|.. +.+        +.+.+    .  ..|+++.+
T Consensus       195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~v~~~~~g~g~Dvvid~  274 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFILEA  274 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCcEEEeccccCcchHHHHHHHHhCCCCCcEEEEC
Confidence            5899999999999999999999999 5999999877654334444543 111        11222    1  47999988


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ++....+ ...++.|+++..++.+|...
T Consensus       275 ~g~~~~~-~~~~~~l~~~G~iv~~G~~~  301 (380)
T 1vj0_A          275 TGDSRAL-LEGSELLRRGGFYSVAGVAV  301 (380)
T ss_dssp             SSCTTHH-HHHHHHEEEEEEEEECCCCS
T ss_pred             CCCHHHH-HHHHHHHhcCCEEEEEecCC
Confidence            8764333 35688899999999998643

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=95.84  E-value=0.027  Score=59.12  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             cEEEEEecChhHHHHHHHHHh--CCCEEEEEecCCccHHHH---hhcC---------cee-cCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRL--FGSRVIVTEIDPINALQA---SMEG---------YEV-TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~--fGa~Viv~d~dp~~al~a---~~~G---------~~v-~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|.+|..+|..+..  +|.+|+++|+++.+....   ..++         +.. .+.++ ++.+|+|+.+.++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~   79 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGL   79 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCC
Confidence            479999999999999999876  688999999988543211   1111         122 45666 8999999998654

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=95.84  E-value=0.011  Score=62.33  Aligned_cols=89  Identities=20%  Similarity=0.173  Sum_probs=64.3

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHHHh------ccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEEAA------KEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Leell------~~aDiIi~atgt  413 (718)
                      .|++|.|+|. |.||+.+++.++.+|++|+++++++.+...+...|.. +.     ++.+.+      +..|+++.+++.
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~d~vi~~~g~  245 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGADETVNYTHPDWPKEVRRLTGGKGADKVVDHTGA  245 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTSTTHHHHHHHHTTTTCEEEEEESSCS
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEcCCcccHHHHHHHHhCCCCceEEEECCCH
Confidence            6899999999 9999999999999999999998876543333223432 11     222222      247899888873


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                       . .-...++.|+++..++.+|..
T Consensus       246 -~-~~~~~~~~l~~~G~~v~~g~~  267 (343)
T 2eih_A          246 -L-YFEGVIKATANGGRIAIAGAS  267 (343)
T ss_dssp             -S-SHHHHHHHEEEEEEEEESSCC
T ss_pred             -H-HHHHHHHhhccCCEEEEEecC
Confidence             2 334678889999999998864

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=95.83  E-value=0.012  Score=62.11  Aligned_cols=88  Identities=20%  Similarity=0.094  Sum_probs=65.1

Q ss_pred             CcEEEEE-ecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh------ccCcEEEEcCCCC
Q psy7896         348 GKVAVVA-GYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA------KEGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGII-G~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell------~~aDiIi~atgt~  414 (718)
                      +++|.|. |.|.||..+++.++.+|++|++++.++.+...+...|.. +     .++.+.+      +..|+++.+.|..
T Consensus       165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~  244 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGP  244 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCCh
Confidence            3677666 899999999999999999999999877654434334542 1     1233322      2589999988865


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .+  ...++.|+++..++++|..
T Consensus       245 ~~--~~~~~~l~~~G~iv~~G~~  265 (349)
T 3pi7_A          245 LA--SAIFNAMPKRARWIIYGRL  265 (349)
T ss_dssp             HH--HHHHHHSCTTCEEEECCCS
T ss_pred             hH--HHHHhhhcCCCEEEEEecc
Confidence            33  5678999999999999853

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=95.82  E-value=0.029  Score=57.83  Aligned_cols=41  Identities=29%  Similarity=0.221  Sum_probs=36.5

Q ss_pred             cccccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         343 DIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       343 g~eL~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      +..+.||++.|+| .|.||+++++.|...|++|+++++++.+
T Consensus       114 ~~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~  155 (287)
T 1lu9_A          114 GGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDK  155 (287)
T ss_dssp             TSCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             ccCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHH
Confidence            3467899999999 9999999999999999999999887654

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=95.82  E-value=0.035  Score=59.14  Aligned_cols=34  Identities=21%  Similarity=0.157  Sum_probs=32.2

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ++++.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  178 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE  178 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc
Confidence            8999999999999999999999999999998765

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=95.80  E-value=0.024  Score=59.00  Aligned_cols=91  Identities=18%  Similarity=0.210  Sum_probs=59.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHH-HH--hhcCc------ee--cCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINAL-QA--SMEGY------EV--TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al-~a--~~~G~------~v--~~Leell~~aDiIi~atgt  413 (718)
                      ..++|+|||.|.+|..+|..+...|.  +|+++|+++.+.. .+  ..++.      .+  .+-.+.++.+|+|+++++.
T Consensus         6 ~~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~aD~Vii~v~~   85 (319)
T 1lld_A            6 KPTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP   85 (319)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCCHHHhCCCCEEEECCCC
Confidence            34689999999999999999988888  9999998864321 11  11221      11  1123567899999998764


Q ss_pred             CCCc--C---------------HHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDII--R---------------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI--~---------------~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...-  +               .+.+....++++++++.-+
T Consensus        86 ~~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np  126 (319)
T 1lld_A           86 RQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP  126 (319)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCc
Confidence            3221  0               1223333678889887664

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=95.79  E-value=0.0067  Score=64.39  Aligned_cols=88  Identities=13%  Similarity=0.009  Sum_probs=65.0

Q ss_pred             CcEEEEEecChhHHHH-HHHH-HhCCCE-EEEEecCCc---cHHHHhhcCceec-----CHHHHhc----cCcEEEEcCC
Q psy7896         348 GKVAVVAGYGDVGKGC-AQSL-RLFGSR-VIVTEIDPI---NALQASMEGYEVT-----TMEEAAK----EGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG~G~IG~~v-A~~l-~~fGa~-Viv~d~dp~---~al~a~~~G~~v~-----~Leell~----~aDiIi~atg  412 (718)
                      +++|.|+|.|.||..+ ++.+ +.+|++ |++++.++.   +...+...|...+     ++.+ ++    ..|+++-++|
T Consensus       173 ~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~-i~~~~gg~Dvvid~~g  251 (357)
T 2b5w_A          173 PSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDATYVDSRQTPVED-VPDVYEQMDFIYEATG  251 (357)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCEEEETTTSCGGG-HHHHSCCEEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCcccCCCccCHHH-HHHhCCCCCEEEECCC
Confidence            3999999999999999 9999 999997 999998776   5433444554322     2222 22    3699998887


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....+ ...++.++++..++.+|..
T Consensus       252 ~~~~~-~~~~~~l~~~G~iv~~g~~  275 (357)
T 2b5w_A          252 FPKHA-IQSVQALAPNGVGALLGVP  275 (357)
T ss_dssp             CHHHH-HHHHHHEEEEEEEEECCCC
T ss_pred             ChHHH-HHHHHHHhcCCEEEEEeCC
Confidence            64222 3567889999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=95.79  E-value=0.014  Score=66.06  Aligned_cols=35  Identities=29%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  220 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN  220 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC
Confidence            58999999999999999999999999999998655

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=95.78  E-value=0.12  Score=55.48  Aligned_cols=185  Identities=12%  Similarity=0.008  Sum_probs=114.6

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      |+-=++..+.+.      ...|-+||+-|...--.. +  .. +.|+. .+---.+...++--+++|++.-.+...=.|+
T Consensus        88 LGg~~i~l~~~~------ssl~kgEsl~DTarvLs~-~--~D-~IviR-~~~~~~~~~lA~~~~vPVINag~~~~HPtQa  156 (339)
T 4a8t_A           88 LGGHGEYLAPGQ------IQLGGHETIEDTSRVLSR-L--VD-ILMAR-VERHHSIVDLANCATIPVINGMSDYNHPTQE  156 (339)
T ss_dssp             TTCEEEEECCC-------CCSSSSSCHHHHHHHHHH-H--CS-EEEEE-CSSHHHHHHHHHHCSSCEEECCCSSCCHHHH
T ss_pred             cCCeEEEeCccc------ccCCCCcCHHHHHHHHHH-h--CC-EEEEe-cCcHHHHHHHHHhCCCCEEECCCCCcCcHHH
Confidence            444455554432      234667898876553211 2  22 33333 2222333444566678998875555555666


Q ss_pred             hhhhhhhhHHHHHHHHHHhcccccccchhhhhhh--cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc--
Q psy7896         309 SMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYL--DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN--  383 (718)
Q Consensus       309 vaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~--g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~--  383 (718)
                      +++-|.+-+                       ..  |..+.|++|++||= +++....+..+..||++|.++-+....  
T Consensus       157 LaDl~Ti~e-----------------------~~~~G~~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~  213 (339)
T 4a8t_A          157 LGDLCTMVE-----------------------HLPEGKKLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLN  213 (339)
T ss_dssp             HHHHHHHHH-----------------------TCCTTCCGGGCEEEEESSCCHHHHHHHHHHHHTTCEEEEECCTTSSCC
T ss_pred             HHHHHHHHH-----------------------HhhcCCCCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCC
Confidence            666555422                       12  33589999999997 468888899999999999998543221  


Q ss_pred             -HH-H-----HhhcCce---ecCHHHHhccCcEEEEcC----C----C----------CCCcCHHHHhcCCCCeEEEEcC
Q psy7896         384 -AL-Q-----ASMEGYE---VTTMEEAAKEGGIFVTTT----G----C----------KDIIRGEHFLQMRDDAIVCNIG  435 (718)
Q Consensus       384 -al-~-----a~~~G~~---v~~Leell~~aDiIi~at----g----t----------~~lI~~e~l~~MK~gAiLIN~G  435 (718)
                       .. +     +...|..   ..+++ +++.+|||.+-.    |    .          ..-++.+.++.+|+++++.-++
T Consensus       214 ~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcL  292 (339)
T 4a8t_A          214 EEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL  292 (339)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred             HHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence             11 0     1123432   35788 999999999721    1    0          1458889999999999999997


Q ss_pred             CC--CccccHHHHhc
Q psy7896         436 HF--DCEIQVSWLDK  448 (718)
Q Consensus       436 Rg--d~Eid~~aL~~  448 (718)
                      -.  ..||+.+-+..
T Consensus       293 Pa~Rg~EIt~eV~d~  307 (339)
T 4a8t_A          293 PATRGEEVTDEVIDG  307 (339)
T ss_dssp             CCCBTTTBCHHHHTS
T ss_pred             CCCCCCeeCHHHhCC
Confidence            52  35787655443

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=95.78  E-value=0.044  Score=60.43  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .++++.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~  224 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD  224 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC
Confidence            47999999999999999999999999999998765

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.78  E-value=0.01  Score=62.93  Aligned_cols=92  Identities=17%  Similarity=0.153  Sum_probs=65.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcC---cee-------cCHHHHh------ccCcEEE
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEG---YEV-------TTMEEAA------KEGGIFV  408 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G---~~v-------~~Leell------~~aDiIi  408 (718)
                      -.|++|.|+|.|.||..+++.++.+|++ |++++.++.+...+...+   +..       .++.+.+      +..|+++
T Consensus       178 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvi  257 (363)
T 3m6i_A          178 RLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVAL  257 (363)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEE
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEE
Confidence            3689999999999999999999999997 899987775532222112   111       1122222      2479999


Q ss_pred             EcCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       409 ~atgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .+.|....+ ...++.++++..++.+|...
T Consensus       258 d~~g~~~~~-~~~~~~l~~~G~iv~~G~~~  286 (363)
T 3m6i_A          258 ECTGVESSI-AAAIWAVKFGGKVFVIGVGK  286 (363)
T ss_dssp             ECSCCHHHH-HHHHHHSCTTCEEEECCCCC
T ss_pred             ECCCChHHH-HHHHHHhcCCCEEEEEccCC
Confidence            988864333 35688999999999998653

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=95.77  E-value=0.013  Score=62.43  Aligned_cols=67  Identities=18%  Similarity=0.146  Sum_probs=52.0

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHHhhcCce-ecCHHHHhc--cCcEEEEcCCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQASMEGYE-VTTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~G~~-v~~Leell~--~aDiIi~atgt~  414 (718)
                      -.+|||||+|.||+..++.++.. +++|. ++|+++.+...+...|.. +.++++++.  +.|+|++++.+.
T Consensus         5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~   76 (359)
T 3e18_A            5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPND   76 (359)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGG
T ss_pred             cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcH
Confidence            35899999999999999999877 77776 578887665444444554 468999997  789999988763

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=95.77  E-value=0.13  Score=54.84  Aligned_cols=169  Identities=9%  Similarity=-0.032  Sum_probs=112.0

Q ss_pred             chhhHHHHHhhhcccccCCcEEEEEecCC---------CChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHH
Q psy7896         251 CRESLVDGLKRATDIMLAGKVAVVAGYGD---------VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAA  321 (718)
Q Consensus       251 ~~es~~~~i~r~t~~~~~Gk~vvViGyG~---------vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~  321 (718)
                      .+||+-|.+.--.. +  . -+.|+...+         -.-.+..+++--+++|++...+...=.|++++-|.+.+    
T Consensus        89 kgEsl~DTarvLs~-y--~-D~IviR~~~~~~~~~~~~~~~~~~~lA~~~~vPVINa~~~~~HPtQaLaDl~Ti~e----  160 (324)
T 1js1_X           89 KPEHLLEAIPVMGC-Y--C-DIIGVRSFARFENREYDYNEVIINQFIQHSGRPVFSMEAATRHPLQSFADLITIEE----  160 (324)
T ss_dssp             CCEEHHHHHHHHHH-T--C-SEEEEECCCCSSCHHHHHHTHHHHHHHHHSSSCEEESSCSSCCHHHHHHHHHHHHH----
T ss_pred             CCCCHHHHHHHHHH-h--C-cEEEEecccccccccccccchHHHHHHhhCCCCEEECCCCCCCcHHHHHHHHHHHH----
Confidence            67888876653222 1  2 344454331         22223334455568999887766666777777665532    


Q ss_pred             HHHHHhcccccccchhhhhhhcc-cccCcEEEE-----EecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e
Q psy7896         322 LHLEHLGVKLTKLTEDQAKYLDI-MLAGKVAVV-----AGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V  394 (718)
Q Consensus       322 ~~l~~lgv~~~~~~~~~~~~~g~-eL~GktVGI-----IG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v  394 (718)
                                         ..|. .++ .+|++     +|=+++.+..+..+..||++|.++-+...........++. .
T Consensus       161 -------------------~~g~~~l~-l~ia~a~~~~vGD~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~  220 (324)
T 1js1_X          161 -------------------YKKTARPK-VVMTWAPHPRPLPQAVPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVE  220 (324)
T ss_dssp             -------------------HCSSSSCE-EEEECCCCSSCCCSHHHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEE
T ss_pred             -------------------HcCCCCee-EEEEEEcccccCCcchHHHHHHHHHHCCCEEEEeCCcccCCChhhccceEEE
Confidence                               1121 466 89999     9999999999999999999999985533322111112444 4


Q ss_pred             cCHHHHhccCcEEEEcC----C-----------CCCCcCHHHHhcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         395 TTMEEAAKEGGIFVTTT----G-----------CKDIIRGEHFLQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       395 ~~Leell~~aDiIi~at----g-----------t~~lI~~e~l~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      .+++|+++.+|||.+..    +           ....++.+.++.+| ++++.-++-.  +.||+.+-+..
T Consensus       221 ~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~eV~d~  290 (324)
T 1js1_X          221 YDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTDDVIES  290 (324)
T ss_dssp             SCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS-SCEEECCSCCCBTTTBCHHHHHS
T ss_pred             CCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC-CcEEECCCCCCCCcccCHHHhCC
Confidence            68999999999999831    1           12468999999999 9999999753  35787665543

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=95.76  E-value=0.29  Score=50.73  Aligned_cols=102  Identities=12%  Similarity=0.096  Sum_probs=70.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEE----cC---------
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVT----TT---------  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~----at---------  411 (718)
                      +.|++|.|+|........++.|...|.+|.+...+.. .  ....|... .++.+.++++|+++.    ..         
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~-~--~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~   81 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQL-D--HGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVF   81 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTS-S--CCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEecccc-c--cccccceeccchHHHHhcCCEEEeccccccCCccccccc
Confidence            6789999999999999999999999999987632111 0  01123332 235677889999886    11         


Q ss_pred             -CCCCCcCHHHHhcCCCCeEEEEcCCCCcccc-HHHHhccccce
Q psy7896         412 -GCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQ-VSWLDKNAVEK  453 (718)
Q Consensus       412 -gt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid-~~aL~~~~l~~  453 (718)
                       +.+..++++.++.+++..+++ +|. + -+| .+++.+.++.+
T Consensus        82 a~~~~~~~~~~l~~~~~l~~i~-~g~-~-~~d~~~~~~~~gi~v  122 (300)
T 2rir_A           82 SNEEVVLKQDHLDRTPAHCVIF-SGI-S-NAYLENIAAQAKRKL  122 (300)
T ss_dssp             CSSCEECCHHHHHTSCTTCEEE-ESS-C-CHHHHHHHHHTTCCE
T ss_pred             ccCCccchHHHHhhcCCCCEEE-Eec-C-CHHHHHHHHHCCCEE
Confidence             233347899999999998888 665 3 477 67776655433

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=95.75  E-value=0.026  Score=62.44  Aligned_cols=35  Identities=26%  Similarity=0.171  Sum_probs=31.6

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcC--CeEEEeecCch
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPI  303 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~G--v~VtV~D~dp~  303 (718)
                      .++++|||.|+.|..+|..|+++|  ..|++++..+.
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~   42 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   42 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCc
Confidence            468999999999999999999999  99999997653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.73  E-value=0.041  Score=55.92  Aligned_cols=37  Identities=22%  Similarity=0.091  Sum_probs=33.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       141 ~~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~  177 (311)
T 2q0l_A          141 YKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDG  177 (311)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCc
Confidence            3689999999999999999999999999999987653

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.73  E-value=0.038  Score=61.33  Aligned_cols=36  Identities=28%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.||..+|..++.+|.+|+++++.+.
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  208 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGS  208 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCc
Confidence            479999999999999999999999999999987664

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=95.73  E-value=0.084  Score=55.95  Aligned_cols=180  Identities=13%  Similarity=0.103  Sum_probs=111.4

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEe-ecCchhhhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT-EIDPINALQ  307 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~-D~dp~r~v~  307 (718)
                      |+-=++..++..     +...|-+||+.|...--.. +  . .+.|+....-+ .+...++--+++|++. +.+...=.|
T Consensus        65 LGg~~i~l~~~~-----~ss~~kgEsl~DTarvls~-~--~-D~iviR~~~~~-~~~~lA~~~~vPVINag~g~~~HPtQ  134 (306)
T 4ekn_B           65 LGGEVITMTDLK-----SSSVAKGESLIDTIRVISG-Y--A-DIIVLRHPSEG-AARLASEYSQVPIINAGDGSNQHPTQ  134 (306)
T ss_dssp             TTCEEEEECCCT-----TTTSSSSCCHHHHHHHHHH-H--C-SEEEEECSSTT-HHHHHHHHCSSCEEESCSSSSCCHHH
T ss_pred             cCCEEEEcCCcc-----cccCCCCCCHHHHHHHHHH-h--C-cEEEEEcCChH-HHHHHHHhCCCCEEeCCCCCCcCcHH
Confidence            444556665411     1224667888876653222 2  2 24444433222 3333445567899987 555555567


Q ss_pred             hhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhcccccCcEEEEEecC---hhHHHHHHHHHhC-CCEEEEEecCCcc
Q psy7896         308 ASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAGKVAVVAGYG---DVGKGCAQSLRLF-GSRVIVTEIDPIN  383 (718)
Q Consensus       308 AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G---~IG~~vA~~l~~f-Ga~Viv~d~dp~~  383 (718)
                      +.++-|.+-+                       ..| .+.|++|++||=|   ++....+..+..| |++|.++-+....
T Consensus       135 ~LaDl~Ti~e-----------------------~~g-~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~  190 (306)
T 4ekn_B          135 TLLDLYTIMR-----------------------EIG-RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELR  190 (306)
T ss_dssp             HHHHHHHHHH-----------------------HHS-CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHH-----------------------HhC-CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccc
Confidence            7777665432                       112 4889999999984   8999999999999 9999998543221


Q ss_pred             ---HH--HHhhcCce---ecCHHHHhccCcEEEEcCCC---------------CCCcCHHHHhcCCCCeEEEEcCCCCcc
Q psy7896         384 ---AL--QASMEGYE---VTTMEEAAKEGGIFVTTTGC---------------KDIIRGEHFLQMRDDAIVCNIGHFDCE  440 (718)
Q Consensus       384 ---al--~a~~~G~~---v~~Leell~~aDiIi~atgt---------------~~lI~~e~l~~MK~gAiLIN~GRgd~E  440 (718)
                         ..  .+...|..   ..+++|+++.+|+|.+....               ..-+|.+.++.  +++++.-+.--..|
T Consensus       191 ~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg~E  268 (306)
T 4ekn_B          191 LPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLPRVDE  268 (306)
T ss_dssp             CCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSCCSSS
T ss_pred             cCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeCCcccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCCCCCe
Confidence               11  12223543   35899999999999975211               13477777776  78888887753357


Q ss_pred             ccHH
Q psy7896         441 IQVS  444 (718)
Q Consensus       441 id~~  444 (718)
                      |+.+
T Consensus       269 I~~e  272 (306)
T 4ekn_B          269 IDYD  272 (306)
T ss_dssp             BCGG
T ss_pred             ecHh
Confidence            7644

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=95.72  E-value=0.016  Score=61.12  Aligned_cols=66  Identities=17%  Similarity=0.132  Sum_probs=50.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHH-HhhcCce-ecCHHHHhc--cCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQ-ASMEGYE-VTTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~-a~~~G~~-v~~Leell~--~aDiIi~atgt~  414 (718)
                      .+|||||+|.||+..++.++.. +++++ ++|+++.+... +...|.. +.++++++.  +.|+|++++.+.
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~   76 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTS   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGG
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCch
Confidence            5899999999999999999876 77766 68888765433 2223443 568999998  899999987653

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=95.72  E-value=0.011  Score=62.17  Aligned_cols=88  Identities=22%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------cee--cCHHHHhccCcEEEEcCCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YEV--TTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~v--~~Leell~~aDiIi~atgt~~  415 (718)
                      ++|+|||.|.+|..+|..+...|.  +|.++|+++.+... +  ..++      ..+  .+ .+.++.+|+|+.+.+...
T Consensus         1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~   79 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ   79 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence            479999999999999999988888  99999998753211 1  1111      112  23 367899999999865321


Q ss_pred             C--------------cCH---HHHhcCCCCeEEEEcCCC
Q psy7896         416 I--------------IRG---EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 l--------------I~~---e~l~~MK~gAiLIN~GRg  437 (718)
                      .              +-.   +.+....+++++++++-.
T Consensus        80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP  118 (304)
T 2v6b_A           80 KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNP  118 (304)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSS
T ss_pred             CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence            1              001   233444688899886553

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.70  E-value=0.03  Score=62.62  Aligned_cols=35  Identities=17%  Similarity=0.182  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .|+++.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       213 ~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~  247 (523)
T 1mo9_A          213 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE  247 (523)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC
Confidence            45999999999999999999999999999998765

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=95.70  E-value=0.27  Score=58.19  Aligned_cols=90  Identities=18%  Similarity=0.213  Sum_probs=65.3

Q ss_pred             cccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce------ecCHHHHh------ccCcEEEEcC
Q psy7896         345 MLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE------VTTMEEAA------KEGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~------v~~Leell------~~aDiIi~at  411 (718)
                      --.|++|.|.|. |.||+..++.++.+|++|+++...+..  +....|..      -.++.+.+      +..|+|+.+.
T Consensus       343 l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~k~--~~l~lga~~v~~~~~~~~~~~i~~~t~g~GvDvVld~~  420 (795)
T 3slk_A          343 LRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASEDKW--QAVELSREHLASSRTCDFEQQFLGATGGRGVDVVLNSL  420 (795)
T ss_dssp             CCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGGGG--GGSCSCGGGEECSSSSTHHHHHHHHSCSSCCSEEEECC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChHHh--hhhhcChhheeecCChhHHHHHHHHcCCCCeEEEEECC
Confidence            347999999996 999999999999999999998754421  11112321      12343333      2489999887


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.. .+ ...++.++++..++.+|..+
T Consensus       421 gg~-~~-~~~l~~l~~~Gr~v~iG~~~  445 (795)
T 3slk_A          421 AGE-FA-DASLRMLPRGGRFLELGKTD  445 (795)
T ss_dssp             CTT-TT-HHHHTSCTTCEEEEECCSTT
T ss_pred             CcH-HH-HHHHHHhcCCCEEEEecccc
Confidence            653 33 67899999999999999754

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=95.70  E-value=0.047  Score=59.98  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=31.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       187 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  220 (478)
T 3dk9_A          187 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD  220 (478)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC
Confidence            6899999999999999999999999999998755

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.70  E-value=0.0076  Score=65.02  Aligned_cols=115  Identities=14%  Similarity=0.113  Sum_probs=70.7

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh-----hhhhhhhhhhhHHH---HHHHHHHhccccccc-----
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA-----LQASMEGYELDEEV---AALHLEHLGVKLTKL-----  334 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~-----v~AvaeGf~L~r~i---~~~~l~~lgv~~~~~-----  334 (718)
                      .-.||+|||.|+.|..+|..|+..+..|++++..+...     ......+.....++   ....+...++.+...     
T Consensus         8 ~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~~V~~   87 (385)
T 3klj_A            8 KSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPYYRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSEFATS   87 (385)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCBCGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSCCEEE
T ss_pred             CCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCcccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCCEEEE
Confidence            34689999999999999999988899999998766531     11111111000000   111122223322100     


Q ss_pred             -c--------------------------hhhhhhhc-------------cccc-----CcEEEEEecChhHHHHHHHHHh
Q psy7896         335 -T--------------------------EDQAKYLD-------------IMLA-----GKVAVVAGYGDVGKGCAQSLRL  369 (718)
Q Consensus       335 -~--------------------------~~~~~~~g-------------~eL~-----GktVGIIG~G~IG~~vA~~l~~  369 (718)
                       .                          +......|             ..++     +++|.|||.|.+|..+|..++.
T Consensus        88 id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~~g~E~A~~l~~  167 (385)
T 3klj_A           88 IDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKAFIIGGGILGIELAQAIID  167 (385)
T ss_dssp             EETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCEEEECCSHHHHHHHHHHHH
T ss_pred             EECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHh
Confidence             0                          00000001             0121     8999999999999999999999


Q ss_pred             CCCEEEEEecCCc
Q psy7896         370 FGSRVIVTEIDPI  382 (718)
Q Consensus       370 fGa~Viv~d~dp~  382 (718)
                      +|.+|+++++.+.
T Consensus       168 ~g~~Vtvv~~~~~  180 (385)
T 3klj_A          168 SGTPASIGIILEY  180 (385)
T ss_dssp             HTCCEEEECSSSS
T ss_pred             CCCeEEEEEcCCc
Confidence            9999999987653

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.70  E-value=0.011  Score=66.14  Aligned_cols=94  Identities=15%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhC-CCEEEEEecCCccHHHHhh-cCcee-----c---CHHHHhccCcEEEEc
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDPINALQASM-EGYEV-----T---TMEEAAKEGGIFVTT  410 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~f-Ga~Viv~d~dp~~al~a~~-~G~~v-----~---~Leell~~aDiIi~a  410 (718)
                      +.+..+.+++|+|+|.|.+|+.+++.|... |.+|+++++++.++..... .+...     .   ++.++++.+|+||.+
T Consensus        16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~   95 (467)
T 2axq_A           16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL   95 (467)
T ss_dssp             -------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred             ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence            446778999999999999999999999887 7899999988765432211 23321     1   355678899999998


Q ss_pred             CCCCCCcCHH-HHhcCCCCeEEEEcCC
Q psy7896         411 TGCKDIIRGE-HFLQMRDDAIVCNIGH  436 (718)
Q Consensus       411 tgt~~lI~~e-~l~~MK~gAiLIN~GR  436 (718)
                      ++.. + ... ....++.+..++++.-
T Consensus        96 tp~~-~-~~~v~~a~l~~g~~vvd~~~  120 (467)
T 2axq_A           96 IPYT-F-HPNVVKSAIRTKTDVVTSSY  120 (467)
T ss_dssp             SCGG-G-HHHHHHHHHHHTCEEEECSC
T ss_pred             Cchh-h-hHHHHHHHHhcCCEEEEeec
Confidence            7752 1 111 1123455666666654

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=95.67  E-value=0.0081  Score=66.82  Aligned_cols=66  Identities=18%  Similarity=0.227  Sum_probs=50.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCce--------ecCHHHH-hccCcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYE--------VTTMEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~--------v~~Leel-l~~aDiIi~atgt  413 (718)
                      .++|.|+|+|++|+.+|+.|...|.+|++.|.||....... ..++.        ...|+++ +++||+++.+|+.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~   78 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT   78 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence            57899999999999999999999999999999986543221 12322        2236666 7899999987765

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=95.67  E-value=0.032  Score=56.84  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=34.0

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+.+++|.|||.|.+|..+|..++..|.+|+++++.+.
T Consensus       151 ~~~~~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~  188 (332)
T 3lzw_A          151 KFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK  188 (332)
T ss_dssp             GGBTCEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSS
T ss_pred             HcCCCEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCc
Confidence            35689999999999999999999999999999877653

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.67  E-value=0.046  Score=59.98  Aligned_cols=35  Identities=23%  Similarity=0.256  Sum_probs=32.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       177 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  211 (474)
T 1zmd_A          177 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG  211 (474)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC
Confidence            36899999999999999999999999999998765

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=95.66  E-value=0.01  Score=62.04  Aligned_cols=85  Identities=18%  Similarity=0.148  Sum_probs=57.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecC----------H-HHHhccCcEEEEcCCCCCCc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTT----------M-EEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~----------L-eell~~aDiIi~atgt~~lI  417 (718)
                      ++|+|||.|.||..+|..|. -|.+|+++++++.........|..+..          . ++....+|+|++++....+ 
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~~~-   80 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQHQL-   80 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGGGH-
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHHHH-
Confidence            68999999999999999999 899999998876432222234543321          0 2456789999998765433 


Q ss_pred             CHHHHhc---CCCCeEEEEcCCC
Q psy7896         418 RGEHFLQ---MRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~---MK~gAiLIN~GRg  437 (718)
                       .+.++.   +.++. ++.+.-|
T Consensus        81 -~~~l~~l~~~~~~~-ivs~~nG  101 (307)
T 3ego_A           81 -QSVFSSLERIGKTN-ILFLQNG  101 (307)
T ss_dssp             -HHHHHHTTSSCCCE-EEECCSS
T ss_pred             -HHHHHHhhcCCCCe-EEEecCC
Confidence             233333   34566 6666554

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=95.65  E-value=0.027  Score=63.75  Aligned_cols=39  Identities=18%  Similarity=0.188  Sum_probs=35.4

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++.||+|+|||.|.+|..+|..+...|.+|+++.+.|.
T Consensus       187 ~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          187 VDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             cccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            356899999999999999999999999999999988774

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=95.63  E-value=0.03  Score=61.43  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=32.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  205 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD  205 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC
Confidence            46999999999999999999999999999998755

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=95.63  E-value=0.046  Score=59.78  Aligned_cols=35  Identities=29%  Similarity=0.483  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.||..+|..++.+|.+|+++++.+
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  204 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLP  204 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            36999999999999999999999999999998765

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=95.62  E-value=0.044  Score=59.92  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=32.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  201 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA  201 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence            378999999999999999999999999999987653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=95.62  E-value=0.041  Score=58.47  Aligned_cols=87  Identities=20%  Similarity=0.150  Sum_probs=59.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH---Hhh--------c-Ccee-cCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ---ASM--------E-GYEV-TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~---a~~--------~-G~~v-~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||.|.+|..+|..+...|. +|.++|+++.....   ...        . -+.. .++ +.++.||+|+.+.+..
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p   93 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVP   93 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            689999999999999999988888 99999998754221   000        1 1222 456 7889999999985432


Q ss_pred             ---CC-----------cCH---HHHhcCCCCeEEEEcCC
Q psy7896         415 ---DI-----------IRG---EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ---~l-----------I~~---e~l~~MK~gAiLIN~GR  436 (718)
                         ++           +-.   +.+....++++++|++.
T Consensus        94 ~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  132 (328)
T 2hjr_A           94 RKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITN  132 (328)
T ss_dssp             CCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecC
Confidence               22           011   12333357889988755

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=95.62  E-value=0.011  Score=62.67  Aligned_cols=90  Identities=17%  Similarity=0.120  Sum_probs=64.9

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHH-Hh-----ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEE-AA-----KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Lee-ll-----~~aDiIi~atg  412 (718)
                      -.|++|.|+| .|.||..+++.++..|++|+++++++.+...+...|.. +.     +..+ +.     ...|+++.+.|
T Consensus       161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~G  240 (354)
T 2j8z_A          161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLGAAAGFNYKKEDFSEATLKFTKGAGVNLILDCIG  240 (354)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESSC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCcEEEecCChHHHHHHHHHhcCCCceEEEECCC
Confidence            3689999999 79999999999999999999998876543323223432 11     2222 22     14799998888


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .. . -...++.|+++..++.+|..
T Consensus       241 ~~-~-~~~~~~~l~~~G~iv~~G~~  263 (354)
T 2j8z_A          241 GS-Y-WEKNVNCLALDGRWVLYGLM  263 (354)
T ss_dssp             GG-G-HHHHHHHEEEEEEEEECCCT
T ss_pred             ch-H-HHHHHHhccCCCEEEEEecc
Confidence            74 2 34568889999999999864

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.59  E-value=0.01  Score=61.86  Aligned_cols=89  Identities=17%  Similarity=0.139  Sum_probs=63.5

Q ss_pred             cCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHH-Hh-----ccCcEEEEcCCC
Q psy7896         347 AGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEE-AA-----KEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Lee-ll-----~~aDiIi~atgt  413 (718)
                      .|++|.|+| .|.||..+++.++.+|++|+++++++.+...+...|.. +.     +..+ +.     ...|+++.+.|.
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~~g~  219 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVGR  219 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSCG
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCCCEEEECCCccHHHHHHHHhCCCCceEEEECCch
Confidence            689999999 79999999999999999999998876543322223332 11     2222 22     136899888872


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                        -.-...++.|+++..++.+|..
T Consensus       220 --~~~~~~~~~l~~~G~iv~~g~~  241 (327)
T 1qor_A          220 --DTWERSLDCLQRRGLMVSFGNS  241 (327)
T ss_dssp             --GGHHHHHHTEEEEEEEEECCCT
T ss_pred             --HHHHHHHHHhcCCCEEEEEecC
Confidence              2234668889999999998864

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=95.59  E-value=0.017  Score=61.25  Aligned_cols=66  Identities=11%  Similarity=-0.014  Sum_probs=50.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHH-hhcCce-ecCHHHHh--ccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQA-SMEGYE-VTTMEEAA--KEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~~-v~~Leell--~~aDiIi~atgt~  414 (718)
                      .+|||||+|.||+..++.++.. |++++ ++|+++.+.... ...|.. +.++++++  .+.|+|++++.+.
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~   77 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPND   77 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred             ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence            5899999999999999999887 78865 688887654332 223443 46899999  5689999987763

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=95.58  E-value=0.013  Score=61.33  Aligned_cols=90  Identities=20%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHH----Hh--ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEE----AA--KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Lee----ll--~~aDiIi~atg  412 (718)
                      -.|++|.|+|. |.||+.+++.++.+|++|+++++++.+...+...|.. +     .+..+    +.  +..|+++.++|
T Consensus       144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~i~~~~~~~~~d~vi~~~g  223 (333)
T 1wly_A          144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLGCHHTINYSTQDFAEVVREITGGKGVDVVYDSIG  223 (333)
T ss_dssp             CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHTTCCEEEEEECSC
T ss_pred             CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCCHHHHHHHHHHhCCCCCeEEEECCc
Confidence            36899999995 9999999999999999999998877443222223332 1     12222    22  24799998887


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      . .. -...++.|+++..++.+|..
T Consensus       224 ~-~~-~~~~~~~l~~~G~iv~~g~~  246 (333)
T 1wly_A          224 K-DT-LQKSLDCLRPRGMCAAYGHA  246 (333)
T ss_dssp             T-TT-HHHHHHTEEEEEEEEECCCT
T ss_pred             H-HH-HHHHHHhhccCCEEEEEecC
Confidence            6 22 34678889999999999864

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=95.58  E-value=0.018  Score=61.50  Aligned_cols=75  Identities=23%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHH------hh----------hcccccCCcEEEEEecCCCChhHHHHHHhcC
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGL------KR----------ATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG  292 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i------~r----------~t~~~~~Gk~vvViGyG~vG~~~A~aLra~G  292 (718)
                      .+++|.|+.+.......|...+.-=++.+.+      .|          ..+..+.|+++.|||+|.+|..+|+.|+++|
T Consensus        89 ~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G  168 (330)
T 4e5n_A           89 RGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWG  168 (330)
T ss_dssp             TTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHHHHHTTTSC
T ss_pred             cCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHHHHHHHHCC
Confidence            4678888887777666665554211111111      11          1123478999999999999999999999999


Q ss_pred             CeEEEeecCch
Q psy7896         293 SRVIVTEIDPI  303 (718)
Q Consensus       293 v~VtV~D~dp~  303 (718)
                      ++|.+++..+.
T Consensus       169 ~~V~~~d~~~~  179 (330)
T 4e5n_A          169 ATLQYHEAKAL  179 (330)
T ss_dssp             CEEEEECSSCC
T ss_pred             CEEEEECCCCC
Confidence            99999988763

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=95.57  E-value=0.019  Score=62.47  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=32.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~  182 (431)
T 1q1r_A          148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA  182 (431)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC
Confidence            48999999999999999999999999999998655

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=95.54  E-value=0.04  Score=57.90  Aligned_cols=87  Identities=15%  Similarity=0.141  Sum_probs=60.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHH------HHhh----cCcee---cCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINAL------QASM----EGYEV---TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al------~a~~----~G~~v---~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|.+|..+|..+...|.  +|.++|+++.+..      ....    ....+   .+ .+.++.||+|+++.|.
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~   79 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL   79 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence            479999999999999999977776  9999999885431      1111    11122   25 7889999999998653


Q ss_pred             C---CC-----c--C-------HHHHhcCCCCeEEEEcCC
Q psy7896         414 K---DI-----I--R-------GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 ~---~l-----I--~-------~e~l~~MK~gAiLIN~GR  436 (718)
                      .   ++     +  |       .+.+....+++++++++.
T Consensus        80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN  119 (294)
T 1oju_A           80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (294)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            2   22     1  1       123556688999999885

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=95.54  E-value=0.018  Score=60.97  Aligned_cols=67  Identities=19%  Similarity=0.272  Sum_probs=51.4

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC--CCEEE-EEecCCccHHHH-hhcCce-ecCHHHHhc--cCcEEEEcCCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF--GSRVI-VTEIDPINALQA-SMEGYE-VTTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f--Ga~Vi-v~d~dp~~al~a-~~~G~~-v~~Leell~--~aDiIi~atgt~  414 (718)
                      -.+|||||+|.||+..++.++..  +++++ ++|+++.++... ...|.. +.+++++++  +.|+|++++.+.
T Consensus        13 ~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   86 (354)
T 3q2i_A           13 KIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSG   86 (354)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGG
T ss_pred             cceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcH
Confidence            36899999999999999999877  78866 788887654332 223543 468999997  789999988763

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=95.53  E-value=0.0072  Score=63.13  Aligned_cols=90  Identities=16%  Similarity=0.148  Sum_probs=66.9

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cC-HHHHhccCcEEEEcCCCCCCc
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TT-MEEAAKEGGIFVTTTGCKDII  417 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~-Leell~~aDiIi~atgt~~lI  417 (718)
                      -.|++|.|+| .|.||..+++.++.+|++|+++..+. +...+...|.. +     .+ +.+.++..|+++.++|.... 
T Consensus       151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~-~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~~~-  228 (321)
T 3tqh_A          151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKR-NHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGDVG-  228 (321)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHH-HHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHHHH-
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccc-hHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcHHH-
Confidence            4689999997 99999999999999999999886432 22222333443 1     12 55556778999998886543 


Q ss_pred             CHHHHhcCCCCeEEEEcCCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRgd  438 (718)
                       ...++.++++..++.+|...
T Consensus       229 -~~~~~~l~~~G~iv~~g~~~  248 (321)
T 3tqh_A          229 -IQSIDCLKETGCIVSVPTIT  248 (321)
T ss_dssp             -HHHGGGEEEEEEEEECCSTT
T ss_pred             -HHHHHhccCCCEEEEeCCCC
Confidence             67889999999999987643

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=95.52  E-value=0.024  Score=62.19  Aligned_cols=34  Identities=32%  Similarity=0.310  Sum_probs=31.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC-CCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f-Ga~Viv~d~dp  381 (718)
                      ++++.|||.|.+|..+|..++.+ |.+|+++++.+
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~  193 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD  193 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC
Confidence            79999999999999999999999 99999998655

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=95.49  E-value=0.014  Score=61.55  Aligned_cols=89  Identities=17%  Similarity=0.225  Sum_probs=57.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC-------cee-cCHHHHhccCcEEEEcCCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG-------YEV-TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G-------~~v-~~Leell~~aDiIi~atgt~  414 (718)
                      -++|+|||.|.||..+|..++..|.  +|.++|+++.+... +  ..+.       ..+ .+..+.++.||+|+++.+..
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~   85 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN   85 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence            3689999999999999998876554  89999998753211 0  1111       111 12456789999999985432


Q ss_pred             C---C-----c------C---HHHHhcCCCCeEEEEcCC
Q psy7896         415 D---I-----I------R---GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ~---l-----I------~---~e~l~~MK~gAiLIN~GR  436 (718)
                      .   +     +      -   .+.+....++++++|++.
T Consensus        86 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN  124 (316)
T 1ldn_A           86 QKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (316)
T ss_dssp             CCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            1   1     0      0   122333457888888866

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=95.49  E-value=0.018  Score=60.41  Aligned_cols=83  Identities=16%  Similarity=0.165  Sum_probs=56.5

Q ss_pred             cEEEEEecChhHHHHHHHHH-h-CCCEE-EEEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcCCCCCCcCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLR-L-FGSRV-IVTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTTGCKDIIRGE  420 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~-~-fGa~V-iv~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~atgt~~lI~~e  420 (718)
                      .+|||||+|.||+..++.++ . -|+++ .++|+++.+.... ...|.  .+.++++++.  +.|+|++++.+... -.-
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h-~~~   87 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFH-PEM   87 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGH-HHH
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhH-HHH
Confidence            58999999999999999887 5 47775 4688887654322 22354  2468999986  68999998876321 122


Q ss_pred             HHhcCCCCe-EEE
Q psy7896         421 HFLQMRDDA-IVC  432 (718)
Q Consensus       421 ~l~~MK~gA-iLI  432 (718)
                      ....++.|. +++
T Consensus        88 ~~~al~~G~~v~~  100 (346)
T 3cea_A           88 TIYAMNAGLNVFC  100 (346)
T ss_dssp             HHHHHHTTCEEEE
T ss_pred             HHHHHHCCCEEEE
Confidence            334566665 444

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=95.48  E-value=0.042  Score=56.43  Aligned_cols=37  Identities=24%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +.+++|.|||.|.+|..+|..+...|.+|+++++.+.
T Consensus       150 ~~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~  186 (335)
T 2zbw_A          150 FQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ  186 (335)
T ss_dssp             GTTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSSS
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCCc
Confidence            4689999999999999999999999999999987653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.47  E-value=0.032  Score=61.00  Aligned_cols=36  Identities=31%  Similarity=0.300  Sum_probs=32.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.||..+|..++.+|.+|+++++.+.
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~  211 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE  211 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCc
Confidence            469999999999999999999999999999987653

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=95.47  E-value=0.019  Score=59.55  Aligned_cols=67  Identities=10%  Similarity=0.044  Sum_probs=50.7

Q ss_pred             CcEEEEEecChhHHH-HHHHHHh-CCCEEE-EEecCCccHHHH-hhcCce-ecCHHHHhccCcEEEEcCCCC
Q psy7896         348 GKVAVVAGYGDVGKG-CAQSLRL-FGSRVI-VTEIDPINALQA-SMEGYE-VTTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~-vA~~l~~-fGa~Vi-v~d~dp~~al~a-~~~G~~-v~~Leell~~aDiIi~atgt~  414 (718)
                      -.+|||||+|+||+. .++.++. -+++++ ++|+++.++... ...|.. +.++++++.+.|+|++++.+.
T Consensus         6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~   77 (308)
T 3uuw_A            6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTE   77 (308)
T ss_dssp             CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGG
T ss_pred             cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcH
Confidence            468999999999996 8887876 477877 788888654332 223433 568999999999999987763

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.47  E-value=0.051  Score=55.33  Aligned_cols=35  Identities=20%  Similarity=0.116  Sum_probs=32.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~  178 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD  178 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC
Confidence            58999999999999999999999999999998665

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=95.46  E-value=0.028  Score=63.13  Aligned_cols=90  Identities=20%  Similarity=0.305  Sum_probs=58.9

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEE-Ee-------cCCcc--HHHHh--hcC-------ceecCHHHHh-ccC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV-TE-------IDPIN--ALQAS--MEG-------YEVTTMEEAA-KEG  404 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv-~d-------~dp~~--al~a~--~~G-------~~v~~Leell-~~a  404 (718)
                      +|.|+||.|.|+|++|+.+|+.|..+|++|+. .|       .+-..  .+...  ..|       .+..+ ++++ -.|
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~  319 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC  319 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence            68999999999999999999999999999886 33       12111  11110  111       11211 1443 379


Q ss_pred             cEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         405 GIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       405 DiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ||++.|... +.|+.+...+++.. +++-.+.+
T Consensus       320 DIliPcA~~-n~I~~~na~~l~ak-iV~EgAN~  350 (501)
T 3mw9_A          320 DILIPAASE-KQLTKSNAPRVKAK-IIAEGANG  350 (501)
T ss_dssp             SEEEECSSS-CCBCTTTGGGCCCS-EEECCSSS
T ss_pred             eEEeecccc-CccCHhHHHHcCce-EEEeCCCC
Confidence            999987544 78999999888742 34433443

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=95.46  E-value=0.017  Score=60.93  Aligned_cols=66  Identities=12%  Similarity=0.165  Sum_probs=50.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~atgt~  414 (718)
                      .+|||||+|.||+..++.++.. +++++ ++|+++.+.... ...|.  .+.++++++.  +.|+|++++.+.
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   75 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTN   75 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCc
Confidence            4799999999999999998775 67766 688887654332 22343  3578999998  799999988763

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=95.45  E-value=0.054  Score=59.34  Aligned_cols=35  Identities=23%  Similarity=0.169  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  213 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD  213 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC
Confidence            47899999999999999999999999999998765

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.42  E-value=0.019  Score=63.38  Aligned_cols=68  Identities=24%  Similarity=0.300  Sum_probs=50.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc---HH-HHhhcCceec---CHHHHhcc-CcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN---AL-QASMEGYEVT---TMEEAAKE-GGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~a~~~G~~v~---~Leell~~-aDiIi~atg  412 (718)
                      ++.||+|.|||.|.+|+++|+.|+..|++|+++|..+..   .. .....|..+.   ..++++.. +|+||..++
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spg   81 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPG   81 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTT
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCc
Confidence            468999999999999999999999999999999986531   11 1123466542   23345666 899998654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=95.41  E-value=0.065  Score=58.86  Aligned_cols=35  Identities=34%  Similarity=0.463  Sum_probs=32.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~  199 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALED  199 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            36899999999999999999999999999998765

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=95.40  E-value=0.011  Score=62.50  Aligned_cols=91  Identities=15%  Similarity=0.196  Sum_probs=63.2

Q ss_pred             ccCcEEEEEecC-hhHHHHHHHHHhC-CCEEEEEecCCccHHHHhhcCce-ec-----C----HHHHh--ccCcEEEEcC
Q psy7896         346 LAGKVAVVAGYG-DVGKGCAQSLRLF-GSRVIVTEIDPINALQASMEGYE-VT-----T----MEEAA--KEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G-~IG~~vA~~l~~f-Ga~Viv~d~dp~~al~a~~~G~~-v~-----~----Leell--~~aDiIi~at  411 (718)
                      -.|++|.|+|.| .||..+++.++.+ |++|+++++++.+...+...|.. +.     +    +.++.  ...|+++.+.
T Consensus       169 ~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~  248 (347)
T 1jvb_A          169 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  248 (347)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCEEecCCCccHHHHHHHHhcCCCceEEEECC
Confidence            368999999999 9999999999998 99999998877543323223432 11     1    22333  2468888887


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      |....+. ..++.|+++..++.+|..
T Consensus       249 g~~~~~~-~~~~~l~~~G~iv~~g~~  273 (347)
T 1jvb_A          249 NSEKTLS-VYPKALAKQGKYVMVGLF  273 (347)
T ss_dssp             CCHHHHT-TGGGGEEEEEEEEECCSS
T ss_pred             CCHHHHH-HHHHHHhcCCEEEEECCC
Confidence            7542332 456778888888888754

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.39  E-value=0.018  Score=63.76  Aligned_cols=67  Identities=18%  Similarity=0.149  Sum_probs=49.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCce-----ec---CHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYE-----VT---TMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~-----v~---~Leell~~aDiIi~atgt  413 (718)
                      .+|+|+|+|.|.||+.+++.|...|.+|+++++++.+......  .+..     +.   ++.++++.+|+|+.+++.
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~   78 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPY   78 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCcc
Confidence            4789999999999999999999999999999988754322211  1121     22   345778899999998764

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=95.39  E-value=0.016  Score=63.38  Aligned_cols=90  Identities=18%  Similarity=0.199  Sum_probs=65.9

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cC------------------------HHH
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TT------------------------MEE  399 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~------------------------Lee  399 (718)
                      -.|++|.|+|. |.||..+++.++.+|++|++++.++.+...+...|... .+                        .++
T Consensus       219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (447)
T 4a0s_A          219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKL  298 (447)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHH
Confidence            46899999998 99999999999999999999887665543333445421 11                        111


Q ss_pred             ---Hh-ccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         400 ---AA-KEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       400 ---ll-~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                         +. +..|+++.++|..  .-...+..|+++..++++|..
T Consensus       299 v~~~~g~g~Dvvid~~G~~--~~~~~~~~l~~~G~iv~~G~~  338 (447)
T 4a0s_A          299 VVEKAGREPDIVFEHTGRV--TFGLSVIVARRGGTVVTCGSS  338 (447)
T ss_dssp             HHHHHSSCCSEEEECSCHH--HHHHHHHHSCTTCEEEESCCT
T ss_pred             HHHHhCCCceEEEECCCch--HHHHHHHHHhcCCEEEEEecC
Confidence               11 2489999988863  224667899999999999864

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=95.38  E-value=0.016  Score=60.91  Aligned_cols=67  Identities=15%  Similarity=-0.015  Sum_probs=51.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcCCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~atgt~  414 (718)
                      -.+|||||+|.||+..++.++.. +++|+ ++|+++.++... ...|.  .+.++++++.  +.|+|++++.+.
T Consensus         5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~   78 (330)
T 3e9m_A            5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ   78 (330)
T ss_dssp             CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG
T ss_pred             eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH
Confidence            35899999999999999999885 67766 678887654332 23344  3568999997  789999987763

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=95.36  E-value=0.063  Score=58.57  Aligned_cols=36  Identities=28%  Similarity=0.268  Sum_probs=32.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|++++..+.
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~  201 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR  201 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            468999999999999999999999999999987653

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.35  E-value=0.027  Score=61.80  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=32.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  205 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER  205 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCc
Confidence            378999999999999999999999999999987653

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.35  E-value=0.012  Score=62.00  Aligned_cols=91  Identities=22%  Similarity=0.247  Sum_probs=67.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhC-CCEEEEEecCCccHHHHhhcCceec-----CHHH----Hhc--cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDPINALQASMEGYEVT-----TMEE----AAK--EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~f-Ga~Viv~d~dp~~al~a~~~G~~v~-----~Lee----ll~--~aDiIi~atgt  413 (718)
                      -.|.+|.|+|.|.||...++.++.+ |++|++++.++.+...+...|...+     ++.+    +..  ..|+++-+.|.
T Consensus       170 ~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~v~~~t~g~g~d~v~d~~G~  249 (345)
T 3jv7_A          170 GPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGADAAVKSGAGAADAIRELTGGQGATAVFDFVGA  249 (345)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCSEEEECSTTHHHHHHHHHGGGCEEEEEESSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCCEEEcCCCcHHHHHHHHhCCCCCeEEEECCCC
Confidence            4689999999999999999999998 7899999888766544444554311     2222    222  57999988887


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...+ ...++.++++..++.+|..
T Consensus       250 ~~~~-~~~~~~l~~~G~iv~~G~~  272 (345)
T 3jv7_A          250 QSTI-DTAQQVVAVDGHISVVGIH  272 (345)
T ss_dssp             HHHH-HHHHHHEEEEEEEEECSCC
T ss_pred             HHHH-HHHHHHHhcCCEEEEECCC
Confidence            5333 3568889999999999864

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.34  E-value=0.031  Score=58.68  Aligned_cols=89  Identities=12%  Similarity=0.025  Sum_probs=59.9

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh------------hcCcee-cCHHHHhccCcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS------------MEGYEV-TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~------------~~G~~v-~~Leell~~aDiIi~atgt  413 (718)
                      .++|+|||.|.+|..+|..+...|. +|.++|+++.......            ...+.. .++ +.++.+|+|+.+.+.
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~   82 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI   82 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence            4689999999999999999988887 9999999875422110            011222 456 778999999998643


Q ss_pred             C---CCc-----------CHH---HHhcCCCCeEEEEcCCC
Q psy7896         414 K---DII-----------RGE---HFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~---~lI-----------~~e---~l~~MK~gAiLIN~GRg  437 (718)
                      .   ++-           -.+   .+....+++++++++..
T Consensus        83 p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp  123 (317)
T 2ewd_A           83 PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNP  123 (317)
T ss_dssp             SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred             CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCCh
Confidence            2   110           011   12233568999988764

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.33  E-value=0.029  Score=59.47  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH---Hhhc-------C--cee-cCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ---ASME-------G--YEV-TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~---a~~~-------G--~~v-~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|.+|..+|..+...|. +|.++|+++.+...   ...+       .  +.. .++ +.++.||+|+.+.+
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g   81 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG   81 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence            589999999999999999988887 89999998754211   0011       1  222 456 78999999999853

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=95.33  E-value=0.019  Score=58.83  Aligned_cols=39  Identities=3%  Similarity=0.008  Sum_probs=32.3

Q ss_pred             ccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++++++.|||.|.+ +..+|..++.+|.+|++...++.
T Consensus       142 ~~~~~~~~~VIggG~~~~~e~a~~~~~~~~~v~i~~~~~~  181 (304)
T 4fk1_A          142 WELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNE  181 (304)
T ss_dssp             GGGTTSCEEEECCSHHHHHHHHHHHTTTCSCEEEECSSCC
T ss_pred             hHhcCCceeeecCCCchhhhHHHHHHhCCceEEEEecccc
Confidence            4578899999999975 67899999999999999876543

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=95.33  E-value=0.04  Score=58.83  Aligned_cols=90  Identities=20%  Similarity=0.126  Sum_probs=64.8

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHhc-----cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAAK-----EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell~-----~aDiIi~atgt  413 (718)
                      -.|++|.|+|. |.||..+++.++.+|++|+++. ++.+...+...|.. +     .++.+.++     ..|+++-++|.
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~  241 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITN  241 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCS
T ss_pred             CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCc
Confidence            47899999999 8999999999999999998874 56554444445543 1     12333332     37999998886


Q ss_pred             CCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQM-RDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~M-K~gAiLIN~GRg  437 (718)
                      ...+ ...++.+ +++..++.+|..
T Consensus       242 ~~~~-~~~~~~l~~~~G~iv~~g~~  265 (371)
T 3gqv_A          242 VEST-TFCFAAIGRAGGHYVSLNPF  265 (371)
T ss_dssp             HHHH-HHHHHHSCTTCEEEEESSCC
T ss_pred             hHHH-HHHHHHhhcCCCEEEEEecC
Confidence            4333 3456778 689999999854

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=95.32  E-value=0.055  Score=55.40  Aligned_cols=34  Identities=24%  Similarity=0.265  Sum_probs=31.2

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+++|||.|+.|+.+|..|+++|.+|+++|..+.
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~   37 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            4799999999999999999999999999997753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.30  E-value=0.058  Score=59.03  Aligned_cols=35  Identities=26%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  209 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGSKVTVLARNT  209 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECC
Confidence            37999999999999999999999999999998655

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=95.24  E-value=0.027  Score=60.11  Aligned_cols=64  Identities=22%  Similarity=0.284  Sum_probs=47.7

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHHhhcCce-ecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQASMEGYE-VTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~G~~-v~~Leell~--~aDiIi~atgt  413 (718)
                      .+|||||+|.||+. .++.++.. +++|. ++|+++.+... ...+.. +.++++++.  +.|+|+++|.+
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   77 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPN   77 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCG
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCCh
Confidence            58999999999997 67777766 77875 67888754432 222333 568999998  78999998776

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.24  E-value=0.056  Score=57.53  Aligned_cols=90  Identities=17%  Similarity=0.169  Sum_probs=60.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHH------HHhh----cCcee---cCHHHHhccCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINAL------QASM----EGYEV---TTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al------~a~~----~G~~v---~~Leell~~aDiIi~at  411 (718)
                      ++.++|+|||.|.+|..+|..+...|. +|.++|+++.+..      ....    ....+   .+. +.++.||+|+++.
T Consensus         5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa   83 (324)
T 3gvi_A            5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA   83 (324)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred             CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence            456799999999999999999987777 9999999886431      1110    11122   244 7899999999986


Q ss_pred             CC---CCC-----c--CH-------HHHhcCCCCeEEEEcCC
Q psy7896         412 GC---KDI-----I--RG-------EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       412 gt---~~l-----I--~~-------e~l~~MK~gAiLIN~GR  436 (718)
                      |.   .++     +  |.       +.+....+++++++++.
T Consensus        84 g~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           84 GVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             SCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            53   222     1  11       22334468889999875

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=95.22  E-value=0.022  Score=53.14  Aligned_cols=85  Identities=16%  Similarity=0.148  Sum_probs=59.9

Q ss_pred             ccCcEEEEEec----ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcCCCCC---Cc
Q psy7896         346 LAGKVAVVAGY----GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTTGCKD---II  417 (718)
Q Consensus       346 L~GktVGIIG~----G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~atgt~~---lI  417 (718)
                      ++-++|+|||.    |++|..+++.++..|.+|..+  +|...   ...|..+. +++|+....|+++++.....   ++
T Consensus        12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~v--np~~~---~i~G~~~~~s~~el~~~vDlvii~vp~~~v~~v~   86 (138)
T 1y81_A           12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPV--NPNYD---EIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVA   86 (138)
T ss_dssp             --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEE--CTTCS---EETTEECBSSGGGSCTTCCEEEECSCHHHHHHHH
T ss_pred             cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEe--CCCCC---eECCeeecCCHHHhCCCCCEEEEEeCHHHHHHHH
Confidence            46789999999    999999999999999985555  55431   12466554 78999889999999865422   22


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                      . + +..+..++++++++..
T Consensus        87 ~-~-~~~~g~~~i~~~~~~~  104 (138)
T 1y81_A           87 K-E-AVEAGFKKLWFQPGAE  104 (138)
T ss_dssp             H-H-HHHTTCCEEEECTTSC
T ss_pred             H-H-HHHcCCCEEEEcCccH
Confidence            1 2 3336677888887654

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=95.22  E-value=0.026  Score=58.83  Aligned_cols=83  Identities=17%  Similarity=0.256  Sum_probs=55.7

Q ss_pred             EEEEEecChhHHHH-HHHHHhCCCEEE-EEecCCccHHH-HhhcCc--eecCHHHHhc--cCcEEEEcCCCCCCcCHHHH
Q psy7896         350 VAVVAGYGDVGKGC-AQSLRLFGSRVI-VTEIDPINALQ-ASMEGY--EVTTMEEAAK--EGGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       350 tVGIIG~G~IG~~v-A~~l~~fGa~Vi-v~d~dp~~al~-a~~~G~--~v~~Leell~--~aDiIi~atgt~~lI~~e~l  422 (718)
                      +|||||+|.+|+.. ++.+..-|.+++ ++|+++.+... +...|.  .+.+++++++  +.|+|++++.+.. --.-..
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~-h~~~~~   80 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNEL-HREQTL   80 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGG-HHHHHH
T ss_pred             eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhH-hHHHHH
Confidence            79999999999997 777666788866 68888765432 222344  2468999987  4999999887531 112223


Q ss_pred             hcCCCCe-EEEE
Q psy7896         423 LQMRDDA-IVCN  433 (718)
Q Consensus       423 ~~MK~gA-iLIN  433 (718)
                      ..++.|. +++.
T Consensus        81 ~al~~Gk~v~~e   92 (332)
T 2glx_A           81 AAIRAGKHVLCE   92 (332)
T ss_dssp             HHHHTTCEEEEC
T ss_pred             HHHHCCCeEEEe
Confidence            4566665 4443

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=95.20  E-value=0.016  Score=61.24  Aligned_cols=89  Identities=21%  Similarity=0.325  Sum_probs=63.0

Q ss_pred             cC--cEEEEEec-ChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhh-cCce-ec-----CHHHHhc-----cCcEEEEc
Q psy7896         347 AG--KVAVVAGY-GDVGKGCAQSLRLFGS-RVIVTEIDPINALQASM-EGYE-VT-----TMEEAAK-----EGGIFVTT  410 (718)
Q Consensus       347 ~G--ktVGIIG~-G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~-~G~~-v~-----~Leell~-----~aDiIi~a  410 (718)
                      .|  ++|.|.|. |.||+.+++.++.+|+ +|+++++++.+...+.. .|.. +.     +..+.+.     ..|+++.+
T Consensus       158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~d~vi~~  237 (357)
T 2zb4_A          158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELGFDAAINYKKDNVAEQLRESCPAGVDVYFDN  237 (357)
T ss_dssp             TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCCSEEEETTTSCHHHHHHHHCTTCEEEEEES
T ss_pred             CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCceEEecCchHHHHHHHHhcCCCCCEEEEC
Confidence            57  99999998 9999999999999999 99999887654332222 3432 11     2323322     36888888


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +|..  .-...++.|+++..++.+|..
T Consensus       238 ~G~~--~~~~~~~~l~~~G~iv~~G~~  262 (357)
T 2zb4_A          238 VGGN--ISDTVISQMNENSHIILCGQI  262 (357)
T ss_dssp             CCHH--HHHHHHHTEEEEEEEEECCCG
T ss_pred             CCHH--HHHHHHHHhccCcEEEEECCc
Confidence            7742  234567888999999888763

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.20  E-value=0.084  Score=57.78  Aligned_cols=35  Identities=14%  Similarity=0.149  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .++++.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~  203 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK  203 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC
Confidence            37999999999999999999999999999998765

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.17  E-value=0.015  Score=56.61  Aligned_cols=88  Identities=9%  Similarity=0.040  Sum_probs=56.2

Q ss_pred             cEEEEEe-cChhHHHHHHHHH-hCCCEEEEEecCCc-cHHHH--hhcCcee--------cCHHHHhccCcEEEEcCCCCC
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLR-LFGSRVIVTEIDPI-NALQA--SMEGYEV--------TTMEEAAKEGGIFVTTTGCKD  415 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~-~fGa~Viv~d~dp~-~al~a--~~~G~~v--------~~Leell~~aDiIi~atgt~~  415 (718)
                      |+|.|.| .|.||+.+++.|. ..|++|++.++++. +..+.  ...+..+        .+++++++..|+++.+.+..+
T Consensus         6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag~~n   85 (221)
T 3r6d_A            6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAMESG   85 (221)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCCCCH
T ss_pred             EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCCCCC
Confidence            6799999 5999999999999 89999999988765 32211  1122221        234567788999988776432


Q ss_pred             CcCHHHHhcCCC-C-eEEEEcCC
Q psy7896         416 IIRGEHFLQMRD-D-AIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~-g-AiLIN~GR  436 (718)
                      +-....+..|+. + ..+||++.
T Consensus        86 ~~~~~~~~~~~~~~~~~iv~iSs  108 (221)
T 3r6d_A           86 SDMASIVKALSRXNIRRVIGVSM  108 (221)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             hhHHHHHHHHHhcCCCeEEEEee
Confidence            222233444432 2 25666654

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.16  E-value=0.039  Score=58.24  Aligned_cols=90  Identities=17%  Similarity=0.188  Sum_probs=59.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHHH-H--hhc-------Ccee-cCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINALQ-A--SME-------GYEV-TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al~-a--~~~-------G~~v-~~Leell~~aDiIi~atgt  413 (718)
                      ...+|+|||.|.||..++..+...|  -+|.++|+++.+... +  ..+       ...+ .+..+.++.||+|+++.+.
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~   84 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGA   84 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCC
Confidence            4579999999999999999887656  489999988743211 0  011       1111 1346779999999998653


Q ss_pred             C---CC-------cC-------HHHHhcCCCCeEEEEcCC
Q psy7896         414 K---DI-------IR-------GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 ~---~l-------I~-------~e~l~~MK~gAiLIN~GR  436 (718)
                      .   +.       .|       .+.+....++++++|++-
T Consensus        85 ~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (317)
T 3d0o_A           85 AQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATN  124 (317)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            2   21       00       123444578999999764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.16  E-value=0.032  Score=60.86  Aligned_cols=35  Identities=17%  Similarity=0.177  Sum_probs=32.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.+
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~  182 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHE  182 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCC
Confidence            58999999999999999999999999999998765

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.16  E-value=0.028  Score=59.94  Aligned_cols=91  Identities=18%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC-------cee-cCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG-------YEV-TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G-------~~v-~~Leell~~aDiIi~atgt  413 (718)
                      ..++|+|||.|.||..+|..+...|.  +|.++|+++.+... +  ..++       ..+ .+-.+.++.||+|+++.|+
T Consensus         4 ~~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~   83 (326)
T 3pqe_A            4 HVNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA   83 (326)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc
Confidence            46789999999999999999977776  89999987754211 0  1222       121 1234678999999997553


Q ss_pred             ---CCC-----c--C-------HHHHhcCCCCeEEEEcCCC
Q psy7896         414 ---KDI-----I--R-------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ---~~l-----I--~-------~e~l~~MK~gAiLIN~GRg  437 (718)
                         .++     +  |       .+.+....++++++|++-.
T Consensus        84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNP  124 (326)
T 3pqe_A           84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNP  124 (326)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCh
Confidence               222     1  1       1234455788999998863

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=95.14  E-value=0.017  Score=61.32  Aligned_cols=90  Identities=18%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec-----CHHH-H---hc--cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT-----TMEE-A---AK--EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~-----~Lee-l---l~--~aDiIi~atg  412 (718)
                      -.|++|.|+|. |.||+.+++.++.+|++|+++++++.+...+...|.. +.     +..+ +   ..  ..|+++.+.|
T Consensus       169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~G  248 (351)
T 1yb5_A          169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLA  248 (351)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCH
T ss_pred             CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCCCEEEeCCCchHHHHHHHHcCCCCcEEEEECCC
Confidence            36899999998 9999999999999999999998877543333333432 11     2222 2   11  4788888876


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .. .+ ...++.++++..++.+|..
T Consensus       249 ~~-~~-~~~~~~l~~~G~iv~~g~~  271 (351)
T 1yb5_A          249 NV-NL-SKDLSLLSHGGRVIVVGSR  271 (351)
T ss_dssp             HH-HH-HHHHHHEEEEEEEEECCCC
T ss_pred             hH-HH-HHHHHhccCCCEEEEEecC
Confidence            53 22 3567888999999988853

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=95.13  E-value=0.035  Score=59.12  Aligned_cols=67  Identities=18%  Similarity=0.186  Sum_probs=50.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHH-h-CCCEEE-EEecCCccHHHH-hhcC--c-eecCHHHHhc--cCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLR-L-FGSRVI-VTEIDPINALQA-SMEG--Y-EVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~-~-fGa~Vi-v~d~dp~~al~a-~~~G--~-~v~~Leell~--~aDiIi~atgt  413 (718)
                      .-.+|||||+|.||+..++.+. . -|++++ ++|+++.++... ...|  . .+.++++++.  +.|+|++++.+
T Consensus        22 ~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   97 (357)
T 3ec7_A           22 MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASN   97 (357)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             CeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCc
Confidence            4468999999999999999887 4 477766 688888764332 2234  2 4568999987  48999998876

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=95.11  E-value=0.016  Score=61.77  Aligned_cols=91  Identities=16%  Similarity=0.224  Sum_probs=60.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH---HhhcC------cee-cCHHHHhccCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ---ASMEG------YEV-TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~---a~~~G------~~v-~~Leell~~aDiIi~atgt  413 (718)
                      ..+++|+|||.|.||+.+|..+...|.  ++.++|+++.+...   ...++      ..+ .+..+.++.||+|+++.|.
T Consensus         7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~   86 (326)
T 3vku_A            7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA   86 (326)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence            467899999999999999999876666  89999987653210   11111      121 2335789999999987542


Q ss_pred             C--------CCc--C-------HHHHhcCCCCeEEEEcCC
Q psy7896         414 K--------DII--R-------GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 ~--------~lI--~-------~e~l~~MK~gAiLIN~GR  436 (718)
                      .        .++  |       .+.+....++++++|++.
T Consensus        87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN  126 (326)
T 3vku_A           87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             C----------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred             CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence            1        122  1       123455678889999875

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=95.11  E-value=0.46  Score=47.55  Aligned_cols=39  Identities=33%  Similarity=0.413  Sum_probs=34.0

Q ss_pred             ccccCcEEEEEecC-h--hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYG-D--VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G-~--IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++.||++.|.|.+ .  ||+++|+.|...|++|++.++++.
T Consensus         3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~   44 (266)
T 3oig_A            3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGER   44 (266)
T ss_dssp             SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchH
Confidence            46789999999984 4  999999999999999999987653

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=95.10  E-value=0.015  Score=60.69  Aligned_cols=84  Identities=11%  Similarity=0.109  Sum_probs=55.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHHhhcCceecCHHHHhc--cCcEEEEcCCCCCCcCHHHHhc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQASMEGYEVTTMEEAAK--EGGIFVTTTGCKDIIRGEHFLQ  424 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~G~~v~~Leell~--~aDiIi~atgt~~lI~~e~l~~  424 (718)
                      .+|||||+|++|+..++.++.. +.+++ ++|+++.+..........+.+++++++  ++|+|++++.+.. .-.-....
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~~~-h~~~~~~a   89 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPGCVIESDWRSVVSAPEVEAVIIATPPAT-HAEITLAA   89 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTTCEEESSTHHHHTCTTCCEEEEESCGGG-HHHHHHHH
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhhCcccCCHHHHhhCCCCCEEEEeCChHH-HHHHHHHH
Confidence            5899999999999999999876 56654 788887543222112112457899985  7999999876531 11222344


Q ss_pred             CCCCe-EEEE
Q psy7896         425 MRDDA-IVCN  433 (718)
Q Consensus       425 MK~gA-iLIN  433 (718)
                      ++.|. +++.
T Consensus        90 l~~Gk~v~~e   99 (315)
T 3c1a_A           90 IASGKAVLVE   99 (315)
T ss_dssp             HHTTCEEEEE
T ss_pred             HHCCCcEEEc
Confidence            56664 5554

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=95.09  E-value=0.095  Score=57.50  Aligned_cols=35  Identities=34%  Similarity=0.405  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|++++..+
T Consensus       168 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~  202 (464)
T 2eq6_A          168 LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMP  202 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCC
Confidence            46999999999999999999999999999998765

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=95.06  E-value=0.033  Score=58.97  Aligned_cols=82  Identities=16%  Similarity=0.064  Sum_probs=54.2

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHHhhcCc-eecCHHHHhcc--CcEEEEcCCCCCCcCHHHH
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQASMEGY-EVTTMEEAAKE--GGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~G~-~v~~Leell~~--aDiIi~atgt~~lI~~e~l  422 (718)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++.+.. +...+. .+.++++++..  .|+|+++|.+.-- -.-..
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~-~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H-~~~~~   85 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH-ADWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTH-FPLAQ   85 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH-TTCSSCCEESCHHHHHHCSSCCEEEECSCTTTH-HHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH-hhCCCCceECCHHHHhcCCCCCEEEEeCChHHH-HHHHH
Confidence            58999999999997 77777766 77765 6888776543 222233 34689999975  8999998765311 11223


Q ss_pred             hcCCCCe-EEE
Q psy7896         423 LQMRDDA-IVC  432 (718)
Q Consensus       423 ~~MK~gA-iLI  432 (718)
                      ..++.|. +++
T Consensus        86 ~al~aGkhV~~   96 (352)
T 3kux_A           86 SALAAGKHVVV   96 (352)
T ss_dssp             HHHHTTCEEEE
T ss_pred             HHHHCCCcEEE
Confidence            4455554 444

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=95.05  E-value=0.034  Score=58.25  Aligned_cols=93  Identities=14%  Similarity=0.155  Sum_probs=66.6

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEE-EEEecCCccHHHHhhcCcee------cCHHHHh------ccCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRV-IVTEIDPINALQASMEGYEV------TTMEEAA------KEGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~V-iv~d~dp~~al~a~~~G~~v------~~Leell------~~aDiIi~at  411 (718)
                      ...|++|.|+|.|.+|...++.++.+|+++ ++++.++.+...+...|...      .+..+..      +..|+++.++
T Consensus       158 ~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~~~g~d~v~d~~  237 (346)
T 4a2c_A          158 GCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFGAMQTFNSSEMSAPQMQSVLRELRFNQLILETA  237 (346)
T ss_dssp             CCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHGGGCSSEEEEECS
T ss_pred             cCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcCCeEEEeCCCCCHHHHHHhhcccCCcccccccc
Confidence            347899999999999999999999999965 66777776544444455421      1233332      2368888888


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      |....++ ..++.++++..++..|...
T Consensus       238 G~~~~~~-~~~~~l~~~G~~v~~g~~~  263 (346)
T 4a2c_A          238 GVPQTVE-LAVEIAGPHAQLALVGTLH  263 (346)
T ss_dssp             CSHHHHH-HHHHHCCTTCEEEECCCCS
T ss_pred             cccchhh-hhhheecCCeEEEEEeccC
Confidence            7643333 5678899999999988653

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=95.05  E-value=0.048  Score=57.32  Aligned_cols=87  Identities=16%  Similarity=0.187  Sum_probs=57.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH---HhhcC---------cee-cCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ---ASMEG---------YEV-TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~---a~~~G---------~~v-~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||.|.+|..+|..+...|. +|.++|+++.+...   ...++         ... .+. +.++.||+|+.+.+..
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p   81 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP   81 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence            589999999999999999988886 89999988753211   11111         122 455 7789999999985432


Q ss_pred             ---CC-----------cCH---HHHhcCCCCeEEEEcCC
Q psy7896         415 ---DI-----------IRG---EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ---~l-----------I~~---e~l~~MK~gAiLIN~GR  436 (718)
                         +.           +-.   +.+....+++++++++-
T Consensus        82 ~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tN  120 (309)
T 1ur5_A           82 RKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  120 (309)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCC
Confidence               11           001   22333457889888754

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=95.04  E-value=0.027  Score=59.10  Aligned_cols=66  Identities=14%  Similarity=0.028  Sum_probs=48.9

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~atgt  413 (718)
                      -.+|||||+|.||+..++.++.. +++++ ++|+++.++... ...|.  .+.++++++.  +.|+|++++.+
T Consensus         5 ~~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   77 (329)
T 3evn_A            5 KVRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATIN   77 (329)
T ss_dssp             CEEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCG
T ss_pred             ceEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence            35899999999999999988765 55655 678887654322 22344  3568999998  78999998776

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.04  E-value=0.0055  Score=63.54  Aligned_cols=87  Identities=9%  Similarity=0.061  Sum_probs=58.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc---ee-cCHHHHh-ccCcEEEEcCCCCCCcCHHHH-
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY---EV-TTMEEAA-KEGGIFVTTTGCKDIIRGEHF-  422 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~---~v-~~Leell-~~aDiIi~atgt~~lI~~e~l-  422 (718)
                      ++|+|||.|.+|..+|..|..-|.+|+++++++.........|.   .+ .+..+.+ +.+|+|++++....+  .+.+ 
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~~~--~~~l~   80 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTHQL--DAVIP   80 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGGGH--HHHGG
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCccCH--HHHHH
Confidence            57999999999999999999889999999887643211112232   11 1233443 789999998766432  2222 


Q ss_pred             ---hcCCCCeEEEEcCCC
Q psy7896         423 ---LQMRDDAIVCNIGHF  437 (718)
Q Consensus       423 ---~~MK~gAiLIN~GRg  437 (718)
                         ..++++.+++.+.-|
T Consensus        81 ~l~~~l~~~~~iv~~~nG   98 (294)
T 3g17_A           81 HLTYLAHEDTLIILAQNG   98 (294)
T ss_dssp             GHHHHEEEEEEEEECCSS
T ss_pred             HHHHhhCCCCEEEEeccC
Confidence               234677888887665

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=95.04  E-value=0.053  Score=57.51  Aligned_cols=89  Identities=18%  Similarity=0.272  Sum_probs=60.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHH------HHh--hc--Ccee--cCHHHHhccCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINAL------QAS--ME--GYEV--TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al------~a~--~~--G~~v--~~Leell~~aDiIi~atgt~  414 (718)
                      ++|+|||.|.||+.+|..+...|.  +|.++|+++.+..      +..  ..  ...+  .+..+.+++||+|+++.|..
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~   80 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLP   80 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCC
Confidence            479999999999999998876665  8999999885421      110  01  1222  24568899999999986532


Q ss_pred             ---CC-----c--C-------HHHHhcCCCCeEEEEcCCC
Q psy7896         415 ---DI-----I--R-------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ---~l-----I--~-------~e~l~~MK~gAiLIN~GRg  437 (718)
                         ++     +  |       .+.+....++++++|++..
T Consensus        81 ~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNP  120 (314)
T 3nep_X           81 RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANP  120 (314)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSS
T ss_pred             CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCc
Confidence               22     1  1       1234556788999998863

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.01  E-value=0.038  Score=60.42  Aligned_cols=67  Identities=22%  Similarity=0.218  Sum_probs=48.9

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee---c---CHHHHhccCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV---T---TMEEAAKEGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v---~---~Leell~~aDiIi~at  411 (718)
                      -+.|++|+|+|.|.+|+.+++.++.+|.+|+++|.+|........+.+.+   .   .+.++++.+|+|+.-.
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~~~~  104 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVSTEF  104 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEEECC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEEEcc
Confidence            56899999999999999999999999999999987765432222221111   1   2445667899987533

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.00  E-value=0.01  Score=55.85  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .|+|||+|+.|+.+|..|+++|+.|+|+|..+.
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            489999999999999999999999999998654

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=95.00  E-value=0.022  Score=59.53  Aligned_cols=84  Identities=7%  Similarity=0.024  Sum_probs=54.5

Q ss_pred             cEEEEEecChhHH-HHHHHHHhC-CCEEEEEecCCccHHHH-hhcCce--ecCHHHHh-ccCcEEEEcCCCCCCcCHHHH
Q psy7896         349 KVAVVAGYGDVGK-GCAQSLRLF-GSRVIVTEIDPINALQA-SMEGYE--VTTMEEAA-KEGGIFVTTTGCKDIIRGEHF  422 (718)
Q Consensus       349 ktVGIIG~G~IG~-~vA~~l~~f-Ga~Viv~d~dp~~al~a-~~~G~~--v~~Leell-~~aDiIi~atgt~~lI~~e~l  422 (718)
                      .+|||||+|+||+ ..++.++.. +.+|+++|+++.+.... ...|..  +.+..+++ .+.|+|++++.+.- --.-..
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~-h~~~~~   81 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDV-HSTLAA   81 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGG-HHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchh-HHHHHH
Confidence            4799999999998 488888765 77877998887654322 223443  34445565 68999999887531 111222


Q ss_pred             hcCCCCe-EEEE
Q psy7896         423 LQMRDDA-IVCN  433 (718)
Q Consensus       423 ~~MK~gA-iLIN  433 (718)
                      ..++.|. +++.
T Consensus        82 ~al~~Gk~V~~E   93 (323)
T 1xea_A           82 FFLHLGIPTFVD   93 (323)
T ss_dssp             HHHHTTCCEEEE
T ss_pred             HHHHCCCeEEEe
Confidence            4455554 5554

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=94.99  E-value=0.025  Score=59.94  Aligned_cols=89  Identities=19%  Similarity=0.164  Sum_probs=63.0

Q ss_pred             cC-cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc----HHHHhhcCce-ecCH--------HHHh--------cc
Q psy7896         347 AG-KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN----ALQASMEGYE-VTTM--------EEAA--------KE  403 (718)
Q Consensus       347 ~G-ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~----al~a~~~G~~-v~~L--------eell--------~~  403 (718)
                      .| ++|.|+|. |.||..+++.++.+|++|+++..++.+    ...+...|.. +.+.        .+.+        ..
T Consensus       166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~i~~~t~~~~~g  245 (364)
T 1gu7_A          166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE  245 (364)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred             CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCeEEEecCccchHHHHHHHHHHhhccCCC
Confidence            57 99999998 999999999999999998887654432    1122233532 2221        1122        24


Q ss_pred             CcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         404 GGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       404 aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .|+++-++|.....  ..++.++++..++.+|..
T Consensus       246 ~Dvvid~~G~~~~~--~~~~~l~~~G~~v~~g~~  277 (364)
T 1gu7_A          246 AKLALNCVGGKSST--GIARKLNNNGLMLTYGGM  277 (364)
T ss_dssp             EEEEEESSCHHHHH--HHHHTSCTTCEEEECCCC
T ss_pred             ceEEEECCCchhHH--HHHHHhccCCEEEEecCC
Confidence            79999998865443  568899999999999863

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=94.98  E-value=0.033  Score=58.72  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=49.2

Q ss_pred             cEEEEEecChhHHHHHHHHH-h-CCCEEE-EEecCCccHHHH-hhcC--c-eecCHHHHhcc--CcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLR-L-FGSRVI-VTEIDPINALQA-SMEG--Y-EVTTMEEAAKE--GGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~-~-fGa~Vi-v~d~dp~~al~a-~~~G--~-~v~~Leell~~--aDiIi~atgt  413 (718)
                      .+|||||+|.||+..++.++ . -+++++ ++|+++.+.... ...|  . .+.++++++++  .|+|++++.+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~   76 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWG   76 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCG
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCc
Confidence            47999999999999999888 5 477766 688887654332 2334  2 35689999976  8999998765

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=94.96  E-value=0.031  Score=59.19  Aligned_cols=88  Identities=16%  Similarity=0.185  Sum_probs=57.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------cee-cCHHHHhccCcEEEEcCCCC--
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YEV-TTMEEAAKEGGIFVTTTGCK--  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~v-~~Leell~~aDiIi~atgt~--  414 (718)
                      .+|+|||.|.||..++..+...+.  ++.++|+++.+... +  ..++      ..+ .+..+.++.||||+++.+..  
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~~   85 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQK   85 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            689999999999999998876555  89999998754321 1  1111      111 23467799999999975532  


Q ss_pred             -CC-------cC-------HHHHhcCCCCeEEEEcCC
Q psy7896         415 -DI-------IR-------GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 -~l-------I~-------~e~l~~MK~gAiLIN~GR  436 (718)
                       ++       .|       .+.+....++++++|++-
T Consensus        86 ~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  122 (318)
T 1ez4_A           86 PGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (318)
T ss_dssp             -------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence             11       11       123444578999999744

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=94.95  E-value=0.049  Score=60.11  Aligned_cols=35  Identities=23%  Similarity=0.085  Sum_probs=31.2

Q ss_pred             CcEEEEEecCCCChhHHHHHHh-c------CCeEEEeecCch
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRL-F------GSRVIVTEIDPI  303 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra-~------Gv~VtV~D~dp~  303 (718)
                      .++|+|||.|+.|..+|..|++ .      |+.|+++|..+.
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~   44 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   44 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCC
Confidence            3689999999999999999998 7      999999997753

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.95  E-value=0.066  Score=56.60  Aligned_cols=89  Identities=13%  Similarity=0.229  Sum_probs=56.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHH---HHhhcCc------eec-CHHHHhccCcEEEEcCCCC-
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINAL---QASMEGY------EVT-TMEEAAKEGGIFVTTTGCK-  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al---~a~~~G~------~v~-~Leell~~aDiIi~atgt~-  414 (718)
                      ..+|+|||.|.||..++..+...|.  +|.++|+++.+..   ....++.      .+. +-.+.++.||+|+++.++. 
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~   86 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANR   86 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence            4689999999999999999987777  9999999874321   1112221      121 2256789999999986642 


Q ss_pred             --CC-------cC----H---HHHhcCCCCeEEEEcCC
Q psy7896         415 --DI-------IR----G---EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 --~l-------I~----~---e~l~~MK~gAiLIN~GR  436 (718)
                        ++       .|    .   +.+....++++++|++-
T Consensus        87 k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tN  124 (318)
T 1y6j_A           87 KPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN  124 (318)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred             CCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecC
Confidence              21       00    1   12333368999999744

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.95  E-value=0.025  Score=59.42  Aligned_cols=100  Identities=11%  Similarity=0.137  Sum_probs=66.0

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--------CHHHH-hccCcEEEEcCCCC--CC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--------TMEEA-AKEGGIFVTTTGCK--DI  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--------~Leel-l~~aDiIi~atgt~--~l  416 (718)
                      .+++.|+|+|++|+.+++.|...|. |+++|.||.... ....|+.+.        .++++ ++++|.++.++++.  ++
T Consensus       115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~  192 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETI  192 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHH
T ss_pred             cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHH
Confidence            5689999999999999999999999 999999987544 334555432        23444 67889988887642  33


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhcccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAV  451 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l  451 (718)
                      ........+.+...++--.+.  +-..+.|...+.
T Consensus       193 ~~~~~ar~~~~~~~iiar~~~--~~~~~~l~~~G~  225 (336)
T 1lnq_A          193 HCILGIRKIDESVRIIAEAER--YENIEQLRMAGA  225 (336)
T ss_dssp             HHHHHHHTTCTTSEEEEECSS--GGGHHHHHHTTC
T ss_pred             HHHHHHHHHCCCCeEEEEECC--HHHHHHHHHcCC
Confidence            444556677776555443332  233345554443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=94.94  E-value=0.034  Score=59.06  Aligned_cols=68  Identities=13%  Similarity=-0.043  Sum_probs=50.8

Q ss_pred             cCcEEEEEecChhHH-HHHHHHHhC-CCEEE-EEecCCccHHHH-hhcCce-ecCHHHHhc--cCcEEEEcCCCC
Q psy7896         347 AGKVAVVAGYGDVGK-GCAQSLRLF-GSRVI-VTEIDPINALQA-SMEGYE-VTTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       347 ~GktVGIIG~G~IG~-~vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~~-v~~Leell~--~aDiIi~atgt~  414 (718)
                      +-.+|||||+|.||+ ..++.++.. |++|+ ++|+++.++... ...|.. +.++++++.  +.|+|++++.+.
T Consensus        26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~  100 (350)
T 3rc1_A           26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAV  100 (350)
T ss_dssp             CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGG
T ss_pred             CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcH
Confidence            447899999999998 788888877 77876 688887654332 223543 468999996  589999987763

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=94.92  E-value=0.043  Score=52.02  Aligned_cols=66  Identities=15%  Similarity=0.102  Sum_probs=45.8

Q ss_pred             CcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------cCHHHHhccCcEEEEcCCC
Q psy7896         348 GKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------~~Leell~~aDiIi~atgt  413 (718)
                      +++|.|.|. |.||+.+++.|...|.+|++.++++.........++.+        .++.++++.+|+|+.+.+.
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~   77 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccC
Confidence            489999998 99999999999999999999988764321110122221        1244566777877766543

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=94.88  E-value=0.027  Score=60.05  Aligned_cols=89  Identities=19%  Similarity=0.155  Sum_probs=65.1

Q ss_pred             cCcEEEEEe-cChhHHHHHHHHHh-CCCEEEEEecCCccHHHHhhcCcee-c----CHHHHhc-----cCcEEEEcCCCC
Q psy7896         347 AGKVAVVAG-YGDVGKGCAQSLRL-FGSRVIVTEIDPINALQASMEGYEV-T----TMEEAAK-----EGGIFVTTTGCK  414 (718)
Q Consensus       347 ~GktVGIIG-~G~IG~~vA~~l~~-fGa~Viv~d~dp~~al~a~~~G~~v-~----~Leell~-----~aDiIi~atgt~  414 (718)
                      .|++|.|+| .|.||..+++.++. .|++|++++.++.+...+...|... .    ++.+.++     ..|+++.++|..
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGad~vi~~~~~~~~~v~~~~~~g~Dvvid~~g~~  250 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGAHHVIDHSKPLAAEVAALGLGAPAFVFSTTHTD  250 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTCSEEECTTSCHHHHHHTTCSCCEEEEEECSCHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHhcCCCceEEEECCCch
Confidence            689999999 99999999999998 5999999988776543344445431 1    2333332     478888888764


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      ..+ ...++.++++..++.+|.
T Consensus       251 ~~~-~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          251 KHA-AEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             HHH-HHHHHHSCTTCEEEECSC
T ss_pred             hhH-HHHHHHhcCCCEEEEECC
Confidence            333 356788999999998864

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=94.85  E-value=0.058  Score=57.59  Aligned_cols=76  Identities=21%  Similarity=0.214  Sum_probs=52.6

Q ss_pred             CccceEEEecCCcccccccccccchhhHHHHHh---------------hhcccccCCcEEEEEecCCCChhHHHHHHhcC
Q psy7896         228 KLGVPAINVNDSVTKSKFDNLYGCRESLVDGLK---------------RATDIMLAGKVAVVAGYGDVGKGCAQSLRLFG  292 (718)
Q Consensus       228 ~l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~---------------r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~G  292 (718)
                      +.+++|.|+.+.......|...+.-=++.+.+.               ...+..+.|+++.|+|+|.+|+.+|+.++.+|
T Consensus        85 ~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg  164 (334)
T 3kb6_A           85 KKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFG  164 (334)
T ss_dssp             HHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTT
T ss_pred             HCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccccccceecCcEEEEECcchHHHHHHHhhcccC
Confidence            346788888877776666655442111111110               11124578999999999999999999999999


Q ss_pred             CeEEEeecCch
Q psy7896         293 SRVIVTEIDPI  303 (718)
Q Consensus       293 v~VtV~D~dp~  303 (718)
                      .+|..+|..+.
T Consensus       165 ~~v~~~d~~~~  175 (334)
T 3kb6_A          165 MKVLCYDVVKR  175 (334)
T ss_dssp             CEEEEECSSCC
T ss_pred             ceeeecCCccc
Confidence            99999885443

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=94.85  E-value=0.042  Score=59.05  Aligned_cols=39  Identities=18%  Similarity=0.315  Sum_probs=35.8

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      .+.|+++.|+|+|.+|..+|+.|+++|.+|+++|..+..
T Consensus       145 ~l~gktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~~~  183 (343)
T 2yq5_A          145 EIYNLTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAYNP  183 (343)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCG
T ss_pred             ccCCCeEEEEecCHHHHHHHHHHhhCCCEEEEECCChhh
Confidence            478999999999999999999999999999999987653

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.84  E-value=0.045  Score=60.87  Aligned_cols=66  Identities=26%  Similarity=0.296  Sum_probs=50.2

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-------------------HHhhcC-ce-ecCHHHHhccCcE
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-------------------QASMEG-YE-VTTMEEAAKEGGI  406 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-------------------~a~~~G-~~-v~~Leell~~aDi  406 (718)
                      =++|+|||+|-||..+|..+...|.+|+++|+|+.+-.                   +....| .. ..+.+++++.+|+
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~  100 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA  100 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence            36899999999999999999999999999999875411                   011222 22 2467888999999


Q ss_pred             EEEcCCC
Q psy7896         407 FVTTTGC  413 (718)
Q Consensus       407 Ii~atgt  413 (718)
                      ++++-+|
T Consensus       101 ~~I~VpT  107 (444)
T 3vtf_A          101 TFIAVGT  107 (444)
T ss_dssp             EEECCCC
T ss_pred             eEEEecC
Confidence            9987444

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=94.82  E-value=0.042  Score=63.41  Aligned_cols=109  Identities=22%  Similarity=0.156  Sum_probs=67.5

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh----hhhhhhhhHHH---HHHHHHHhccccccc------
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA----SMEGYELDEEV---AALHLEHLGVKLTKL------  334 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A----vaeGf~L~r~i---~~~~l~~lgv~~~~~------  334 (718)
                      ..++++|||.|+.|..+|..|+++|.+|+++|..+...-+.    ...+.....+.   ....+...++++...      
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~~  451 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTAD  451 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCCSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEecHH
Confidence            46799999999999999999999999999999865331111    11111110110   111222333332100      


Q ss_pred             --------------chhhh--------------hh-hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEE
Q psy7896         335 --------------TEDQA--------------KY-LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV  376 (718)
Q Consensus       335 --------------~~~~~--------------~~-~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv  376 (718)
                                    .+...              .. ......+++|.|||.|.+|..+|..|..+|.+|++
T Consensus       452 ~~~~~d~lviAtG~~p~~~~i~G~~~~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv  522 (671)
T 1ps9_A          452 QLQAFDETILASGIVPRTPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ  522 (671)
T ss_dssp             SSCCSSEEEECCCEEECCCCCBTTTSTTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGGG
T ss_pred             HhhcCCEEEEccCCCcCCCCCCCCCCCcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCCccc
Confidence                          00000              00 01234689999999999999999999999987653

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=94.82  E-value=0.11  Score=54.65  Aligned_cols=132  Identities=14%  Similarity=0.068  Sum_probs=85.8

Q ss_pred             cchhhHHHHHhhhcccccCCcEEEEEe-cCCCChhHHH-HHHhcCCeEEE-eecCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy7896         250 GCRESLVDGLKRATDIMLAGKVAVVAG-YGDVGKGCAQ-SLRLFGSRVIV-TEIDPINALQASMEGYELDEEVAALHLEH  326 (718)
Q Consensus       250 G~~es~~~~i~r~t~~~~~Gk~vvViG-yG~vG~~~A~-aLra~Gv~VtV-~D~dp~r~v~AvaeGf~L~r~i~~~~l~~  326 (718)
                      |-+||+.|...--.   .-+-.+.|+. +..--.  .. .++-.+++|++ -+.+...=.|+.++-|.+-+         
T Consensus        74 ~kgEsl~DTarvls---~~~~D~iviR~~~~~~~--~~~la~~~~vPVINAG~g~~~HPtQaLaDl~Ti~e---------  139 (291)
T 3d6n_B           74 VKGESFFDTLKTFE---GLGFDYVVFRVPFVFFP--YKEIVKSLNLRLVNAGDGTHQHPSQGLIDFFTIKE---------  139 (291)
T ss_dssp             CTTCCHHHHHHHHH---HTTCSEEEEEESSCCCS--CHHHHHTCSSEEEEEEETTTBCHHHHHHHHHHHHH---------
T ss_pred             cCCCcHHHHHHHHH---HhcCCEEEEEcCChHHH--HHHHHHhCCCCEEeCccCCCcCcHHHHHHHHHHHH---------
Confidence            56788877655311   1221233343 322222  22 34556789998 67777777788777766532         


Q ss_pred             hcccccccchhhhhhhcccccCcEEEEEec---ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhc
Q psy7896         327 LGVKLTKLTEDQAKYLDIMLAGKVAVVAGY---GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAK  402 (718)
Q Consensus       327 lgv~~~~~~~~~~~~~g~eL~GktVGIIG~---G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~  402 (718)
                                    ..| .+.|++|++||-   +++.+..+..+..||++|.++-+...........|+. ..+++|+++
T Consensus       140 --------------~~g-~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~g~~~~~d~~eav~  204 (291)
T 3d6n_B          140 --------------HFG-EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRDVEVFKVDVFDDVDKGID  204 (291)
T ss_dssp             --------------HHS-CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTTGGGGCEEEESSHHHHHH
T ss_pred             --------------HhC-CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCchHHHCCCEEEcCHHHHhC
Confidence                          112 588999999997   8999999999999999999985422211111123554 467999999


Q ss_pred             cCcEEEEc
Q psy7896         403 EGGIFVTT  410 (718)
Q Consensus       403 ~aDiIi~a  410 (718)
                      ++|+|.++
T Consensus       205 ~aDvvy~~  212 (291)
T 3d6n_B          205 WADVVIWL  212 (291)
T ss_dssp             HCSEEEEC
T ss_pred             CCCEEEEe
Confidence            99999983

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=94.80  E-value=0.028  Score=58.27  Aligned_cols=65  Identities=17%  Similarity=0.297  Sum_probs=47.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHh-hcCceec-CHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQAS-MEGYEVT-TMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~-~~G~~v~-~Leell~~aDiIi~atgt  413 (718)
                      .++++.|+|.|..|+.++..|...|+ +|+++++++.++.+.. ..+..+. ++.  +.++|+||.+|..
T Consensus       118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~  185 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSI  185 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSST
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCC
Confidence            57899999999999999999999998 7999998876543211 1132322 222  4578888887654

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=94.80  E-value=0.045  Score=62.06  Aligned_cols=35  Identities=23%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      -+++.|||.|.||..+|..+++||.+|++..+++.
T Consensus       223 P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~  257 (542)
T 4b1b_A          223 PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIV  257 (542)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCS
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCeEEEeccccc
Confidence            38899999999999999999999999999876543

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=94.79  E-value=0.017  Score=63.66  Aligned_cols=90  Identities=18%  Similarity=0.189  Sum_probs=64.1

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-c---C-----------------------H
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-T---T-----------------------M  397 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~---~-----------------------L  397 (718)
                      -.|++|.|+|. |.||...++.++.+|++|++++.++.+...+...|... .   +                       +
T Consensus       227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa~~vi~~~~~d~~~~~~~~~~~~~~~~~~~~~i  306 (456)
T 3krt_A          227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRI  306 (456)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCCEEEETTTTTCCSEEETTEECHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCcEEEecCcCcccccccccccchHHHHHHHHHH
Confidence            46899999998 99999999999999999999887665543333344321 1   0                       1


Q ss_pred             HHHh--ccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         398 EEAA--KEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       398 eell--~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .++.  +..|+++-++|.. . -...+..++++..++.+|..
T Consensus       307 ~~~t~g~g~Dvvid~~G~~-~-~~~~~~~l~~~G~iv~~G~~  346 (456)
T 3krt_A          307 RELTGGEDIDIVFEHPGRE-T-FGASVFVTRKGGTITTCAST  346 (456)
T ss_dssp             HHHHTSCCEEEEEECSCHH-H-HHHHHHHEEEEEEEEESCCT
T ss_pred             HHHhCCCCCcEEEEcCCch-h-HHHHHHHhhCCcEEEEEecC
Confidence            1122  2578888887762 2 23567888999999998753

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=94.78  E-value=0.036  Score=58.51  Aligned_cols=90  Identities=19%  Similarity=0.146  Sum_probs=64.7

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec----CHHHHh------ccCcEEEEcCCCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT----TMEEAA------KEGGIFVTTTGCK  414 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~----~Leell------~~aDiIi~atgt~  414 (718)
                      -.|++|.|+| .|.||..+++.++.+|++|+++ .++.+...+...|....    ++.+.+      +..|+++.++|..
T Consensus       149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~lGa~~i~~~~~~~~~~~~~~~~~g~D~vid~~g~~  227 (343)
T 3gaz_A          149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRDLGATPIDASREPEDYAAEHTAGQGFDLVYDTLGGP  227 (343)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHHHTSEEEETTSCHHHHHHHHHTTSCEEEEEESSCTH
T ss_pred             CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHHcCCCEeccCCCHHHHHHHHhcCCCceEEEECCCcH
Confidence            3689999999 7999999999999999999998 66554333333344321    233322      2579999888752


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                        .-...++.|+++..++.+|...
T Consensus       228 --~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          228 --VLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             --HHHHHHHHEEEEEEEEESCCCS
T ss_pred             --HHHHHHHHHhcCCeEEEEcccC
Confidence              2345678899999999988654

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=94.75  E-value=0.027  Score=59.00  Aligned_cols=80  Identities=15%  Similarity=0.271  Sum_probs=49.7

Q ss_pred             cEEEEEecChhHHHHHHHHHh-CCCEEE-EEecCCccHHHHhhcCce---ecCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRL-FGSRVI-VTEIDPINALQASMEGYE---VTTMEEAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~-fGa~Vi-v~d~dp~~al~a~~~G~~---v~~Leell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      .+|||||+|+||+.+++.++. -++++. ++|++|.+...   .|..   +.++.+. .+.|+|+.++++..- -+-...
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h-~~~~~~   84 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREV-ERTALE   84 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHH-HHHHHH
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhh-HHHHHH
Confidence            589999999999999999876 467877 68888765422   3433   3344444 689999999875311 112234


Q ss_pred             cCCCCeEEEE
Q psy7896         424 QMRDDAIVCN  433 (718)
Q Consensus       424 ~MK~gAiLIN  433 (718)
                      .++.|.-++.
T Consensus        85 al~aG~~Vi~   94 (304)
T 3bio_A           85 ILKKGICTAD   94 (304)
T ss_dssp             HHTTTCEEEE
T ss_pred             HHHcCCeEEE
Confidence            5566665554

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.73  E-value=0.097  Score=58.08  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=71.5

Q ss_pred             hcccccCcEEEEEecC----------hhHHHHHHHHHhCCCEEEEEecCCccHHHHh--hcCcee-cCHHHHhccCcEEE
Q psy7896         342 LDIMLAGKVAVVAGYG----------DVGKGCAQSLRLFGSRVIVTEIDPINALQAS--MEGYEV-TTMEEAAKEGGIFV  408 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G----------~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~--~~G~~v-~~Leell~~aDiIi  408 (718)
                      ++..+.|++|+|+|+-          .-...+++.|...|++|.+||  |....++.  ..+..+ .+++++++.+|.++
T Consensus       316 l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~D--P~~~~~~~~~~~~~~~~~~~~~~~~~ad~vv  393 (446)
T 4a7p_A          316 MGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYD--PEGVEQASKMLTDVEFVENPYAAADGADALV  393 (446)
T ss_dssp             TTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEEC--SSCHHHHGGGCSSCCBCSCHHHHHTTBSEEE
T ss_pred             hcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEEC--CCCCHhHHHhcCCceEecChhHHhcCCCEEE
Confidence            3567899999999987          458999999999999999995  44322221  124443 47889999999999


Q ss_pred             EcCCCCCC--cCHHHHh-cCCCCeEEEEcCCCCccccHHHHhccc
Q psy7896         409 TTTGCKDI--IRGEHFL-QMRDDAIVCNIGHFDCEIQVSWLDKNA  450 (718)
Q Consensus       409 ~atgt~~l--I~~e~l~-~MK~gAiLIN~GRgd~Eid~~aL~~~~  450 (718)
                      ++|.....  ++-+.+. .|+. .++++ +|.  -.+.+.+++.+
T Consensus       394 i~t~~~~f~~~d~~~~~~~~~~-~~i~D-~r~--~~~~~~~~~~g  434 (446)
T 4a7p_A          394 IVTEWDAFRALDLTRIKNSLKS-PVLVD-LRN--IYPPAELERAG  434 (446)
T ss_dssp             ECSCCTTTTSCCHHHHHTTBSS-CBEEC-SSC--CSCHHHHHHTT
T ss_pred             EeeCCHHhhcCCHHHHHHhcCC-CEEEE-CCC--CCCHHHHHhcC
Confidence            98876543  5666664 4554 56776 442  35555555543

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=94.72  E-value=0.061  Score=56.00  Aligned_cols=84  Identities=8%  Similarity=-0.028  Sum_probs=55.6

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHH-hhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHHh
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQA-SMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHFL  423 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l~  423 (718)
                      .+|||||+|.||+. +++.+... |++++ ++|+++.+.... ...|.. +.+.+++..+.|+|++++.+. .--.-...
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~-~h~~~~~~   84 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTA-SHFDVVST   84 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTT-HHHHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCch-hHHHHHHH
Confidence            58999999999996 88877654 67766 788888654332 222443 346777767899999988763 11122234


Q ss_pred             cCCCCe-EEEE
Q psy7896         424 QMRDDA-IVCN  433 (718)
Q Consensus       424 ~MK~gA-iLIN  433 (718)
                      .++.|. +++.
T Consensus        85 al~~G~~v~~e   95 (319)
T 1tlt_A           85 LLNAGVHVCVD   95 (319)
T ss_dssp             HHHTTCEEEEE
T ss_pred             HHHcCCeEEEe
Confidence            456665 5554

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=94.70  E-value=0.038  Score=58.85  Aligned_cols=64  Identities=17%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHHhhcCce-ecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQASMEGYE-VTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~G~~-v~~Leell~--~aDiIi~atgt  413 (718)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++.+..+ ...+.. +.++++++.  +.|+|+++|.+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTEEVKR-DFPDAEVVHELEEITNDPAIELVIVTTPS   75 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHHHHHH-HCTTSEEESSTHHHHTCTTCCEEEECSCT
T ss_pred             ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEcCCc
Confidence            58999999999997 67777766 77765 57887754222 222333 568999997  68999998876

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=94.68  E-value=0.024  Score=57.97  Aligned_cols=37  Identities=22%  Similarity=0.328  Sum_probs=33.8

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP  381 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp  381 (718)
                      .|++++|.|||.|.+|..+++.|...|. +++++|.|.
T Consensus        25 ~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~   62 (251)
T 1zud_1           25 KLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDD   62 (251)
T ss_dssp             HHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCB
T ss_pred             HHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            4789999999999999999999999998 788988775

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=94.66  E-value=0.041  Score=58.66  Aligned_cols=66  Identities=12%  Similarity=-0.001  Sum_probs=48.9

Q ss_pred             CcEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHHhhc--Cc-eecCHHHHhcc--CcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQASME--GY-EVTTMEEAAKE--GGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~--G~-~v~~Leell~~--aDiIi~atgt  413 (718)
                      -.+|||||+|.||+. .++.++.. +++++ ++|+++.++......  +. .+.++++++.+  .|+|++++.+
T Consensus         5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   78 (359)
T 3m2t_A            5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPP   78 (359)
T ss_dssp             CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCH
T ss_pred             cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCc
Confidence            468999999999995 78888776 77876 788888654332221  22 35689999975  4999998765

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=94.66  E-value=0.037  Score=58.87  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------cee-cCHHHHhccCcEEEEcCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YEV-TTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~v-~~Leell~~aDiIi~atgt~  414 (718)
                      ..++|+|||.|.||..++..+...+.  ++.++|+++.+... +  ..++      ..+ .+..+.++.||+|+++.+..
T Consensus         8 ~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~   87 (326)
T 2zqz_A            8 DHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP   87 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC
Confidence            34789999999999999998865554  89999998754311 1  1222      111 23467799999999986532


Q ss_pred             ---CC-------cCH-------HHHhcCCCCeEEEEcCC
Q psy7896         415 ---DI-------IRG-------EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 ---~l-------I~~-------e~l~~MK~gAiLIN~GR  436 (718)
                         ++       .|.       +.+.+..++++++|++-
T Consensus        88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  126 (326)
T 2zqz_A           88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN  126 (326)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence               21       111       22333468999999744

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=94.65  E-value=0.042  Score=58.83  Aligned_cols=90  Identities=13%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhcC------ce---ecCHHHHhccCcEEEEcCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SMEG------YE---VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~G------~~---v~~Leell~~aDiIi~atg  412 (718)
                      ..++|+|||.|.||..+|..+...|.  +|.++|+++.+... +  ..++      ..   ..+.++ +++||+|+++.|
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG   98 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG   98 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence            56899999999999999999977776  89999987643211 0  0111      11   224555 899999998754


Q ss_pred             CC---C-----CcC---------HHHHhcCCCCeEEEEcCCC
Q psy7896         413 CK---D-----IIR---------GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~---~-----lI~---------~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..   +     ++.         .+.+....++++++|++-.
T Consensus        99 ~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtNP  140 (330)
T 3ldh_A           99 ARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPEL  140 (330)
T ss_dssp             CCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             CCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCCc
Confidence            31   2     111         1234455889999998863

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.63  E-value=0.071  Score=56.19  Aligned_cols=65  Identities=17%  Similarity=0.090  Sum_probs=47.1

Q ss_pred             CcEEEEEecChhHHH-HHHHHHhCCCEEEEEecCCccH-H-HHhhcCceec---CHHHHh-ccCcEEEEcCC
Q psy7896         348 GKVAVVAGYGDVGKG-CAQSLRLFGSRVIVTEIDPINA-L-QASMEGYEVT---TMEEAA-KEGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG~G~IG~~-vA~~l~~fGa~Viv~d~dp~~a-l-~a~~~G~~v~---~Leell-~~aDiIi~atg  412 (718)
                      .|+|.|||.|.+|+. +|+.|+..|++|+++|..+... . +....|..+.   +.+++. .++|+||..++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Spg   75 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGNV   75 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECTT
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECCC
Confidence            578999999999995 9999999999999999765321 1 1123465543   334444 47899998654

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=94.60  E-value=0.083  Score=58.54  Aligned_cols=36  Identities=22%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhC---CCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLF---GSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~f---Ga~Viv~d~dp~  382 (718)
                      .++++.|||.|.||..+|..++.+   |.+|+++++.+.
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  224 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM  224 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCC
Confidence            368999999999999999999999   999999987653

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=94.52  E-value=0.037  Score=57.65  Aligned_cols=88  Identities=19%  Similarity=0.148  Sum_probs=61.3

Q ss_pred             Cc-EEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e---cCH-HHHh-----ccCcEEEEcCCCCC
Q psy7896         348 GK-VAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V---TTM-EEAA-----KEGGIFVTTTGCKD  415 (718)
Q Consensus       348 Gk-tVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v---~~L-eell-----~~aDiIi~atgt~~  415 (718)
                      |+ +|.|+|. |.||..+++.++.+|++|++++.++.+...+...|.. +   .+. .+.+     ...|+++.++|.. 
T Consensus       149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~d~vid~~g~~-  227 (328)
T 1xa0_A          149 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPVGGR-  227 (328)
T ss_dssp             GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECSTTT-
T ss_pred             CCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcEEEecCCcHHHHHHHhcCCcccEEEECCcHH-
Confidence            54 8999998 9999999999999999999998876654333334532 1   111 1111     1368888887763 


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      . -...++.++++..++.+|..
T Consensus       228 ~-~~~~~~~l~~~G~~v~~G~~  248 (328)
T 1xa0_A          228 T-LATVLSRMRYGGAVAVSGLT  248 (328)
T ss_dssp             T-HHHHHHTEEEEEEEEECSCC
T ss_pred             H-HHHHHHhhccCCEEEEEeec
Confidence            2 34667888999999988764

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.47  E-value=0.08  Score=54.62  Aligned_cols=39  Identities=23%  Similarity=0.416  Sum_probs=35.2

Q ss_pred             ccccCcEEEEEecC---hhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYG---DVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G---~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+.||++.|.|.+   .||+++|+.|...|++|++.++++.
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChH
Confidence            46899999999986   8999999999999999999988753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.43  E-value=0.038  Score=50.76  Aligned_cols=39  Identities=23%  Similarity=0.285  Sum_probs=35.1

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ  307 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~  307 (718)
                      .++++|+|+|.+|..+++.|++.|+.|+++|.++.+...
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~   45 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDE   45 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHH
Confidence            468999999999999999999999999999999987533

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=94.42  E-value=0.5  Score=50.79  Aligned_cols=84  Identities=13%  Similarity=0.103  Sum_probs=60.9

Q ss_pred             HHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccc
Q psy7896         362 GCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEI  441 (718)
Q Consensus       362 ~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Ei  441 (718)
                      .+.+.++..|.+|++++.....          ...+.+.++++|++++......-++++.++++++=-++...|-|-+-+
T Consensus        31 ~~~~~L~~~g~ev~~~~~~~~~----------~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~p~Lk~i~~~g~G~d~i  100 (351)
T 3jtm_A           31 GIRDWLESQGHQYIVTDDKEGP----------DCELEKHIPDLHVLISTPFHPAYVTAERIKKAKNLKLLLTAGIGSDHI  100 (351)
T ss_dssp             GCHHHHHHTTCEEEEESCCSST----------TSHHHHHTTTCSEEEECTTSCCCBCHHHHHHCSSCCEEEESSSCCTTB
T ss_pred             HHHHHHHHCCCEEEEeCCCCCC----------HHHHHHHhCCCEEEEEccCCCCCCCHHHHhhCCCCeEEEEeCeeeccc
Confidence            3457889999999987532211          013667788999998765444568999999998878888888886679


Q ss_pred             cHHHHhccccceee
Q psy7896         442 QVSWLDKNAVEKVN  455 (718)
Q Consensus       442 d~~aL~~~~l~~~~  455 (718)
                      |+++..+.++.+..
T Consensus       101 d~~~a~~~gI~V~n  114 (351)
T 3jtm_A          101 DLQAAAAAGLTVAE  114 (351)
T ss_dssp             CHHHHHHTTCEEEE
T ss_pred             CHHHHHhcCeeEEE
Confidence            99888776654443

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=94.40  E-value=0.022  Score=59.27  Aligned_cols=87  Identities=22%  Similarity=0.199  Sum_probs=62.1

Q ss_pred             CcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHH------Hh-ccCcEEEEcCCCCCCcC
Q psy7896         348 GKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEE------AA-KEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       348 GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Lee------ll-~~aDiIi~atgt~~lI~  418 (718)
                      |+ |.|+|. |.||..+++.++.+|++|++++.++.+...+...|.. +.+..+      +. ...|+++-+.|..  .-
T Consensus       148 g~-VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~d~v~d~~g~~--~~  224 (324)
T 3nx4_A          148 GE-VVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDTVGDK--VL  224 (324)
T ss_dssp             CC-EEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTCSEEEEGGGSSCCCSSCCCCEEEEEESSCHH--HH
T ss_pred             Ce-EEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecCCHHHHHhhcCCCccEEEECCCcH--HH
Confidence            45 999998 9999999999999999999998877664444334432 111111      11 2457887777754  33


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...++.++++..++.+|..
T Consensus       225 ~~~~~~l~~~G~iv~~G~~  243 (324)
T 3nx4_A          225 AKVLAQMNYGGCVAACGLA  243 (324)
T ss_dssp             HHHHHTEEEEEEEEECCCT
T ss_pred             HHHHHHHhcCCEEEEEecC
Confidence            4667889999999999865

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=94.38  E-value=0.038  Score=58.82  Aligned_cols=64  Identities=14%  Similarity=0.065  Sum_probs=47.2

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHHhhcCc-eecCHHHHhcc--CcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQASMEGY-EVTTMEEAAKE--GGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~G~-~v~~Leell~~--aDiIi~atgt  413 (718)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++.+..+ ...+. .+.++++++..  .|+|+++|.+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~   75 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELSKE-RYPQASIVRSFKELTEDPEIDLIVVNTPD   75 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGGGT-TCTTSEEESCSHHHHTCTTCCEEEECSCG
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHH-hCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence            58999999999997 67777666 77765 67888765321 11133 35689999976  8999998776

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=94.36  E-value=0.034  Score=59.10  Aligned_cols=89  Identities=16%  Similarity=0.174  Sum_probs=60.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhC-CCEEEEEecCCccHHHHhhcCce-ecC----HHH----Hhc--cCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDPINALQASMEGYE-VTT----MEE----AAK--EGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~f-Ga~Viv~d~dp~~al~a~~~G~~-v~~----Lee----ll~--~aDiIi~atgt  413 (718)
                      -.|++|.|+|.|.||..+++.++.+ |++|++++.++.+...+...|.. +.+    +.+    +..  ..|+++-++|.
T Consensus       185 ~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~v~~~~~g~g~Dvvid~~G~  264 (359)
T 1h2b_A          185 YPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGS  264 (359)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhCCCEEEeccchHHHHHHHHhCCCCCcEEEECCCC
Confidence            3689999999999999999999999 99999998877654334444542 111    222    221  46888888776


Q ss_pred             CC--CcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KD--IIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~--lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..  .+. ..++.  ++..++.+|..
T Consensus       265 ~~~~~~~-~~~~~--~~G~~v~~g~~  287 (359)
T 1h2b_A          265 QATVDYT-PYLLG--RMGRLIIVGYG  287 (359)
T ss_dssp             HHHHHHG-GGGEE--EEEEEEECCCS
T ss_pred             chHHHHH-HHhhc--CCCEEEEEeCC
Confidence            42  222 23444  77778877753

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=94.35  E-value=0.039  Score=58.15  Aligned_cols=81  Identities=11%  Similarity=0.125  Sum_probs=54.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEE-EEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHHhcC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRV-IVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQM  425 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~V-iv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l~~M  425 (718)
                      .+|+|||+|++|+.+++.+... ++++ .++|+++...+.   .|.. +.++++++.+.|+|+.++.+.-. -......+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~---~gv~~~~d~~~ll~~~DvViiatp~~~h-~~~~~~al   79 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK---TPVFDVADVDKHADDVDVLFLCMGSATD-IPEQAPKF   79 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS---SCEEEGGGGGGTTTTCSEEEECSCTTTH-HHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhc---CCCceeCCHHHHhcCCCEEEEcCCcHHH-HHHHHHHH
Confidence            4799999999999999998776 5665 468877544111   2433 24677877889999999876421 12234556


Q ss_pred             CCCeEEEE
Q psy7896         426 RDDAIVCN  433 (718)
Q Consensus       426 K~gAiLIN  433 (718)
                      +.|.-++.
T Consensus        80 ~aG~~Vv~   87 (320)
T 1f06_A           80 AQFACTVD   87 (320)
T ss_dssp             TTTSEEEC
T ss_pred             HCCCEEEE
Confidence            66665444

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=94.33  E-value=0.056  Score=57.33  Aligned_cols=83  Identities=13%  Similarity=0.093  Sum_probs=55.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHH-HhhcCc-----eecCHHHHhc--cCcEEEEcCCCCCCcC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQ-ASMEGY-----EVTTMEEAAK--EGGIFVTTTGCKDIIR  418 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~-a~~~G~-----~v~~Leell~--~aDiIi~atgt~~lI~  418 (718)
                      .+|||||+|+||+.+++.+... +++++ ++|+++.+... +...|+     .+.++++++.  +.|+|++++.+. .--
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~-~h~   85 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS-LHV   85 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG-GHH
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH-HHH
Confidence            5899999999999999988775 56654 68887755432 222342     2468999986  589999988763 111


Q ss_pred             HHHHhcCCCCe-EEE
Q psy7896         419 GEHFLQMRDDA-IVC  432 (718)
Q Consensus       419 ~e~l~~MK~gA-iLI  432 (718)
                      .-....++.|. +++
T Consensus        86 ~~~~~al~aGk~V~~  100 (362)
T 1ydw_A           86 EWAIKAAEKGKHILL  100 (362)
T ss_dssp             HHHHHHHTTTCEEEE
T ss_pred             HHHHHHHHCCCeEEE
Confidence            22234566665 444

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=94.32  E-value=0.043  Score=60.21  Aligned_cols=67  Identities=21%  Similarity=0.243  Sum_probs=49.7

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH--HHHhhcCceec--C-HHHHhccCcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA--LQASMEGYEVT--T-MEEAAKEGGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a--l~a~~~G~~v~--~-Leell~~aDiIi~atg  412 (718)
                      ++.+|+|.|||.|..|+..|+.|...|.+|+++|..+...  .... .|..+.  . ..+.+..+|.|+..++
T Consensus         2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~g   73 (439)
T 2x5o_A            2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPG   73 (439)
T ss_dssp             CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTT
T ss_pred             CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCC
Confidence            3678999999999999999999999999999999765432  1112 455542  1 2456668999888654

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=94.28  E-value=0.06  Score=56.60  Aligned_cols=65  Identities=9%  Similarity=-0.012  Sum_probs=47.5

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~atgt  413 (718)
                      .+|||||+|.||+. .+..++.. +++|. ++|+++.++.+. ...|.  .+.++++++.  +.|+|+++|.+
T Consensus        24 irigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~   96 (350)
T 4had_A           24 LRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPT   96 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCG
T ss_pred             cEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCC
Confidence            48999999999985 56666665 77866 688888664332 23454  3578999986  47999998775

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.28  E-value=0.11  Score=58.18  Aligned_cols=37  Identities=30%  Similarity=0.346  Sum_probs=33.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..|++|.|||.|.+|..+|..++.+|.+|+++++.+.
T Consensus       353 ~~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~  389 (521)
T 1hyu_A          353 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPE  389 (521)
T ss_dssp             GBTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSS
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcc
Confidence            4689999999999999999999999999999987654

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=94.27  E-value=0.19  Score=55.31  Aligned_cols=34  Identities=26%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID  380 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~d  380 (718)
                      .++++.|||.|.||..+|..++.+|.+|++++++
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  219 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS  219 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            4689999999999999999999999999998764

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=94.24  E-value=0.14  Score=52.75  Aligned_cols=39  Identities=18%  Similarity=0.343  Sum_probs=34.8

Q ss_pred             ccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..++||++.|.|. |.||+++|+.|...|++|++.++++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~   82 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEE   82 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            4689999999997 56999999999999999999988764

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=94.23  E-value=0.058  Score=56.60  Aligned_cols=66  Identities=17%  Similarity=0.060  Sum_probs=48.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC---CEE-EEEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG---SRV-IVTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG---a~V-iv~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~atgt~  414 (718)
                      .+|||||+|.||+..++.++..+   +++ -++|+++.++... ...|.  .+.++++++.  +.|+|++++.+.
T Consensus         3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~   77 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHP   77 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGG
T ss_pred             cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcH
Confidence            47999999999999999998764   354 4578877654322 23344  3578999997  689999987653

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.21  E-value=0.13  Score=54.25  Aligned_cols=64  Identities=17%  Similarity=0.195  Sum_probs=46.6

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCC--CEEEEEecCCccHH-HHhhcC-----cee----cCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QASMEG-----YEV----TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a~~~G-----~~v----~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||. |.||+.++..|...|  -+|.++|+++.... ....++     ...    .+++++++.+|+|+.+.+
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag   77 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG   77 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCC
Confidence            37999998 999999999998767  68999999882211 011222     122    257889999999998754

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=94.21  E-value=0.068  Score=57.04  Aligned_cols=66  Identities=15%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcC----ce---ecCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG----YE---VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G----~~---v~~Leell~~aDiIi~atgt  413 (718)
                      +.++|+|+|.|.||+.+|+.|.. ..+|.+.++++.....+....    ..   ...+.++++++|+|+.+.+.
T Consensus        15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~   87 (365)
T 3abi_A           15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPG   87 (365)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred             CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCC
Confidence            34579999999999999999975 468999988775433222111    11   12466788999999987653

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=94.19  E-value=0.089  Score=55.85  Aligned_cols=90  Identities=18%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH---Hhhc-------Ccee--cCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ---ASME-------GYEV--TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~---a~~~-------G~~v--~~Leell~~aDiIi~atgt  413 (718)
                      ..++|+|||.|.+|..+|..+...|. +|.++|+++.+...   ...+       ...+  .+-.+.++.||+|+++.+.
T Consensus         4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~   83 (321)
T 3p7m_A            4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV   83 (321)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence            45799999999999999999876666 99999998865310   1111       1122  1235789999999998553


Q ss_pred             ---CCC-----c--CH-------HHHhcCCCCeEEEEcCC
Q psy7896         414 ---KDI-----I--RG-------EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       414 ---~~l-----I--~~-------e~l~~MK~gAiLIN~GR  436 (718)
                         .++     +  |.       +.+....+++++++++.
T Consensus        84 p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN  123 (321)
T 3p7m_A           84 PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITN  123 (321)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence               222     1  11       12334458889999864

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=94.19  E-value=0.085  Score=55.60  Aligned_cols=88  Identities=19%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHHH-H--hhcC------cee-cCHHHHhccCcEEEEcCCCC--
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINALQ-A--SMEG------YEV-TTMEEAAKEGGIFVTTTGCK--  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al~-a--~~~G------~~v-~~Leell~~aDiIi~atgt~--  414 (718)
                      ++|+|||.|.||..++..+...+  -++.++|+++.+... +  ..+.      ..+ .+-.+.++.||+|+++.+..  
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~~   80 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQR   80 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCCC
Confidence            47999999999999999887655  589999998743321 1  1121      111 12367799999999975532  


Q ss_pred             -CC-------cCH-------HHHhcCCCCeEEEEcCC
Q psy7896         415 -DI-------IRG-------EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 -~l-------I~~-------e~l~~MK~gAiLIN~GR  436 (718)
                       ++       .|.       +.+....++++++|++-
T Consensus        81 ~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (310)
T 2xxj_A           81 PGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATN  117 (310)
T ss_dssp             TTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecC
Confidence             22       111       22333478899999754

>2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ...

Probab=94.18  E-value=0.046  Score=55.31  Aligned_cols=39  Identities=23%  Similarity=0.409  Sum_probs=34.7

Q ss_pred             cccCcEEEEEec---ChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGY---GDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~---G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .+.||++.|.|.   |.||+++|+.|...|++|+++++++..
T Consensus         4 ~l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~   45 (269)
T 2h7i_A            4 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR   45 (269)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHH
T ss_pred             ccCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHH
Confidence            478999999994   899999999999999999999887643

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=94.13  E-value=0.046  Score=58.69  Aligned_cols=68  Identities=16%  Similarity=0.240  Sum_probs=48.7

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCC--EEEEEecCCccHHH-H--hhc------Cce-ecCHHHHhccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-A--SME------GYE-VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a--~~~------G~~-v~~Leell~~aDiIi~atg  412 (718)
                      +.+++|+|||. |.||+.+|..+..+|.  +|.++|+++.+... +  ..+      ... ..+..+.++.||+|+++.|
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG   85 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG   85 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred             cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence            35789999998 9999999998877774  89999987643211 0  111      112 2467889999999998865


Q ss_pred             C
Q psy7896         413 C  413 (718)
Q Consensus       413 t  413 (718)
                      .
T Consensus        86 ~   86 (343)
T 3fi9_A           86 A   86 (343)
T ss_dssp             -
T ss_pred             C
Confidence            3

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=94.10  E-value=0.041  Score=62.05  Aligned_cols=102  Identities=14%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh----hcCceecCHHHH-hccCcEEEEcCCCC--CCcCHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS----MEGYEVTTMEEA-AKEGGIFVTTTGCK--DIIRGEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~----~~G~~v~~Leel-l~~aDiIi~atgt~--~lI~~e~  421 (718)
                      +++.|+|+|++|+.+|+.|...|.+|+++|.||.+..+..    .++.....|+++ ++++|.++.++++.  +++....
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~i~gD~t~~~~L~~agi~~ad~vi~~~~~d~~ni~~~~~  428 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQESPVCNDHVVVYGDATVGQTLRQAGIDRASGIIVTTNDDSTNIFLTLA  428 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCSSCCSSCEEESCSSSSTHHHHHTTTSCSEEEECCSCHHHHHHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChHHHhhcCCEEEeCCCCHHHHHhcCccccCEEEEECCCchHHHHHHHH
Confidence            8999999999999999999999999999999986532211    122222345555 77899998887752  2333344


Q ss_pred             HhcCCCCeEEEEcCCCCccccHHHHhccccc
Q psy7896         422 FLQMRDDAIVCNIGHFDCEIQVSWLDKNAVE  452 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~  452 (718)
                      ...+.+...++--.+.  .-..+.|...+.+
T Consensus       429 ak~l~~~~~iiar~~~--~~~~~~l~~~G~d  457 (565)
T 4gx0_A          429 CRHLHSHIRIVARANG--EENVDQLYAAGAD  457 (565)
T ss_dssp             HHHHCSSSEEEEEESS--TTSHHHHHHHTCS
T ss_pred             HHHHCCCCEEEEEECC--HHHHHHHHHcCCC
Confidence            4556666444433332  2233445544433

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=94.08  E-value=0.15  Score=56.53  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=32.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhC---CCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLF---GSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~f---Ga~Viv~d~dp~  382 (718)
                      .++++.|||.|.||..+|..++.+   |.+|+++++.+.
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~  228 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNL  228 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCc
Confidence            368999999999999999999999   999999987653

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=94.00  E-value=0.066  Score=52.51  Aligned_cols=37  Identities=16%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCC--EEEEEecCCc
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGS--RVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa--~Viv~d~dp~  382 (718)
                      +.+|+|.|.| .|.||+.+++.|...|.  +|+++++++.
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~   55 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKL   55 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCC
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCC
Confidence            5789999999 59999999999999999  9999988764

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=93.96  E-value=0.17  Score=56.43  Aligned_cols=34  Identities=26%  Similarity=0.209  Sum_probs=30.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID  380 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~d  380 (718)
                      ..+++.|||.|.||..+|..++.+|.+|++++++
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            3567999999999999999999999999998764

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=93.96  E-value=0.12  Score=54.85  Aligned_cols=65  Identities=15%  Similarity=0.219  Sum_probs=46.5

Q ss_pred             CcEEEEEe-cChhHHHHHHHHHhCC--CEEEEEecCCccHHH-Hhhc-Cc--ee------cCHHHHhccCcEEEEcCC
Q psy7896         348 GKVAVVAG-YGDVGKGCAQSLRLFG--SRVIVTEIDPINALQ-ASME-GY--EV------TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG-~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al~-a~~~-G~--~v------~~Leell~~aDiIi~atg  412 (718)
                      .++|+|+| .|.||..++..|...|  .+|.++|+++..... ...+ ..  .+      .++.++++.+|+|+.+.+
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag   85 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAG   85 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCC
T ss_pred             CCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCC
Confidence            46899999 8999999999998777  689999987752110 0111 11  11      146788999999998755

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=93.93  E-value=0.092  Score=55.63  Aligned_cols=91  Identities=16%  Similarity=0.158  Sum_probs=60.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCC--ccH------HHHhh----cC--ceecCHHHHhccCcEEEEc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDP--INA------LQASM----EG--YEVTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp--~~a------l~a~~----~G--~~v~~Leell~~aDiIi~a  410 (718)
                      ...++|+|||.|.+|..+|..+...|. +|.++|+++  .+.      +....    ..  ....+-.+.+++||+|+.+
T Consensus         6 ~~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIia   85 (315)
T 3tl2_A            6 IKRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVIT   85 (315)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEEC
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEe
Confidence            356899999999999999999988888 999999985  211      11000    01  1112224678999999998


Q ss_pred             CCC---CCC-----c--C----H---HHHhcCCCCeEEEEcCC
Q psy7896         411 TGC---KDI-----I--R----G---EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       411 tgt---~~l-----I--~----~---e~l~~MK~gAiLIN~GR  436 (718)
                      .|.   .++     +  |    +   +.+....++++++|++.
T Consensus        86 ag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN  128 (315)
T 3tl2_A           86 AGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN  128 (315)
T ss_dssp             CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence            553   222     1  1    1   22334468899999885

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.89  E-value=0.055  Score=51.53  Aligned_cols=39  Identities=26%  Similarity=0.342  Sum_probs=35.7

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhc-CCeEEEeecCchhh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVTEIDPINA  305 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~-Gv~VtV~D~dp~r~  305 (718)
                      ..+++++|+|+|.+|..+++.|++. |+.|+++|.++.+.
T Consensus        37 ~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~   76 (183)
T 3c85_A           37 PGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAA   76 (183)
T ss_dssp             CTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHH
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHH
Confidence            4578899999999999999999999 99999999998765

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=93.89  E-value=0.1  Score=55.48  Aligned_cols=65  Identities=25%  Similarity=0.276  Sum_probs=46.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHH-hhcCce------------------e-cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQA-SMEGYE------------------V-TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a-~~~G~~------------------v-~~Leell~~aDi  406 (718)
                      .+|||+|+|.||+.+++.+... ++++. ++|+++...... ..+|+.                  + .+.++++.+.|+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDv   82 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             cEEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCE
Confidence            3799999999999999999875 45654 467665443221 123321                  1 368888889999


Q ss_pred             EEEcCCC
Q psy7896         407 FVTTTGC  413 (718)
Q Consensus       407 Ii~atgt  413 (718)
                      |+.+|++
T Consensus        83 V~~aTp~   89 (334)
T 2czc_A           83 IVDATPG   89 (334)
T ss_dssp             EEECCST
T ss_pred             EEECCCc
Confidence            9999876

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=93.87  E-value=0.17  Score=57.35  Aligned_cols=34  Identities=26%  Similarity=0.229  Sum_probs=31.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEID  380 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~d  380 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|+++++.
T Consensus       285 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          285 FPGKTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            4678999999999999999999999999998765

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=93.87  E-value=0.075  Score=56.27  Aligned_cols=89  Identities=20%  Similarity=0.187  Sum_probs=61.2

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEE-ecCCcc---HHHHhhcCce-ecCH--------HHHhc---cCcEEE
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVT-EIDPIN---ALQASMEGYE-VTTM--------EEAAK---EGGIFV  408 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~-d~dp~~---al~a~~~G~~-v~~L--------eell~---~aDiIi  408 (718)
                      -.|++|.|+|. |.||..+++.++.+|++|+++ +.++..   ...+...|.. +.+.        .++..   ..|+++
T Consensus       166 ~~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~~Dvvi  245 (357)
T 1zsy_A          166 QPGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLKSLGAEHVITEEELRRPEMKNFFKDMPQPRLAL  245 (357)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHHHTTCSEEEEHHHHHSGGGGGTTSSSCCCSEEE
T ss_pred             CCCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHHhcCCcEEEecCcchHHHHHHHHhCCCCceEEE
Confidence            36899999998 999999999999999987765 343321   1122234542 2222        12222   379999


Q ss_pred             EcCCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         409 TTTGCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       409 ~atgt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      -++|....  .+.++.++++..++.+|.
T Consensus       246 d~~g~~~~--~~~~~~l~~~G~iv~~G~  271 (357)
T 1zsy_A          246 NCVGGKSS--TELLRQLARGGTMVTYGG  271 (357)
T ss_dssp             ESSCHHHH--HHHHTTSCTTCEEEECCC
T ss_pred             ECCCcHHH--HHHHHhhCCCCEEEEEec
Confidence            88876433  357899999999999874

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=93.86  E-value=0.046  Score=57.05  Aligned_cols=89  Identities=20%  Similarity=0.126  Sum_probs=63.0

Q ss_pred             cCc-EEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHH----h-----ccCcEEEEcCCCC
Q psy7896         347 AGK-VAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEA----A-----KEGGIFVTTTGCK  414 (718)
Q Consensus       347 ~Gk-tVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leel----l-----~~aDiIi~atgt~  414 (718)
                      .|+ +|.|+|. |.||..+++.++.+|++|++++.++.+...+...|.. +.+..+.    +     ...|+++.++|..
T Consensus       149 ~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~~~d~vid~~g~~  228 (330)
T 1tt7_A          149 PEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVGGK  228 (330)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCCTH
T ss_pred             CCCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEEECCCchHHHHHHhhcCCccEEEECCcHH
Confidence            354 8999998 9999999999999999999998876654333333432 2222221    1     1368888888763


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                       . -.+.++.++++..++.+|..
T Consensus       229 -~-~~~~~~~l~~~G~iv~~G~~  249 (330)
T 1tt7_A          229 -Q-LASLLSKIQYGGSVAVSGLT  249 (330)
T ss_dssp             -H-HHHHHTTEEEEEEEEECCCS
T ss_pred             -H-HHHHHHhhcCCCEEEEEecC
Confidence             2 34567888999999988864

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=93.80  E-value=0.18  Score=55.75  Aligned_cols=36  Identities=19%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++++.|||.|.||..+|..++.+|.+|+++++.+.
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  216 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDH  216 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            468999999999999999999999999999987653

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=93.80  E-value=0.1  Score=50.12  Aligned_cols=64  Identities=13%  Similarity=0.132  Sum_probs=45.6

Q ss_pred             cEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--CHH----HHhccCcEEEEcCCC
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--TME----EAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--~Le----ell~~aDiIi~atgt  413 (718)
                      ++|.|.| .|.||+.+++.|...|.+|++.++++.+..... .+..+.  ++.    +.+...|+|+.+.+.
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   71 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI   71 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence            4799999 599999999999999999999998875432211 333321  221    567788888876543

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=93.79  E-value=0.11  Score=55.71  Aligned_cols=85  Identities=22%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHH-HHhhcCceec------------------CHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINAL-QASMEGYEVT------------------TMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al-~a~~~G~~v~------------------~Leell~~aDiI  407 (718)
                      .+|||+|+|+||+.+++.+... ++++. ++|+++.... .+...|+.+.                  +.++++.++|++
T Consensus         2 ikVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            2 VNVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             eEEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            3799999999999999998765 56665 4566554321 1222233221                  344566689999


Q ss_pred             EEcCCCCCCcCHHHH-hcCCCCeEEEEcC
Q psy7896         408 VTTTGCKDIIRGEHF-LQMRDDAIVCNIG  435 (718)
Q Consensus       408 i~atgt~~lI~~e~l-~~MK~gAiLIN~G  435 (718)
                      +.+|+..  ...+.. ..++.|+.+|..|
T Consensus        82 ~~aTp~~--~s~~~a~~~~~aG~kvV~~s  108 (340)
T 1b7g_O           82 VDTTPNG--VGAQYKPIYLQLQRNAIFQG  108 (340)
T ss_dssp             EECCSTT--HHHHHHHHHHHTTCEEEECT
T ss_pred             EECCCCc--hhHHHHHHHHHcCCeEEEeC
Confidence            9998763  112222 2235566555544

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=93.77  E-value=0.054  Score=54.53  Aligned_cols=65  Identities=12%  Similarity=0.230  Sum_probs=42.8

Q ss_pred             CcEEEEEecChhHHHHHHH--HHhCCCEEE-EEecCCccHHHHhhcCce---ecCHHHHhccCcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQS--LRLFGSRVI-VTEIDPINALQASMEGYE---VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~--l~~fGa~Vi-v~d~dp~~al~a~~~G~~---v~~Leell~~aDiIi~atgt  413 (718)
                      .++|+|||.|++|+.+++.  ....|.++. ++|.||.+.-. ...|+.   ..++++++++.|++++++.+
T Consensus        85 ~~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~-~i~gv~V~~~~dl~eli~~~D~ViIAvPs  155 (215)
T 2vt3_A           85 MTDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT-EVGGVPVYNLDDLEQHVKDESVAILTVPA  155 (215)
T ss_dssp             --CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTC-EETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHh-HhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence            3679999999999999993  456688766 58888875422 123443   34678888766999888654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=93.75  E-value=0.091  Score=50.76  Aligned_cols=65  Identities=17%  Similarity=0.100  Sum_probs=46.2

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--CHH----HHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--TME----EAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--~Le----ell~~aDiIi~atgt  413 (718)
                      ++|.|.|. |.||+.+++.|...|.+|++..+++.........++.+.  ++.    ++++..|+|+.+.+.
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~   72 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV   72 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence            46899997 999999999999999999999887754332222333321  221    567788888876544

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=93.72  E-value=0.097  Score=55.18  Aligned_cols=68  Identities=18%  Similarity=0.126  Sum_probs=46.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhC--------CCEEE-EEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLF--------GSRVI-VTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~f--------Ga~Vi-v~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~at  411 (718)
                      ++--+|||||+|.||+.-++.++.+        +++|+ ++|+++.++.+. ...|.  .+.++++++.  +.|+|+++|
T Consensus        23 MkkirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~Iat  102 (393)
T 4fb5_A           23 MKPLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTT  102 (393)
T ss_dssp             -CCCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECS
T ss_pred             CCCccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECC
Confidence            3446899999999999877766543        56755 588888765432 23354  3568999986  478999887


Q ss_pred             CC
Q psy7896         412 GC  413 (718)
Q Consensus       412 gt  413 (718)
                      .+
T Consensus       103 P~  104 (393)
T 4fb5_A          103 PN  104 (393)
T ss_dssp             CG
T ss_pred             Ch
Confidence            65

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=93.71  E-value=0.12  Score=56.07  Aligned_cols=85  Identities=13%  Similarity=0.149  Sum_probs=55.4

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc--Ccee------cCHHHHhccCcEEEEcCC
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME--GYEV------TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~--G~~v------~~Leell~~aDiIi~atg  412 (718)
                      |++..+.+++|+|+|.|..|+.+++.++.+|.+|+++| ++........+  -..+      ..+.++++.+|+++.-..
T Consensus        17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~e~e   95 (403)
T 3k5i_A           17 FQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTAEIE   95 (403)
T ss_dssp             ----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEESSS
T ss_pred             EeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEECCC
Confidence            44566789999999999999999999999999999998 65432211122  1111      124567888998866433


Q ss_pred             CCCCcCHHHHhcCCCCe
Q psy7896         413 CKDIIRGEHFLQMRDDA  429 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gA  429 (718)
                      +   ++.+.+..+..|.
T Consensus        96 ~---~~~~~l~~l~~g~  109 (403)
T 3k5i_A           96 H---VDTYALEEVASEV  109 (403)
T ss_dssp             C---SCHHHHHHHTTTS
T ss_pred             C---CCHHHHHHHHcCC
Confidence            3   3555666565543

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=93.63  E-value=0.072  Score=48.37  Aligned_cols=38  Identities=18%  Similarity=0.250  Sum_probs=34.2

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      ..++++|+|+|.+|..+++.|.+.|..|+++|.++.+.
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~   42 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKI   42 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence            35789999999999999999999999999999988764

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=93.49  E-value=0.038  Score=51.85  Aligned_cols=85  Identities=13%  Similarity=0.135  Sum_probs=58.4

Q ss_pred             CcEEEEEec----ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-CHHHHhccCcEEEEcCCCCCC---cCH
Q psy7896         348 GKVAVVAGY----GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-TMEEAAKEGGIFVTTTGCKDI---IRG  419 (718)
Q Consensus       348 GktVGIIG~----G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-~Leell~~aDiIi~atgt~~l---I~~  419 (718)
                      -++|+|||.    |++|..+++.+...|.+|..+  +|....+ ...|..+. +++|+....|++++++....+   +. 
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~v--np~~~g~-~i~G~~~~~sl~el~~~~Dlvii~vp~~~v~~v~~-   88 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPV--SPKVAGK-TLLGQQGYATLADVPEKVDMVDVFRNSEAAWGVAQ-   88 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEE--CSSSTTS-EETTEECCSSTTTCSSCCSEEECCSCSTHHHHHHH-
T ss_pred             CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEe--CCccccc-ccCCeeccCCHHHcCCCCCEEEEEeCHHHHHHHHH-
Confidence            578999999    899999999999989886555  5543101 12466654 688888889999988654322   21 


Q ss_pred             HHHhcCCCCeEEEEcCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRg  437 (718)
                      + +.....++++++.|..
T Consensus        89 ~-~~~~g~~~i~i~~~~~  105 (145)
T 2duw_A           89 E-AIAIGAKTLWLQLGVI  105 (145)
T ss_dssp             H-HHHHTCCEEECCTTCC
T ss_pred             H-HHHcCCCEEEEcCChH
Confidence            2 2235667788877654

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=93.49  E-value=0.071  Score=52.66  Aligned_cols=68  Identities=10%  Similarity=0.085  Sum_probs=47.2

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhhcCcee--------cCHHHHhccCcEEEEcCCC
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFG-SRVIVTEIDPINALQASMEGYEV--------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~~G~~v--------~~Leell~~aDiIi~atgt  413 (718)
                      ...|+|.|.| .|.||+.+++.|...| .+|+++++++....+....+..+        .+++++++..|+|+.+.+.
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~   98 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG   98 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence            3458999999 6999999999999999 89999988775422111112221        2345667788888866543

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=93.48  E-value=0.22  Score=54.84  Aligned_cols=35  Identities=23%  Similarity=0.154  Sum_probs=31.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..++|.|||.|.||..+|..++.+|.+|+++++.+
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            45789999999999999999999999999987654

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=93.44  E-value=0.16  Score=53.21  Aligned_cols=84  Identities=11%  Similarity=-0.059  Sum_probs=56.3

Q ss_pred             cEEEEEecChhHH-HHHHHHHhCCCEE-EEEecCCccHHHHh-hc-Cc-eecCHHHHhc--cCcEEEEcCCCCCCcCHHH
Q psy7896         349 KVAVVAGYGDVGK-GCAQSLRLFGSRV-IVTEIDPINALQAS-ME-GY-EVTTMEEAAK--EGGIFVTTTGCKDIIRGEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~-~vA~~l~~fGa~V-iv~d~dp~~al~a~-~~-G~-~v~~Leell~--~aDiIi~atgt~~lI~~e~  421 (718)
                      .+|||||+|.+|. .+++.++.-|+++ -++|+++.++.... .. +. .+.+++++++  +.|+|+++|.+. .--.-.
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~-~h~~~~   83 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPC-DRAELA   83 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGG-GHHHHH
T ss_pred             cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChh-hHHHHH
Confidence            5899999999996 6777777678986 57898887543322 22 33 3468999997  689999988753 111222


Q ss_pred             HhcCCCCe-EEEE
Q psy7896         422 FLQMRDDA-IVCN  433 (718)
Q Consensus       422 l~~MK~gA-iLIN  433 (718)
                      +..++.|. +++.
T Consensus        84 ~~al~aGkhVl~E   96 (336)
T 2p2s_A           84 LRTLDAGKDFFTA   96 (336)
T ss_dssp             HHHHHTTCEEEEC
T ss_pred             HHHHHCCCcEEEe
Confidence            34556665 5554

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=93.42  E-value=0.12  Score=62.45  Aligned_cols=37  Identities=24%  Similarity=0.174  Sum_probs=33.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..|++|.|||.|.+|..+|..++.+|.+|++++..+.
T Consensus       282 ~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~  318 (965)
T 2gag_A          282 RAGARIAVATTNDSAYELVRELAATGGVVAVIDARSS  318 (965)
T ss_dssp             ESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSS
T ss_pred             CCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCc
Confidence            4579999999999999999999999999999987654

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=93.39  E-value=0.085  Score=55.66  Aligned_cols=88  Identities=14%  Similarity=0.088  Sum_probs=57.5

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCC-CEEEEEecCCccHHHHhhcCcee-----cCHHHHh-----ccCcEEEEcCCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFG-SRVIVTEIDPINALQASMEGYEV-----TTMEEAA-----KEGGIFVTTTGC  413 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~~~G~~v-----~~Leell-----~~aDiIi~atgt  413 (718)
                      -.|++|.|+|. |.||..+++.++.+| ++|++.+. +.+...+. .|...     .++.+.+     ...|+++.++|.
T Consensus       141 ~~g~~VlV~Ga~G~vG~~a~qla~~~g~~~V~~~~~-~~~~~~~~-~ga~~~~~~~~~~~~~~~~~~~~g~Dvv~d~~g~  218 (349)
T 4a27_A          141 REGMSVLVHSAGGGVGQAVAQLCSTVPNVTVFGTAS-TFKHEAIK-DSVTHLFDRNADYVQEVKRISAEGVDIVLDCLCG  218 (349)
T ss_dssp             CTTCEEEESSTTSHHHHHHHHHHTTSTTCEEEEEEC-GGGHHHHG-GGSSEEEETTSCHHHHHHHHCTTCEEEEEEECC-
T ss_pred             CCCCEEEEEcCCcHHHHHHHHHHHHcCCcEEEEeCC-HHHHHHHH-cCCcEEEcCCccHHHHHHHhcCCCceEEEECCCc
Confidence            46899999999 999999999999985 68888763 33322222 44421     1233333     247999988887


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..+  ...++.++++..++.+|..
T Consensus       219 ~~~--~~~~~~l~~~G~~v~~G~~  240 (349)
T 4a27_A          219 DNT--GKGLSLLKPLGTYILYGSS  240 (349)
T ss_dssp             --------CTTEEEEEEEEEEC--
T ss_pred             hhH--HHHHHHhhcCCEEEEECCC
Confidence            543  5678899999999999864

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.35  E-value=0.17  Score=52.10  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             ccccCcEEEEEecC-h--hHHHHHHHHHhCCCEEEEEecCC
Q psy7896         344 IMLAGKVAVVAGYG-D--VGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       344 ~eL~GktVGIIG~G-~--IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..+.||++.|.|.+ .  ||+++|+.|...|++|++.++++
T Consensus        27 ~~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~   67 (293)
T 3grk_A           27 GLLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGD   67 (293)
T ss_dssp             CTTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSH
T ss_pred             ccCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCH
Confidence            35899999999984 4  99999999999999999998774

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=93.22  E-value=0.08  Score=58.85  Aligned_cols=66  Identities=15%  Similarity=0.149  Sum_probs=47.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHHhhc--C----------------------c-eecCHHHHh
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQASME--G----------------------Y-EVTTMEEAA  401 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~--G----------------------~-~v~~Leell  401 (718)
                      -+|||||+|.||+.+++.+... |++|. ++|+++.++..+...  |                      . .+.+.++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL  103 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL  103 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence            5899999999999999888654 66654 578888765433211  3                      1 235788888


Q ss_pred             c--cCcEEEEcCCCC
Q psy7896         402 K--EGGIFVTTTGCK  414 (718)
Q Consensus       402 ~--~aDiIi~atgt~  414 (718)
                      .  +.|+|+.+|++.
T Consensus       104 ~d~dIDaVviaTp~p  118 (446)
T 3upl_A          104 SNPLIDVIIDATGIP  118 (446)
T ss_dssp             TCTTCCEEEECSCCH
T ss_pred             cCCCCCEEEEcCCCh
Confidence            6  478888888763

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=93.21  E-value=1.2  Score=46.24  Aligned_cols=65  Identities=18%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             CcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhc--cCcEEEEcCCCC
Q psy7896         348 GKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAK--EGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~--~aDiIi~atgt~  414 (718)
                      ..+|+|+|+ |++|+.+++.++..|.+ +++..+|.+.-+ ...|..+ .+++++.+  ..|+++.++...
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l~~~g~~-~V~~V~p~~~g~-~~~G~~vy~sl~el~~~~~~D~viI~tP~~   75 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQAIAYGTK-MVGGVTPGKGGT-THLGLPVFNTVREAVAATGATASVIYVPAP   75 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHHCCCEEEECCCGG
T ss_pred             CCEEEEECCCChHHHHHHHHHHHCCCe-EEEEeCCCcccc-eeCCeeccCCHHHHhhcCCCCEEEEecCHH
Confidence            468999999 99999999999888998 455566753211 1246554 47999988  899999887654

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=93.15  E-value=0.068  Score=57.76  Aligned_cols=55  Identities=24%  Similarity=0.364  Sum_probs=42.4

Q ss_pred             ccchhhHHHHHhhhccc-ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         249 YGCRESLVDGLKRATDI-MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       249 ~G~~es~~~~i~r~t~~-~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ||.-.++-..+.+ .+. .+.||+++|+|+|+||..+|+.|+++|.+|+++|.++.+
T Consensus       155 ~Gv~~~~~~~~~~-~G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~  210 (355)
T 1c1d_A          155 VGVFEAMKATVAH-RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTER  210 (355)
T ss_dssp             HHHHHHHHHHHHH-TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             HHHHHHHHHHHHh-cCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccH
Confidence            3433333333333 355 589999999999999999999999999999999987654

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=93.13  E-value=0.065  Score=58.77  Aligned_cols=85  Identities=11%  Similarity=0.084  Sum_probs=55.8

Q ss_pred             CcEEEEEecChhHH-HHHHHHHhC-CCEE-EEEecCCccHHHH-hhcCce------ecCHHHHhc--cCcEEEEcCCCCC
Q psy7896         348 GKVAVVAGYGDVGK-GCAQSLRLF-GSRV-IVTEIDPINALQA-SMEGYE------VTTMEEAAK--EGGIFVTTTGCKD  415 (718)
Q Consensus       348 GktVGIIG~G~IG~-~vA~~l~~f-Ga~V-iv~d~dp~~al~a-~~~G~~------v~~Leell~--~aDiIi~atgt~~  415 (718)
                      -.+|||||+|+||+ ..++.++.. ++++ .++|+++.+.... ...|..      +.++++++.  +.|+|++++.+. 
T Consensus        83 ~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~-  161 (433)
T 1h6d_A           83 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNS-  161 (433)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGG-
T ss_pred             ceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCch-
Confidence            35899999999997 888888765 5675 4788887654322 223432      467899987  789999988763 


Q ss_pred             CcCHHHHhcCCCCe-EEEE
Q psy7896         416 IIRGEHFLQMRDDA-IVCN  433 (718)
Q Consensus       416 lI~~e~l~~MK~gA-iLIN  433 (718)
                      .--.-....++.|. +++.
T Consensus       162 ~h~~~~~~al~aGk~Vl~E  180 (433)
T 1h6d_A          162 LHAEFAIRAFKAGKHVMCE  180 (433)
T ss_dssp             GHHHHHHHHHHTTCEEEEC
T ss_pred             hHHHHHHHHHHCCCcEEEc
Confidence            21122234455555 4543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=93.10  E-value=0.1  Score=52.48  Aligned_cols=65  Identities=20%  Similarity=0.136  Sum_probs=45.3

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec--CHHHH-hccCcEEEEcCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT--TMEEA-AKEGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~--~Leel-l~~aDiIi~atg  412 (718)
                      .++|.|.|.|.||+.+++.|...|.+|++..+++.........++.+.  ++.++ ++.+|+|+.+.+
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~   72 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTA   72 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCC
Confidence            378999999999999999999999999999888754332222343321  11111 567777776543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=93.02  E-value=0.11  Score=54.78  Aligned_cols=86  Identities=21%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-H--hhc-------C--cee-cCHHHHhccCcEEEEcCCCC-
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-A--SME-------G--YEV-TTMEEAAKEGGIFVTTTGCK-  414 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a--~~~-------G--~~v-~~Leell~~aDiIi~atgt~-  414 (718)
                      +|+|||.|.+|..+|..+...|. +|.++|+++.+... +  ..+       .  +.. .+. +.++.||+|+.+.+.. 
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~   79 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGR   79 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCC
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCC
Confidence            58999999999999998865565 79999998754211 0  011       2  122 344 6799999999985432 


Q ss_pred             --CCc-----------CH---HHHhcCCCCeEEEEcCC
Q psy7896         415 --DII-----------RG---EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 --~lI-----------~~---e~l~~MK~gAiLIN~GR  436 (718)
                        ++-           -.   +.+....++++++|++-
T Consensus        80 k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN  117 (308)
T 2d4a_B           80 KPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN  117 (308)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence              220           11   12333358899999754

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.00  E-value=0.09  Score=51.00  Aligned_cols=63  Identities=21%  Similarity=0.152  Sum_probs=45.4

Q ss_pred             cEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------cCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------~~Leell~~aDiIi~atg  412 (718)
                      ++|.|.| .|.||+.+++.|...|.+|++.++++..... ...++.+        .++.++++..|+|+.+.+
T Consensus         5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~   76 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI-ENEHLKVKKADVSSLDEVCEVCKGADAVISAFN   76 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC-CCTTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred             CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh-ccCceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence            7899999 5999999999999999999999887653211 1122221        235567778888887654

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=92.99  E-value=0.098  Score=54.75  Aligned_cols=91  Identities=16%  Similarity=0.167  Sum_probs=61.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHh-CCCEEEEEecCCccHHHHhhcCcee------cCHHH-Hhc-----cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRL-FGSRVIVTEIDPINALQASMEGYEV------TTMEE-AAK-----EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~-fGa~Viv~d~dp~~al~a~~~G~~v------~~Lee-ll~-----~aDiIi~atg  412 (718)
                      ..|.+|.|+|.|.+|...++.++. .|++|++++.++.+...+...|...      .+..+ +.+     ..|+++.+++
T Consensus       162 ~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~~~i~~~~~~~~~~v~~~t~g~g~d~~~~~~~  241 (348)
T 4eez_A          162 KPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGADVTINSGDVNPVDEIKKITGGLGVQSAIVCAV  241 (348)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCSEEEEC-CCCHHHHHHHHTTSSCEEEEEECCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCeEEEeCCCCCHHHHhhhhcCCCCceEEEEecc
Confidence            468999999999999999999985 5789999998876544444445321      12222 221     2456666665


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ....+ ...++.++++..++.+|..
T Consensus       242 ~~~~~-~~~~~~l~~~G~~v~~g~~  265 (348)
T 4eez_A          242 ARIAF-EQAVASLKPMGKMVAVAVP  265 (348)
T ss_dssp             CHHHH-HHHHHTEEEEEEEEECCCC
T ss_pred             Ccchh-heeheeecCCceEEEEecc
Confidence            53322 3567788888888888764

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=92.99  E-value=0.075  Score=55.12  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=50.7

Q ss_pred             ccceEEEecCCcccccccccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         229 LGVPAINVNDSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       229 l~~Pv~~v~ds~~K~~fd~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .+++|+|..+.. +..--|....+|..+..+....+..+.|+++.|+|+|.+|+.+++.|+++|.+|++++..+.+.
T Consensus       116 ~gi~v~~~~~~~-~~~~~~~~svae~a~~~~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~  191 (293)
T 3d4o_A          116 TNRTLVKLMERD-DIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLL  191 (293)
T ss_dssp             HTCEEEEGGGCH-HHHHHHHHHHHHHHHHHHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             cCCeEEEecCCc-eeeeeccHhHHHHHHHHHHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHH
Confidence            467887765310 0000122223333443333323456899999999999999999999999999999999877643

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=92.95  E-value=0.28  Score=49.87  Aligned_cols=39  Identities=38%  Similarity=0.528  Sum_probs=33.9

Q ss_pred             cccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         343 DIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       343 g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ...+.||++.|.|.+ .||+++|+.|...|++|++.+.++
T Consensus        26 ~~~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~   65 (271)
T 3v2g_A           26 SISLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNA   65 (271)
T ss_dssp             TTCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ccCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            356899999999975 599999999999999999986554

>2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A

Probab=92.94  E-value=0.22  Score=49.73  Aligned_cols=37  Identities=32%  Similarity=0.509  Sum_probs=33.3

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +.||++.|.|. |.||+++|+.|...|++|++.++++.
T Consensus         2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~   39 (255)
T 2q2v_A            2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDP   39 (255)
T ss_dssp             CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            67899999998 67999999999999999999987764

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=92.92  E-value=0.23  Score=51.98  Aligned_cols=65  Identities=11%  Similarity=0.065  Sum_probs=48.3

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCCEEE-EEecCCccHHHHhh-cCc-eecCHHHHh----------ccCcEEEEcCCC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGSRVI-VTEIDPINALQASM-EGY-EVTTMEEAA----------KEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa~Vi-v~d~dp~~al~a~~-~G~-~v~~Leell----------~~aDiIi~atgt  413 (718)
                      .+|||||+ |.||+..++.++..+.+++ ++|+++.++..+.. .+. .+.++++++          .+.|+|+++|.+
T Consensus         4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~   82 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPN   82 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCG
T ss_pred             eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCc
Confidence            58999999 7899999999998898755 57888765422211 122 346788887          568999998876

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=92.90  E-value=0.13  Score=56.04  Aligned_cols=65  Identities=12%  Similarity=0.128  Sum_probs=47.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC---CEEEEEecCCccHHHHhh---c----Cce--------ecCHHHHhcc--CcEEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG---SRVIVTEIDPINALQASM---E----GYE--------VTTMEEAAKE--GGIFV  408 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG---a~Viv~d~dp~~al~a~~---~----G~~--------v~~Leell~~--aDiIi  408 (718)
                      ++|+|+|.|.||+.+++.|...|   .+|+++++++.+......   .    .+.        ..++++++++  .|+|+
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi   81 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL   81 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence            58999999999999999999888   499999988765322111   0    121        1235677777  89999


Q ss_pred             EcCCC
Q psy7896         409 TTTGC  413 (718)
Q Consensus       409 ~atgt  413 (718)
                      .+++.
T Consensus        82 n~ag~   86 (405)
T 4ina_A           82 NIALP   86 (405)
T ss_dssp             ECSCG
T ss_pred             ECCCc
Confidence            88764

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=92.82  E-value=1.7  Score=46.03  Aligned_cols=162  Identities=14%  Similarity=0.170  Sum_probs=104.8

Q ss_pred             ccccCcEEEEEecChhHHH---HHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHH----hccCcEEEEcCCCCCC
Q psy7896         344 IMLAGKVAVVAGYGDVGKG---CAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEA----AKEGGIFVTTTGCKDI  416 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~---vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leel----l~~aDiIi~atgt~~l  416 (718)
                      ..|+||+++.+=+-+--+.   +-.-++.+|++|+..+......+   ..|   .++.+-    -+-+|+|+.-+...+.
T Consensus        40 ~~L~gk~l~~lF~e~STRTR~SFe~A~~~LGg~~i~l~~~~~s~~---~kg---Esl~DTarvls~~~D~iviR~~~~~~  113 (308)
T 1ml4_A           40 EYAKGKILATLFFEPSTRTRLSFESAMHRLGGAVIGFAEASTSSV---KKG---ESLRDTIKTVEQYCDVIVIRHPKEGA  113 (308)
T ss_dssp             CTTTTCEEEEEESSCCSHHHHHHHHHHHHTTCEEEEESCGGGSGG---GGT---CCHHHHHHHHTTTCSEEEEEESSTTH
T ss_pred             cccCCCEEEEEecCCCchHHHHHHHHHHHhCCeEEEeCCCccccc---cCC---CCHHHHHHHHHHhCcEEEEecCChhH
Confidence            3489999999999875443   33445789999999853321111   122   133332    2458988875443332


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCCccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEAPTL  496 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~a~~  496 (718)
                      +  +.++.- .+.=+||.|-|+.+=..++|.+                                                
T Consensus       114 ~--~~la~~-~~vPVINag~g~~~HPtQ~LaD------------------------------------------------  142 (308)
T 1ml4_A          114 A--RLAAEV-AEVPVINAGDGSNQHPTQTLLD------------------------------------------------  142 (308)
T ss_dssp             H--HHHHHT-CSSCEEEEEETTSCCHHHHHHH------------------------------------------------
T ss_pred             H--HHHHHh-CCCCEEeCccCCccCcHHHHHH------------------------------------------------
Confidence            2  223321 2345778776643333344433                                                


Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecch--hhHHHHHHHHHHcCCeEEeeccCcC
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMT--VQTAVLIETLLELGAEVQWSSCNIF  574 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~--~~Ta~L~~~l~~~GA~v~~~~~npl  574 (718)
                                                 +..|+++|   .+|+|++|++++.+.  --.-.|+..+..+|++|++++-.-|
T Consensus       143 ---------------------------l~Ti~e~~---g~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~  192 (308)
T 1ml4_A          143 ---------------------------LYTIKKEF---GRIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELL  192 (308)
T ss_dssp             ---------------------------HHHHHHHS---SCSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGG
T ss_pred             ---------------------------HHHHHHHh---CCCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccc
Confidence                                       35667766   469999999999983  4556788999999999999999888


Q ss_pred             CchHHHHHHHHhcCceEE
Q psy7896         575 STQDHAAAAIAARGVAVY  592 (718)
Q Consensus       575 stqd~vaaal~~~gi~v~  592 (718)
                      .-.+++.+.+.+.|.++.
T Consensus       193 ~~~~~~~~~~~~~g~~~~  210 (308)
T 1ml4_A          193 RMPRHIVEELREKGMKVV  210 (308)
T ss_dssp             CCCHHHHHHHHHTTCCEE
T ss_pred             cCCHHHHHHHHHcCCeEE
Confidence            888878777667776643

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=92.80  E-value=0.31  Score=49.31  Aligned_cols=41  Identities=37%  Similarity=0.597  Sum_probs=35.0

Q ss_pred             hhcccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         341 YLDIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +....+.||++.|.|.+ .||+++|+.|...|++|++.+.+.
T Consensus        11 ~~~~~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~   52 (270)
T 3is3_A           11 YIPGRLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANS   52 (270)
T ss_dssp             CCTTCCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             cCCCCcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCC
Confidence            34567899999999976 599999999999999999976554

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=92.78  E-value=0.14  Score=54.22  Aligned_cols=65  Identities=11%  Similarity=0.110  Sum_probs=45.1

Q ss_pred             cEEEEEecChhHH-HHHHHHHhC-CCEEE-EEecCCccHHHHhh--cCce-ecCHHHHhcc--CcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGK-GCAQSLRLF-GSRVI-VTEIDPINALQASM--EGYE-VTTMEEAAKE--GGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~-~vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~--~G~~-v~~Leell~~--aDiIi~atgt  413 (718)
                      .+|||||+|.||+ ..+..++.. +++|. ++|++.........  .+.. +.++++++.+  .|+|+++|.+
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~   75 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPA   75 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCG
T ss_pred             eEEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCc
Confidence            4799999999999 567767665 77765 67776222221111  3443 5689999975  8999998776

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=92.77  E-value=0.15  Score=56.64  Aligned_cols=64  Identities=20%  Similarity=0.258  Sum_probs=45.6

Q ss_pred             cCcEEEEEecChh--HHHHHHHHHh----CCCEEEEEecCCccHH--HHhhc-------Cce-ecCHHHHhccCcEEEEc
Q psy7896         347 AGKVAVVAGYGDV--GKGCAQSLRL----FGSRVIVTEIDPINAL--QASME-------GYE-VTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       347 ~GktVGIIG~G~I--G~~vA~~l~~----fGa~Viv~d~dp~~al--~a~~~-------G~~-v~~Leell~~aDiIi~a  410 (718)
                      +.++|+|||.|.+  |..+++.+..    .| +|.++|+++.+..  ....+       .+. ..+++++++.||+|+.+
T Consensus         4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a   82 (450)
T 3fef_A            4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS   82 (450)
T ss_dssp             CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred             CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence            5679999999997  5788877653    46 9999999885421  11110       122 25799999999999986


Q ss_pred             C
Q psy7896         411 T  411 (718)
Q Consensus       411 t  411 (718)
                      .
T Consensus        83 i   83 (450)
T 3fef_A           83 I   83 (450)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=92.75  E-value=0.15  Score=55.85  Aligned_cols=81  Identities=10%  Similarity=0.082  Sum_probs=54.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHHh----hcC---ce-ec----CHHHHhc--cCcEEEEcC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQAS----MEG---YE-VT----TMEEAAK--EGGIFVTTT  411 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a~----~~G---~~-v~----~Leell~--~aDiIi~at  411 (718)
                      -.+|||||+|.||+..++.+... |++|. ++|+++.+.....    ..|   .. +.    +++++++  +.|+|++++
T Consensus        20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~t   99 (444)
T 2ixa_A           20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSS   99 (444)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECC
T ss_pred             CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcC
Confidence            35899999999999999988875 67754 6888876543321    124   22 45    8999997  589999987


Q ss_pred             CCCCCcCHHHHhcCCCCe
Q psy7896         412 GCKDIIRGEHFLQMRDDA  429 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gA  429 (718)
                      .+. .--.-.+..|+.|.
T Consensus       100 p~~-~h~~~~~~al~aGk  116 (444)
T 2ixa_A          100 PWE-WHHEHGVAAMKAGK  116 (444)
T ss_dssp             CGG-GHHHHHHHHHHTTC
T ss_pred             CcH-HHHHHHHHHHHCCC
Confidence            653 11122234566665

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=92.72  E-value=0.24  Score=50.41  Aligned_cols=39  Identities=38%  Similarity=0.543  Sum_probs=34.0

Q ss_pred             ccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+.||++.|.|.+ .||+++|+.|...|++|++.++++.
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~   64 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANST   64 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            45789999999864 5999999999999999999987764

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=92.72  E-value=0.19  Score=50.72  Aligned_cols=36  Identities=28%  Similarity=0.352  Sum_probs=32.8

Q ss_pred             cccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecC
Q psy7896         345 MLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEID  380 (718)
Q Consensus       345 eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~d  380 (718)
                      .+.||++.|.|.+ .||+++|+.|...|++|++++++
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEccc
Confidence            5789999999975 59999999999999999999876

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=92.68  E-value=0.093  Score=49.15  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|.|||.|..|..+|..|+..|.+|+++|..+.
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~   36 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRG   36 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            499999999999999999999999999997653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	718
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	1e-93
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	9e-47
d1v8ba2	313	c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystei	5e-44
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	2e-89
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	1e-78
d1li4a2	267	c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystei	5e-45
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	6e-45
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	4e-31
d1v8ba1	163	c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas	2e-11
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	1e-36
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	4e-27
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	4e-11
d1c1da1	201	c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R	7e-05
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	5e-04
d1hwxa1	293	c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (	0.003

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  291 bits (746), Expect = 1e-93
 Identities = 128/358 (35%), Positives = 183/358 (51%), Gaps = 70/358 (19%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
            DI LA +G+  + ++ENEMPGLM +R +YG  + LK A+I GCLHMTV+ A+LIETL +
Sbjct: 6   KDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQK 65

Query: 62  LGAEVQWSSCNIFSTQDHAAAAI-AARGVAVYAWKGETDEEYVWCIEQTLVFPDGKP--L 118
           LGA+++W SCNI+ST D+AAAA+     V V+AWK ET EEY WC+E  L + DG     
Sbjct: 66  LGAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGP 125

Query: 119 NMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVT 178
           +MI+DDGGD T LVH+                      LY+  ++N L  P    N+   
Sbjct: 126 DMIVDDGGDATLLVHKGVE----------------YEKLYE--EKNILPDPEKAKNEEER 167

Query: 179 KPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVND 238
             L ++ +          +K+     +I G+SEETTTGV  L KM K+N+L   AINVND
Sbjct: 168 CFLTLLKNSILKNP----KKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVND 223

Query: 239 SVTKSKFDN------LYGCRESL--VDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRL 290
           +VTK K+D+         C ++   +D  +         KV ++                
Sbjct: 224 AVTKQKYDHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPK-------------- 269

Query: 291 FGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
                                   LDE+VA  HL+ L   LT+L ++Q ++L +  +G
Sbjct: 270 -----------------------HLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSG 304

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  166 bits (421), Expect = 9e-47
 Identities = 65/123 (52%), Positives = 87/123 (70%), Gaps = 1/123 (0%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA +G+  + ++ENEMPGLM +R +YG  + LK A+I GCLHMTV+ A+LIETL +L
Sbjct: 7   DISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKL 66

Query: 563 GAEVQWSSCNIFSTQDHAAAAI-AARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNH 621
           GA+++W SCNI+ST D+AAAA+     V V+AWK ET EEY WC+E  L       NG  
Sbjct: 67  GAQIRWCSCNIYSTADYAAAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPD 126

Query: 622 IIL 624
           +I+
Sbjct: 127 MIV 129

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  158 bits (401), Expect = 5e-44
 Identities = 40/84 (47%), Positives = 56/84 (66%), Gaps = 2/84 (2%)

Query: 637 MGHPSFVMSNSFTNQVLAQIELWTKH--SQYPVGVYMLPKKLDEEVAALHLEHLGVKLTK 694
             HP+FVMS SF NQ  AQ++LW     ++Y   VY+LPK LDE+VA  HL+ L   LT+
Sbjct: 230 YDHPAFVMSFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTE 289

Query: 695 LTEDQAKYLGLPIEGPYKPDHYRY 718
           L ++Q ++LG+   GP+K + YRY
Sbjct: 290 LDDNQCQFLGVNKSGPFKSNEYRY 313

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  278 bits (713), Expect = 2e-89
 Identities = 153/259 (59%), Positives = 174/259 (67%), Gaps = 43/259 (16%)

Query: 503 DIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLEL 562
           DI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+ L
Sbjct: 9   DIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVTL 68

Query: 563 GAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNG--- 619
           GAEVQWSSCNIFSTQDHAAAAIA  G+ VYAWKGETDEEY+WCIEQTL  +    N    
Sbjct: 69  GAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPLNMILD 128

Query: 620 -----------------NHII---------------LLAEGRL----VNLGCA----MGH 639
                              I                ++A G L    +N+  +      H
Sbjct: 129 DGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTKSKFH 188

Query: 640 PSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQ 699
           PSFVMSNSFTNQV+AQIELWT   +YPVGV+ LPKKLDE VA  HL  L VKLTKLTE Q
Sbjct: 189 PSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNVKLTKLTEKQ 248

Query: 700 AKYLGLPIEGPYKPDHYRY 718
           A+YLG+  +GP+KPDHYRY
Sbjct: 249 AQYLGMSCDGPFKPDHYRY 267

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  250 bits (640), Expect = 1e-78
 Identities = 141/178 (79%), Positives = 150/178 (84%), Gaps = 1/178 (0%)

Query: 2   ADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLE 61
           ADI LA WGRK + +AENEMPGLM +R +Y A K LKGARIAGCLHMTV+TAVLIETL+ 
Sbjct: 8   ADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVT 67

Query: 62  LGAEVQWSSCNIFSTQDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMI 121
           LGAEVQWSSCNIFSTQDHAAAAIA  G+ VYAWKGETDEEY+WCIEQTL F DG   NMI
Sbjct: 68  LGAEVQWSSCNIFSTQDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPL-NMI 126

Query: 122 LDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTK 179
           LDDGGDLTNL+H KYPQ L  IRGISEETTTGVHNLYKM     L VPAINVNDSVTK
Sbjct: 127 LDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVNDSVTK 184

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 267

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  159 bits (405), Expect = 5e-45
 Identities = 78/171 (45%), Positives = 88/171 (51%), Gaps = 32/171 (18%)

Query: 178 TKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVN 237
             PLNMILDDGGDLTNL+H KYPQ L  IRGISEETTTGVHNLYKM     L VPAINVN
Sbjct: 120 DGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGVHNLYKMMANGILKVPAINVN 179

Query: 238 DSVTKSKFDNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIV 297
           DSVTKSKF   +    S  + +    ++        V  +                    
Sbjct: 180 DSVTKSKFHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPK---------------- 223

Query: 298 TEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIMLAG 348
                           +LDE VA  HL  L VKLTKLTE QA+YL +   G
Sbjct: 224 ----------------KLDEAVAEAHLGKLNVKLTKLTEKQAQYLGMSCDG 258

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  156 bits (395), Expect = 6e-45
 Identities = 63/119 (52%), Positives = 87/119 (73%), Gaps = 1/119 (0%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D +++GK+ V+ GYGDVGKGCA S++  G+RV +TEIDPI A+QA MEG+ V T++E   
Sbjct: 18  DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN-AVEKVNVKPQV 460
           +G  F+T TG  D+I+ EH L+M+++A+V NIGHFD EIQV+ L     +   NVKPQV
Sbjct: 78  KGDFFITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQV 136

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score =  117 bits (294), Expect = 4e-31
 Identities = 43/68 (63%), Positives = 55/68 (80%)

Query: 247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL 306
           N+YGCR SL DGL RATD +++GK+ V+ GYGDVGKGCA S++  G+RV +TEIDPI A+
Sbjct: 1   NVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAI 60

Query: 307 QASMEGYE 314
           QA MEG+ 
Sbjct: 61  QAVMEGFN 68

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 22/28 (78%), Positives = 24/28 (85%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMG 638
           VDR TLPNGN II+LA GRL+NLGCA G
Sbjct: 136 VDRITLPNGNKIIVLARGRLLNLGCATG 163

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  132 bits (334), Expect = 1e-36
 Identities = 96/118 (81%), Positives = 108/118 (91%)

Query: 343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK 402
           D+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINALQA+MEGYEVTTM+EA +
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQ 78

Query: 403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV 460
           EG IFVTTTGC DII G HF QM+DDAIVCNIGHFD EI V WL++NAVEKVN+KPQV
Sbjct: 79  EGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV 136

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  105 bits (264), Expect = 4e-27
 Identities = 60/69 (86%), Positives = 68/69 (98%)

Query: 246 DNLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA 305
           DNLYGCRESL+DG+KRATD+M+AGKVAVVAGYGDVGKGCAQ+LR FG+RVI+TEIDPINA
Sbjct: 1   DNLYGCRESLIDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINA 60

Query: 306 LQASMEGYE 314
           LQA+MEGYE
Sbjct: 61  LQAAMEGYE 69

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 4e-11
 Identities = 24/28 (85%), Positives = 24/28 (85%)

Query: 611 VDRYTLPNGNHIILLAEGRLVNLGCAMG 638
           VDRY L NG  IILLAEGRLVNLGCAMG
Sbjct: 136 VDRYRLKNGRRIILLAEGRLVNLGCAMG 163

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

 Score = 42.4 bits (99), Expect = 7e-05
 Identities = 16/87 (18%), Positives = 28/87 (32%)

Query: 346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGG 405
           L G   +V G G VG   A      G++++V + D      A   G+    +E+      
Sbjct: 25  LDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPC 84

Query: 406 IFVTTTGCKDIIRGEHFLQMRDDAIVC 432
                     +I  E    +    +  
Sbjct: 85  DVFAPCAMGGVITTEVARTLDCSVVAG 111

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 38.2 bits (88), Expect = 5e-04
 Identities = 19/101 (18%), Positives = 32/101 (31%), Gaps = 6/101 (5%)

Query: 340 KYLDIM--LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA----LQASMEGYE 393
            +L I   L  +  ++ G GDV +  A+ L   G+R+ V  +  I          M    
Sbjct: 2   DHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLV 61

Query: 394 VTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNI 434
               +E   +           D +            I CN+
Sbjct: 62  EGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.8 bits (87), Expect = 0.003
 Identities = 16/121 (13%), Positives = 37/121 (30%), Gaps = 3/121 (2%)

Query: 331 LTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME 390
           +   +      +      K   V G+G+VG    + L  FG++ +   +   +    + +
Sbjct: 19  IENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVA--VGESDGSIWNPD 76

Query: 391 GYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNA 450
           G +   +E+   + G  +       I  G       D  I         +     +    
Sbjct: 77  GIDPKELEDFKLQHG-TILGFPKAKIYEGSILEVDCDILIPAASEKQLTKSNAPRVKAKI 135

Query: 451 V 451
           +
Sbjct: 136 I 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	718
d1v8ba2	313	S-adenosylhomocystein hydrolase {Plasmodium falcip	100.0
d1li4a2	267	S-adenosylhomocystein hydrolase {Human (Homo sapie	100.0
d1v8ba2	313	S-adenosylhomocystein hydrolase {Plasmodium falcip	100.0
d1li4a2	267	S-adenosylhomocystein hydrolase {Human (Homo sapie	100.0
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	100.0
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.85
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.85
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.84
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.83
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.82
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.81
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.8
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.79
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.7
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.67
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.65
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.4
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.23
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.22
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	98.19
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.16
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.15
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	98.15
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.11
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.11
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.04
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.01
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	97.98
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.87
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.86
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.81
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.77
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.77
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.71
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.67
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	97.67
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.63
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.58
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.52
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	97.5
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	97.44
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	97.4
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.37
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	97.34
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.33
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.3
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.28
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.28
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.26
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	97.2
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	97.2
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	97.2
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.19
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.15
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	97.15
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	97.14
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.97
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.96
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.95
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.94
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.91
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.8
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.72
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	96.72
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	96.71
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.65
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	96.64
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.63
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	96.56
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	96.5
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	96.45
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	96.37
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.37
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	96.35
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	96.33
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.32
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	96.3
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.28
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.27
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	96.25
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	96.23
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.2
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.07
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.04
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.03
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.02
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	95.99
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.97
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	95.87
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	95.87
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	95.83
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	95.81
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	95.81
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	95.7
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.68
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.65
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.56
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.54
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.46
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	95.46
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.43
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	95.37
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.34
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.33
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.32
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.3
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.26
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.22
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.21
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.21
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.19
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.18
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.16
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.16
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.14
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.14
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.13
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.05
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	95.04
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.03
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	95.01
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.99
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	94.98
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.95
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	94.94
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	94.9
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.89
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	94.89
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	94.88
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	94.87
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.86
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.83
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.72
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.7
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	94.67
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.66
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.63
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.62
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	94.62
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.56
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	94.54
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.53
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	94.53
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	94.5
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.47
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.45
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.45
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.43
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.41
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.39
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	94.39
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	94.36
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.28
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.26
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	94.24
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	94.17
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	94.14
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.12
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	94.07
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.06
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	94.04
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	94.03
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.03
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	94.01
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	94.0
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.97
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.91
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	93.9
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	93.85
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	93.83
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	93.83
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.75
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	93.75
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	93.75
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	93.69
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	93.68
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.58
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	93.58
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	93.53
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	93.5
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.41
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	93.28
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	93.23
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	93.21
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.2
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	93.19
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	93.17
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	93.15
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	93.01
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	92.88
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	92.83
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	92.8
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.79
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	92.79
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.73
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.72
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	92.7
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	92.65
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	92.58
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	92.51
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	92.5
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	92.49
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.47
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.46
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	92.42
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	92.38
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	92.18
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	92.11
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	92.08
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.03
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	92.01
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.98
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	91.91
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.89
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	91.87
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	91.84
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	91.84
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	91.79
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	91.78
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	91.72
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	91.64
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	91.61
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	91.61
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	91.59
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	91.56
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.53
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	91.53
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	91.52
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	91.47
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	91.46
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	91.39
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	91.35
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.34
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	91.32
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	91.31
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	91.29
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.25
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	91.12
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	91.09
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	91.05
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	91.04
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.98
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	90.96
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.91
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	90.9
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	90.88
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	90.82
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.81
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	90.79
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	90.78
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	90.77
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	90.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	90.66
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	90.48
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	90.4
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.38
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	90.22
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	90.2
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.18
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.11
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	90.02
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	90.0
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	89.99
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.94
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	89.88
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	89.87
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	89.86
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	89.85
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	89.85
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.72
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	89.71
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.62
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	89.47
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	89.37
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	89.34
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	89.32
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	89.26
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.19
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.19
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.14
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	89.11
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	89.1
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	89.05
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	88.99
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	88.94
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	88.89
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	88.89
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	88.82
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	88.81
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	88.73
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	88.71
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	88.63
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	88.63
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	88.41
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	88.31
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	88.3
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	88.29
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	88.13
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.11
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	88.07
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	87.99
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	87.98
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	87.92
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	87.86
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	87.75
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	87.72
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	87.71
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	87.6
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	87.54
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	87.48
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.42
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	87.35
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	87.24
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	87.19
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	87.15
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	87.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.08
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	86.98
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	86.88
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.85
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	86.82
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.79
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	86.67
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	86.37
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	86.28
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	86.27
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	86.22
d1js1x2	161	Transcarbamylase-like protein {Bacteroides fragili	86.2
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	86.05
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	86.05
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	86.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	85.94
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	85.86
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.72
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.69
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.68
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.66
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	85.64
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	85.58
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	85.51
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	85.49
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	85.39
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	85.39
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	85.34
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	85.2
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	85.2
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.17
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	85.15
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.14
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	85.07
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.0
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	84.97
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	84.97
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	84.92
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	84.89
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	84.88
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	84.88
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	84.8
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.71
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	84.64
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	84.56
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	84.51
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	84.43
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	84.39
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	84.35
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	84.33
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	84.31
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	84.27
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.23
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	84.03
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	83.99
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	83.99
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	83.91
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	83.87
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	83.83
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	83.77
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	83.73
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	83.72
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	83.67
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	83.59
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	83.49
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	83.43
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	83.36
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	83.09
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	83.06
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	83.06
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	83.05
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	82.61
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	82.61
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	82.12
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	81.91
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	81.86
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	81.31
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	81.27
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	81.03
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	80.92
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	80.85
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	80.84
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	80.64
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	80.57
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	80.52
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	80.5
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	80.49
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	80.44
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	80.36
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	80.18
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	80.17
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.16
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.14
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	80.13

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=3.6e-92  Score=738.35  Aligned_cols=222  Identities=49%  Similarity=0.774  Sum_probs=190.5

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      ||||+||+|||++|+||++|||+||++|++|+.+|||||+||++|||||+|||+|++||+++||+|+|||||||||||||
T Consensus         5 VkDisLA~~G~~~IewAe~eMP~L~alr~~~~~~kPlkG~rIagcLHmt~qTAvLietL~~~GAeV~~~scNp~STQD~v   84 (313)
T d1v8ba2           5 VKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTADYA   84 (313)
T ss_dssp             CSCGGGHHHHHHHHHHHGGGCHHHHHHHHHSTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSSSCCCHHH
T ss_pred             cCChhhhHHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEccHHHHHHHHHHHHHhCCeeEEeccCCcccchHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-CCCeEEEecCCCHHHHHHHHHHHccCCCCC--CceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhH
Q psy7896          81 AAAIAA-RGVAVYAWKGETDEEYVWCIEQTLVFPDGK--PLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNL  157 (718)
Q Consensus        81 aaal~~-~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~--~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~  157 (718)
                      ||||++ .||+||||||||.+|||||++++|.|+|+.  +||||+|||||||+++|++...                .|+
T Consensus        85 AAAl~~~~gi~VfAwkGet~eey~~~i~~~L~~~dg~~~~P~~IlDDGgDlt~~vh~g~~~----------------E~l  148 (313)
T d1v8ba2          85 AAAVSTLENVTVFAWKNETLEEYWWCVESALTWGDGDDNGPDMIVDDGGDATLLVHKGVEY----------------EKL  148 (313)
T ss_dssp             HHHHTTSTTEEEECCTTCCHHHHHHHHHHHHCCSSSSSCSCSEEEESSSHHHHHHHHHHHH----------------HHH
T ss_pred             HHHhhccCCceEEEecCCCHHHHHHHHHHHHhcCCCCCCCCcEEeehhHHHHHHHHhcchh----------------ccc
Confidence            999987 799999999999999999999999998763  5699999999999999975421                244


Q ss_pred             HHHHhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEec
Q psy7896         158 YKMFKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVN  237 (718)
Q Consensus       158 ~~~~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~  237 (718)
                      |.  +.+.+..|..++|++.. ....++.  +.+ ...+.+|+...+++.|++|+|++||+||++|.++|+|.||+++||
T Consensus       149 ~~--~~~~lp~p~~~~n~~~~-~~~~~lk--~~~-~~~~~~~~~~~~~i~GvsEETTTGV~RL~~m~~~g~L~fPainVN  222 (313)
T d1v8ba2         149 YE--EKNILPDPEKAKNEEER-CFLTLLK--NSI-LKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVN  222 (313)
T ss_dssp             HH--HHCCCCCGGGCSSHHHH-HHHHHHH--HHH-TTCTTHHHHHHTTCCEEEECSHHHHHHHHHHHHTTCCCSEEEECT
T ss_pred             cc--cccccCCCCCCCCHHHH-HHHHHHH--HHH-hhCcHHHHHhhhcEEEEeCCCCccHHhHHHHHHcCcceeeeEecC
Confidence            43  56677666655555311 1100010  011 112367889999999999999999999999999999999999999


Q ss_pred             CCccccc
Q psy7896         238 DSVTKSK  244 (718)
Q Consensus       238 ds~~K~~  244 (718)
                      |+++|++
T Consensus       223 DsvtK~~  229 (313)
T d1v8ba2         223 DAVTKQK  229 (313)
T ss_dssp             TSHHHHT
T ss_pred             cccCHHH
Confidence            9998875

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-88  Score=690.77  Aligned_cols=180  Identities=79%  Similarity=1.220  Sum_probs=173.2

Q ss_pred             CCCccchHhhhhhHHHHHhhCchHHHHHHHhccCCCCCCcEEEEEeeccHhHHHHHHHHHHCCCEEEEeecCCCCCHHHH
Q psy7896           1 MADIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQDHA   80 (718)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~mp~l~~~~~~~~~~~pl~g~ri~~~lh~~~~ta~l~~~L~~~Ga~v~~~~~n~~stqd~~   80 (718)
                      |+||+||++|+++|+||++|||+|+++|++|+++|||+|+||++|+|||+|||+|++||+++||+|+||+|||+||||||
T Consensus         7 VkD~sLa~~G~~~IewA~~~MPvL~~lr~~~~~~kPl~G~rI~~clHlt~kTA~L~~tL~~~GA~V~~~~~Np~STQDdv   86 (267)
T d1li4a2           7 VADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVTLGAEVQWSSCNIFSTQDHA   86 (267)
T ss_dssp             ESCGGGHHHHHHHHHHHHTTCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCCCHHH
T ss_pred             ccChhhhHHhHHHHHHHHHHCHHHHHHHHHhcccCCCCCCEEEEEEeehHHHHHHHHHHHHccCcEEEeccCcccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCeEEEecCCCHHHHHHHHHHHccCCCCCCceeEecCcchhHHHHHhhChhhhhcccCCCcccchhHHhHHHH
Q psy7896          81 AAAIAARGVAVYAWKGETDEEYVWCIEQTLVFPDGKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKM  160 (718)
Q Consensus        81 aaal~~~gv~v~a~~~~~~~ey~~~~~~~~~~~~~~~~~~i~Ddggdl~~~~~~~~~~~~~~~~g~~eet~~g~~~~~~~  160 (718)
                      ||||++.||+||||+|+|.+|||||++++|+|.+++| ++|+||||||+.++|+++|+++++|+|+|||||||       
T Consensus        87 aAaL~~~Gi~VfA~~g~~~eey~~~~~~~L~~~~~~P-~liiDDG~Dl~~~~h~~~~~~~~~i~G~~EETTTG-------  158 (267)
T d1li4a2          87 AAAIAKAGIPVYAWKGETDEEYLWCIEQTLYFKDGPL-NMILDDGGDLTNLIHTKYPQLLPGIRGISEETTTG-------  158 (267)
T ss_dssp             HHHHHHTTCCEEECTTCCHHHHHHHHHTTTEETTEEC-SEEEESSSHHHHHHHHHCGGGGGGCCEEEECSHHH-------
T ss_pred             eeeeccCCceEEEecCCCHHHHHHHHHHHHhccCCCC-cEEEehhhhHHHhhhhhcccccCccEEecccccHH-------
Confidence            9999999999999999999999999999999988766 99999999999999999999999999999999999       


Q ss_pred             HhhcccCCCccccCCCCCccceeeecccccccccccccccccccccccccccchhhhhhhHHHHhcCCccceEEEecCCc
Q psy7896         161 FKENKLGVPAINVNDSVTKPLNMILDDGGDLTNLVHEKYPQFLSEIRGISEETTTGVHNLYKMFKENKLGVPAINVNDSV  240 (718)
Q Consensus       161 ~~~~~l~~p~~~~~~s~~k~~~~~~d~ggyf~~~~~~~~~~~~~~~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~  240 (718)
                                                                              |+||++|.++|+|+||||+||||+
T Consensus       159 --------------------------------------------------------V~RL~am~~~g~L~fP~i~VNDa~  182 (267)
T d1li4a2         159 --------------------------------------------------------VHNLYKMMANGILKVPAINVNDSV  182 (267)
T ss_dssp             --------------------------------------------------------HHHHHHHHHTTCCCSEEEECTTSH
T ss_pred             --------------------------------------------------------HHHHHHHHHCCCCCcceEECCCcc
Confidence                                                                    678888888888999999999998


Q ss_pred             cccc
Q psy7896         241 TKSK  244 (718)
Q Consensus       241 ~K~~  244 (718)
                      +|++
T Consensus       183 tK~~  186 (267)
T d1li4a2         183 TKSK  186 (267)
T ss_dssp             HHHT
T ss_pred             hhhh
Confidence            8764

>d1v8ba2 c.23.12.3 (A:4-234,A:398-479) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=4e-48  Score=404.57  Aligned_cols=217  Identities=49%  Similarity=0.875  Sum_probs=207.8

Q ss_pred             cccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCch
Q psy7896         498 VHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFSTQ  577 (718)
Q Consensus       498 ~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplstq  577 (718)
                      .+.|||++|+++|+++|+||+++||+||+||++|..+|||+|+||++|||||+|||+|++||+++||+|+||||||||||
T Consensus         2 ~s~VkDisLA~~G~~~IewAe~eMP~L~alr~~~~~~kPlkG~rIagcLHmt~qTAvLietL~~~GAeV~~~scNp~STQ   81 (313)
T d1v8ba2           2 KSKVKDISLAPFGKMQMEISENEMPGLMRIREEYGKDQPLKNAKITGCLHMTVECALLIETLQKLGAQIRWCSCNIYSTA   81 (313)
T ss_dssp             CCBCSCGGGHHHHHHHHHHHGGGCHHHHHHHHHSTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             CCccCChhhhHHhHHHHHHHHHHCHHHHHHHHHHhccCCCCCCEEEEEEccHHHHHHHHHHHHHhCCeeEEeccCCcccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-cCceEEEeeCCChHHHHHHHHHHhhcceecC----CCCeEEEecCCcccccccc----------------
Q psy7896         578 DHAAAAIAA-RGVAVYAWKGETDEEYVWCIEQTLVDRYTLP----NGNHIILLAEGRLVNLGCA----------------  636 (718)
Q Consensus       578 d~vaaal~~-~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~----~~~~~i~ddggdl~~~~~~----------------  636 (718)
                      |||||||++ .||+||||||||.||||||++++|+    |+    .+||||+|||||||++.-.                
T Consensus        82 D~vAAAl~~~~gi~VfAwkGet~eey~~~i~~~L~----~~dg~~~~P~~IlDDGgDlt~~vh~g~~~E~l~~~~~~lp~  157 (313)
T d1v8ba2          82 DYAAAAVSTLENVTVFAWKNETLEEYWWCVESALT----WGDGDDNGPDMIVDDGGDATLLVHKGVEYEKLYEEKNILPD  157 (313)
T ss_dssp             HHHHHHHTTSTTEEEECCTTCCHHHHHHHHHHHHC----CSSSSSCSCSEEEESSSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             hHHHHHhhccCCceEEEecCCCHHHHHHHHHHHHh----cCCCCCCCCcEEeehhHHHHHHHHhcchhccccccccccCC
Confidence            999999997 7999999999999999999999994    43    3799999999999887630                


Q ss_pred             ------------------------------------------------------------------------CCCCccee
Q psy7896         637 ------------------------------------------------------------------------MGHPSFVM  644 (718)
Q Consensus       637 ------------------------------------------------------------------------~~~~~~~~  644 (718)
                                                                                              -|||||||
T Consensus       158 p~~~~n~~~~~~~~~lk~~~~~~~~~~~~~~~~i~GvsEETTTGV~RL~~m~~~g~L~fPainVNDsvtK~~F~~P~~vM  237 (313)
T d1v8ba2         158 PEKAKNEEERCFLTLLKNSILKNPKKWTNIAKKIIGVSEETTTGVLRLKKMDKQNELLFTAINVNDAVTKQKYDHPAFVM  237 (313)
T ss_dssp             GGGCSSHHHHHHHHHHHHHHTTCTTHHHHHHTTCCEEEECSHHHHHHHHHHHHTTCCCSEEEECTTSHHHHTTHSCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHhhCcHHHHHhhhcEEEEeCCCCccHHhHHHHHHcCcceeeeEecCcccCHHHhCCcHHHH
Confidence                                                                                    28999999


Q ss_pred             chhHHhHHHHHHHHHhcc--CCCCCceeeCChhhHHHHHHHhhhhcCcccccCCHHHHhhcCCCCCCCCCCCCCCC
Q psy7896         645 SNSFTNQVLAQIELWTKH--SQYPVGVYMLPKKLDEEVAALHLEHLGVKLTKLTEDQAKYLGLPIEGPYKPDHYRY  718 (718)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (718)
                      |+||+||+|||++||.++  .+|+++||.||++|||+||++||++||++||+||++|++|||+|.+|||||+||||
T Consensus       238 d~SFanQ~La~~~l~~~~~~~~~~~~Vy~lP~~lDe~vA~l~L~~~g~~id~Lt~~Q~~Yl~~~~~gp~k~~~y~y  313 (313)
T d1v8ba2         238 SFSFCNQTFAQLDLWQNKDTNKYENKVYLLPKHLDEKVALYHLKKLNASLTELDDNQCQFLGVNKSGPFKSNEYRY  313 (313)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSSSCCSSEECCCHHHHHHHHHHHHGGGTCCCCCCCHHHHHHHTCCTTSCCSCTTCCC
T ss_pred             HHHHHhHHHHHHHHHhcCcccccCCcEEECChHHHHHHHHHHHHhcCCEeccCCHHHHHHCCCCCCCCCCCCCCCC
Confidence            999999999999999877  57999999999999999999999999999999999999999999999999999999

>d1li4a2 c.23.12.3 (A:3-189,A:353-432) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: S-adenosylhomocystein hydrolase
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-47  Score=386.28  Aligned_cols=219  Identities=70%  Similarity=1.081  Sum_probs=209.4

Q ss_pred             ccccccchhhcccchhhhHHHHhcChHHHHHHHHhcccccCCceEEEeeecchhhHHHHHHHHHHcCCeEEeeccCcCCc
Q psy7896         497 LVHLSTDIKLAEWGRKTIIMAENEMPGLMALRRKYGAQKILKGARIAGCLHMTVQTAVLIETLLELGAEVQWSSCNIFST  576 (718)
Q Consensus       497 ~~Y~i~D~~La~~G~~kI~wa~~~MP~L~~Lr~~f~~~kpl~G~~i~~~lh~~~~Ta~L~~~l~~~GA~v~~~~~nplst  576 (718)
                      ..|.|||++|+++|+++|+||++|||+|++||++|..+|||+|+||++|||||+|||+|+++|+++||+|+||+||||||
T Consensus         3 ~~y~VkD~sLa~~G~~~IewA~~~MPvL~~lr~~~~~~kPl~G~rI~~clHlt~kTA~L~~tL~~~GA~V~~~~~Np~ST   82 (267)
T d1li4a2           3 LPYKVADIGLAAWGRKALDIAENEMPGLMRMRERYSASKPLKGARIAGCLHMTVETAVLIETLVTLGAEVQWSSCNIFST   82 (267)
T ss_dssp             CSCEESCGGGHHHHHHHHHHHHTTCHHHHHHHHHHTTTCTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEEEECSSTTCC
T ss_pred             CCccccChhhhHHhHHHHHHHHHHCHHHHHHHHHhcccCCCCCCEEEEEEeehHHHHHHHHHHHHccCcEEEeccCcccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEEEecCCcccccccc--------------------
Q psy7896         577 QDHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHIILLAEGRLVNLGCA--------------------  636 (718)
Q Consensus       577 qd~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddggdl~~~~~~--------------------  636 (718)
                      ||||||||++.||+||||||||.||||||++++|+   +.|.+||||+||||||+++...                    
T Consensus        83 QDdvaAaL~~~Gi~VfA~~g~~~eey~~~~~~~L~---~~~~~P~liiDDG~Dl~~~~h~~~~~~~~~i~G~~EETTTGV  159 (267)
T d1li4a2          83 QDHAAAAIAKAGIPVYAWKGETDEEYLWCIEQTLY---FKDGPLNMILDDGGDLTNLIHTKYPQLLPGIRGISEETTTGV  159 (267)
T ss_dssp             CHHHHHHHHHTTCCEEECTTCCHHHHHHHHHTTTE---ETTEECSEEEESSSHHHHHHHHHCGGGGGGCCEEEECSHHHH
T ss_pred             cccceeeeccCCceEEEecCCCHHHHHHHHHHHHh---ccCCCCcEEEehhhhHHHhhhhhcccccCccEEecccccHHH
Confidence            99999999999999999999999999999999994   2245789999999998875521                    


Q ss_pred             --------------------------CCCCcceechhHHhHHHHHHHHHhccCCCCCceeeCChhhHHHHHHHhhhhcCc
Q psy7896         637 --------------------------MGHPSFVMSNSFTNQVLAQIELWTKHSQYPVGVYMLPKKLDEEVAALHLEHLGV  690 (718)
Q Consensus       637 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  690 (718)
                                                .=||++||++||+||+|+|++||+++++|+++||.||+++||+||++||++||+
T Consensus       160 ~RL~am~~~g~L~fP~i~VNDa~tK~~F~~~~~~~~Sf~~q~la~~~L~~~~~~~~~~Vy~lP~~lDe~VArl~L~~lgv  239 (267)
T d1li4a2         160 HNLYKMMANGILKVPAINVNDSVTKSKFHPSFVMSNSFTNQVMAQIELWTHPDKYPVGVHFLPKKLDEAVAEAHLGKLNV  239 (267)
T ss_dssp             HHHHHHHHTTCCCSEEEECTTSHHHHTTSCHHHHHHHHHHHHHHHHHHHHCGGGCCSEEECCCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHCCCCCcceEECCCcchhhhcchhHHHHHHHHHHHHHHHHHHhCccccCCcEEECChHHHHHHHHHHHHhCCc
Confidence                                      238999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCHHHHhhcCCCCCCCCCCCCCCC
Q psy7896         691 KLTKLTEDQAKYLGLPIEGPYKPDHYRY  718 (718)
Q Consensus       691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  718 (718)
                      +||+||++|++|||+|.+|||||+||||
T Consensus       240 ~id~Lt~~Q~~Ylgv~~~Gp~k~~~yry  267 (267)
T d1li4a2         240 KLTKLTEKQAQYLGMSCDGPFKPDHYRY  267 (267)
T ss_dssp             CCCCCCHHHHHHHTSCTTSCCSCTTCCC
T ss_pred             EeccCCHHHHHhCCCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=100.00  E-value=3.4e-37  Score=295.81  Aligned_cols=135  Identities=56%  Similarity=0.952  Sum_probs=128.6

Q ss_pred             ccccchhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHH
Q psy7896         247 NLYGCRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEH  326 (718)
Q Consensus       247 ~~~G~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~  326 (718)
                      |+|||+||++|+|+|+|+++++||+++|+|||+||+++|                                         
T Consensus         1 N~yg~g~S~~d~i~r~t~~~laGk~vvV~GYG~vGrG~A-----------------------------------------   39 (163)
T d1v8ba1           1 NVYGCRHSLPDGLMRATDFLISGKIVVICGYGDVGKGCA-----------------------------------------   39 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCTTSEEEEECCSHHHHHHH-----------------------------------------
T ss_pred             CccccchhHHHHHHHHhCceecCCEEEEecccccchhHH-----------------------------------------
Confidence            789999999999999999999999999999999999888                                         


Q ss_pred             hcccccccchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcE
Q psy7896         327 LGVKLTKLTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGI  406 (718)
Q Consensus       327 lgv~~~~~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDi  406 (718)
                                                            ++|+++|++|+|+|+||.++++|.++||++++++|+++.+|+
T Consensus        40 --------------------------------------~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi   81 (163)
T d1v8ba1          40 --------------------------------------SSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDF   81 (163)
T ss_dssp             --------------------------------------HHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSE
T ss_pred             --------------------------------------HHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcE
Confidence                                                  889999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc-cccceeeecCCc
Q psy7896         407 FVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK-NAVEKVNVKPQV  460 (718)
Q Consensus       407 Ii~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~-~~l~~~~v~P~V  460 (718)
                      |+++||++++|+.++|.+||+|+||+|+||||+|||+++|++ ...++.+++|+|
T Consensus        82 ~vTaTGn~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~~~~~~~~~vrp~V  136 (163)
T d1v8ba1          82 FITCTGNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVKPQV  136 (163)
T ss_dssp             EEECCSSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEETTE
T ss_pred             EEEcCCCCccccHHHHHHhhCCeEEEeccccchhhhhHHHHhCcCcceeeecCCc
Confidence            999999999999999999999999999999999999999876 356778899999

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-36  Score=288.03  Aligned_cols=114  Identities=82%  Similarity=1.292  Sum_probs=103.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                      .||+|+|+|||.||+.+|+++++|||+|+++|+||.+++++.++||++.+++++++.+|+|+++||++++|+.++|++||
T Consensus        23 ~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTGn~~vI~~eh~~~MK  102 (163)
T d1li4a1          23 AGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTGCIDIILGRHFEQMK  102 (163)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSSCSCSBCHHHHTTCC
T ss_pred             cCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCCCccchhHHHHHhcc
Confidence            34455555555566666699999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEcCCCCccccHHHHhccccceeeecCCc
Q psy7896         427 DDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQV  460 (718)
Q Consensus       427 ~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V  460 (718)
                      +|++|+|+||+++|||+++|.+...++.+++|+|
T Consensus       103 dgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v  136 (163)
T d1li4a1         103 DDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQV  136 (163)
T ss_dssp             TTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTE
T ss_pred             CCeEEEEeccccceecHHHHhhccceeeeecCCe
Confidence            9999999999999999999998777788899988

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.85  E-value=4.6e-22  Score=196.56  Aligned_cols=150  Identities=16%  Similarity=0.208  Sum_probs=110.5

Q ss_pred             hhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCC
Q psy7896         339 AKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCK  414 (718)
Q Consensus       339 ~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~  414 (718)
                      ....|.+|.||||||||+|+||+.+|+++++|||+|++||+.+..  .....++...++++++++||+|+++    ..|+
T Consensus        34 ~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~--~~~~~~~~~~~l~~~l~~sDii~~~~plt~~T~  111 (197)
T d1j4aa1          34 APTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNP--ELEKKGYYVDSLDDLYKQADVISLHVPDVPANV  111 (197)
T ss_dssp             TTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCBCSCHHHHHHHCSEEEECSCCCGGGT
T ss_pred             CCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccc--ccccceeeeccccccccccccccccCCcccccc
Confidence            446689999999999999999999999999999999999765543  2334577888999999999999986    4589


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhccccccc
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYS  485 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~n  485 (718)
                      ++|+++.|+.||++++|||+|||. -+|.++|.+.         ++|+++.+|...-........  ++......+..+|
T Consensus       112 ~li~~~~l~~mk~~a~lIN~sRG~-ivde~aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~--p~~~~~~L~~~~n  188 (197)
T d1j4aa1         112 HMINDESIAKMKQDVVIVNVSRGP-LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEF--PDARLADLIARPN  188 (197)
T ss_dssp             TCBSHHHHHHSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCC--SCHHHHHHHHCTT
T ss_pred             ccccHHHHhhhCCccEEEecCchh-hhhhHHHHHHHhcccchheeeeccccCCcccccccccccC--CccchhhhhcCCC
Confidence            999999999999999999999996 4777665542         245555555442111110000  0111111233479


Q ss_pred             ccccccCC
Q psy7896         486 LVNTIHEA  493 (718)
Q Consensus       486 lv~~~h~~  493 (718)
                      ++.|||.+
T Consensus       189 viiTPHiA  196 (197)
T d1j4aa1         189 VLVTPKTA  196 (197)
T ss_dssp             EEECSSCT
T ss_pred             EEeCcccC
Confidence            99999975

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.85  E-value=1.6e-21  Score=191.95  Aligned_cols=139  Identities=17%  Similarity=0.155  Sum_probs=105.5

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDI  416 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~l  416 (718)
                      ..+.+|.||||||||+|+||+.+|+++++|||+|++||+.+............+.+++++++.||+|+++    ..|+++
T Consensus        42 ~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~l  121 (193)
T d1mx3a1          42 SGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHL  121 (193)
T ss_dssp             TTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTS
T ss_pred             cCceeeeCceEEEeccccccccceeeeeccccceeeccCcccccchhhhccccccchhhccccCCEEEEeecccccchhh
Confidence            4589999999999999999999999999999999999876554333222233456899999999999986    458999


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhccccccccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLV  487 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv  487 (718)
                      |+++.|++||++++|||+|||. -+|.++|.+.         ++|++..+|..         ..+     ...+-.+|++
T Consensus       122 i~~~~l~~mk~~a~lIN~sRG~-ivde~aL~~aL~~~~i~~a~lDV~~~EP~~---------~~~-----~~l~~~~nvi  186 (193)
T d1mx3a1         122 INDFTVKQMRQGAFLVNTARGG-LVDEKALAQALKEGRIRGAALDVHESEPFS---------FSQ-----GPLKDAPNLI  186 (193)
T ss_dssp             BSHHHHTTSCTTEEEEECSCTT-SBCHHHHHHHHHHTSEEEEEESCCSSSSCC---------TTS-----STTTTCSSEE
T ss_pred             hhHHHHhccCCCCeEEecCCce-EEcHHHHHHHHHcCCceEEEEEcCCCCCCC---------CCc-----hhHHcCCCEE
Confidence            9999999999999999999996 4777666542         23555544422         000     0112237899


Q ss_pred             ccccCCc
Q psy7896         488 NTIHEAP  494 (718)
Q Consensus       488 ~~~h~~a  494 (718)
                      .|||.++
T Consensus       187 ~TPHiA~  193 (193)
T d1mx3a1         187 CTPHAAW  193 (193)
T ss_dssp             ECSSCTT
T ss_pred             EcCCcCc
Confidence            9999763

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.84  E-value=5.7e-21  Score=187.68  Aligned_cols=138  Identities=13%  Similarity=0.138  Sum_probs=107.4

Q ss_pred             hhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhhcCceecCHHHHhccCcEEEEc----CCCC
Q psy7896         340 KYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASMEGYEVTTMEEAAKEGGIFVTT----TGCK  414 (718)
Q Consensus       340 ~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~~G~~v~~Leell~~aDiIi~a----tgt~  414 (718)
                      .+.+.+++||||||||+|+||+.+|+++++|||+|+++|+.+.... .....+....++++++++||+|+++    ..|+
T Consensus        39 ~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~  118 (191)
T d1gdha1          39 ELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETR  118 (191)
T ss_dssp             TTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTT
T ss_pred             ccccceecccceEEeecccchHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHh
Confidence            4568999999999999999999999999999999999987654332 2233455667899999999999986    4689


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhccccccc
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYS  485 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~n  485 (718)
                      ++|+++.|+.||+|++|||+|||. -+|.++|.+.         ++|+++.+|..          .+++      +-.+|
T Consensus       119 ~li~~~~l~~mk~~a~lIN~sRG~-ivde~aL~~aL~~g~i~~a~lDV~~~EP~~----------~~~l------~~~~n  181 (191)
T d1gdha1         119 YFFNKATIKSLPQGAIVVNTARGD-LVDNELVVAALEAGRLAYAGFDVFAGEPNI----------NEGY------YDLPN  181 (191)
T ss_dssp             TCBSHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHHHHTSEEEEEESCCTTTTSC----------CTTG------GGCTT
T ss_pred             heecHHHhhCcCCccEEEecCCcc-chhhHHHHHHHHcCCceEEEEECCCCCCCC----------CchH------HcCCC
Confidence            999999999999999999999996 5777666542         24554444422          1112      22378


Q ss_pred             ccccccCCc
Q psy7896         486 LVNTIHEAP  494 (718)
Q Consensus       486 lv~~~h~~a  494 (718)
                      ++.|||.++
T Consensus       182 vi~TPHias  190 (191)
T d1gdha1         182 TFLFPHIGS  190 (191)
T ss_dssp             EEECSSCTT
T ss_pred             EEECCcccc
Confidence            999999775

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.83  E-value=9.5e-21  Score=184.84  Aligned_cols=146  Identities=16%  Similarity=0.174  Sum_probs=108.2

Q ss_pred             hhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCC
Q psy7896         339 AKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCK  414 (718)
Q Consensus       339 ~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~  414 (718)
                      ..+.+.++.||++||+|+|+||+.+|+++++|||+|+++|+.+.+. .....++...+++|++++||+|+++    ..|+
T Consensus        35 ~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~-~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~  113 (184)
T d1ygya1          35 SSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA-RAAQLGIELLSLDDLLARADFISVHLPKTPETA  113 (184)
T ss_dssp             GGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH-HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTT
T ss_pred             cccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh-HHhhcCceeccHHHHHhhCCEEEEcCCCCchhh
Confidence            3456889999999999999999999999999999999998765433 2334577888999999999999986    4689


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEA  493 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~  493 (718)
                      ++|+++.|++||++++|||+|||. -+|.++|.+..-+.......+||++.|.. ...      ..+-.+|++.|||.+
T Consensus       114 ~lin~~~l~~mk~~a~lIN~sRG~-iVde~aL~~aL~~~~i~~a~lDV~~~EP~-~~~------~l~~~~nviiTPHIG  184 (184)
T d1ygya1         114 GLIDKEALAKTKPGVIIVNAARGG-LVDEAALADAITGGHVRAAGLDVFATEPC-TDS------PLFELAQVVVTPHLG  184 (184)
T ss_dssp             TCBCHHHHTTSCTTEEEEECSCTT-SBCHHHHHHHHHTSSEEEEEESSCSSSSC-SCC------GGGGCTTEEECSSCS
T ss_pred             hhhhHHHHhhhCCCceEEEecchh-hhhhHHHHHHHhcCcEeEEEEeCCCCCCC-CCc------hHhcCCCEEECCCCC
Confidence            999999999999999999999996 47777666531111111122333333321 111      122237899999964

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.82  E-value=1.5e-20  Score=185.67  Aligned_cols=105  Identities=20%  Similarity=0.315  Sum_probs=90.9

Q ss_pred             hhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCC
Q psy7896         340 KYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKD  415 (718)
Q Consensus       340 ~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~  415 (718)
                      .+.+.+|.||||||||+|+||+.+|++|++|||+|++||+.+...   ....+...+++++++.||+|+++    ..|++
T Consensus        37 ~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~---~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~  113 (199)
T d1dxya1          37 TFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG---DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTH  113 (199)
T ss_dssp             CCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS---CCTTCEECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             CcccccccceeeeeeecccccccccccccccceeeeccCCccchh---hhcchhHHHHHHHHHhcccceeeecccccccc
Confidence            356899999999999999999999999999999999998765432   22356778999999999999986    35899


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      +|+++.|++||++++|||+|||. -+|.++|.+
T Consensus       114 li~~~~l~~mk~~a~lIN~aRG~-vvde~aL~~  145 (199)
T d1dxya1         114 IINEAAFNLMKPGAIVINTARPN-LIDTQAMLS  145 (199)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTT-SBCHHHHHH
T ss_pred             cccHHHhhccCCceEEEecccHh-hhhhHHHHH
Confidence            99999999999999999999996 478776655

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.81  E-value=6.7e-20  Score=179.05  Aligned_cols=146  Identities=10%  Similarity=-0.083  Sum_probs=105.3

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCceecCHHHHhccCcEEEEc----CCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYEVTTMEEAAKEGGIFVTT----TGCKD  415 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~v~~Leell~~aDiIi~a----tgt~~  415 (718)
                      ..+.++.|++|||||+|+||+.+|++|++|||+|.++|+.+........ ......++++++++||+|+++    ..|++
T Consensus        37 ~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~  116 (188)
T d2naca1          37 SHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEH  116 (188)
T ss_dssp             TTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTT
T ss_pred             CcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchh
Confidence            3478999999999999999999999999999999999876554333222 334567899999999999986    46899


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHHHHhhhcccccccccccccCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLVNTIHEA  493 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv~~~h~~  493 (718)
                      +|+++.|+.||+|++|||+|||. -+|.++|.+..-+.......+||++.|..-      .....+-.+|++.|||.+
T Consensus       117 li~~~~l~~mk~ga~lIN~aRG~-ivd~~aL~~aL~~g~i~ga~lDV~~~EP~~------~~~~l~~~~nv~~TPHia  187 (188)
T d2naca1         117 MINDETLKLFKRGAYIVNTARGK-LCDRDAVARALESGRLAGYAGDVWFPQPAP------KDHPWRTMPYNGMTPHIS  187 (188)
T ss_dssp             CBSHHHHTTSCTTEEEEECSCGG-GBCHHHHHHHHHTTSEEEEEESCCSSSSCC------TTCGGGTSTTBCCCCSCT
T ss_pred             hhHHHHHHhCCCCCEEEecCchh-hhhHHHHHHHHhCCCceeEEEeCCCCCCCC------CCChHHcCCCeEEccccC
Confidence            99999999999999999999996 578776665311111111223333333111      111122347888999964

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.80  E-value=4e-20  Score=180.13  Aligned_cols=141  Identities=18%  Similarity=0.213  Sum_probs=106.1

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDI  416 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~l  416 (718)
                      ....++.||||||||+|+||+.+|+++++|||+|+++|+++...     ......+++|++++||+|+++    ..|+++
T Consensus        35 ~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~-----~~~~~~~l~ell~~sDiv~~~~pl~~~t~~l  109 (181)
T d1qp8a1          35 VEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG-----PWRFTNSLEEALREARAAVCALPLNKHTRGL  109 (181)
T ss_dssp             SCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS-----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTC
T ss_pred             CCCCcccCceEEEeccccccccceeeeecccccccccccccccc-----ceeeeechhhhhhccchhhcccccccccccc
Confidence            33457999999999999999999999999999999998876532     122346899999999999986    468999


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhccccceeeecCCcccCccccchhhHH-HHhhhcccccccccccccCC
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKNAVEKVNVKPQVSPTSRTKHLTTEA-LLATCNSLFKYSLVNTIHEA  493 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~~l~~~~v~P~V~v~s~e~~~~~ea-l~n~~~~~~~~nlv~~~h~~  493 (718)
                      |+++.|++||++++|||+|||. -+|.++|.+..-+........||++.+.+...+. +.+      .+|++.|||.+
T Consensus       110 i~~~~l~~mk~~ailIN~~RG~-ivd~~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~------~~nvi~TPHia  180 (181)
T d1qp8a1         110 VKYQHLALMAEDAVFVNVGRAE-VLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFS------LPNVVATPWVA  180 (181)
T ss_dssp             BCHHHHTTSCTTCEEEECSCGG-GBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHT------STTEEECCSCS
T ss_pred             cccceeeeccccceEEeccccc-cccchhhhhhcccCcEEEEEEecCCCCCCCCCCChHHc------CCCEEeccccC
Confidence            9999999999999999999996 4787776653111111123455665554444433 322      27899999964

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=7.8e-20  Score=178.57  Aligned_cols=138  Identities=15%  Similarity=0.180  Sum_probs=99.7

Q ss_pred             hhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEc----CCCCCC
Q psy7896         341 YLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTT----TGCKDI  416 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~a----tgt~~l  416 (718)
                      ..+.++.|++|||||+|+||+.+|+++++|||+|+++|+++....   .....+.+++|++++||||+++    ..|+++
T Consensus        37 ~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~~---~~~~~~~~l~ell~~sDii~i~~plt~~T~~l  113 (188)
T d1sc6a1          37 AGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPL---GNATQVQHLSDLLNMSDVVSLHVPENPSTKNM  113 (188)
T ss_dssp             --CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCCC---TTCEECSCHHHHHHHCSEEEECCCSSTTTTTC
T ss_pred             cccccccceEEEEeecccchhhhhhhcccccceEeeccccccchh---hhhhhhhhHHHHHhhccceeecccCCcchhhh
Confidence            347899999999999999999999999999999999987654321   2344567899999999999986    458899


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCccccHHHHhcc---------ccceeeecCCcccCccccchhhHHHHhhhccccccccc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDKN---------AVEKVNVKPQVSPTSRTKHLTTEALLATCNSLFKYSLV  487 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~~---------~l~~~~v~P~V~v~s~e~~~~~eal~n~~~~~~~~nlv  487 (718)
                      |+++.|++||++++|||+|||. -+|.++|.+.         ++|+++.+|...-.     .+..++      +-.+|++
T Consensus       114 i~~~~l~~mk~~a~lIN~aRG~-lvde~aL~~aL~~~~~~~a~lDV~~~EP~~~~~-----~~~~~l------~~~~nv~  181 (188)
T d1sc6a1         114 MGAKEISLMKPGSLLINASRGT-VVDIPALADALASKHLAGAAIDVFPTEPATNSD-----PFTSPL------AEFDNVL  181 (188)
T ss_dssp             BCHHHHHHSCTTEEEEECSCSS-SBCHHHHHHHHHTTSEEEEEEEC---------C-----TTTGGG------TTCTTEE
T ss_pred             ccHHHHhhCCCCCEEEEcCcHH-hhhhHHHHHHHHcCCceEEEEecCCCCCCCcCC-----ccchhH------hcCCCEE
Confidence            9999999999999999999996 4776666542         24555555543100     011111      2227899


Q ss_pred             ccccCC
Q psy7896         488 NTIHEA  493 (718)
Q Consensus       488 ~~~h~~  493 (718)
                      .|||.+
T Consensus       182 ~TPHia  187 (188)
T d1sc6a1         182 LTPHIG  187 (188)
T ss_dssp             EECCCS
T ss_pred             EcCCcC
Confidence            999964

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.70  E-value=4.6e-08  Score=94.23  Aligned_cols=91  Identities=18%  Similarity=0.261  Sum_probs=72.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec------------------------------
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT------------------------------  395 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~------------------------------  395 (718)
                      +..-+|.|||.|.+|...++.++++|++|.++|.++.+..+....+-.+.                              
T Consensus        27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~  106 (183)
T d1l7da1          27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE  106 (183)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred             cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence            56679999999999999999999999999999998875433333332211                              


Q ss_pred             CHHHHhccCcEEEEc---CC--CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         396 TMEEAAKEGGIFVTT---TG--CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       396 ~Leell~~aDiIi~a---tg--t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .+.+.++++|+||++   +|  .+.+|+++.++.||+|+++|+++-
T Consensus       107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEee
Confidence            134557899999986   33  567999999999999999999875

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.67  E-value=2.5e-08  Score=94.96  Aligned_cols=91  Identities=18%  Similarity=0.253  Sum_probs=73.4

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH--Hhhc-Ccee-----cCHHHHhccCcEEEEc---C--C
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ--ASME-GYEV-----TTMEEAAKEGGIFVTT---T--G  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~--a~~~-G~~v-----~~Leell~~aDiIi~a---t--g  412 (718)
                      ....+|.|||.|..|...++.++++|++|.++|.++.+..+  .... ..+.     ..+++.++++|+||.+   +  .
T Consensus        30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~  109 (168)
T d1pjca1          30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR  109 (168)
T ss_dssp             BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred             CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence            56789999999999999999999999999999998765322  1111 1111     2477889999999986   3  3


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .+.+|+++.++.||+|+++|+++-
T Consensus       110 aP~lIt~~mv~~Mk~GSVIVDvai  133 (168)
T d1pjca1         110 APILVPASLVEQMRTGSVIVDVAV  133 (168)
T ss_dssp             CCCCBCHHHHTTSCTTCEEEETTC
T ss_pred             cCeeecHHHHhhcCCCcEEEEeec
Confidence            578999999999999999999875

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.65  E-value=3.5e-08  Score=96.53  Aligned_cols=86  Identities=20%  Similarity=0.269  Sum_probs=74.6

Q ss_pred             hcc-cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhc-cCcEEEEcCCCCCCcCH
Q psy7896         342 LDI-MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK-EGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       342 ~g~-eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~-~aDiIi~atgt~~lI~~  419 (718)
                      .|. .|+||||+|.|+|++|+.+|+.|..+|++|+++|.|+.........|....+.++++. +|||++.|. ..+.|+.
T Consensus        20 ~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-~~~~I~~   98 (201)
T d1c1da1          20 RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-MGGVITT   98 (201)
T ss_dssp             TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-CSCCBCH
T ss_pred             hCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-ccccccH
Confidence            344 6999999999999999999999999999999999998766566667888899999986 799999874 3468999


Q ss_pred             HHHhcCCCC
Q psy7896         420 EHFLQMRDD  428 (718)
Q Consensus       420 e~l~~MK~g  428 (718)
                      +...+|+..
T Consensus        99 ~~a~~i~ak  107 (201)
T d1c1da1          99 EVARTLDCS  107 (201)
T ss_dssp             HHHHHCCCS
T ss_pred             HHHhhhhhh
Confidence            999999864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.58  E-value=1.8e-07  Score=86.99  Aligned_cols=89  Identities=18%  Similarity=0.146  Sum_probs=69.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc--eecCHHHHhccCcEEEEcCCCC---CCcCHHHHh
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY--EVTTMEEAAKEGGIFVTTTGCK---DIIRGEHFL  423 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~--~v~~Leell~~aDiIi~atgt~---~lI~~e~l~  423 (718)
                      ++|||||+|++|..+|+.|+..|.+|++||+++.....+...|.  ...+..++++++|+|++++...   .++ .+...
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~~~~~~vl-~~l~~   79 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTL-EKLIP   79 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCHHHHHHHH-HHHGG
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcHhhhhhhh-hhhhh
Confidence            47999999999999999999999999999998765544555553  3445557889999999986532   233 34567


Q ss_pred             cCCCCeEEEEcCCCC
Q psy7896         424 QMRDDAIVCNIGHFD  438 (718)
Q Consensus       424 ~MK~gAiLIN~GRgd  438 (718)
                      .+++++++++++...
T Consensus        80 ~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          80 HLSPTAIVTDVASVK   94 (165)
T ss_dssp             GSCTTCEEEECCSCC
T ss_pred             hcccccceeeccccc
Confidence            789999999998754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.40  E-value=2.1e-07  Score=86.60  Aligned_cols=90  Identities=14%  Similarity=0.211  Sum_probs=71.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----Cc-C-HHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----II-R-GEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI-~-~e~  421 (718)
                      ++|||||+|++|+.+|+.|...|.+|++||+++.+..+....|.. ..+..|+++++|+|+++..+..    ++ . ...
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~   80 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI   80 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred             CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence            479999999999999999999999999999998765554445554 4579999999999999854322    22 1 235


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..+++|.++|+++-..
T Consensus        81 ~~~~~~g~iiid~sT~~   97 (161)
T d1vpda2          81 IEGAKPGTVLIDMSSIA   97 (161)
T ss_dssp             HHHCCTTCEEEECSCCC
T ss_pred             hhccCCCCEEEECCCCC
Confidence            67899999999998754

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.23  E-value=3.5e-06  Score=77.79  Aligned_cols=95  Identities=6%  Similarity=0.064  Sum_probs=72.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCcee-cCHHHHhccCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEV-TTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v-~~Leell~~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                      ++|||||+|++|+++++.+..-|.+|+++++++.+..+. ...|... .+.+++++.+|+|+++.... .+ .+.++.++
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavkp~-~~-~~vl~~l~   78 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIKPQ-LF-ETVLKPLH   78 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSCGG-GH-HHHHTTSC
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecchH-hH-HHHhhhcc
Confidence            479999999999999999999999999999887654332 2335544 57899999999999986432 22 46688899


Q ss_pred             CCeEEEEcCCCCccccHHHHhc
Q psy7896         427 DDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       427 ~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++..++++.-+   +..+.|++
T Consensus        79 ~~~~iis~~ag---i~~~~l~~   97 (152)
T d2ahra2          79 FKQPIISMAAG---ISLQRLAT   97 (152)
T ss_dssp             CCSCEEECCTT---CCHHHHHH
T ss_pred             cceeEeccccc---ccHHHHHh
Confidence            99999998775   34444544

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.22  E-value=4.5e-07  Score=79.81  Aligned_cols=91  Identities=18%  Similarity=0.165  Sum_probs=70.3

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh--cCceec--C-HHHHhccCcEEEEcCCCCCCcC
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM--EGYEVT--T-MEEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~--~G~~v~--~-Leell~~aDiIi~atgt~~lI~  418 (718)
                      .+++||+|+|||.|++|.+-|+.|..+||+|++++.++........  .+....  . -++.+..+++++.+|++. .++
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~-~~n   86 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDD-TVN   86 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCH-HHH
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCH-HHH
Confidence            4789999999999999999999999999999999877765544321  122221  1 234577889988887764 677


Q ss_pred             HHHHhcCCCCeEEEEcC
Q psy7896         419 GEHFLQMRDDAIVCNIG  435 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~G  435 (718)
                      .+....+|...++||+.
T Consensus        87 ~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          87 QRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             HHHHHHHHHTTCEEEET
T ss_pred             HHHHHHHHHcCCEEEeC
Confidence            77788889999999975

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=98.19  E-value=1.6e-06  Score=86.17  Aligned_cols=86  Identities=20%  Similarity=0.286  Sum_probs=70.5

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-hhcCceecCHHHHhc-cCcEEEEcCCCCCCcCHH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEVTTMEEAAK-EGGIFVTTTGCKDIIRGE  420 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v~~Leell~-~aDiIi~atgt~~lI~~e  420 (718)
                      ..+|.||||.|.|+|++|+.+|+.|..+|++|++.|.++...... ...|....+.++++. .|||++.|... +.|+.+
T Consensus        34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA~~-~~I~~~  112 (230)
T d1leha1          34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCALG-AVLNDF  112 (230)
T ss_dssp             SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECSCS-CCBSTT
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccccc-cccChH
Confidence            567999999999999999999999999999999998877542222 235777778888865 79999998653 689999


Q ss_pred             HHhcCCCCe
Q psy7896         421 HFLQMRDDA  429 (718)
Q Consensus       421 ~l~~MK~gA  429 (718)
                      ...+++...
T Consensus       113 ~~~~l~ak~  121 (230)
T d1leha1         113 TIPQLKAKV  121 (230)
T ss_dssp             HHHHCCCSE
T ss_pred             HhhccCccE
Confidence            999998753

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.16  E-value=1.7e-06  Score=80.49  Aligned_cols=90  Identities=12%  Similarity=0.156  Sum_probs=70.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCC----Cc--CHHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKD----II--RGEH  421 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~----lI--~~e~  421 (718)
                      ++|||||+|.+|..+|++|..-|.+|.+||+++.+.......|.. ..+..|+++.+|+++++-....    ++  ....
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~   81 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL   81 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence            579999999999999999999999999999988765444445544 4579999999999998744321    11  1234


Q ss_pred             HhcCCCCeEEEEcCCCC
Q psy7896         422 FLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       422 l~~MK~gAiLIN~GRgd  438 (718)
                      +..+++|.++|+++-.+
T Consensus        82 ~~~l~~g~iiid~st~~   98 (162)
T d3cuma2          82 LAHIAPGTLVLECSTIA   98 (162)
T ss_dssp             HHHSCTTCEEEECSCCC
T ss_pred             cccCCCCCEEEECCCCC
Confidence            66789999999998864

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.6e-06  Score=80.61  Aligned_cols=80  Identities=25%  Similarity=0.376  Sum_probs=70.3

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.++.||+|.|||-+. +|+.++.+|...|++|++++...             .++.+.+++||+++++.|..++|+.
T Consensus        30 ~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t-------------~~l~~~~~~ADivI~a~G~p~~i~~   96 (166)
T d1b0aa1          30 RYNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT-------------KNLRHHVENADLLIVAVGKPGFIPG   96 (166)
T ss_dssp             HTTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC-------------SCHHHHHHHCSEEEECSCCTTCBCT
T ss_pred             HcCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc-------------chhHHHHhhhhHhhhhccCcccccc
Confidence            457789999999999999 89999999999999999986432             2567788999999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +   .+|+|+++|++|-
T Consensus        97 ~---~vk~g~vvIDvGi  110 (166)
T d1b0aa1          97 D---WIKEGAIVIDVGI  110 (166)
T ss_dssp             T---TSCTTCEEEECCC
T ss_pred             c---ccCCCcEEEecCc
Confidence            6   4599999999986

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=3.6e-06  Score=79.97  Aligned_cols=80  Identities=28%  Similarity=0.425  Sum_probs=70.5

Q ss_pred             hhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCH
Q psy7896         341 YLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRG  419 (718)
Q Consensus       341 ~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~  419 (718)
                      +.+.+++||+|.|||-+. +|+.+|.+|...|+.|++++.+.             .++.+.++++|+++.+.|..++|..
T Consensus        32 ~~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t-------------~~l~~~~~~aDivi~a~G~~~~i~~   98 (170)
T d1a4ia1          32 ETGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT-------------AHLDEEVNKGDILVVATGQPEMVKG   98 (170)
T ss_dssp             TTTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC-------------SSHHHHHTTCSEEEECCCCTTCBCG
T ss_pred             HhCcccccceEEEEecCCccchHHHHHHHhccCceEEEeccc-------------ccHHHHHhhccchhhcccccccccc
Confidence            457899999999999998 79999999999999999997543             2466778899999999999999997


Q ss_pred             HHHhcCCCCeEEEEcCC
Q psy7896         420 EHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GR  436 (718)
                      +   ..|+|+++|++|-
T Consensus        99 ~---~vk~g~iviDvgi  112 (170)
T d1a4ia1          99 E---WIKPGAIVIDCGI  112 (170)
T ss_dssp             G---GSCTTCEEEECCC
T ss_pred             c---cccCCCeEeccCc
Confidence            5   5699999999985

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.11  E-value=1.1e-06  Score=83.71  Aligned_cols=91  Identities=20%  Similarity=0.257  Sum_probs=73.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc-cHHHHhhcCceecCHHHHhccCcEEEEcCCC---CCCcCHH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI-NALQASMEGYEVTTMEEAAKEGGIFVTTTGC---KDIIRGE  420 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~-~al~a~~~G~~v~~Leell~~aDiIi~atgt---~~lI~~e  420 (718)
                      -|++|+|+|||||.-|++=|..||.-|.+|++--+... ....|..+||++.+++|+.+.+|+|.+.+..   ..+..++
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~PD~~q~~vy~~~   92 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEFQGRLYKEE   92 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHHHHHHHHHH
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecchHHHHHHHHHh
Confidence            47899999999999999999999999999998644332 3345678999999999999999999987543   2344455


Q ss_pred             HHhcCCCCeEEEEcC
Q psy7896         421 HFLQMRDDAIVCNIG  435 (718)
Q Consensus       421 ~l~~MK~gAiLIN~G  435 (718)
                      ....||+|+.|.=.-
T Consensus        93 I~p~lk~g~~L~FaH  107 (182)
T d1np3a2          93 IEPNLKKGATLAFAH  107 (182)
T ss_dssp             TGGGCCTTCEEEESC
T ss_pred             hhhhcCCCcEEEEec
Confidence            678899999888543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.11  E-value=1.5e-05  Score=72.70  Aligned_cols=82  Identities=12%  Similarity=0.157  Sum_probs=64.7

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCC--CcCHHHH
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKD--IIRGEHF  422 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~--lI~~e~l  422 (718)
                      ..=++|+||| +|.+|+.+|+.|+..|.+|.++|+++...            .++.+..+|++++++.-..  .+-.+..
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~------------~~~~~~~~~~v~~~~~~~~~~~v~~~~~   74 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAV------------AESILANADVVIVSVPINLTLETIERLK   74 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGG------------HHHHHTTCSEEEECSCGGGHHHHHHHHG
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccc------------cchhhhhccccccccchhhheeeeeccc
Confidence            3457999999 99999999999999999999999877533            3456778999998765322  2334567


Q ss_pred             hcCCCCeEEEEcCCCCc
Q psy7896         423 LQMRDDAIVCNIGHFDC  439 (718)
Q Consensus       423 ~~MK~gAiLIN~GRgd~  439 (718)
                      ..+++++++++++....
T Consensus        75 ~~~~~~~iiiD~~Svk~   91 (152)
T d2pv7a2          75 PYLTENMLLADLTSVKR   91 (152)
T ss_dssp             GGCCTTSEEEECCSCCH
T ss_pred             ccccCCceEEEecccCH
Confidence            88999999999997653

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.04  E-value=4.7e-06  Score=77.94  Aligned_cols=93  Identities=24%  Similarity=0.307  Sum_probs=71.7

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-HhhcCcee---cCHHHHhccCcEEEEcCCC-CCCcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-ASMEGYEV---TTMEEAAKEGGIFVTTTGC-KDIIR  418 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a~~~G~~v---~~Leell~~aDiIi~atgt-~~lI~  418 (718)
                      .+++++|.|||+|.+|+.+++.|...|+ +++++.+...++.. +...|..+   .++.+.+.++|+|+++|+. ..+|+
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~~ii~  100 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPHPVIH  100 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSSCCBC
T ss_pred             CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCCcccc
Confidence            6899999999999999999999999998 69999887655432 22234444   3566778899999999875 45899


Q ss_pred             HHHHhcC------CCCeEEEEcCCC
Q psy7896         419 GEHFLQM------RDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~M------K~gAiLIN~GRg  437 (718)
                      .+.++..      +...++++.|.-
T Consensus       101 ~~~i~~~~~~r~~~~~~~iiDlavP  125 (159)
T d1gpja2         101 VDDVREALRKRDRRSPILIIDIANP  125 (159)
T ss_dssp             HHHHHHHHHHCSSCCCEEEEECCSS
T ss_pred             HhhhHHHHHhcccCCCeEEEeecCC
Confidence            9888532      345699999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.01  E-value=6.8e-06  Score=76.13  Aligned_cols=89  Identities=18%  Similarity=0.193  Sum_probs=64.9

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc----------------eecCHHHHhccCcEEEEcC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY----------------EVTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~----------------~v~~Leell~~aDiIi~at  411 (718)
                      .||++|||.|++|..+|..|...|.+|.++++++.........+.                ...++.|.++++|+|++++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v   80 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV   80 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence            389999999999999999999999999999998765332222221                1246899999999999987


Q ss_pred             CCCCC--cCHHHHhcCCCCeEEEEcCC
Q psy7896         412 GCKDI--IRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       412 gt~~l--I~~e~l~~MK~gAiLIN~GR  436 (718)
                      .....  +-.+.-..++++.+++-+..
T Consensus        81 ~~~~~~~~~~~i~~~l~~~~~iv~~~g  107 (184)
T d1bg6a2          81 PAIHHASIAANIASYISEGQLIILNPG  107 (184)
T ss_dssp             CGGGHHHHHHHHGGGCCTTCEEEESSC
T ss_pred             chhHHHHHHHHhhhccCCCCEEEEeCC
Confidence            65432  12223457788888775533

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.98  E-value=3.4e-06  Score=77.42  Aligned_cols=89  Identities=15%  Similarity=0.108  Sum_probs=61.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRD  427 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~  427 (718)
                      ++|||||+|++|+.+|+.|+.-|.+|+++++++.+.......+.. ..+.+|+++++|+|+++.........-....-..
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~~~~~~   80 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRHV   80 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHHHHTTC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHhhcccC
Confidence            479999999999999999999999999998777654333333332 3468899999999999865433322111111123


Q ss_pred             CeEEEEcCCC
Q psy7896         428 DAIVCNIGHF  437 (718)
Q Consensus       428 gAiLIN~GRg  437 (718)
                      +.++|+++-.
T Consensus        81 ~~~~id~st~   90 (152)
T d1i36a2          81 RGIYVDINNI   90 (152)
T ss_dssp             CSEEEECSCC
T ss_pred             CceeeccCcC
Confidence            4566666543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=6e-06  Score=70.02  Aligned_cols=69  Identities=20%  Similarity=0.191  Sum_probs=50.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-HhhcCcee--cC-HHHHhccCcEEEEcCCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-ASMEGYEV--TT-MEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-a~~~G~~v--~~-Leell~~aDiIi~atgt  413 (718)
                      +++||+|+|+|+|..|+.+|+.|...|++|+++|..+..... ....+..+  .. -++.+.+.|+++..+|-
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~SPGi   74 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVASPGI   74 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEECTTS
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEECCCC
Confidence            578999999999999999999999999999999976543221 11222221  12 24556788999888764

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.86  E-value=7.9e-06  Score=76.76  Aligned_cols=91  Identities=9%  Similarity=0.019  Sum_probs=66.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc---------eecCHHHHhccCcEEEEcCCC-CCC-
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY---------EVTTMEEAAKEGGIFVTTTGC-KDI-  416 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~---------~v~~Leell~~aDiIi~atgt-~~l-  416 (718)
                      .++|||||+|++|..+|++|..-|.+|++||++|.+..+....+.         ...++.+++..+|+++++... ..+ 
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~   81 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD   81 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred             CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence            368999999999999999999999999999999876543322221         122445667788988876432 222 


Q ss_pred             -cCHHHHhcCCCCeEEEEcCCCC
Q psy7896         417 -IRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       417 -I~~e~l~~MK~gAiLIN~GRgd  438 (718)
                       +....+..+++|.++|+++-.+
T Consensus        82 ~v~~~l~~~~~~g~iiid~sT~~  104 (176)
T d2pgda2          82 NFIEKLVPLLDIGDIIIDGGNSE  104 (176)
T ss_dssp             HHHHHHHHHCCTTCEEEECSCCC
T ss_pred             HHHHHHHhccccCcEEEecCcch
Confidence             2345578899999999998764

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=2e-05  Score=74.71  Aligned_cols=94  Identities=15%  Similarity=0.229  Sum_probs=69.9

Q ss_pred             hcccccCcEEEEEecChh-HHHHHHHHHhCCCEEEEEecCCccHHH------HhhcCc------eecCHHHHhccCcEEE
Q psy7896         342 LDIMLAGKVAVVAGYGDV-GKGCAQSLRLFGSRVIVTEIDPINALQ------ASMEGY------EVTTMEEAAKEGGIFV  408 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~I-G~~vA~~l~~fGa~Viv~d~dp~~al~------a~~~G~------~v~~Leell~~aDiIi  408 (718)
                      .|.+++||+|.|||-++| |+-+|.+|...|+.|+.++.+......      ....+.      ....+.+...++|+++
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvI  102 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI  102 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCEEE
Confidence            366899999999999985 999999999999999998754321100      000000      0012667788999999


Q ss_pred             EcCCCCCC-cCHHHHhcCCCCeEEEEcCCCC
Q psy7896         409 TTTGCKDI-IRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       409 ~atgt~~l-I~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ++.|..++ ++.+   ..|+|+++||+|-..
T Consensus       103 savG~p~~~i~~d---~ik~GavvIDvGi~~  130 (171)
T d1edza1         103 TGVPSENYKFPTE---YIKEGAVCINFACTK  130 (171)
T ss_dssp             ECCCCTTCCBCTT---TSCTTEEEEECSSSC
T ss_pred             EccCCCccccChh---hcccCceEeeccccc
Confidence            99998886 7764   459999999999764

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.77  E-value=2.1e-05  Score=77.08  Aligned_cols=91  Identities=19%  Similarity=0.178  Sum_probs=70.5

Q ss_pred             ccccC-cEEEEEecChhHHHHHHHHHh------CCCEEEEE-ecCCccHHHHhhcCce-----ecCHHHHhccCcEEEEc
Q psy7896         344 IMLAG-KVAVVAGYGDVGKGCAQSLRL------FGSRVIVT-EIDPINALQASMEGYE-----VTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       344 ~eL~G-ktVGIIG~G~IG~~vA~~l~~------fGa~Viv~-d~dp~~al~a~~~G~~-----v~~Leell~~aDiIi~a  410 (718)
                      .-++| |+|+|||||..|.+-|..||.      -|.+|++- ..+......|..+|+.     +.+.+|+++.||+|.+.
T Consensus        39 ~~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiL  118 (226)
T d1qmga2          39 DAFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLL  118 (226)
T ss_dssp             HHTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEEC
T ss_pred             HHhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEe
Confidence            34688 999999999999999999998      56777764 3443445567778987     67899999999999987


Q ss_pred             CCC---CCCcCHHHHhcCCCCeEEEEcC
Q psy7896         411 TGC---KDIIRGEHFLQMRDDAIVCNIG  435 (718)
Q Consensus       411 tgt---~~lI~~e~l~~MK~gAiLIN~G  435 (718)
                      +..   ..+. ++....||+|+.|.-.-
T Consensus       119 lPDe~Q~~vy-~~I~p~Lk~G~~L~FaH  145 (226)
T d1qmga2         119 ISDSAQADNY-EKVFSHMKPNSILGLSH  145 (226)
T ss_dssp             SCHHHHHHHH-HHHHHHSCTTCEEEESS
T ss_pred             cchHHHHHHH-HHHHHhcCCCceeeecc
Confidence            543   2345 45678999999887543

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.77  E-value=1.9e-05  Score=73.01  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=70.0

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------cCHHH---Hh-----ccCcEEEE
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------TTMEE---AA-----KEGGIFVT  409 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------~~Lee---ll-----~~aDiIi~  409 (718)
                      -.|.+|.|+|.|.||...++.++.+|++|+++|+++.+...+...|...        .+..+   .+     ...|+++-
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid  104 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTID  104 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEE
T ss_pred             CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeee
Confidence            3688999999999999999999999999999999887654444444321        11222   22     23799999


Q ss_pred             cCCCCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         410 TTGCKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       410 atgt~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      ++|+...++ ..++.++++..++.+|...
T Consensus       105 ~~g~~~~~~-~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2         105 CSGNEKCIT-IGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             CSCCHHHHH-HHHHHSCTTCEEEECSCCS
T ss_pred             cCCChHHHH-HHHHHHhcCCceEEEecCC
Confidence            998865444 5688999999999999764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=3.8e-05  Score=71.19  Aligned_cols=99  Identities=18%  Similarity=0.274  Sum_probs=74.5

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee------cCHHHHh--------ccCcEEEEc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV------TTMEEAA--------KEGGIFVTT  410 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v------~~Leell--------~~aDiIi~a  410 (718)
                      -.|.+|.|+|.|.||...++.++.+|+ +|+++|+++.+...+...|...      .+..+..        ...|+++.+
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~  104 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIEC  104 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEec
Confidence            358899999999999999999999999 7999999987765555556532      1333332        247999999


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCCC--ccccHHH
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHFD--CEIQVSW  445 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRgd--~Eid~~a  445 (718)
                      +|+...++ ..++.++++..++..|-..  ..++...
T Consensus       105 ~G~~~~~~-~a~~~~~~gG~iv~~G~~~~~~~~~~~~  140 (171)
T d1pl8a2         105 TGAEASIQ-AGIYATRSGGTLVLVGLGSEMTTVPLLH  140 (171)
T ss_dssp             SCCHHHHH-HHHHHSCTTCEEEECSCCCSCCCCCHHH
T ss_pred             cCCchhHH-HHHHHhcCCCEEEEEecCCCCCccCHHH
Confidence            99865444 5788999999999998754  3344443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.67  E-value=2.6e-05  Score=69.28  Aligned_cols=65  Identities=15%  Similarity=0.217  Sum_probs=50.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------cCHHHH-hccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------TTMEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------~~Leel-l~~aDiIi~atgt  413 (718)
                      |++.|+|+|++|+.+|+.|...|.+|+++|.||.+..++...|..+        ..|+++ ++++|.++.+++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~   74 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGA   74 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCc
Confidence            6789999999999999999999999999999997665555555433        134555 6788877766543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.67  E-value=2.3e-05  Score=72.33  Aligned_cols=89  Identities=21%  Similarity=0.293  Sum_probs=64.9

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCc--e-ecCHHHH-hccCcEEEEcCCCCC---CcCH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGY--E-VTTMEEA-AKEGGIFVTTTGCKD---IIRG  419 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~--~-v~~Leel-l~~aDiIi~atgt~~---lI~~  419 (718)
                      |+|+|||+|.||..+|+.|+..|.  +|.++|+++.....+...|.  . ..+.++. ...+|+|++++....   ++ .
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~~~~~~vl-~   80 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVRTFREIA-K   80 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHHHHHHHH-H
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCchhhhhhh-h
Confidence            579999999999999999988875  78889988765444444553  2 2334433 357999999876432   23 3


Q ss_pred             HHHhcCCCCeEEEEcCCCC
Q psy7896         420 EHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       420 e~l~~MK~gAiLIN~GRgd  438 (718)
                      +....++++.++++++...
T Consensus        81 ~l~~~~~~~~ii~d~~s~k   99 (171)
T d2g5ca2          81 KLSYILSEDATVTDQGSVK   99 (171)
T ss_dssp             HHHHHSCTTCEEEECCSCC
T ss_pred             hhhcccccccccccccccc
Confidence            4456789999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.63  E-value=3.2e-05  Score=71.76  Aligned_cols=93  Identities=15%  Similarity=0.074  Sum_probs=69.1

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec------C-HHHHhccCcEEEEcCCCCC-C
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT------T-MEEAAKEGGIFVTTTGCKD-I  416 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~------~-Leell~~aDiIi~atgt~~-l  416 (718)
                      -.|.+|.|+|.|.||...++.++.+|++|+++++++.+...+...|.. +.      + .+......|+++.+.+... .
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~  105 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI  105 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc
Confidence            368999999999999999999999999999999988775555555542 11      1 1223345798888765433 2


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCC
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .-...++.++++..++++|..+
T Consensus       106 ~~~~~~~~l~~~G~iv~~G~~~  127 (168)
T d1piwa2         106 DFNIMPKAMKVGGRIVSISIPE  127 (168)
T ss_dssp             CTTTGGGGEEEEEEEEECCCCC
T ss_pred             hHHHHHHHhhccceEEEecccc
Confidence            2245788999999999998754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.58  E-value=3.9e-05  Score=71.86  Aligned_cols=92  Identities=26%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-----cCHHHHhc---------cCcEEE
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-----TTMEEAAK---------EGGIFV  408 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-----~~Leell~---------~aDiIi  408 (718)
                      .-.|.+|.|+|.|.||..+++.++.+|+ +|+++++++.+...+...|.. +     .+..+..+         ..|+|+
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi  105 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL  105 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence            3469999999999999999999999998 799999988765444445542 1     13333211         279999


Q ss_pred             EcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         409 TTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       409 ~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .++|+...+ ...++.++++..++-+|-.
T Consensus       106 d~vG~~~~~-~~a~~~l~~~G~iv~~G~~  133 (182)
T d1vj0a2         106 EATGDSRAL-LEGSELLRRGGFYSVAGVA  133 (182)
T ss_dssp             ECSSCTTHH-HHHHHHEEEEEEEEECCCC
T ss_pred             ecCCchhHH-HHHHHHhcCCCEEEEEeec
Confidence            998876544 4568899999999888753

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.52  E-value=0.00011  Score=73.02  Aligned_cols=88  Identities=25%  Similarity=0.371  Sum_probs=61.2

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEe-cCC-------c--cHHH--------------HhhcCceec-C
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE-IDP-------I--NALQ--------------ASMEGYEVT-T  396 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d-~dp-------~--~al~--------------a~~~G~~v~-~  396 (718)
                      .+.+|.||||.|.|+|++|+.+|+.|..+|++|+.+. .+.       .  ..+.              ....+..+. +
T Consensus        25 ~~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (242)
T d1v9la1          25 LWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKN  104 (242)
T ss_dssp             HHSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSS
T ss_pred             cCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeC
Confidence            3458999999999999999999999999999988643 221       1  0110              111222222 3


Q ss_pred             HHHHhc-cCcEEEEcCCCCCCcCHHHHhcCCCCeE
Q psy7896         397 MEEAAK-EGGIFVTTTGCKDIIRGEHFLQMRDDAI  430 (718)
Q Consensus       397 Leell~-~aDiIi~atgt~~lI~~e~l~~MK~gAi  430 (718)
                      .++++. .|||++.|... +.|+.+...+|+...+
T Consensus       105 ~~~i~~~~~DIliPcA~~-~~I~~~~a~~i~ak~I  138 (242)
T d1v9la1         105 PDAIFKLDVDIFVPAAIE-NVIRGDNAGLVKARLV  138 (242)
T ss_dssp             TTGGGGCCCSEEEECSCS-SCBCTTTTTTCCCSEE
T ss_pred             cchhccccccEEeecchh-ccccHHHHHhcccCEE
Confidence            455654 79999998543 5899999999987533

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=97.50  E-value=1.2e-05  Score=73.09  Aligned_cols=85  Identities=14%  Similarity=0.088  Sum_probs=58.5

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-hcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcC-CCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-MEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQM-RDD  428 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~M-K~g  428 (718)
                      ||+||+|++|+.+++.|+.-+-.+.++++++.+..... ..+....+..++++++|+|+++..... + .+.++.+ +++
T Consensus         2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~~-i-~~v~~~l~~~~   79 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-KTVANHLNLGD   79 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-HHHHTTTCCSS
T ss_pred             EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccchh-h-hHHHhhhcccc
Confidence            69999999999999999774444568988887654333 234456678899999999999876532 3 3456667 478


Q ss_pred             eEEEEcCCC
Q psy7896         429 AIVCNIGHF  437 (718)
Q Consensus       429 AiLIN~GRg  437 (718)
                      .++++++-+
T Consensus        80 ~ivi~~s~~   88 (153)
T d2i76a2          80 AVLVHCSGF   88 (153)
T ss_dssp             CCEEECCSS
T ss_pred             eeeeecccc
Confidence            999999865

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=97.44  E-value=7.2e-05  Score=68.32  Aligned_cols=95  Identities=15%  Similarity=0.187  Sum_probs=64.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHHHh-hcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQAS-MEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMR  426 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~a~-~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK  426 (718)
                      ++||+||+|++|+++++.+..-| -+|.++++++.+..... ..|..+.+-.+.++++|+|+++.....+  .+.++.++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavkP~~~--~~v~~~l~   78 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVKPQDM--EAACKNIR   78 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSCHHHH--HHHHTTCC
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecCHHHH--HHhHHHHh
Confidence            47999999999999999776555 79999999886543322 3466665544557789999998653222  23344443


Q ss_pred             -CCeEEEEcCCCCccccHHHHhc
Q psy7896         427 -DDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       427 -~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                       .+.+++.+.-|   +..+.+.+
T Consensus        79 ~~~~~viS~~ag---~~~~~l~~   98 (152)
T d1yqga2          79 TNGALVLSVAAG---LSVGTLSR   98 (152)
T ss_dssp             CTTCEEEECCTT---CCHHHHHH
T ss_pred             hcccEEeecccC---CCHHHHHH
Confidence             46788887665   33444544

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=97.40  E-value=9.7e-05  Score=68.26  Aligned_cols=91  Identities=15%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee----cCH---HHHhccCcEEEEcCCCCCCcC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV----TTM---EEAAKEGGIFVTTTGCKDIIR  418 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v----~~L---eell~~aDiIi~atgt~~lI~  418 (718)
                      -.|.+|.|+|.|.||...++.++.+|+++++++.++.+...+...|...    .+-   .+..+..|+++.+++....++
T Consensus        29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~  108 (168)
T d1uufa2          29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLD  108 (168)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHH
T ss_pred             CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHH
Confidence            3689999999999999999999999999999988776544344445421    111   223356899999888765544


Q ss_pred             HHHHhcCCCCeEEEEcCCC
Q psy7896         419 GEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg  437 (718)
                       ..++.++++..++.+|..
T Consensus       109 -~~~~~l~~~G~iv~~G~~  126 (168)
T d1uufa2         109 -DFTTLLKRDGTMTLVGAP  126 (168)
T ss_dssp             -HHHTTEEEEEEEEECCCC
T ss_pred             -HHHHHHhcCCEEEEeccC
Confidence             568899999999999864

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.37  E-value=6.7e-05  Score=70.39  Aligned_cols=90  Identities=23%  Similarity=0.323  Sum_probs=69.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-----cCHHH-Hhc-----cCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-----TTMEE-AAK-----EGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-----~~Lee-ll~-----~aDiIi~atgt  413 (718)
                      .|.+|.|+|.|.||...++.++.+|+ +|+++|.++.+...+...|.. +     .+..+ +.+     ..|+++.+++.
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~  106 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG  106 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred             CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence            68999999999999999999999998 799999888765545555532 2     12233 222     27999999988


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...++ +.+..++++..++-+|-.
T Consensus       107 ~~~~~-~a~~~~~~~G~iv~~G~~  129 (174)
T d1jqba2         107 SETLS-QAVKMVKPGGIISNINYH  129 (174)
T ss_dssp             TTHHH-HHHHHEEEEEEEEECCCC
T ss_pred             HHHHH-HHHHHHhcCCEEEEEeec
Confidence            76654 568889999999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.34  E-value=0.00011  Score=68.48  Aligned_cols=90  Identities=16%  Similarity=0.066  Sum_probs=63.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce---------ecCHHHH---hccCcEEEEcCCCCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE---------VTTMEEA---AKEGGIFVTTTGCKDI  416 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~---------v~~Leel---l~~aDiIi~atgt~~l  416 (718)
                      ++|||||+|++|..+|++|..-|.+|.+||+++.+.......+..         ..+.+++   +..++.++........
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA   81 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence            579999999999999999999999999999988765433222221         1234444   3466666665443322


Q ss_pred             cC---HHHHhcCCCCeEEEEcCCCC
Q psy7896         417 IR---GEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       417 I~---~e~l~~MK~gAiLIN~GRgd  438 (718)
                      +.   ......++++.+++|++..+
T Consensus        82 ~~~~~~~~~~~~~~~~iii~~st~~  106 (178)
T d1pgja2          82 TDSTIEQLKKVFEKGDILVDTGNAH  106 (178)
T ss_dssp             HHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred             hhhhhhhhhhhccccceecccCccc
Confidence            22   35567899999999998864

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.33  E-value=0.0003  Score=69.54  Aligned_cols=88  Identities=24%  Similarity=0.323  Sum_probs=63.9

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHH-HhCCCEEEEEec------CC--cc--HHHH---------hhcCceecCHHHHh
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSL-RLFGSRVIVTEI------DP--IN--ALQA---------SMEGYEVTTMEEAA  401 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l-~~fGa~Viv~d~------dp--~~--al~a---------~~~G~~v~~Leell  401 (718)
                      .+.+++|+||.|-|+|++|+.+|+.| +.+|++|+.+..      +|  ..  .+..         ...+.+..+.++++
T Consensus        25 ~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  104 (234)
T d1b26a1          25 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL  104 (234)
T ss_dssp             TTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHH
T ss_pred             cCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeecccccc
Confidence            46789999999999999999999998 578999887531      11  11  1110         01123445677887


Q ss_pred             c-cCcEEEEcCCCCCCcCHHHHhcCCCCeE
Q psy7896         402 K-EGGIFVTTTGCKDIIRGEHFLQMRDDAI  430 (718)
Q Consensus       402 ~-~aDiIi~atgt~~lI~~e~l~~MK~gAi  430 (718)
                      . .|||++.|.. .+.|+.+...+++...+
T Consensus       105 ~~~~DI~~PcA~-~~~I~~~~a~~l~~~~I  133 (234)
T d1b26a1         105 ELDVDILVPAAL-EGAIHAGNAERIKAKAV  133 (234)
T ss_dssp             TSCCSEEEECSC-TTCBCHHHHTTCCCSEE
T ss_pred             ccccceeecchh-cccccHHHHHHhhhceE
Confidence            6 8999999843 36899999999997643

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.30  E-value=0.00018  Score=64.02  Aligned_cols=65  Identities=29%  Similarity=0.408  Sum_probs=47.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-cCcee--------cCHHHH-hccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-EGYEV--------TTMEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-~G~~v--------~~Leel-l~~aDiIi~atgt  413 (718)
                      ++|.|+|+|++|+.+|+.|...|.+|++.|.||....+... .+..+        ..|+++ ++++|.++.++.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~   75 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGK   75 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCc
Confidence            47999999999999999999999999999999865433322 24332        123333 5678888776654

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.28  E-value=0.00042  Score=68.65  Aligned_cols=87  Identities=21%  Similarity=0.329  Sum_probs=61.6

Q ss_pred             cc-cccCcEEEEEecChhHHHHHHHHH-hCCCEEEEE-ecCC-------cc--HHHH-h--------hcCceecCHHHHh
Q psy7896         343 DI-MLAGKVAVVAGYGDVGKGCAQSLR-LFGSRVIVT-EIDP-------IN--ALQA-S--------MEGYEVTTMEEAA  401 (718)
Q Consensus       343 g~-eL~GktVGIIG~G~IG~~vA~~l~-~fGa~Viv~-d~dp-------~~--al~a-~--------~~G~~v~~Leell  401 (718)
                      +. .|+||||.|.|+|++|+.+|+.|. .+|++|+.. |.+.       ..  .+.. .        ..+....+.++++
T Consensus        26 g~~~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~  105 (239)
T d1gtma1          26 GWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELL  105 (239)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHH
T ss_pred             CCCCcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeecccccc
Confidence            43 599999999999999999999885 689998764 3221       11  1100 0        1134556777876


Q ss_pred             c-cCcEEEEcCCCCCCcCHHHHhcCCCCeE
Q psy7896         402 K-EGGIFVTTTGCKDIIRGEHFLQMRDDAI  430 (718)
Q Consensus       402 ~-~aDiIi~atgt~~lI~~e~l~~MK~gAi  430 (718)
                      . +|||++.|... +.|+.+...+++...+
T Consensus       106 ~~~~DIl~PcA~~-~~I~~~~a~~i~ak~I  134 (239)
T d1gtma1         106 ELEVDVLAPAAIE-EVITKKNADNIKAKIV  134 (239)
T ss_dssp             HSCCSEEEECSCS-CCBCTTGGGGCCCSEE
T ss_pred             cccccEEeecccc-ccccHHHHHhccccEE
Confidence            4 79999998653 6899999999977643

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.28  E-value=0.00019  Score=73.15  Aligned_cols=93  Identities=16%  Similarity=0.293  Sum_probs=61.8

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEe-cC-----C--c--cHHHHhh--cC----c--eecCHHHHhc-c
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTE-ID-----P--I--NALQASM--EG----Y--EVTTMEEAAK-E  403 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d-~d-----p--~--~al~a~~--~G----~--~v~~Leell~-~  403 (718)
                      ..+|.||||.|-|+|++|+.+|+.|...|++|+.+. .+     |  .  ..+....  .|    +  ...+-++++. .
T Consensus        31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (293)
T d1hwxa1          31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD  110 (293)
T ss_dssp             CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence            457999999999999999999999999999988753 21     1  1  1111110  01    0  1112234544 7


Q ss_pred             CcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         404 GGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       404 aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      |||++.|.- .+.|+.+....++... ++-.+.+
T Consensus       111 ~DIliPaA~-~~~I~~~~a~~l~ak~-I~EgAN~  142 (293)
T d1hwxa1         111 CDILIPAAS-EKQLTKSNAPRVKAKI-IAEGANG  142 (293)
T ss_dssp             CSEEEECSS-SSCBCTTTGGGCCCSE-EECCSSS
T ss_pred             ccEEeeccc-cccccHHHHHHHhhCE-EeccCCC
Confidence            999998743 3689999999997763 3444444

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.26  E-value=3.1e-05  Score=75.08  Aligned_cols=114  Identities=15%  Similarity=0.080  Sum_probs=72.1

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhh----hhh---hhHHHHHHHHHHhcccccc------
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME----GYE---LDEEVAALHLEHLGVKLTK------  333 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~Avae----Gf~---L~r~i~~~~l~~lgv~~~~------  333 (718)
                      ..+++|+|||.|+.|+.+|..|+++|..|+++|..+...-+....    ++.   .........+..+......      
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLALG  126 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEEECS
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeeeecc
Confidence            578999999999999999999999999999999766543221111    111   1111111111111111100      


Q ss_pred             -c----chh-h----------------h-----------------hhhcccccCcEEEEEecChhHHHHHHHHHhCCCEE
Q psy7896         334 -L----TED-Q----------------A-----------------KYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRV  374 (718)
Q Consensus       334 -~----~~~-~----------------~-----------------~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~V  374 (718)
                       .    ... .                .                 ......-.+++|.|+|.|.+|..+|..+..+|.+|
T Consensus       127 ~~~~~~~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~e~A~~l~~~g~~V  206 (233)
T d1djqa3         127 QKPMTADDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEANPQI  206 (233)
T ss_dssp             CCCCCHHHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSCTTS
T ss_pred             cccccchhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhccccCCceeEecCchHHHHHHHHHHhcCCce
Confidence             0    000 0                0                 00012346799999999999999999999999999


Q ss_pred             EEEecC
Q psy7896         375 IVTEID  380 (718)
Q Consensus       375 iv~d~d  380 (718)
                      ++.++.
T Consensus       207 tli~r~  212 (233)
T d1djqa3         207 AIPYKR  212 (233)
T ss_dssp             CCCCCC
T ss_pred             EEEEec
Confidence            886654

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=97.20  E-value=0.00028  Score=65.35  Aligned_cols=114  Identities=15%  Similarity=0.243  Sum_probs=78.7

Q ss_pred             HHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccc
Q psy7896         255 LVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTK  333 (718)
Q Consensus       255 ~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~  333 (718)
                      .+.++.+.......|+.|+|+|.|++|..+++.++.+|. .|++++.++.+.                            
T Consensus        19 a~~al~~~~~~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~----------------------------   70 (172)
T d1h2ba2          19 AYRAVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL----------------------------   70 (172)
T ss_dssp             HHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH----------------------------
T ss_pred             HHHHHHHhhhccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHH----------------------------
Confidence            445666654445689999999999999999999999996 667777777654                            


Q ss_pred             cchhhhhhhcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEE-ecCCccHHHHhhcCceecCHHHHhccCcEEEEcCC
Q psy7896         334 LTEDQAKYLDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT-EIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       334 ~~~~~~~~~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~-d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atg  412 (718)
                                                     +.++.+|+..++. +.++.........|          ...|+++.+++
T Consensus        71 -------------------------------~~~~~~ga~~~i~~~~~~~~~~~~~~~~----------~g~d~vid~~g  109 (172)
T d1h2ba2          71 -------------------------------KLAERLGADHVVDARRDPVKQVMELTRG----------RGVNVAMDFVG  109 (172)
T ss_dssp             -------------------------------HHHHHTTCSEEEETTSCHHHHHHHHTTT----------CCEEEEEESSC
T ss_pred             -------------------------------HHHhhcccceeecCcccHHHHHHHhhCC----------CCceEEEEecC
Confidence                                           6677888864442 22221111111111          13689999988


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      +...++ ..+..++++..++.+|.++
T Consensus       110 ~~~~~~-~a~~~l~~~G~iv~~G~~~  134 (172)
T d1h2ba2         110 SQATVD-YTPYLLGRMGRLIIVGYGG  134 (172)
T ss_dssp             CHHHHH-HGGGGEEEEEEEEECCCSS
T ss_pred             cchHHH-HHHHHHhCCCEEEEEeCcc
Confidence            764443 5688899999999999653

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.20  E-value=0.00018  Score=65.91  Aligned_cols=88  Identities=14%  Similarity=0.075  Sum_probs=59.3

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCC-CCC--cCHHHHhcCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGC-KDI--IRGEHFLQMR  426 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt-~~l--I~~e~l~~MK  426 (718)
                      +||+||+|++|..+|++|..-|..|. +++.+.+.......+....+..+.+.++|+++++..+ ..+  +....+..++
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~   80 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLV-WNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVAEALYPYLR   80 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEE-ECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCC
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEE-EeCCHHHHHHHHHHcCCcccccccccceeEEEecccchhhhhhhhcccccccc
Confidence            69999999999999999998887665 4444443333222222233445666678988876432 111  2234567899


Q ss_pred             CCeEEEEcCCCC
Q psy7896         427 DDAIVCNIGHFD  438 (718)
Q Consensus       427 ~gAiLIN~GRgd  438 (718)
                      ++.++|+++..+
T Consensus        81 ~~~~iid~sT~~   92 (156)
T d2cvza2          81 EGTYWVDATSGE   92 (156)
T ss_dssp             TTEEEEECSCCC
T ss_pred             ccccccccccCC
Confidence            999999999864

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.20  E-value=0.00013  Score=66.54  Aligned_cols=93  Identities=18%  Similarity=0.188  Sum_probs=69.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec------CHH----HHhccCcEEEEcCCCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT------TME----EAAKEGGIFVTTTGCKDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~------~Le----ell~~aDiIi~atgt~~l  416 (718)
                      .|++|.|.|.|.||..+++.++..|++|++++.++.+...+...|...+      +..    +..+..|.++.+++....
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~  106 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKPA  106 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHHH
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecCCHHH
Confidence            6899999999999999999999999999999988876555555565321      222    233456666666665443


Q ss_pred             cCHHHHhcCCCCeEEEEcCCCCcc
Q psy7896         417 IRGEHFLQMRDDAIVCNIGHFDCE  440 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GRgd~E  440 (718)
                      + ...++.|+++..++.+|-.+..
T Consensus       107 ~-~~a~~~l~~~G~i~~~g~~~~~  129 (168)
T d1rjwa2         107 F-QSAYNSIRRGGACVLVGLPPEE  129 (168)
T ss_dssp             H-HHHHHHEEEEEEEEECCCCSSE
T ss_pred             H-HHHHHHhccCCceEecccccCC
Confidence            4 4678899999999999876433

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.19  E-value=0.00055  Score=64.58  Aligned_cols=94  Identities=23%  Similarity=0.173  Sum_probs=64.7

Q ss_pred             hhhcccccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHh-----hcC--c---ee---cCHHHHhccCc
Q psy7896         340 KYLDIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS-----MEG--Y---EV---TTMEEAAKEGG  405 (718)
Q Consensus       340 ~~~g~eL~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~-----~~G--~---~v---~~Leell~~aD  405 (718)
                      +..+.+|+||++.|.| .|.||+.+|+.+...|++|+++++++.+..+..     ...  +   .+   ..+++++.+.|
T Consensus        15 ~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          15 KAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             HHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred             HHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcC
Confidence            3457899999999999 688999999999999999999998875432111     011  1   11   23456677888


Q ss_pred             EEEEcCCC-CCCcCHHHHhcCCCCeEEEE
Q psy7896         406 IFVTTTGC-KDIIRGEHFLQMRDDAIVCN  433 (718)
Q Consensus       406 iIi~atgt-~~lI~~e~l~~MK~gAiLIN  433 (718)
                      +++.+++- ...++.+.++.+..--++.+
T Consensus        95 ilin~Ag~g~~~~~~e~~~~~~~~nv~~~  123 (191)
T d1luaa1          95 FVFTAGAIGLELLPQAAWQNESSIEIVAD  123 (191)
T ss_dssp             EEEECCCTTCCCBCHHHHHTCTTCCEEEE
T ss_pred             eeeecCccccccCCHHHHHhhhcceeehh
Confidence            88877652 34566777766655444443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=4.1e-05  Score=72.82  Aligned_cols=107  Identities=22%  Similarity=0.178  Sum_probs=66.0

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh----hhhhhhhhhHHH---HHHHHHHhcccccccch--
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ----ASMEGYELDEEV---AALHLEHLGVKLTKLTE--  336 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~----AvaeGf~L~r~i---~~~~l~~lgv~~~~~~~--  336 (718)
                      ...+|+|+|||.|+.|+.+|..|+++|+.|+++|..+...-+    ....++...+++   ....+..+++++.....  
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~Vt  119 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVT  119 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCCC
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEEc
Confidence            457899999999999999999999999999999988765322    122334333332   33444455666532110  


Q ss_pred             --hhhhh-------------h--cccccCcEEEEEecChhHHHH-HHHHHhCCC
Q psy7896         337 --DQAKY-------------L--DIMLAGKVAVVAGYGDVGKGC-AQSLRLFGS  372 (718)
Q Consensus       337 --~~~~~-------------~--g~eL~GktVGIIG~G~IG~~v-A~~l~~fGa  372 (718)
                        ...++             .  ...-.|++|.|||.|+++..+ ++.+...|.
T Consensus       120 ~~~~~~~d~vilAtG~~~~~~~~pg~~~g~~v~vigggd~a~~~~~~~Av~~G~  173 (179)
T d1ps9a3         120 ADQLQAFDETILASGIPNRALAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGT  173 (179)
T ss_dssp             SSSSCCSSEEEECCCEECCTTHHHHHTTTCCEEECGGGTCCSSCCHHHHHHHHH
T ss_pred             ccccccceeEEEeecCCCcccccchhccCCEEEEECCcHhhhhccchhhhhccC
Confidence              00000             0  011257888888888877665 445544443

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=97.15  E-value=0.00054  Score=64.14  Aligned_cols=96  Identities=16%  Similarity=0.171  Sum_probs=70.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHh-----ccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAA-----KEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell-----~~aDiIi~a  410 (718)
                      --.|.+|.|+|.|.||...++.++.+|+ +|++.|.++.+...+...|.. +.       ......     ...|+++.+
T Consensus        26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~  105 (174)
T d1e3ia2          26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC  105 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence            3478999999999999999999999999 688899888776555555542 11       122222     347999999


Q ss_pred             CCCCCCcCHHHHhcCCCC-eEEEEcCCCCccc
Q psy7896         411 TGCKDIIRGEHFLQMRDD-AIVCNIGHFDCEI  441 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~g-AiLIN~GRgd~Ei  441 (718)
                      +|+...+. +.++.++++ ..++.+|....++
T Consensus       106 ~G~~~~~~-~a~~~~~~g~G~~v~vG~~~~~~  136 (174)
T d1e3ia2         106 AGTAQTLK-AAVDCTVLGWGSCTVVGAKVDEM  136 (174)
T ss_dssp             SCCHHHHH-HHHHTBCTTTCEEEECCCSSSEE
T ss_pred             cccchHHH-HHHHHhhcCCeEEEecCCCCCcc
Confidence            99865443 567888885 7888888754433

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.14  E-value=0.00018  Score=65.89  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=66.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHh----ccCcEEEEcCCCCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAA----KEGGIFVTTTGCKD  415 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell----~~aDiIi~atgt~~  415 (718)
                      -.|.+|.|+|.|.||..+++.++.+|++|+++++++.+...+...|...      .+..+.+    ...|.++.+++...
T Consensus        26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~  105 (166)
T d1llua2          26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNS  105 (166)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHH
T ss_pred             CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccch
Confidence            3589999999999999999999999999999998887654444455431      1222222    23456666666544


Q ss_pred             CcCHHHHhcCCCCeEEEEcCCCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGHFD  438 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GRgd  438 (718)
                      .+ ...++.++++..++.+|-..
T Consensus       106 ~~-~~~~~~l~~~G~iv~~G~~~  127 (166)
T d1llua2         106 AF-GQAIGMARRGGTIALVGLPP  127 (166)
T ss_dssp             HH-HHHHTTEEEEEEEEECCCCS
T ss_pred             HH-HHHHHHhcCCcEEEEEEecC
Confidence            44 35788999999999998643

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.97  E-value=0.00084  Score=63.89  Aligned_cols=66  Identities=21%  Similarity=0.275  Sum_probs=50.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHH-------------------HhhcC--ceecCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ-------------------ASMEG--YEVTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~-------------------a~~~G--~~v~~Leell~~aDiI  407 (718)
                      ++|+|||+|.+|..+|..+...|.+|+++|.|+.+-..                   ....+  ....++.++++.+|++
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i   80 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS   80 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence            47999999999999999999999999999987643110                   01111  1235688999999999


Q ss_pred             EEcCCCC
Q psy7896         408 VTTTGCK  414 (718)
Q Consensus       408 i~atgt~  414 (718)
                      +++.+|.
T Consensus        81 ~i~VpTP   87 (202)
T d1mv8a2          81 FICVGTP   87 (202)
T ss_dssp             EECCCCC
T ss_pred             EEecCcc
Confidence            9986653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.0004  Score=62.73  Aligned_cols=89  Identities=12%  Similarity=0.039  Sum_probs=60.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh---hcCc-----eecCHHHHhccCcEEEEcCCCCCCcCH-
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS---MEGY-----EVTTMEEAAKEGGIFVTTTGCKDIIRG-  419 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~---~~G~-----~v~~Leell~~aDiIi~atgt~~lI~~-  419 (718)
                      ++|+|||.|.||..+|..|...|.+|+++++++.......   .++.     ...+..+.+..+|++++++....+-.. 
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka~~~~~~~   80 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAWQVSDAV   80 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGGGHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecccchHHHH
Confidence            5899999999999999999999999999998875432111   1111     123455777899999998776543221 


Q ss_pred             HHH-hcCCCCeEEEEcCCC
Q psy7896         420 EHF-LQMRDDAIVCNIGHF  437 (718)
Q Consensus       420 e~l-~~MK~gAiLIN~GRg  437 (718)
                      +.+ ..++++..++...-|
T Consensus        81 ~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          81 KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             HHHHTTSCTTSCEEEECSS
T ss_pred             HhhccccCcccEEeeccCc
Confidence            122 355677777765443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.95  E-value=0.00028  Score=70.63  Aligned_cols=95  Identities=17%  Similarity=0.263  Sum_probs=63.2

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCCEEEEE-e-------cCCcc--H-HHH----------------hhcCcee
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVT-E-------IDPIN--A-LQA----------------SMEGYEV  394 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~-d-------~dp~~--a-l~a----------------~~~G~~v  394 (718)
                      .+.+|+||||.|.|+|++|+.+|+.|...|++|+.+ |       .+...  . ...                ...+...
T Consensus        30 ~~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (255)
T d1bgva1          30 ENDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQF  109 (255)
T ss_dssp             TTCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEE
T ss_pred             CCCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCcee
Confidence            467899999999999999999999999999998753 3       22211  1 100                0112233


Q ss_pred             cCHHHHh-ccCcEEEEcCCCCCCcCHHHHhcCCC-Ce-EEEEcCCC
Q psy7896         395 TTMEEAA-KEGGIFVTTTGCKDIIRGEHFLQMRD-DA-IVCNIGHF  437 (718)
Q Consensus       395 ~~Leell-~~aDiIi~atgt~~lI~~e~l~~MK~-gA-iLIN~GRg  437 (718)
                      .+.++++ .+|||++.|.. .+.|+.+....++. ++ +++=.+.+
T Consensus       110 ~~~~~~~~~~~DiliPcA~-~~~I~~~~a~~l~a~~ck~I~EgAN~  154 (255)
T d1bgva1         110 FPGEKPWGQKVDIIMPCAT-QNDVDLEQAKKIVANNVKYYIEVANM  154 (255)
T ss_dssp             EETCCGGGSCCSEEECCSC-TTCBCHHHHHHHHHTTCCEEECCSSS
T ss_pred             echhhcccccccEEeeccc-cccccHHHHHhhhhcCceEEecCCCC
Confidence            3444444 37999988743 36899998888864 45 45544444

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00078  Score=62.47  Aligned_cols=70  Identities=17%  Similarity=0.243  Sum_probs=51.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhh-----cCceecCHHHH-hccCcEEEEcCC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM-----EGYEVTTMEEA-AKEGGIFVTTTG  412 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~-----~G~~v~~Leel-l~~aDiIi~atg  412 (718)
                      +..+.||+|.|+|.|..+++++..|...|++|.++++++.++.....     ......++++. ...+|+||.+|.
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp   88 (170)
T d1nyta1          13 SFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATS   88 (170)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCS
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccc
Confidence            56789999999999999999999999999999999988765432111     11233444443 346788887754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.91  E-value=0.00032  Score=65.18  Aligned_cols=92  Identities=18%  Similarity=0.169  Sum_probs=67.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCCccHHHHhhcCce-e-----cCHHHHhc-----cCcEEEEcCC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINALQASMEGYE-V-----TTMEEAAK-----EGGIFVTTTG  412 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp~~al~a~~~G~~-v-----~~Leell~-----~aDiIi~atg  412 (718)
                      --.|.+|.|+|.|.||...++.++.+|++ |++.+.++.+...+...|.. +     .+..+.++     ..|+++.++|
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G  105 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTG  105 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSC
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCC
Confidence            34689999999999999999999999996 45678777654444444542 2     12333332     2699999998


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +...+ ...++.++++..++.+|-.
T Consensus       106 ~~~~~-~~~~~~~~~~G~i~~~G~~  129 (174)
T d1f8fa2         106 SPEIL-KQGVDALGILGKIAVVGAP  129 (174)
T ss_dssp             CHHHH-HHHHHTEEEEEEEEECCCC
T ss_pred             cHHHH-HHHHhcccCceEEEEEeec
Confidence            76444 3668889999999998853

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.0011  Score=63.04  Aligned_cols=97  Identities=14%  Similarity=0.104  Sum_probs=64.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC------------------c-eecCHH
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG------------------Y-EVTTME  398 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G------------------~-~v~~Le  398 (718)
                      |+|+|||.|.+|+.+|..+...|.+|+++|+++.....+           ...+                  . ...++.
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~   84 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA   84 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence            799999999999999999999999999999987531100           0111                  1 234678


Q ss_pred             HHhccCcEEEEcC-CCC---CCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         399 EAAKEGGIFVTTT-GCK---DIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       399 ell~~aDiIi~at-gt~---~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      ++++++|+|+-+. ++-   .-+-++.-+.++++++|.....+   +....|..
T Consensus        85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~---l~i~~la~  135 (192)
T d1f0ya2          85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS---LQITSIAN  135 (192)
T ss_dssp             HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS---SCHHHHHT
T ss_pred             hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc---cccchhhh
Confidence            8899999999873 321   11112223457888888754442   44455544

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.72  E-value=0.0012  Score=59.55  Aligned_cols=89  Identities=15%  Similarity=0.053  Sum_probs=57.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhc-C-c--------eecCHHHHhccCcEEEEcCCCCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME-G-Y--------EVTTMEEAAKEGGIFVTTTGCKDI  416 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~-G-~--------~v~~Leell~~aDiIi~atgt~~l  416 (718)
                      .+|+|.|||.|.+|+.+|+.|..-|.+|+++|+++.++...... + .        ....+++.+...|+++.++.....
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~   80 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH   80 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence            37999999999999999999999999999999988765432211 1 0        012345567778877766543211


Q ss_pred             cCHHHHhcCCCCeEEEEcCC
Q psy7896         417 IRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       417 I~~e~l~~MK~gAiLIN~GR  436 (718)
                       .......++.+..++..+.
T Consensus        81 -~~~~~~~~~~~~~~~~~~~   99 (182)
T d1e5qa1          81 -ATVIKSAIRQKKHVVTTSY   99 (182)
T ss_dssp             -HHHHHHHHHHTCEEECSSC
T ss_pred             -hHHHHHHHhhccceeeccc
Confidence             1112233445556666554

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.72  E-value=0.0013  Score=57.54  Aligned_cols=39  Identities=23%  Similarity=0.290  Sum_probs=34.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  384 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a  384 (718)
                      -.+.+|||+|.|..|+.+|..++.+|.+|+++|.++...
T Consensus         9 ~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2           9 PAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             TTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            356789999999999999999999999999999887643

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=96.71  E-value=0.00091  Score=61.99  Aligned_cols=89  Identities=19%  Similarity=0.219  Sum_probs=64.5

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ec---CHH-HH--hccCcEEEEcCCCCCCc
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VT---TME-EA--AKEGGIFVTTTGCKDII  417 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~---~Le-el--l~~aDiIi~atgt~~lI  417 (718)
                      -.|++|.|.|. |.||+..++.++.+|++|++++.++.+...+...|.. +.   +.. ++  -+..|+|+-+.|.  .+
T Consensus        26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G~--~~  103 (171)
T d1iz0a2          26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRGK--EV  103 (171)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSCT--TH
T ss_pred             CCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccch--hH
Confidence            47899999995 9999999999999999999998777654444445543 22   221 11  2457999988773  23


Q ss_pred             CHHHHhcCCCCeEEEEcCCC
Q psy7896         418 RGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       418 ~~e~l~~MK~gAiLIN~GRg  437 (718)
                       ...++.++++..++.+|..
T Consensus       104 -~~~~~~l~~~G~~v~~G~~  122 (171)
T d1iz0a2         104 -EESLGLLAHGGRLVYIGAA  122 (171)
T ss_dssp             -HHHHTTEEEEEEEEEC---
T ss_pred             -HHHHHHHhcCCcEEEEeCC
Confidence             5678999999999999753

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.65  E-value=0.0018  Score=59.61  Aligned_cols=67  Identities=16%  Similarity=0.126  Sum_probs=47.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC-CEEEEEecCCccHHH-H------h-hcCce-----ecCHHHHhccCcEEEEcCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG-SRVIVTEIDPINALQ-A------S-MEGYE-----VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG-a~Viv~d~dp~~al~-a------~-~~G~~-----v~~Leell~~aDiIi~atg  412 (718)
                      +-++|+|||.|.||+.+|..+...| +++.++|.++.++.. +      . ..+..     ..+.++.++.+|+|+.+.+
T Consensus         6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag   85 (154)
T d1pzga1           6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG   85 (154)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence            4589999999999999998776655 489999988754211 1      0 01111     1346788999999998765


Q ss_pred             C
Q psy7896         413 C  413 (718)
Q Consensus       413 t  413 (718)
                      .
T Consensus        86 ~   86 (154)
T d1pzga1          86 L   86 (154)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.64  E-value=0.00043  Score=62.81  Aligned_cols=41  Identities=22%  Similarity=0.212  Sum_probs=36.2

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ...|+||+|.|||.|.||..-|+.|...||+|+++.+++..
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~~   48 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHK   48 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECT
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCH
Confidence            45799999999999999999999999999999999654443

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.63  E-value=0.00051  Score=64.99  Aligned_cols=97  Identities=24%  Similarity=0.220  Sum_probs=62.4

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHH-----------hhcC-------------ceecCHHHHhccC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA-----------SMEG-------------YEVTTMEEAAKEG  404 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a-----------~~~G-------------~~v~~Leell~~a  404 (718)
                      |+|+|||.|.+|+.+|..+...|.+|+++|+++.....+           ...+             ....+..+.+.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a   84 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV   84 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence            679999999999999999999999999999987532111           1111             1112222346789


Q ss_pred             cEEEEcCCCC----CCcCHHHHhcCCCCeEEEEcCCCCccccHHHHhc
Q psy7896         405 GIFVTTTGCK----DIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLDK  448 (718)
Q Consensus       405 DiIi~atgt~----~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~~  448 (718)
                      |+|+.+....    .-+-++.-+..+++++|.....+   +....|.+
T Consensus        85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~---l~i~~la~  129 (186)
T d1wdka3          85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST---ISISLLAK  129 (186)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS---SCHHHHGG
T ss_pred             ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccc---ccHHHHHH
Confidence            9999874321    11222333567889988876554   44455544

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=96.56  E-value=0.005  Score=63.67  Aligned_cols=100  Identities=20%  Similarity=0.282  Sum_probs=74.8

Q ss_pred             cCcEEEEEecChhHHHHHHHH-HhCCC-EEEEEecCCccHHH--H-h--hcCcee---cCHHHHhccCcEEEEcCCCC--
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSL-RLFGS-RVIVTEIDPINALQ--A-S--MEGYEV---TTMEEAAKEGGIFVTTTGCK--  414 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l-~~fGa-~Viv~d~dp~~al~--a-~--~~G~~v---~~Leell~~aDiIi~atgt~--  414 (718)
                      .-++++|||.|..++.-++.+ .-++. +|.+++++|.....  . .  ..|+.+   .+++++++.||+|+++|.++  
T Consensus       127 da~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~s~  206 (340)
T d1x7da_         127 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADKAY  206 (340)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCSSE
T ss_pred             CCceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccCCC
Confidence            358999999999999888765 55776 79999998865321  1 1  225543   47999999999999987654  


Q ss_pred             -CCcCHHHHhcCCCCeEEEEcCCC---CccccHHHHhcc
Q psy7896         415 -DIIRGEHFLQMRDDAIVCNIGHF---DCEIQVSWLDKN  449 (718)
Q Consensus       415 -~lI~~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~~  449 (718)
                       -+|+.   +.+|+|+.+..+|..   ..|+|.+.+...
T Consensus       207 ~Pv~~~---~~l~pG~hI~aiGs~~p~~~Eld~~~l~~a  242 (340)
T d1x7da_         207 ATIITP---DMLEPGMHLNAVGGDCPGKTELHADVLRNA  242 (340)
T ss_dssp             EEEECG---GGCCTTCEEEECSCCBTTBEEECHHHHHTS
T ss_pred             Ccccch---hhcCCCCEEeecccchhhhhccCHHHHhcC
Confidence             36775   467999999999874   368887777653

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0041  Score=58.03  Aligned_cols=95  Identities=15%  Similarity=0.088  Sum_probs=62.8

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHH--h----hc---Cc-e---e---cCHHHHhccCc
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQA--S----ME---GY-E---V---TTMEEAAKEGG  405 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a--~----~~---G~-~---v---~~Leell~~aD  405 (718)
                      +.+++||+|.|+|.|..|++++..+...|+ +++++++++......  .    ..   .. .   .   ..+.+.+.++|
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d   92 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD   92 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence            668899999999999999999999999999 688898887543211  0    00   10 1   1   12445678899


Q ss_pred             EEEEcCCC--CCCcCH---HHHhcCCCCeEEEEcCCC
Q psy7896         406 IFVTTTGC--KDIIRG---EHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       406 iIi~atgt--~~lI~~---e~l~~MK~gAiLIN~GRg  437 (718)
                      +||.+|..  ...-+.   ..+..++++.+++++-..
T Consensus        93 iiIN~Tp~G~~~~~~~~~~~~~~~~~~~~~v~Di~Y~  129 (182)
T d1vi2a1          93 ILTNGTKVGMKPLENESLVNDISLLHPGLLVTECVYN  129 (182)
T ss_dssp             EEEECSSTTSTTSCSCCSCCCGGGSCTTCEEEECCCS
T ss_pred             eeccccCCccccccchhhhhHHHhhhcchhhHHhhcC
Confidence            99988642  111111   124556777777776554

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=96.45  E-value=0.0043  Score=57.68  Aligned_cols=92  Identities=17%  Similarity=0.209  Sum_probs=65.6

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee-c-------CHHHHh-----ccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV-T-------TMEEAA-----KEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v-~-------~Leell-----~~aDiIi~a  410 (718)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|+++|.++.+...+...|... .       ...++.     ...|+++.+
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~  106 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEV  106 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEe
Confidence            3469999999999999999999999996 8999999888755555445431 1       122222     358999998


Q ss_pred             CCCCCCcCHHHHhcC-CCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQM-RDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~M-K~gAiLIN~GRg  437 (718)
                      ++....+. ..+..+ +.+..++.+|..
T Consensus       107 ~g~~~~~~-~a~~~~~~~~G~~v~vG~~  133 (176)
T d1d1ta2         107 IGHLETMI-DALASCHMNYGTSVVVGVP  133 (176)
T ss_dssp             SCCHHHHH-HHHTTSCTTTCEEEECSCC
T ss_pred             CCchHHHH-HHHHHhhcCCeEEEEEEcc
Confidence            88754333 334455 455899998865

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.37  E-value=0.0013  Score=60.17  Aligned_cols=98  Identities=12%  Similarity=0.133  Sum_probs=70.1

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCcee------cCH-HHHhc-----cCcEEEEcC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEV------TTM-EEAAK-----EGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v------~~L-eell~-----~aDiIi~at  411 (718)
                      -.|.+|.|+|. |.||..+++.++.+|. +|++++.++.+...+...|...      .+. +++.+     ..|+++.++
T Consensus        26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~  105 (170)
T d1jvba2          26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLN  105 (170)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESC
T ss_pred             CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhccc
Confidence            36899999995 9999999999999995 8999998886644444445321      122 33332     378999988


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCCC--ccccHH
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHFD--CEIQVS  444 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRgd--~Eid~~  444 (718)
                      +....++ ..++.++++..++.+|-..  .+++..
T Consensus       106 g~~~~~~-~a~~~l~~~G~iv~~G~~~~~~~~~~~  139 (170)
T d1jvba2         106 NSEKTLS-VYPKALAKQGKYVMVGLFGADLHYHAP  139 (170)
T ss_dssp             CCHHHHT-TGGGGEEEEEEEEECCSSCCCCCCCHH
T ss_pred             ccchHHH-hhhhhcccCCEEEEeccccCccccCHH
Confidence            8755554 5678899999999998643  344443

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0013  Score=60.55  Aligned_cols=89  Identities=19%  Similarity=0.199  Sum_probs=65.3

Q ss_pred             cCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh------ccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA------KEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell------~~aDiIi~atgt  413 (718)
                      .|++|.|+|. |.||....+.++.+|++|+++..++.+...+...|.. +     .++.+.+      +..|+++.+.+.
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~i~~~t~~~g~d~v~d~~g~  107 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAHEVFNHREVNYIDKIKKYVGEKGIDIIIEMLAN  107 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSTTHHHHHHHHHCTTCEEEEEESCHH
T ss_pred             CCCEEEEEeccccccccccccccccCcccccccccccccccccccCcccccccccccHHHHhhhhhccCCceEEeecccH
Confidence            6899999995 9999999999999999999988776544334444542 2     1333333      236888888775


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      . . -...++.|+++..++.+|..
T Consensus       108 ~-~-~~~~~~~l~~~G~iv~~G~~  129 (174)
T d1yb5a2         108 V-N-LSKDLSLLSHGGRVIVVGSR  129 (174)
T ss_dssp             H-H-HHHHHHHEEEEEEEEECCCC
T ss_pred             H-H-HHHHHhccCCCCEEEEEecC
Confidence            3 2 24568899999999999854

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.35  E-value=0.0028  Score=59.13  Aligned_cols=86  Identities=13%  Similarity=0.194  Sum_probs=57.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH-HHhhcC---------------ceecCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL-QASMEG---------------YEVTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al-~a~~~G---------------~~v~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|..|.++|..|..-|-+|.++.++..... .....+               ....+++++++.+|+|+.+..
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp   80 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS   80 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence            5899999999999999999999999999865322211 111010               012468899999999999877


Q ss_pred             CCCCcC--HHHHhcCCCCeEEEEc
Q psy7896         413 CKDIIR--GEHFLQMRDDAIVCNI  434 (718)
Q Consensus       413 t~~lI~--~e~l~~MK~gAiLIN~  434 (718)
                      ..++-+  .+....+++..+++.+
T Consensus        81 s~~~~~~~~~l~~~l~~~~ii~~t  104 (180)
T d1txga2          81 TDGVLPVMSRILPYLKDQYIVLIS  104 (180)
T ss_dssp             GGGHHHHHHHHTTTCCSCEEEECC
T ss_pred             hhhhHHHHHhhccccccceecccc
Confidence            654421  1223345666665554

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=96.33  E-value=0.0038  Score=56.86  Aligned_cols=102  Identities=14%  Similarity=0.115  Sum_probs=75.4

Q ss_pred             ccCcEEEEEec---ChhHHHHHHHHHhCCCEEEEEecCCccH-----HHHhhcCc---eecCHHHHhccCcEEEEcC---
Q psy7896         346 LAGKVAVVAGY---GDVGKGCAQSLRLFGSRVIVTEIDPINA-----LQASMEGY---EVTTMEEAAKEGGIFVTTT---  411 (718)
Q Consensus       346 L~GktVGIIG~---G~IG~~vA~~l~~fGa~Viv~d~dp~~a-----l~a~~~G~---~v~~Leell~~aDiIi~at---  411 (718)
                      |.|++|++||=   +++.+..+..+..||+++.++-+.....     ......+.   ...+++++++.+|+|.+..   
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~~~   81 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQK   81 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCCG
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecccc
Confidence            68999999999   6899999999999999999985433221     11112222   2468999999999988741   


Q ss_pred             ------------CCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         412 ------------GCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       412 ------------gt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                                  -....++.+.++.+|+.+++.-+.+-+.||+.+-+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHplPRg~EI~~~V~d  129 (157)
T d1ml4a2          82 ERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVDEIHPEVDN  129 (157)
T ss_dssp             GGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSSSBCGGGGG
T ss_pred             ccccchhhHHhhcchhccCHHHHhhcCCCeEEecCCCcCceecccccC
Confidence                        112347888899999999999998766788765443

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.32  E-value=0.0023  Score=60.68  Aligned_cols=92  Identities=27%  Similarity=0.369  Sum_probs=65.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCceec------CHHH----Hhc--cCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYEVT------TMEE----AAK--EGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~v~------~Lee----ll~--~aDiIi~atg  412 (718)
                      -.|.+|.|+|.|.||...++.++.+|+ +|+++|.++.+...+...|...+      ++.+    +..  ..|+++-+.|
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG  103 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG  103 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence            368999999999999999999999999 78899998877655555665432      2222    222  3789888765


Q ss_pred             CCC------C--------cCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKD------I--------IRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~------l--------I~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ...      .        .-...+..++++..++.+|-.
T Consensus       104 ~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~  142 (195)
T d1kola2         104 FEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLY  142 (195)
T ss_dssp             TTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCC
T ss_pred             ccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeec
Confidence            221      0        112456677899888888864

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=96.30  E-value=0.0043  Score=57.55  Aligned_cols=92  Identities=16%  Similarity=0.130  Sum_probs=64.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-----C--HHHHhc-----cCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-----T--MEEAAK-----EGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-----~--Leell~-----~aDiIi~a  410 (718)
                      --.|.+|.|+|.|.||...++.++.+|+ +|++.|+++.+...+...|.. +.     +  .++..+     ..|+++.+
T Consensus        25 ~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~  104 (174)
T d1p0fa2          25 VTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVEC  104 (174)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEc
Confidence            4578999999999999999999999997 788999888775555555543 21     1  333332     47999999


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      ++....+........+.+..++-+|-
T Consensus       105 ~g~~~~~~~~~~~~~~~~G~~v~vG~  130 (174)
T d1p0fa2         105 AGRIETMMNALQSTYCGSGVTVVLGL  130 (174)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred             CCCchHHHHHHHHHHHhcCceEEEEE
Confidence            88765544333334454456666664

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.0034  Score=58.85  Aligned_cols=67  Identities=16%  Similarity=0.114  Sum_probs=50.1

Q ss_pred             cCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee--------cCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV--------TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v--------~~Leell~~aDiIi~atgt  413 (718)
                      ..|+|.|+| .|.||+.+++.|...|.+|+++.++|.+.......+.++        .+++++++.+|+|+.+.+.
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~   77 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT   77 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence            468999999 699999999999999999999998886532222233332        2356778888988877654

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.27  E-value=0.012  Score=54.18  Aligned_cols=104  Identities=16%  Similarity=0.210  Sum_probs=74.8

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccH----HH-----HhhcC--c-eecCHHHHhccCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINA----LQ-----ASMEG--Y-EVTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~a----l~-----a~~~G--~-~v~~Leell~~aDiIi~at  411 (718)
                      +|.|++|++||-|+ +....+..+..||+++.++-+.....    ..     +...+  + ...+++++++.+|+|.+..
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~   80 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV   80 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence            47899999999875 77888999999999999985432211    01     01111  1 2458999999999999741


Q ss_pred             ----C------------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896         412 ----G------------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLDK  448 (718)
Q Consensus       412 ----g------------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~~  448 (718)
                          +            ....++.+.++.+|+++++.-++-  -..||+.+....
T Consensus        81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~~v~~~  135 (163)
T d1pvva2          81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDDVIDS  135 (163)
T ss_dssp             CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHHHHTS
T ss_pred             eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccchhhhcC
Confidence                1            123589999999999999999986  336788665543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=96.25  E-value=0.0063  Score=54.74  Aligned_cols=64  Identities=19%  Similarity=0.164  Sum_probs=45.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHH-HH--hhc-------Cce--ecCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QA--SME-------GYE--VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a--~~~-------G~~--v~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|+||+.+|..+...|  -++.++|+++.+.. ++  ..+       ...  ..+-.+.++++|+++.+.|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag   78 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence            47999999999999999987766  48999998876421 11  000       111  1244577899999998755

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.23  E-value=0.0038  Score=58.50  Aligned_cols=64  Identities=23%  Similarity=0.240  Sum_probs=45.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcC-------------------ce-ecCHHHHhccCcEEE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG-------------------YE-VTTMEEAAKEGGIFV  408 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G-------------------~~-v~~Leell~~aDiIi  408 (718)
                      ++|+|||.|.+|..+|..+ +.|.+|+++|.++.+-. ....|                   +. ..+......++|+++
T Consensus         1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~-~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~   78 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVD-KINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVI   78 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHH-HHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEE
T ss_pred             CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHH-HHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhcccccc
Confidence            5799999999999999877 57999999999875321 11111                   11 224556677899999


Q ss_pred             EcCCCC
Q psy7896         409 TTTGCK  414 (718)
Q Consensus       409 ~atgt~  414 (718)
                      .+++|.
T Consensus        79 v~vpt~   84 (196)
T d1dlja2          79 IATPTN   84 (196)
T ss_dssp             ECCCCC
T ss_pred             ccCCcc
Confidence            887764

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.20  E-value=0.001  Score=62.28  Aligned_cols=35  Identities=31%  Similarity=0.362  Sum_probs=32.9

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ||||+|||.|+.|+.+|..|++.|++|+|+|..+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            69999999999999999999999999999997664

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.07  E-value=0.0062  Score=55.02  Aligned_cols=65  Identities=25%  Similarity=0.264  Sum_probs=43.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-H--hhc-----Cc--ee--cCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-A--SME-----GY--EV--TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a--~~~-----G~--~v--~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|+||..+|-.+...+. ++.++|.++..+.. +  ..+     +.  .+  ..--+.++++|+|+.+.|.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~   79 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGA   79 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeec
Confidence            689999999999999987765454 89999987754311 1  011     11  11  1222456889999987653

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.04  E-value=0.0076  Score=54.30  Aligned_cols=88  Identities=19%  Similarity=0.260  Sum_probs=55.0

Q ss_pred             cEEEEEecChhHHHHHHHHH--hCCCEEEEEecCCccHHH-Hh--hcC------ce-ecCHHHHhccCcEEEEcCCCC--
Q psy7896         349 KVAVVAGYGDVGKGCAQSLR--LFGSRVIVTEIDPINALQ-AS--MEG------YE-VTTMEEAAKEGGIFVTTTGCK--  414 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~--~fGa~Viv~d~dp~~al~-a~--~~G------~~-v~~Leell~~aDiIi~atgt~--  414 (718)
                      .+|+|||.|+||+.+|-.+.  ++..++.++|+++.+... +.  .++      .. ...-.+.++.||+|+.+.|..  
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~   80 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGVPQK   80 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEecccccC
Confidence            47999999999999998774  555689999988754211 10  111      11 122345689999999875532  


Q ss_pred             -CCcC--------------HHHHhcCCCCeEEEEcCC
Q psy7896         415 -DIIR--------------GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       415 -~lI~--------------~e~l~~MK~gAiLIN~GR  436 (718)
                       +.-.              .+.+....|+++++|++.
T Consensus        81 ~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          81 PGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             CCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence             2211              123444567777777654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.03  E-value=0.0031  Score=57.50  Aligned_cols=66  Identities=18%  Similarity=0.296  Sum_probs=44.5

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHH-HH-------hhcCce---ecCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QA-------SMEGYE---VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a-------~~~G~~---v~~Leell~~aDiIi~atgt  413 (718)
                      ..++|+|||.|.||..+|..+...|  -++.++|+++.++. ++       ...+..   ..+. +.++.||+|+.+.|.
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~-~~~~~adivvitag~   82 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEY-SDCKDADLVVITAGA   82 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCG-GGGTTCSEEEECCCC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccH-HHhccccEEEEeccc
Confidence            4579999999999999999887655  58999998875321 11       111111   1233 446788888887654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.02  E-value=0.0031  Score=57.96  Aligned_cols=90  Identities=13%  Similarity=0.173  Sum_probs=65.3

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee------cCHHHHh------ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV------TTMEEAA------KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v------~~Leell------~~aDiIi~atg  412 (718)
                      -.|++|.|.|. |.||+.+++.++.+|++|+++..++.+...+...|...      .++.+-+      +..|+++.+.+
T Consensus        24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga~~vi~~~~~~~~~~v~~~t~~~g~d~v~d~~g  103 (183)
T d1pqwa_          24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGVEYVGDSRSVDFADEILELTDGYGVDVVLNSLA  103 (183)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCCSEEEETTCSTHHHHHHHHTTTCCEEEEEECCC
T ss_pred             CCCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccccccccCCccCHHHHHHHHhCCCCEEEEEeccc
Confidence            35899999995 99999999999999999999876665433333445321      1333333      24799988887


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .. .+ .+.++.+++++.++++|..
T Consensus       104 ~~-~~-~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_         104 GE-AI-QRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             TH-HH-HHHHHTEEEEEEEEECSCG
T ss_pred             ch-HH-HHHHHHhcCCCEEEEEccC
Confidence            63 23 4678899999999999864

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.99  E-value=0.015  Score=59.18  Aligned_cols=100  Identities=23%  Similarity=0.240  Sum_probs=73.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh-CCC-EEEEEecCCccHHH----HhhcCce-ecCHHHHhccCcEEEEcCC-CCCCcC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL-FGS-RVIVTEIDPINALQ----ASMEGYE-VTTMEEAAKEGGIFVTTTG-CKDIIR  418 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~-fGa-~Viv~d~dp~~al~----a~~~G~~-v~~Leell~~aDiIi~atg-t~~lI~  418 (718)
                      .-++++|||.|..++..++.+.. +.. +|.++++++.+...    ....+.. ..+.++.++.||+|+++|. +.-+++
T Consensus       124 ~~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~~P~~~  203 (320)
T d1omoa_         124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSRKPVVK  203 (320)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCSSCCBC
T ss_pred             CccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCcccccc
Confidence            34789999999999999887754 665 79999888754321    1122333 3466788899999999865 455777


Q ss_pred             HHHHhcCCCCeEEEEcCCC---CccccHHHHhcc
Q psy7896         419 GEHFLQMRDDAIVCNIGHF---DCEIQVSWLDKN  449 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GRg---d~Eid~~aL~~~  449 (718)
                      .+   .+|+|+.+..+|..   ..|+|.+.+...
T Consensus       204 ~~---~l~~G~hv~~iGs~~p~~~Eld~~~~~~a  234 (320)
T d1omoa_         204 AE---WVEEGTHINAIGADGPGKQELDVEILKKA  234 (320)
T ss_dssp             GG---GCCTTCEEEECSCCSTTCCCBCHHHHHTE
T ss_pred             hh---hcCCCCeEeecCCccccccccCHHHhhcC
Confidence            54   58999999999974   358888777653

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.97  E-value=0.0067  Score=54.55  Aligned_cols=64  Identities=16%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHH----HHhhcCceec--------CHHHH-hccCcEEEEcCCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL----QASMEGYEVT--------TMEEA-AKEGGIFVTTTGC  413 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al----~a~~~G~~v~--------~Leel-l~~aDiIi~atgt  413 (718)
                      .+.|+|+|++|+.+++.|...|.+|+++|.||.+..    +....|+.+.        .|+++ +.++|.|+.++++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~   81 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN   81 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence            589999999999999999999999999999885321    2223455432        13333 4567777776654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=95.87  E-value=0.0098  Score=54.35  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=45.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHH-H-------hhcCce----ecCHHHHhccCcEEEEcCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ-A-------SMEGYE----VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~-a-------~~~G~~----v~~Leell~~aDiIi~atg  412 (718)
                      ..+|+|||.|.||+.+|-.+..-+. ++.++|+++.++.. +       ...+..    ..+..+.++.+|+|+++.+
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag   80 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAG   80 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecc
Confidence            3689999999999999988865554 88899988854311 1       011111    1234577899999998755

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=95.87  E-value=0.0029  Score=55.52  Aligned_cols=36  Identities=25%  Similarity=0.422  Sum_probs=34.0

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      |+.+|+|+|.+|..+|+.|.+.|+.|+++|.++.+.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~   36 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKV   36 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHH
Confidence            578999999999999999999999999999999976

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.83  E-value=0.0062  Score=55.72  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=42.3

Q ss_pred             hHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       254 s~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      ..+.++.++  ....|.+++|+|.|++|.-.++.++.+|++|++++.++.+.
T Consensus        15 Ta~~al~~~--~~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~   64 (168)
T d1piwa2          15 TVYSPLVRN--GCGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKR   64 (168)
T ss_dssp             HHHHHHHHT--TCSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTH
T ss_pred             HHHHHHHHh--CcCCCCEEEEECCCCcchhHHHHhhhccccccccccchhHH
Confidence            345666653  35789999999999999999999999999999999888865

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=95.81  E-value=0.0049  Score=56.15  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=29.8

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPIN  383 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~  383 (718)
                      |+|+|||.|+||..+|-.+...|  .++.++|+++.+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~   38 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAK   38 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccch
Confidence            79999999999999999886555  489999987754

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=95.81  E-value=0.016  Score=53.06  Aligned_cols=91  Identities=18%  Similarity=0.229  Sum_probs=63.1

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ec-------CHHHHh-----ccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VT-------TMEEAA-----KEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~-------~Leell-----~~aDiIi~a  410 (718)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++.++++.+...+...|.. +.       ..++..     ...|+++.+
T Consensus        26 vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~  105 (176)
T d2jhfa2          26 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEV  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEec
Confidence            4478999999999999999999999996 899999888876555555543 11       133332     247999998


Q ss_pred             CCCCCCcCHHHHhcCCCC-eEEEEcCC
Q psy7896         411 TGCKDIIRGEHFLQMRDD-AIVCNIGH  436 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~g-AiLIN~GR  436 (718)
                      +|....+. ..+..++.+ .+++-.+.
T Consensus       106 ~G~~~~~~-~a~~~~~~~~g~~~~~~~  131 (176)
T d2jhfa2         106 IGRLDTMV-TALSCCQEAYGVSVIVGV  131 (176)
T ss_dssp             SCCHHHHH-HHHHHBCTTTCEEEECSC
T ss_pred             CCchhHHH-HHHHHHhcCCcceEEecC
Confidence            88764443 345566664 44454444

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.70  E-value=0.0053  Score=56.89  Aligned_cols=69  Identities=14%  Similarity=0.110  Sum_probs=50.7

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh---h----c----CceecCHHHHhccCcEEEEcC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS---M----E----GYEVTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~---~----~----G~~v~~Leell~~aDiIi~at  411 (718)
                      +.+++||+|.|+|.|..+++++..|...| +|.++.+++.++.+-.   .    .    .+...+++..+..+|+++.+|
T Consensus        13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t   91 (177)
T d1nvta1          13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT   91 (177)
T ss_dssp             HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence            45689999999999999999999998887 9999998876542211   0    0    113344555667788888876


Q ss_pred             C
Q psy7896         412 G  412 (718)
Q Consensus       412 g  412 (718)
                      .
T Consensus        92 p   92 (177)
T d1nvta1          92 P   92 (177)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.68  E-value=0.0042  Score=55.53  Aligned_cols=36  Identities=28%  Similarity=0.419  Sum_probs=32.8

Q ss_pred             cEEEEE-ecChhHHHHHHHHHhCCCEEEEEecCCccH
Q psy7896         349 KVAVVA-GYGDVGKGCAQSLRLFGSRVIVTEIDPINA  384 (718)
Q Consensus       349 ktVGII-G~G~IG~~vA~~l~~fGa~Viv~d~dp~~a  384 (718)
                      ++|+|| |.|.||+++|+.|...|.+|++++++|.+.
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~   37 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKA   37 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            479999 789999999999999999999999998653

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.65  E-value=0.0026  Score=59.12  Aligned_cols=68  Identities=19%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHH-HH--hhcC-----c-ee--cCHHHHhccCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINAL-QA--SMEG-----Y-EV--TTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al-~a--~~~G-----~-~v--~~Leell~~aDiIi~at  411 (718)
                      .+..++|+|||.|+||..+|-.+...|.  ++.++|.++..+. ++  ..++     . ..  ..-.+.+++||+|+.+.
T Consensus        17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA   96 (160)
T d1i0za1          17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA   96 (160)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence            4567899999999999999999987776  8999998765431 11  1111     0 11  11235678899888875


Q ss_pred             C
Q psy7896         412 G  412 (718)
Q Consensus       412 g  412 (718)
                      |
T Consensus        97 g   97 (160)
T d1i0za1          97 G   97 (160)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.56  E-value=0.0098  Score=54.02  Aligned_cols=38  Identities=24%  Similarity=0.323  Sum_probs=31.6

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~  383 (718)
                      -.+++|+|||.|.||+.+|..+...|  -++.++|+++.+
T Consensus         4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~   43 (148)
T d1ldna1           4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESK   43 (148)
T ss_dssp             TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeecccc
Confidence            35789999999999999999886544  489999987754

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.54  E-value=0.023  Score=51.55  Aligned_cols=101  Identities=16%  Similarity=0.063  Sum_probs=70.8

Q ss_pred             ccCcEEEEEec---ChhHHHHHHHHHhCCCEEEEEecCCcc---HHHHhhcCce---ecCHHHHhccCcEEEEcC---C-
Q psy7896         346 LAGKVAVVAGY---GDVGKGCAQSLRLFGSRVIVTEIDPIN---ALQASMEGYE---VTTMEEAAKEGGIFVTTT---G-  412 (718)
Q Consensus       346 L~GktVGIIG~---G~IG~~vA~~l~~fGa~Viv~d~dp~~---al~a~~~G~~---v~~Leell~~aDiIi~at---g-  412 (718)
                      |.|++|++||=   +++.+..+..+..||++++++-+.+..   .......|..   +.+++++++.+|+|.+..   + 
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~   80 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER   80 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence            57999999997   459999999999999987654332221   1111112322   347899999999987631   0 


Q ss_pred             -----------CCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHH
Q psy7896         413 -----------CKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWL  446 (718)
Q Consensus       413 -----------t~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL  446 (718)
                                 ....++.+.++.+|+++++.-++--+.||+.+..
T Consensus        81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~EI~~~v~  125 (153)
T d1pg5a2          81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVNEIDRKVD  125 (153)
T ss_dssp             SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSSSBCGGGG
T ss_pred             ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcCCcchhhc
Confidence                       1224899999999999999999864457775533

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.46  E-value=0.0083  Score=56.62  Aligned_cols=87  Identities=18%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHh--h------cCc------e-ecCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS--M------EGY------E-VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~--~------~G~------~-v~~Leell~~aDiIi~atgt  413 (718)
                      ++|+|||.|.-|.++|..|..-|.+|+++.+++.......  .      .++      . ..+++++++++|+|+.+..+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs   87 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT   87 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH
Confidence            5799999999999999999999999999988765322111  0      122      1 24689999999999998765


Q ss_pred             CCCcCHHHHhc---------CCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQ---------MRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~---------MK~gAiLIN~GRg  437 (718)
                      ..+  .+.+++         .+++..++++.-|
T Consensus        88 ~~~--~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          88 QFL--RGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             HHH--HHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             HHH--HHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            422  122322         3456677887665

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=95.46  E-value=0.0099  Score=53.73  Aligned_cols=64  Identities=20%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCccHH-HH--hhcCce------ec-CHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPINAL-QA--SMEGYE------VT-TMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~~al-~a--~~~G~~------v~-~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|+||..+|-.+...|  -++.++|+++.++. ++  ..++..      .. .-.+.++.||+|+.+.|
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag   77 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAG   77 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecc
Confidence            47999999999999998886554  48999998875421 11  122211      11 12456789999998754

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.43  E-value=0.0077  Score=54.70  Aligned_cols=64  Identities=16%  Similarity=0.168  Sum_probs=45.3

Q ss_pred             EEEEEec-ChhHHHHHHHHHhCCC--EEEEEecCCccHHH-HhhcC--c-------eecCHHHHhccCcEEEEcCCC
Q psy7896         350 VAVVAGY-GDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-ASMEG--Y-------EVTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       350 tVGIIG~-G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-a~~~G--~-------~v~~Leell~~aDiIi~atgt  413 (718)
                      +|+|||. |+||+.+|..+...|.  ++.++|.++.+... ...+.  +       ...+..+.++.||+|+.+.|.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~   78 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGV   78 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSC
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCc
Confidence            7999995 9999999999987776  68889987654211 11111  1       113456889999999987553

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=95.37  E-value=0.013  Score=53.50  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=70.6

Q ss_pred             ccCcEEEEEec---ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcC-------C--
Q psy7896         346 LAGKVAVVAGY---GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTT-------G--  412 (718)
Q Consensus       346 L~GktVGIIG~---G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~at-------g--  412 (718)
                      +.|.+|++||=   +++...++..+..||+++.++.+......   .+.+. ..+++++++.+|+|.+..       .  
T Consensus         1 F~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~~---~~~~~~~~~~~ea~~~aDviy~~r~q~e~~~~~~   77 (151)
T d2at2a2           1 FKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDE---ENTFGTYVSMDEAVESSDVVMLLRIQNERHQSAV   77 (151)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhcc---ccceeEEEechhccccCceeeeeEEEEcccccch
Confidence            36899999997   68999999999999999988754332221   12222 357999999999998641       0  


Q ss_pred             ------CCCCcCHHHHhcCCCCeEEEEcCC--CCccccHHHHh
Q psy7896         413 ------CKDIIRGEHFLQMRDDAIVCNIGH--FDCEIQVSWLD  447 (718)
Q Consensus       413 ------t~~lI~~e~l~~MK~gAiLIN~GR--gd~Eid~~aL~  447 (718)
                            ....++.+.+..+++++++.-+.-  -+.||+.+.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~i~MH~LP~~Rg~EI~~~V~~  120 (151)
T d2at2a2          78 SQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEIDDSLVE  120 (151)
T ss_pred             hhHHhhhhhcchhhhhhhcccCeEEecCCccccCCccchhhhc
Confidence                  112366777888899999998864  23577755443

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.34  E-value=0.003  Score=57.71  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=33.3

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r  304 (718)
                      .+|||+|||.|++|+.+|..|+++|. .|+++|..+..
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYV   40 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSC
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcc
Confidence            47999999999999999999999999 59999977653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.33  E-value=0.012  Score=50.73  Aligned_cols=36  Identities=28%  Similarity=0.272  Sum_probs=33.0

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      -++++|+|.|++|..+|..++++|.+||+++..+..
T Consensus        22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~i   57 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEI   57 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CCeEEEECCCccceeeeeeecccccEEEEEEeccee
Confidence            489999999999999999999999999999877654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.32  E-value=0.0074  Score=49.65  Aligned_cols=35  Identities=26%  Similarity=0.279  Sum_probs=32.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      |||||+|.|--|+.++.-++.+|.+|+++|.++..
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCC
Confidence            79999999999999999999999999999877653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.30  E-value=0.0094  Score=52.11  Aligned_cols=36  Identities=28%  Similarity=0.348  Sum_probs=33.0

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      -++++|||.|++|..+|.+++.+|+.||+++..+..
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~   58 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQI   58 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEecccc
Confidence            379999999999999999999999999999887754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.26  E-value=0.015  Score=50.80  Aligned_cols=39  Identities=23%  Similarity=0.281  Sum_probs=35.1

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ...+++++|||.|.+|..+|..|+++|..|++++..+..
T Consensus        27 ~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          27 LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRL   65 (121)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSST
T ss_pred             hhcCCeEEEECcchhHHHHHHHhhcccceEEEEeecccc
Confidence            346799999999999999999999999999999987763

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.22  E-value=0.025  Score=52.73  Aligned_cols=66  Identities=26%  Similarity=0.298  Sum_probs=43.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-CEEE-EEecCCccHH-HHhhcCcee-------------------cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-SRVI-VTEIDPINAL-QASMEGYEV-------------------TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-a~Vi-v~d~dp~~al-~a~~~G~~v-------------------~~Leell~~aDi  406 (718)
                      .+|||.|||+||+.+++.+.... .+|+ +.|..|.... .+...++..                   .++.+++.++|+
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vDv   82 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDI   82 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSE
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHHHhhhcCceeecccccceeeecccCccccchhhhhhccCCE
Confidence            58999999999999999887544 5544 5666654321 122222211                   245667778999


Q ss_pred             EEEcCCCC
Q psy7896         407 FVTTTGCK  414 (718)
Q Consensus       407 Ii~atgt~  414 (718)
                      |+-|||..
T Consensus        83 ViEcTG~f   90 (172)
T d2czca2          83 IVDATPGG   90 (172)
T ss_dssp             EEECCSTT
T ss_pred             EEECCCCC
Confidence            99888763

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.21  E-value=0.0078  Score=52.67  Aligned_cols=62  Identities=18%  Similarity=0.251  Sum_probs=42.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec-----C---HHHH-hccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT-----T---MEEA-AKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~-----~---Leel-l~~aDiIi~atg  412 (718)
                      |.+.|+|+|++|+.+++.|++.  +|.+.+.+|.........|+.+.     +   |.++ +.+++.++.++.
T Consensus         1 kHivI~G~g~~g~~l~~~L~~~--~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELRGS--EVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLE   71 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSCGG--GEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCS
T ss_pred             CEEEEECCCHHHHHHHHHHcCC--CCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEecc
Confidence            5689999999999999999755  56777888876544445565432     1   2222 456677766654

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.21  E-value=0.0057  Score=55.57  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=43.0

Q ss_pred             cEEEEEecChhHHHHHHHHHh--CCCEEEEEecCCccHHH-H--hhcC------cee--cCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRL--FGSRVIVTEIDPINALQ-A--SMEG------YEV--TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~--fGa~Viv~d~dp~~al~-a--~~~G------~~v--~~Leell~~aDiIi~atgt  413 (718)
                      .+|+|||.|+||..+|-.+..  +.-++.++|.++.++.. +  ..++      ..+  .+-.+.+++||+|+.+.|.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~   79 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP   79 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccc
Confidence            479999999999999987764  44589999988754311 0  1111      111  1223567889999887653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.19  E-value=0.0098  Score=51.99  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=32.2

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      -|++.|||.|.||..+|..+..+|++|+++++.+.
T Consensus        23 p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          23 PKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCeEEEECCCchHHHHHHHHHhhCcceeEEEeccc
Confidence            47999999999999999999999999999987653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.18  E-value=0.021  Score=48.88  Aligned_cols=94  Identities=19%  Similarity=0.180  Sum_probs=67.7

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhhhhhHHHHHHHHHHhcccccccchhhhhhhccc
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYELDEEVAALHLEHLGVKLTKLTEDQAKYLDIM  345 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv~~~~~~~~~~~~~g~e  345 (718)
                      .+.||+++|+|.|.+|..-++.|.+.|+.|+|++..+..........                   .+..+.++.+....
T Consensus         9 ~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~-------------------~~i~~~~~~~~~~d   69 (113)
T d1pjqa1           9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANE-------------------GMLTLVEGPFDETL   69 (113)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTT-------------------TSCEEEESSCCGGG
T ss_pred             EeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhc-------------------CCceeeccCCCHHH
Confidence            47899999999999999999999999999999887665433222111                   01111222334456


Q ss_pred             ccCcEEEEEecCh--hHHHHHHHHHhCCCEEEEEe
Q psy7896         346 LAGKVAVVAGYGD--VGKGCAQSLRLFGSRVIVTE  378 (718)
Q Consensus       346 L~GktVGIIG~G~--IG~~vA~~l~~fGa~Viv~d  378 (718)
                      +.+..+.++-.+.  +-..+++.+++.|.-|=+.|
T Consensus        70 l~~~~lv~~at~d~~~n~~i~~~a~~~~ilVNv~D  104 (113)
T d1pjqa1          70 LDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVVD  104 (113)
T ss_dssp             GTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEETT
T ss_pred             hCCCcEEeecCCCHHHHHHHHHHHHHcCCEEEeCC
Confidence            7788888877766  57788999999998776665

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.16  E-value=0.0068  Score=55.27  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=32.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      .+|+|.|||.|.+|..+|..|+.+|+ +|+++|..+.
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence            57999999999999999999999999 5999997664

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.16  E-value=0.009  Score=55.55  Aligned_cols=35  Identities=31%  Similarity=0.362  Sum_probs=32.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ||+|.|||.|.-|...|..|+..|.+|+++|..+.
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~   35 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGK   35 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            79999999999999999999999999999997653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.14  E-value=0.015  Score=52.92  Aligned_cols=88  Identities=19%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-e-------cCHHHHh-----ccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-V-------TTMEEAA-----KEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v-------~~Leell-----~~aDiIi~a  410 (718)
                      --.|.+|.|+|.|.+|...++.++.+|+ +|++++.++.+...+...|.. +       .+..+.+     ...|+++.+
T Consensus        26 ~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~  105 (176)
T d2fzwa2          26 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFEC  105 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEEC
T ss_pred             CCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeec
Confidence            3478999999999999999999999997 677788877765444444532 1       1233333     247999988


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEE
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCN  433 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN  433 (718)
                      +|+...+. ..+..+++|..++.
T Consensus       106 ~G~~~~~~-~~~~~~~~g~~~~~  127 (176)
T d2fzwa2         106 IGNVKVMR-AALEACHKGWGVSV  127 (176)
T ss_dssp             SCCHHHHH-HHHHTBCTTTCEEE
T ss_pred             CCCHHHHH-HHHHhhcCCceeEE
Confidence            88754433 45666777644433

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.14  E-value=0.011  Score=50.83  Aligned_cols=36  Identities=28%  Similarity=0.299  Sum_probs=32.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..|++.|||.|.||..+|..+..+|.+|+++++.+.
T Consensus        21 ~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          21 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGE   56 (117)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECCCccceeeeeeecccccEEEEEEecce
Confidence            358999999999999999999999999999987654

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.13  E-value=0.021  Score=53.62  Aligned_cols=64  Identities=27%  Similarity=0.338  Sum_probs=43.6

Q ss_pred             EEEEEecChhHHHHHHHHHhC-CCEEEE-EecCCccHHHH-hh-----------------cCcee-cCHHHHhccCcEEE
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLF-GSRVIV-TEIDPINALQA-SM-----------------EGYEV-TTMEEAAKEGGIFV  408 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~f-Ga~Viv-~d~dp~~al~a-~~-----------------~G~~v-~~Leell~~aDiIi  408 (718)
                      +|||.|||+||+.++|.+... +.+|+. .|..|...... ..                 .++.+ .++++++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            799999999999999999765 457665 55555432111 11                 11111 25677888899999


Q ss_pred             EcCCC
Q psy7896         409 TTTGC  413 (718)
Q Consensus       409 ~atgt  413 (718)
                      .|||.
T Consensus        83 ecTG~   87 (178)
T d1b7go1          83 DTTPN   87 (178)
T ss_dssp             ECCST
T ss_pred             ECCCC
Confidence            99985

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.011  Score=51.17  Aligned_cols=36  Identities=17%  Similarity=0.200  Sum_probs=32.9

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      -++++|||.|++|..+|..++++|..||+++..+..
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~   56 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP   56 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecchh
Confidence            378999999999999999999999999999887654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=95.04  E-value=0.042  Score=49.82  Aligned_cols=93  Identities=16%  Similarity=0.234  Sum_probs=62.4

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccHHHHhhcCce-ecC-------HHHHh-----ccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQASMEGYE-VTT-------MEEAA-----KEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~al~a~~~G~~-v~~-------Leell-----~~aDiIi~a  410 (718)
                      --.|.+|.|+|.|.+|...+..++.+|+ +|+++|+++.+...+...|.. +.+       .++..     ...|+++.+
T Consensus        26 ~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GAd~~in~~~~~~~~~~~~~~~~~~G~d~vid~  105 (175)
T d1cdoa2          26 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLEC  105 (175)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEEC
T ss_pred             CCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCCcEEEcCCCcchhHHHHHHhhccCCcceeeee
Confidence            3478999999999999999999999888 688898888766555555642 111       22322     247999988


Q ss_pred             CCCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TGCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tgt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +|....+........+.+.+++-.|..
T Consensus       106 ~G~~~~~~~a~~~~~~g~~~~~~~g~~  132 (175)
T d1cdoa2         106 VGNVGVMRNALESCLKGWGVSVLVGWT  132 (175)
T ss_dssp             SCCHHHHHHHHHTBCTTTCEEEECSCC
T ss_pred             cCCHHHHHHHHHHhhCCCcceeEEEec
Confidence            887554433222334555666656554

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.03  E-value=0.0083  Score=57.42  Aligned_cols=37  Identities=30%  Similarity=0.245  Sum_probs=33.9

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ...|+|+|||.|+.|+.+|..|.++|++|+|+|..+.
T Consensus        28 ~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          28 SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3568999999999999999999999999999998765

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.031  Score=50.54  Aligned_cols=65  Identities=11%  Similarity=0.007  Sum_probs=46.0

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHHh-hcCce-ecCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQAS-MEGYE-VTTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a~-~~G~~-v~~Leell~~aDiIi~atgt  413 (718)
                      .+|||||+|.+|+. .+..++.. +.+++ ++|+++.++.... ..++. +.++++++++.|+|+.++.+
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~   71 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSST   71 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccc
Confidence            37999999999986 46666655 66765 5788876644322 22333 35788999999999888765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.99  E-value=0.015  Score=50.69  Aligned_cols=37  Identities=27%  Similarity=0.287  Sum_probs=33.9

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ..+++++|+|.|++|..+|..|+++|.+||+++..+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            3578999999999999999999999999999988765

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=94.98  E-value=0.005  Score=51.33  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=34.9

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      +.||+++|+|.|..|+++|++|.++|.+|+++|..+..
T Consensus         3 ~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           3 YQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             cCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            57999999999999999999999999999999986653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.95  E-value=0.0093  Score=52.21  Aligned_cols=35  Identities=26%  Similarity=0.178  Sum_probs=31.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..+++.|||.|.||..+|..++.+|.+|+++++++
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            34789999999999999999999999999998664

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.94  E-value=0.02  Score=52.76  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=46.3

Q ss_pred             cEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHH-HhhcCc-----eecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQ-ASMEGY-----EVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~-a~~~G~-----~v~~Leell~--~aDiIi~atgt  413 (718)
                      .++||||+|.+|+..++.++.. +++|+ ++|+++.++.. +...++     .+.+++++++  +.|+|+.+|.+
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~   76 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT   76 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence            3799999999999999999876 66776 56777754322 122232     2468999885  56888887765

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=94.90  E-value=0.0088  Score=55.04  Aligned_cols=65  Identities=11%  Similarity=0.274  Sum_probs=45.1

Q ss_pred             CcEEEEEecChhHHHHHHHHHhC-CCEEE-EEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLF-GSRVI-VTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCK  414 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~f-Ga~Vi-v~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~  414 (718)
                      ..+|||||+|+||+.+++.++.. +.+++ ++++++.....  ...+...+.+++..+.|+++.+|++.
T Consensus         3 kirvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~~~~--~~~~~~~~~~~~~~~~D~Vvi~tp~~   69 (170)
T d1f06a1           3 NIRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK--TPVFDVADVDKHADDVDVLFLCMGSA   69 (170)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS--SCEEEGGGGGGTTTTCSEEEECSCTT
T ss_pred             cceEEEECChHHHHHHHHHHHhCCCcEEEEEEecccccccc--cccccchhhhhhccccceEEEeCCCc
Confidence            35799999999999999999876 56655 46666543211  11123345667778899999887764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.89  E-value=0.014  Score=50.09  Aligned_cols=37  Identities=16%  Similarity=0.124  Sum_probs=33.8

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+|+|.|||.|.||..+|..++.+|.+|+++++.|.
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccch
Confidence            4589999999999999999999999999999987653

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=94.89  E-value=0.41  Score=45.83  Aligned_cols=81  Identities=15%  Similarity=-0.067  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHcCCeEEeeccCcCCch--------HHHHHHHHhcCceEEEeeCCChHHHHHHHHHHhhcceecCCCCeEE
Q psy7896         552 TAVLIETLLELGAEVQWSSCNIFSTQ--------DHAAAAIAARGVAVYAWKGETDEEYVWCIEQTLVDRYTLPNGNHII  623 (718)
Q Consensus       552 Ta~L~~~l~~~GA~v~~~~~nplstq--------d~vaaal~~~gi~v~a~~ge~~eey~~~~~~~l~~~~~~~~~~~~i  623 (718)
                      |-.++..|..-|-.|+.++.-|.-|.        ++........ .+  ..|--++||--+.+.-.+++...+=+|-.|.
T Consensus       168 tr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~~~~~~~~~~~~~-~p--~~r~~~pedIA~~v~fL~S~~s~~itG~~i~  244 (274)
T d2pd4a1         168 VRYLAVDLGKHHIRVNALSAGPIRTLASSGIADFRMILKWNEIN-AP--LRKNVSLEEVGNAGMYLLSSLSSGVSGEVHF  244 (274)
T ss_dssp             HHHHHHHHHTTTCEEEEEEECCCCCTTGGGSTTHHHHHHHHHHH-ST--TSSCCCHHHHHHHHHHHHSGGGTTCCSCEEE
T ss_pred             HHhhHHHhcCcCceecccccCcccCccccccCchHHHHHHHhhh-hh--ccCCcCHHHHHHHHHHHhChhhCCCcCceEE
Confidence            44567777888889999988887772        3333333221 11  2345678888888777776544445777777


Q ss_pred             EecCCccccccc
Q psy7896         624 LLAEGRLVNLGC  635 (718)
Q Consensus       624 ~ddggdl~~~~~  635 (718)
                      +|.|=.+.-++.
T Consensus       245 vDGG~~~~g~~~  256 (274)
T d2pd4a1         245 VDAGYHVMGMGA  256 (274)
T ss_dssp             ESTTGGGBSSCC
T ss_pred             ECCChhhccCCc
Confidence            777766554443

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=94.88  E-value=0.0098  Score=56.98  Aligned_cols=62  Identities=23%  Similarity=0.321  Sum_probs=48.0

Q ss_pred             cccchhhHHHHHhhhccc-ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhh
Q psy7896         248 LYGCRESLVDGLKRATDI-MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASM  310 (718)
Q Consensus       248 ~~G~~es~~~~i~r~t~~-~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~Ava  310 (718)
                      -||.-+++-..+.+ .+. .+.|++++|-|+|.+|..+|+.|.+.|.+|+++|.++.+...+..
T Consensus         6 a~Gv~~~~~~~~~~-~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~   68 (201)
T d1c1da1           6 AVGVFEAMKATVAH-RGLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVA   68 (201)
T ss_dssp             HHHHHHHHHHHHHH-TTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHh
Confidence            34544555444444 454 589999999999999999999999999999999998876544433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.013  Score=50.49  Aligned_cols=35  Identities=17%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|+|.|||.|.||..+|..++.+|.+|+++++.+.
T Consensus        21 p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          21 PERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDA   55 (116)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCEEEEECCChhhHHHHHHhhccccEEEEEeecch
Confidence            47899999999999999999999999999987663

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.86  E-value=0.014  Score=50.78  Aligned_cols=34  Identities=12%  Similarity=0.137  Sum_probs=31.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .|+|.|||.|.||..+|..++++|.+|+++++.+
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhc
Confidence            5899999999999999999999999999998754

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.83  E-value=0.03  Score=52.10  Aligned_cols=65  Identities=32%  Similarity=0.471  Sum_probs=43.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-CEEE-EEecCCccHH-HHhhcCc------------------ee-cCHHHHhccCcE
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-SRVI-VTEIDPINAL-QASMEGY------------------EV-TTMEEAAKEGGI  406 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-a~Vi-v~d~dp~~al-~a~~~G~------------------~v-~~Leell~~aDi  406 (718)
                      ++|||-|||+||+.+.|.+...+ .+|+ +.|..|.... .+...++                  .+ .+..++++++|+
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv   81 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI   81 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence            58999999999999999886655 5655 4555553211 1112221                  11 145667788999


Q ss_pred             EEEcCCC
Q psy7896         407 FVTTTGC  413 (718)
Q Consensus       407 Ii~atgt  413 (718)
                      |+.|||.
T Consensus        82 ViEcTG~   88 (171)
T d1cf2o1          82 VIDCTPE   88 (171)
T ss_dssp             EEECCST
T ss_pred             EEEccCC
Confidence            9999886

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.72  E-value=0.019  Score=52.00  Aligned_cols=47  Identities=23%  Similarity=0.358  Sum_probs=40.0

Q ss_pred             HHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         257 DGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       257 ~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .++.++  -+..|.+++|+|.|++|.-+++.++.+|.+|+++|.++.+.
T Consensus        17 ~a~~~~--~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~   63 (170)
T d1e3ja2          17 HACRRA--GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRL   63 (170)
T ss_dssp             HHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             HHHHHh--CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHH
Confidence            344443  25689999999999999999999999999999999988875

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.70  E-value=0.0082  Score=55.53  Aligned_cols=68  Identities=24%  Similarity=0.284  Sum_probs=44.3

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHH-HH--h-----hcCcee---cCHHHHhccCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINAL-QA--S-----MEGYEV---TTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al-~a--~-----~~G~~v---~~Leell~~aDiIi~at  411 (718)
                      .+.-.+|+|||.|+||..+|-.+...|.  ++.++|.++.++. ++  .     ..+...   ..-.+.++.||+|+.+.
T Consensus        16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita   95 (159)
T d2ldxa1          16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA   95 (159)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence            3455689999999999999998876655  8999998764421 11  0     111111   11234557888888765


Q ss_pred             C
Q psy7896         412 G  412 (718)
Q Consensus       412 g  412 (718)
                      |
T Consensus        96 g   96 (159)
T d2ldxa1          96 G   96 (159)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.67  E-value=0.065  Score=47.33  Aligned_cols=88  Identities=9%  Similarity=0.018  Sum_probs=62.3

Q ss_pred             cccCcEEEEEecC----------hhHHHHHHHHHhCCCEEEEEecCCccHHHH--------h------hcCceecCHHHH
Q psy7896         345 MLAGKVAVVAGYG----------DVGKGCAQSLRLFGSRVIVTEIDPINALQA--------S------MEGYEVTTMEEA  400 (718)
Q Consensus       345 eL~GktVGIIG~G----------~IG~~vA~~l~~fGa~Viv~d~dp~~al~a--------~------~~G~~v~~Leel  400 (718)
                      .+.+++|+|+|+-          .-...+++.|...|++|.+||  |......        .      .....+.+++++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~D--P~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~   87 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFD--RNVEYARVHGANKEYIESKIPHVSSLLVSDLDEV   87 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEEC--HHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccC--CCCCHHHHhhhhhhhhhhccccccceeehhhhhh
Confidence            4678999999973          347889999999999999995  4211100        0      011234689999


Q ss_pred             hccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         401 AKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       401 l~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      ++.+|+|++++.....  .+....++++.+++++=+
T Consensus        88 i~~~D~ivi~t~h~~f--~~l~~~~~~~~~I~D~~~  121 (136)
T d1mv8a3          88 VASSDVLVLGNGDELF--VDLVNKTPSGKKLVDLVG  121 (136)
T ss_dssp             HHHCSEEEECSCCGGG--HHHHHSCCTTCEEEESSS
T ss_pred             hhhceEEEEEeCCHHH--HHHHHHhcCCCEEEECCC
Confidence            9999999999877543  234556777888888633

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.66  E-value=0.0077  Score=53.39  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=32.1

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcC--CeEEEeecCch
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPI  303 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~G--v~VtV~D~dp~  303 (718)
                      +||+|+|||.|++|+.+|..|++++  +.|++++.++.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            5899999999999999999999998  47888887664

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.63  E-value=0.019  Score=49.74  Aligned_cols=38  Identities=21%  Similarity=0.084  Sum_probs=33.8

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      .-.++++|+|.|.+|...|..++++|+.|++++..+..
T Consensus        20 ~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~l   57 (119)
T d3lada2          20 NVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKF   57 (119)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             cCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeeccc
Confidence            34589999999999999999999999999999876653

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.62  E-value=0.014  Score=51.64  Aligned_cols=36  Identities=31%  Similarity=0.371  Sum_probs=31.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC--CEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp~  382 (718)
                      .||+|.|||.|.+|..+|..|+.+|  .+|++++++|.
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~   38 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTD   38 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSC
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCc
Confidence            4899999999999999999999887  58999987763

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=94.62  E-value=0.018  Score=53.24  Aligned_cols=42  Identities=12%  Similarity=0.183  Sum_probs=37.3

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  384 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~a  384 (718)
                      +..+.||+|.|+|.|..+++++..|...+.+|+++.+++.++
T Consensus        13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a   54 (171)
T d1p77a1          13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKT   54 (171)
T ss_dssp             TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHH
T ss_pred             CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHH
Confidence            567899999999999999999999988888999999887553

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.56  E-value=0.02  Score=50.71  Aligned_cols=39  Identities=21%  Similarity=0.181  Sum_probs=35.2

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ...+++++|||.|++|..+|..|+.+|..|++++..+..
T Consensus        32 ~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          32 LIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV   70 (133)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             hccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccc
Confidence            346899999999999999999999999999999987664

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=94.54  E-value=0.025  Score=51.97  Aligned_cols=50  Identities=26%  Similarity=0.287  Sum_probs=41.1

Q ss_pred             HHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         255 LVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       255 ~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .+.++.+. .....|.+|+|+|.|++|.-+++.++.+|+ +|++++.++.+.
T Consensus        16 a~~al~~~-~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~   66 (182)
T d1vj0a2          16 AYHAFDEY-PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRL   66 (182)
T ss_dssp             HHHHHHTC-SSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHH
T ss_pred             HHHHHHHH-hCCCCCCEEEEECCCccchhheecccccccccccccccccccc
Confidence            34555443 235689999999999999999999999998 899999988875

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.53  E-value=0.02  Score=49.69  Aligned_cols=35  Identities=23%  Similarity=0.169  Sum_probs=32.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..+++.|||.|.||..+|..++.+|++|++++..+
T Consensus        21 ~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~   55 (119)
T d3lada2          21 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD   55 (119)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CCCeEEEECCChHHHHHHHHHHHcCCceEEEEeec
Confidence            45899999999999999999999999999988654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.53  E-value=0.6  Score=44.64  Aligned_cols=40  Identities=33%  Similarity=0.643  Sum_probs=35.8

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ..|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            468999999999886 9999999999999999999987643

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.50  E-value=0.021  Score=49.79  Aligned_cols=37  Identities=27%  Similarity=0.287  Sum_probs=33.7

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      -.+|+|.|||.|.||..+|..++.+|.+|++++..+.
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~   64 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDR   64 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCc
Confidence            3579999999999999999999999999999987653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.47  E-value=0.011  Score=51.59  Aligned_cols=36  Identities=31%  Similarity=0.300  Sum_probs=33.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+++.|||.|.||..+|..++.+|++|++.++.+.
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASE   59 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccc
Confidence            358999999999999999999999999999987664

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.45  E-value=0.021  Score=49.01  Aligned_cols=38  Identities=16%  Similarity=0.094  Sum_probs=34.5

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ..+++++|+|.|++|...|..|+.+|..|++++..+..
T Consensus        20 ~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          20 EPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPL   57 (121)
T ss_dssp             CCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchh
Confidence            35899999999999999999999999999999887653

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.45  E-value=0.025  Score=51.53  Aligned_cols=90  Identities=16%  Similarity=0.124  Sum_probs=60.6

Q ss_pred             ccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-e-----cCHHHHh------ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-V-----TTMEEAA------KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v-----~~Leell------~~aDiIi~atg  412 (718)
                      -.|++|.|+|.| .+|+.+++.++.+|++|++++.++.+...+...|.. +     .++.+-+      +..|+++.+.+
T Consensus        27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa~~vi~~~~~d~~~~v~~~t~g~g~d~v~d~~g  106 (179)
T d1qora2          27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGAWQVINYREEDLVERLKEITGGKKVRVVYDSVG  106 (179)
T ss_dssp             CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTCCEEEEEECSC
T ss_pred             CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCCeEEEECCCCCHHHHHHHHhCCCCeEEEEeCcc
Confidence            358999999555 599999999999999999998887654333334432 1     1333322      12477777665


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .. . -...+..++++..++..|..
T Consensus       107 ~~-~-~~~~~~~l~~~G~~v~~g~~  129 (179)
T d1qora2         107 RD-T-WERSLDCLQRRGLMVSFGNS  129 (179)
T ss_dssp             GG-G-HHHHHHTEEEEEEEEECCCT
T ss_pred             HH-H-HHHHHHHHhcCCeeeecccc
Confidence            43 2 24567788888888887654

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.02  Score=50.07  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=31.7

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .|++.|||.|.||..+|..++.+|.+|+++++.+
T Consensus        22 pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          22 PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD   55 (125)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCEEEEEcCCccHHHHHHHHhcCCcEEEEEeecc
Confidence            4899999999999999999999999999998765

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.41  E-value=0.029  Score=50.56  Aligned_cols=49  Identities=27%  Similarity=0.422  Sum_probs=41.5

Q ss_pred             HHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         255 LVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       255 ~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .+.++.++  .+..|++++|+|.|++|..+++.++.+|.+|++++.++.+.
T Consensus        16 a~~al~~~--~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~   64 (166)
T d1llua2          16 VYKGLKQT--NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKL   64 (166)
T ss_dssp             HHHHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             HHHHHHHh--CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHH
Confidence            34566553  35689999999999999999999999999999999888765

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.39  E-value=0.016  Score=51.78  Aligned_cols=39  Identities=26%  Similarity=0.141  Sum_probs=35.9

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL  306 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v  306 (718)
                      .+|+|+|+|+|.+|..+|+.|...|+.|+|+|.+..++.
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~   39 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAK   39 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHH
Confidence            368999999999999999999999999999999988763

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=94.39  E-value=0.033  Score=54.25  Aligned_cols=38  Identities=29%  Similarity=0.468  Sum_probs=34.1

Q ss_pred             ccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      |+||++.|.|.+ .||+++|+.|...|++|+++++++..
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            789999999965 59999999999999999999988653

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.36  E-value=0.075  Score=48.57  Aligned_cols=100  Identities=17%  Similarity=0.066  Sum_probs=70.0

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccH---H------HHhhcCc---eecCHHHHhccCcEEEEcC
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINA---L------QASMEGY---EVTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~a---l------~a~~~G~---~v~~Leell~~aDiIi~at  411 (718)
                      +|.|++|++||-|+ |-...+..+..||+++.++-+.....   .      .....|.   ...+++++++.+|++.+..
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~   80 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT   80 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence            47899999999875 55666666778999999986543211   0      0112232   2457999999999998742


Q ss_pred             ----------------CCCCCcCHHHHhcCCCCeEEEEcCCCC-ccccHH
Q psy7896         412 ----------------GCKDIIRGEHFLQMRDDAIVCNIGHFD-CEIQVS  444 (718)
Q Consensus       412 ----------------gt~~lI~~e~l~~MK~gAiLIN~GRgd-~Eid~~  444 (718)
                                      .....++.+.++.+|+++++.-++--. .|++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP~~~~ei~~~  130 (170)
T d1otha2          81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDDE  130 (170)
T ss_dssp             SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCCCTTTBCHH
T ss_pred             eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCCccCcccchh
Confidence                            123458889999999999999998643 456544

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.28  E-value=0.022  Score=52.41  Aligned_cols=90  Identities=20%  Similarity=0.266  Sum_probs=64.7

Q ss_pred             ccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-------cCHHHHh-----ccCcEEEEcCC
Q psy7896         346 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-------TTMEEAA-----KEGGIFVTTTG  412 (718)
Q Consensus       346 L~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-------~~Leell-----~~aDiIi~atg  412 (718)
                      -.|++|.|.|. |.+|+.+++.++.+|++|+++..++.+.......|...       ...++++     +..|+++-+.|
T Consensus        28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG  107 (182)
T d1v3va2          28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG  107 (182)
T ss_dssp             CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC
T ss_pred             CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC
Confidence            36999999999 66999999999999999999987765433333344321       1123332     24788888876


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..  .-.+.++.|+++..++.+|..
T Consensus       108 ~~--~~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2         108 GE--FLNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             HH--HHHHHGGGEEEEEEEEECCCG
T ss_pred             ch--hhhhhhhhccCCCeEEeecce
Confidence            43  234678899999999999863

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.26  E-value=0.011  Score=53.54  Aligned_cols=64  Identities=22%  Similarity=0.147  Sum_probs=43.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHH-------Hhh-cCc--ee--cCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQ-------ASM-EGY--EV--TTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~-------a~~-~G~--~v--~~Leell~~aDiIi~atg  412 (718)
                      ++|+|||.|+||..+|-.+...|.  ++.++|.++.++..       +.. ...  .+  ..-.+.++++|+|+++.|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag   78 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAG   78 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEecc
Confidence            479999999999999998875554  79999988754211       110 111  11  112367888999888755

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=94.24  E-value=0.11  Score=46.95  Aligned_cols=103  Identities=12%  Similarity=0.122  Sum_probs=69.5

Q ss_pred             ccCcEEEEEec--ChhHHHHHHHHHhCCCEEEEEecCCcc---HH------HHhhcCc--e-ecCHHHHhccCcEEEEcC
Q psy7896         346 LAGKVAVVAGY--GDVGKGCAQSLRLFGSRVIVTEIDPIN---AL------QASMEGY--E-VTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       346 L~GktVGIIG~--G~IG~~vA~~l~~fGa~Viv~d~dp~~---al------~a~~~G~--~-v~~Leell~~aDiIi~at  411 (718)
                      |+|++|++||=  .++-...+..+..||+++.++-+....   ..      .+...+.  . ..+++++++.+|+|.+..
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~   80 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV   80 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence            57999999995  479999999999999999988543221   10      0112222  2 357999999999998741


Q ss_pred             -------CC---------CCCcCHHHH-hcCCCCeEEEEcCC--CCccccHHHHhc
Q psy7896         412 -------GC---------KDIIRGEHF-LQMRDDAIVCNIGH--FDCEIQVSWLDK  448 (718)
Q Consensus       412 -------gt---------~~lI~~e~l-~~MK~gAiLIN~GR--gd~Eid~~aL~~  448 (718)
                             +.         ...++.+.+ ..+|+++++.-++-  -+.|++-+.+..
T Consensus        81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~v~d~  136 (161)
T d1vlva2          81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYEVIEG  136 (161)
T ss_dssp             CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHHHHTS
T ss_pred             eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchhhhcC
Confidence                   00         112444444 46899999999875  245787665554

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=94.14  E-value=0.011  Score=55.93  Aligned_cols=36  Identities=31%  Similarity=0.173  Sum_probs=32.7

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ..+||+|||+|++|+.+|..|++.|++|+|+|.++.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            357999999999999999999999999999997654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.011  Score=55.41  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=32.1

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      -++|+|||.|..|+.+|+.|++.|++|+|+|..+.
T Consensus         5 ~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           5 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            46799999999999999999999999999997664

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.026  Score=52.87  Aligned_cols=39  Identities=21%  Similarity=0.179  Sum_probs=35.7

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ....+|+|.|||.|..|...|..|+..|.+|+++|.++.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCc
Confidence            345789999999999999999999999999999998774

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.06  E-value=0.018  Score=49.37  Aligned_cols=37  Identities=27%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ..++++|+|.|++|..+|..++++|+.||+++..+..
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~i   56 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERI   56 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccc
Confidence            3489999999999999999999999999999887654

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=94.04  E-value=0.014  Score=53.58  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=34.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  384 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~a  384 (718)
                      ++|+|.|+|.|..|++++..|+.+|+ +|.++++++.++
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka   54 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTG   54 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHH
Confidence            68999999999999999999999998 799998887654

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=94.03  E-value=0.014  Score=54.32  Aligned_cols=36  Identities=31%  Similarity=0.236  Sum_probs=32.6

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .-++|+|||+|.+|+.+|+.|+++|.+|+|+|.++.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~   40 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARDLP   40 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            447899999999999999999999999999997653

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.03  E-value=0.039  Score=50.07  Aligned_cols=47  Identities=21%  Similarity=0.374  Sum_probs=40.1

Q ss_pred             HHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         257 DGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       257 ~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .++.|+  .+..|.+|+|+|.|++|.-+++.++.+|. +|+++|.++.+.
T Consensus        17 ~a~~~~--~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl   64 (171)
T d1pl8a2          17 HACRRG--GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRL   64 (171)
T ss_dssp             HHHHHH--TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHH
T ss_pred             HHHHHh--CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHH
Confidence            455553  25679999999999999999999999999 799999988876

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=94.01  E-value=0.045  Score=50.53  Aligned_cols=56  Identities=23%  Similarity=0.325  Sum_probs=42.9

Q ss_pred             ccchh-hHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         249 YGCRE-SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       249 ~G~~e-s~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      +||+- +.+.++.+. ..+..|..|+|+|.|++|..+++.++..|. +|+++|.++.+.
T Consensus         9 l~Ca~~T~~~a~~~~-a~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~   66 (174)
T d1e3ia2           9 IGCGFSSGYGAAINT-AKVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKF   66 (174)
T ss_dssp             GGTHHHHHHHHHHTT-SCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             hhhHHHHHHHHHHHh-hCCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHH
Confidence            45642 223344442 346799999999999999999999999998 688888888875

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.00  E-value=0.03  Score=48.60  Aligned_cols=36  Identities=22%  Similarity=0.226  Sum_probs=33.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .++++.|||.|.||..+|..|+.+|.+|+++++.|.
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccceEEEEecccc
Confidence            358999999999999999999999999999987764

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.97  E-value=0.031  Score=49.40  Aligned_cols=37  Identities=30%  Similarity=0.271  Sum_probs=31.1

Q ss_pred             CCcEEEEEecCCCChhHHHHH----HhcCCeEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSL----RLFGSRVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aL----ra~Gv~VtV~D~dp~r  304 (718)
                      .+++++|+|.|.+|..+|..|    +..|+.|++++..+..
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            578999999999999998777    4679999998876653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.91  E-value=0.022  Score=51.60  Aligned_cols=65  Identities=17%  Similarity=0.175  Sum_probs=43.1

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCC--EEEEEecCCccH-HH--------Hhh-cCce--e----cCHHHHhccCcEEEE
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGS--RVIVTEIDPINA-LQ--------ASM-EGYE--V----TTMEEAAKEGGIFVT  409 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa--~Viv~d~dp~~a-l~--------a~~-~G~~--v----~~Leell~~aDiIi~  409 (718)
                      ++|+|||. |+||+.+|..+...|.  ++.++|+++... .+        +.. .+..  +    .+-.+.++.||+|+.
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi   80 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII   80 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence            47999995 9999999999988774  899999876321 11        000 1111  1    112357778898888


Q ss_pred             cCCC
Q psy7896         410 TTGC  413 (718)
Q Consensus       410 atgt  413 (718)
                      +.|.
T Consensus        81 tAG~   84 (145)
T d1hyea1          81 TSGV   84 (145)
T ss_dssp             CCSC
T ss_pred             eccc
Confidence            7664

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=93.90  E-value=0.011  Score=53.29  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=30.2

Q ss_pred             EEEEEecCCCChhHHHHHHhcCC-eEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~  303 (718)
                      +|+|||+|+.|+.+|..|+++|. .|+|+|..+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            69999999999999999999997 6999998764

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=93.85  E-value=0.036  Score=50.24  Aligned_cols=65  Identities=9%  Similarity=0.098  Sum_probs=43.0

Q ss_pred             cEEEEEecChhHHH-HHHHHHhC-CCEEEEEecCCccHHHHh-hcCc--eecCHHHHhc-cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLF-GSRVIVTEIDPINALQAS-MEGY--EVTTMEEAAK-EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~f-Ga~Viv~d~dp~~al~a~-~~G~--~v~~Leell~-~aDiIi~atgt  413 (718)
                      .+|||||+|.+|+. ....++.+ +.++.++|.+|....... ..+.  .+.+.+++++ +.|+|+.++.+
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~   72 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAAT   72 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCG
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceecccccc
Confidence            47999999999976 56677666 557788888876543321 2232  2346677765 45777777654

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.83  E-value=0.45  Score=47.66  Aligned_cols=167  Identities=17%  Similarity=0.149  Sum_probs=103.4

Q ss_pred             hhhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhc-CCeEEEe-ecCchhhhhhhhhhhhhhHHHHHHHHHHhcc
Q psy7896         252 RESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLF-GSRVIVT-EIDPINALQASMEGYELDEEVAALHLEHLGV  329 (718)
Q Consensus       252 ~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~-Gv~VtV~-D~dp~r~v~AvaeGf~L~r~i~~~~l~~lgv  329 (718)
                      +||+-|...--..   -. -++++....-+. ....++.. .++|++. +.+...-.|+.++-|.+.+            
T Consensus        85 gEsi~Dt~~vls~---~~-d~iv~R~~~~~~-~~~~~~~~~~vPVINAg~~~~~HP~Q~LaD~~Ti~e------------  147 (310)
T d1tuga1          85 GETLADTISVIST---YV-DAIVMRHPQEGA-ARLATEFSGNVPVLNAGDGSNQHPTQTLLDLFTIQE------------  147 (310)
T ss_dssp             SCCHHHHHHHHTT---TC-SEEEEEESSBTH-HHHHTTTCTTSCEEEEEETTSCCHHHHHHHHHHHHH------------
T ss_pred             CccHHHhhhHhhh---cc-hheeeechhhhh-hHHHHHhccCccEEECCCCcccchHHHHHHHHHHHH------------
Confidence            5887776543211   12 233444433222 22223333 4789985 5555555677777665532            


Q ss_pred             cccccchhhhhhhcccccCcEEEEEec---ChhHHHHHHHHHhCC-CEEEEEecCCccH----HH-HhhcCc--e-ecCH
Q psy7896         330 KLTKLTEDQAKYLDIMLAGKVAVVAGY---GDVGKGCAQSLRLFG-SRVIVTEIDPINA----LQ-ASMEGY--E-VTTM  397 (718)
Q Consensus       330 ~~~~~~~~~~~~~g~eL~GktVGIIG~---G~IG~~vA~~l~~fG-a~Viv~d~dp~~a----l~-a~~~G~--~-v~~L  397 (718)
                                 ..| .+.|++|.++|-   +++....+..+..|| +++.++.+.....    .+ +...|.  . ..++
T Consensus       148 -----------~~g-~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~  215 (310)
T d1tuga1         148 -----------TQG-RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSI  215 (310)
T ss_dssp             -----------HHS-CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCG
T ss_pred             -----------HcC-CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeech
Confidence                       123 489999999997   788889898888895 6888875433211    11 122232  2 3578


Q ss_pred             HHHhccCcEEEEcC--------------CCCCCcCHHHHhcCCCCeEEEEcCCCCccccHHHHh
Q psy7896         398 EEAAKEGGIFVTTT--------------GCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSWLD  447 (718)
Q Consensus       398 eell~~aDiIi~at--------------gt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~aL~  447 (718)
                      +++++.+|+|.+..              .....++.+.++.+|+++++.-+.--+.||+.+-+.
T Consensus       216 ~~a~~~aDvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLPRg~EIt~eV~d  279 (310)
T d1tuga1         216 EEVMAEVDILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDVDK  279 (310)
T ss_dssp             GGTTTTCSEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSCCSSSBCGGGGG
T ss_pred             hhhccCCceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCCCCCEecHhhhc
Confidence            99999999998641              112458889999999999998776544577655433

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=93.83  E-value=0.035  Score=48.38  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+|++.|||.|.||..+|..++.+|.+|+++++.+.
T Consensus        29 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          29 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPR   64 (121)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred             cCCeEEEECcchhHHHHHHHhhcccceEEEEeeccc
Confidence            469999999999999999999999999999987764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.75  E-value=0.026  Score=49.60  Aligned_cols=35  Identities=23%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..+++.|||.|-||..+|..++.+|.+|++++..+
T Consensus        25 ~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~   59 (125)
T d1ojta2          25 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD   59 (125)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             cCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeec
Confidence            46899999999999999999999999999998765

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.75  E-value=0.023  Score=49.51  Aligned_cols=37  Identities=30%  Similarity=0.267  Sum_probs=33.6

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ..++++|||.|.+|...|+.++++|.+||+.+..+..
T Consensus        24 ~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          24 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             cCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            4589999999999999999999999999999877664

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=93.75  E-value=0.026  Score=48.40  Aligned_cols=36  Identities=28%  Similarity=0.300  Sum_probs=32.6

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+++.|||.|.+|..+|..++.+|++|+++++.+.
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARER   55 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeeecc
Confidence            358999999999999999999999999999987653

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.69  E-value=0.065  Score=48.95  Aligned_cols=64  Identities=17%  Similarity=0.097  Sum_probs=43.2

Q ss_pred             cEEEEEecChhHHHHHHH--HHhC----CCEEEEEecCCccHHHHh-------hcCce---ecCHHHHhccCcEEEEcCC
Q psy7896         349 KVAVVAGYGDVGKGCAQS--LRLF----GSRVIVTEIDPINALQAS-------MEGYE---VTTMEEAAKEGGIFVTTTG  412 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~--l~~f----Ga~Viv~d~dp~~al~a~-------~~G~~---v~~Leell~~aDiIi~atg  412 (718)
                      .+|.|||.|.+|...+-.  ++..    +.++.++|+++.+.....       .....   ..+.++.++.||+|+.+.+
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~   80 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR   80 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence            479999999998766532  3322    358999999887543211       11222   2467899999999998754

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.68  E-value=0.042  Score=49.23  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=39.7

Q ss_pred             HHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         256 VDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       256 ~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      +.++.++  ....|++++|.|.|++|..+++.++..|.+|++++.++.+.
T Consensus        17 ~~al~~~--~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~   64 (168)
T d1rjwa2          17 YKALKVT--GAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKL   64 (168)
T ss_dssp             HHHHHHH--TCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             HHHHHHh--CCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHh
Confidence            3444443  25679999999999999999999999999999998888765

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.58  E-value=0.034  Score=48.46  Aligned_cols=34  Identities=21%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      |+++|+|.|.+|..+|..++.+|..||+++..+.
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~   56 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDK   56 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccc
Confidence            7999999999999999999999999999988664

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=93.58  E-value=0.05  Score=49.76  Aligned_cols=88  Identities=15%  Similarity=0.166  Sum_probs=57.3

Q ss_pred             cEEEEEecChhHHH-HHHHHHhCCC-EEE-EEecCCccH--HHHhhcCceec--CHHHHh-----ccCcEEEEcCCCC-C
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLFGS-RVI-VTEIDPINA--LQASMEGYEVT--TMEEAA-----KEGGIFVTTTGCK-D  415 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~fGa-~Vi-v~d~dp~~a--l~a~~~G~~v~--~Leell-----~~aDiIi~atgt~-~  415 (718)
                      -+|||||.|.||+. +.+.++.+.- ++. ++++++...  ..+...|..+.  ..++++     .+.|+++.+|.+. |
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h   84 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAH   84 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhH
Confidence            58999999999986 5678876644 544 467776532  22344565432  355554     3578999887642 3


Q ss_pred             CcCHHHHhcCCCCeEEEEcCC
Q psy7896         416 IIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       416 lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      .=.+..+...+.|+++|+-+.
T Consensus        85 ~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          85 VQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             HHHHHHHHHHCTTCEEEECST
T ss_pred             HHhHHHHHHHHcCCEEEEccc
Confidence            333344667899998887765

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=93.53  E-value=0.047  Score=50.37  Aligned_cols=56  Identities=23%  Similarity=0.332  Sum_probs=43.9

Q ss_pred             ccchhh-HHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         249 YGCRES-LVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       249 ~G~~es-~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .+|+-. .+.++.+..+ +..|..|+|+|.|++|...++.++.+|. +|+++|.++.+.
T Consensus        10 l~Ca~~T~~~Av~~~~~-~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          10 IGCGFSTGYGAAVKTGK-VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKF   67 (176)
T ss_dssp             GGTHHHHHHHHHHTTSC-CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             hhhHHHHHHHHHHHhhC-CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHH
Confidence            345422 3445544333 6789999999999999999999999996 899999999876

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=93.50  E-value=0.06  Score=48.60  Aligned_cols=65  Identities=20%  Similarity=0.268  Sum_probs=42.3

Q ss_pred             cEEEEEe-cChhHHHHHHHHH---hCCCEEEEEecCCccHHHHh--hcC---ce---e--cCHHHHhccCcEEEEcCCC
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLR---LFGSRVIVTEIDPINALQAS--MEG---YE---V--TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~---~fGa~Viv~d~dp~~al~a~--~~G---~~---v--~~Leell~~aDiIi~atgt  413 (718)
                      ++|+||| .|+||+.+|-.+.   +++-++.++|.++...-++.  .+.   ..   +  .+-.+.++.||+|+.+.|.
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~   79 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV   79 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence            4799999 5999999998763   45679999998774322211  111   00   0  1234567888988887653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.41  E-value=0.025  Score=49.51  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=34.3

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ  307 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~  307 (718)
                      +|+|+|+|.+|..+++.|...|..|+++|.+|.+...
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~   38 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKK   38 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhh
Confidence            7899999999999999999999999999999987644

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.28  E-value=0.059  Score=50.07  Aligned_cols=93  Identities=18%  Similarity=0.118  Sum_probs=65.2

Q ss_pred             cccccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceec----C-HHHHh-----ccCcEEEEcC
Q psy7896         343 DIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVT----T-MEEAA-----KEGGIFVTTT  411 (718)
Q Consensus       343 g~eL~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~----~-Leell-----~~aDiIi~at  411 (718)
                      +..-.|++|.|.| .|.+|....+.++.+|++|+.+..++.+...+...|...+    + .++..     +..|+|+-+.
T Consensus        27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~~vi~~~~~~~~~~~~~~~~gvD~vid~v  106 (176)
T d1xa0a2          27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAKEVLAREDVMAERIRPLDKQRWAAAVDPV  106 (176)
T ss_dssp             TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCSEEEECC---------CCSCCEEEEEECS
T ss_pred             CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence            4556799999999 5999999999999999999998877766444444443321    1 12222     2467777766


Q ss_pred             CCCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         412 GCKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       412 gt~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      +..  .-.+.+..|+++..++.+|-.
T Consensus       107 gg~--~~~~~l~~l~~~Griv~~G~~  130 (176)
T d1xa0a2         107 GGR--TLATVLSRMRYGGAVAVSGLT  130 (176)
T ss_dssp             TTT--THHHHHHTEEEEEEEEECSCC
T ss_pred             Cch--hHHHHHHHhCCCceEEEeecc
Confidence            643  245678999999999999863

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.23  E-value=0.11  Score=47.17  Aligned_cols=100  Identities=17%  Similarity=0.133  Sum_probs=69.4

Q ss_pred             ccCcEEEEEec---ChhHHHHHHHHHhCCCE-EEEEecCCcc-----HHHHhhcCce---ecCHHHHhccCcEEEEcCC-
Q psy7896         346 LAGKVAVVAGY---GDVGKGCAQSLRLFGSR-VIVTEIDPIN-----ALQASMEGYE---VTTMEEAAKEGGIFVTTTG-  412 (718)
Q Consensus       346 L~GktVGIIG~---G~IG~~vA~~l~~fGa~-Viv~d~dp~~-----al~a~~~G~~---v~~Leell~~aDiIi~atg-  412 (718)
                      |.|.+|++||=   |++...++..+..||.. ++++-+....     ...+...|..   ..+++++++++|+|.+... 
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~   81 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ   81 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence            67999999997   66999999999999764 5555322111     1111223332   3578899999999987411 


Q ss_pred             -------------CCCCcCHHHHhcCCCCeEEEEcCCCCccccHHH
Q psy7896         413 -------------CKDIIRGEHFLQMRDDAIVCNIGHFDCEIQVSW  445 (718)
Q Consensus       413 -------------t~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~~a  445 (718)
                                   ....++.+.++.+++++++.-+..-+.||+.+-
T Consensus        82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcLPRg~EI~~~V  127 (160)
T d1ekxa2          82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATDV  127 (160)
T ss_dssp             GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCSCCSSSBCGGG
T ss_pred             ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCCCcCCccchhh
Confidence                         234578888999999999999886445776543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=93.21  E-value=0.048  Score=48.07  Aligned_cols=36  Identities=22%  Similarity=0.165  Sum_probs=33.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+++|.|||.|.||..+|..++..|.+|++++..+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeeccc
Confidence            579999999999999999999999999999987664

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.20  E-value=3.8  Score=39.19  Aligned_cols=40  Identities=28%  Similarity=0.330  Sum_probs=35.1

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .+|+||++.|.|.+. ||+++|+.|...|++|++.++++..
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~   43 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKED   43 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHH
Confidence            469999999999754 9999999999999999999877643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=93.19  E-value=0.042  Score=51.01  Aligned_cols=34  Identities=32%  Similarity=0.264  Sum_probs=31.8

Q ss_pred             CcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         348 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      -|+|.|||.|..|..+|..|+..|.+|+++|+++
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            4689999999999999999999999999999765

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.17  E-value=0.024  Score=49.23  Aligned_cols=37  Identities=22%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      .+++++|+|.|++|..+|..|+.+|+.|++++..+..
T Consensus        31 ~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          31 NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMF   67 (122)
T ss_dssp             HHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCC
T ss_pred             cCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccc
Confidence            4689999999999999999999999999999987653

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=93.15  E-value=0.016  Score=54.04  Aligned_cols=34  Identities=26%  Similarity=0.261  Sum_probs=31.2

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      +|+|||.|+.|+.+|..|.++|++|+|+|..+..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            5899999999999999999999999999987653

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=93.01  E-value=0.024  Score=53.95  Aligned_cols=38  Identities=29%  Similarity=0.385  Sum_probs=34.2

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+.|+++.|+|+|.+|+.+|+.|+.+|++|.++|....
T Consensus        40 el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1          40 EVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRN   77 (197)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccCCeEEEecccccchhHHHhHhhhcccccccCcccc
Confidence            46899999999999999999999999999999985543

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=92.88  E-value=0.039  Score=52.52  Aligned_cols=36  Identities=31%  Similarity=0.271  Sum_probs=33.0

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..|+|.|||.|..|...|..|+..|.+|+++|..+.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~   64 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASER   64 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            568999999999999999999999999999997653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.83  E-value=0.057  Score=51.69  Aligned_cols=40  Identities=23%  Similarity=0.314  Sum_probs=36.1

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ++|+||++.|.|.+. ||+++|+.|...|++|++.+++...
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHH
Confidence            368999999999987 9999999999999999999887654

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=92.80  E-value=0.034  Score=52.06  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=34.5

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      +.|+++.|+|+|.+|+.++..++.+|.+|.++|..+.
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~   76 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPK   76 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             ccCceEEEeccccccccceeeeecccccccccccccc
Confidence            6799999999999999999999999999999987665

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.79  E-value=0.038  Score=51.24  Aligned_cols=88  Identities=20%  Similarity=0.274  Sum_probs=59.3

Q ss_pred             CcEEEEEe-cChhHHHHHHHHHhCCCEEE-EEecCCccHHHH-hhcCcee------cCHHHHhcc-----CcEEEEcCCC
Q psy7896         348 GKVAVVAG-YGDVGKGCAQSLRLFGSRVI-VTEIDPINALQA-SMEGYEV------TTMEEAAKE-----GGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG-~G~IG~~vA~~l~~fGa~Vi-v~d~dp~~al~a-~~~G~~v------~~Leell~~-----aDiIi~atgt  413 (718)
                      +++|.|.| .|.||+.+++.++.+|++++ ++...+.+.... ...|...      .++.+.+++     .|+|+-+.|.
T Consensus        31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vGg  110 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVGG  110 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSCH
T ss_pred             CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCCc
Confidence            48999999 59999999999999999644 444443332222 2234322      245555544     8999988875


Q ss_pred             CCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         414 KDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       414 ~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      . . -...++.++++..++.+|..
T Consensus       111 ~-~-~~~~~~~l~~~G~iv~~G~~  132 (187)
T d1vj1a2         111 D-I-SNTVISQMNENSHIILCGQI  132 (187)
T ss_dssp             H-H-HHHHHTTEEEEEEEEEC---
T ss_pred             h-h-HHHHhhhccccccEEEeccc
Confidence            3 2 34678999999999999863

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.094  Score=48.09  Aligned_cols=65  Identities=17%  Similarity=0.073  Sum_probs=44.6

Q ss_pred             cEEEEEecChhHHH-HHHHHHhCC--CEEE-EEecCCccHHHH-hhcCc--eecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKG-CAQSLRLFG--SRVI-VTEIDPINALQA-SMEGY--EVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~-vA~~l~~fG--a~Vi-v~d~dp~~al~a-~~~G~--~v~~Leell~--~aDiIi~atgt  413 (718)
                      .+|||||+|.+|+. .+..++.++  .++. ++|+++.++... ...+.  .+.+++|+++  +.|+|+++|.+
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~   77 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV   77 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence            47999999999987 477777765  3555 678877654322 12232  3568999986  46888887765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.73  E-value=0.072  Score=48.16  Aligned_cols=49  Identities=18%  Similarity=0.191  Sum_probs=40.4

Q ss_pred             HHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         255 LVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       255 ~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .+.++.++  ....|++|+|+|.|++|.-.++.++.+|++|++++..+.+.
T Consensus        19 ay~al~~~--~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~   67 (168)
T d1uufa2          19 TYSPLRHW--QAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKR   67 (168)
T ss_dssp             HHHHHHHT--TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred             HHHHHHHh--CCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHH
Confidence            45566542  35689999999999999999999999999998888777754

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.72  E-value=0.027  Score=48.78  Aligned_cols=35  Identities=11%  Similarity=0.111  Sum_probs=32.3

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .++++|+|.|.+|..+|..|+.+|++|++++..+.
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~   56 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNR   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSS
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehhcc
Confidence            58999999999999999999999999999987654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=92.70  E-value=0.053  Score=52.10  Aligned_cols=40  Identities=25%  Similarity=0.411  Sum_probs=34.7

Q ss_pred             cccCcEEEEEec-Ch--hHHHHHHHHHhCCCEEEEEecCCccH
Q psy7896         345 MLAGKVAVVAGY-GD--VGKGCAQSLRLFGSRVIVTEIDPINA  384 (718)
Q Consensus       345 eL~GktVGIIG~-G~--IG~~vA~~l~~fGa~Viv~d~dp~~a  384 (718)
                      -|+||++.|.|. |.  ||+++|+.|...|++|++++++..+.
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~   45 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL   45 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHH
Confidence            378999999995 54  99999999999999999998876543

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=92.65  E-value=0.054  Score=49.83  Aligned_cols=92  Identities=17%  Similarity=0.079  Sum_probs=63.7

Q ss_pred             ccccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHh---------ccCcEEEEcCC
Q psy7896         344 IMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAA---------KEGGIFVTTTG  412 (718)
Q Consensus       344 ~eL~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell---------~~aDiIi~atg  412 (718)
                      ....|.+|.|-| .|.+|....+.++.+|++|+.+..++.+.......|... .+-++..         +..|+++-+.+
T Consensus        20 ~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad~vi~~~~~~~~~~~~~~~~gvd~vid~vg   99 (167)
T d1tt7a2          20 LSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGASEVISREDVYDGTLKALSKQQWQGAVDPVG   99 (167)
T ss_dssp             CCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCSEEEEHHHHCSSCCCSSCCCCEEEEEESCC
T ss_pred             CCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhcccceEeccchhchhhhcccCCCceEEEecCc
Confidence            344677899999 599999999999999999999887766544443444432 2233221         23566666655


Q ss_pred             CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         413 CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       413 t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      ..  .-.+.++.++++..++.+|..
T Consensus       100 g~--~~~~~~~~l~~~G~iv~~G~~  122 (167)
T d1tt7a2         100 GK--QLASLLSKIQYGGSVAVSGLT  122 (167)
T ss_dssp             TH--HHHHHHTTEEEEEEEEECCCS
T ss_pred             HH--HHHHHHHHhccCceEEEeecc
Confidence            43  224678889999999988864

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.58  E-value=0.096  Score=48.79  Aligned_cols=92  Identities=15%  Similarity=0.017  Sum_probs=63.4

Q ss_pred             cccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---HH-H-----HhhcCc--e-ecCHHHHhccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---AL-Q-----ASMEGY--E-VTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---al-~-----a~~~G~--~-v~~Leell~~aDiIi~a  410 (718)
                      .|.|.+|++||=|  ++...++..+..||+++.++-+....   .. +     +...|.  . ..+++++++.+|+|.+.
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~   81 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD   81 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence            5789999999965  89999999999999999998543221   11 0     111232  2 35799999999999874


Q ss_pred             C----C-------------CCCCcCHHH-HhcCCCCeEEEEcCC
Q psy7896         411 T----G-------------CKDIIRGEH-FLQMRDDAIVCNIGH  436 (718)
Q Consensus       411 t----g-------------t~~lI~~e~-l~~MK~gAiLIN~GR  436 (718)
                      .    +             ....++.+. ...+|+++++.-+.-
T Consensus        82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~LP  125 (185)
T d1dxha2          82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCLP  125 (185)
T ss_dssp             CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECSC
T ss_pred             hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCCc
Confidence            1    1             012344444 456789999988874

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.04  Score=53.89  Aligned_cols=45  Identities=29%  Similarity=0.442  Sum_probs=38.6

Q ss_pred             hhhhcccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         339 AKYLDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       339 ~~~~g~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ..|....|+||++.|.|.+. ||+++|+.|...|++|++++++..+
T Consensus         5 ~~f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_           5 EEFRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET   50 (269)
T ss_dssp             SCCCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccCCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            34445569999999999987 9999999999999999999987643

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.50  E-value=0.24  Score=45.58  Aligned_cols=65  Identities=17%  Similarity=0.055  Sum_probs=43.2

Q ss_pred             CcEEEEEecChhHHH--HHHHHHhC----CCEEEEEecCCccHH---HH-----hhcC--c---eecCHHHHhccCcEEE
Q psy7896         348 GKVAVVAGYGDVGKG--CAQSLRLF----GSRVIVTEIDPINAL---QA-----SMEG--Y---EVTTMEEAAKEGGIFV  408 (718)
Q Consensus       348 GktVGIIG~G~IG~~--vA~~l~~f----Ga~Viv~d~dp~~al---~a-----~~~G--~---~v~~Leell~~aDiIi  408 (718)
                      .-+|.|||.|.+|..  +...++..    +.++.++|+|+.+..   +.     ...+  .   ...+..|+++.||||+
T Consensus         3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv   82 (167)
T d1u8xx1           3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM   82 (167)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred             CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence            457999999999865  33444322    248999999986532   11     0112  1   2347889999999999


Q ss_pred             EcCC
Q psy7896         409 TTTG  412 (718)
Q Consensus       409 ~atg  412 (718)
                      .+.+
T Consensus        83 itag   86 (167)
T d1u8xx1          83 AHIR   86 (167)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9855

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=92.49  E-value=0.031  Score=53.02  Aligned_cols=38  Identities=26%  Similarity=0.456  Sum_probs=34.6

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+.|+++.|+|+|.+|+.+|+.|+.+|++|.++|..+.
T Consensus        42 ~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   79 (199)
T d1dxya1          42 ELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPM   79 (199)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccceeeeeeecccccccccccccccceeeeccCCccc
Confidence            46899999999999999999999999999999986554

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.47  E-value=0.098  Score=47.92  Aligned_cols=56  Identities=20%  Similarity=0.236  Sum_probs=43.3

Q ss_pred             ccchhh-HHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         249 YGCRES-LVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       249 ~G~~es-~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .||+-. .+.++.+. .....|.+|+|+|.|++|...++.++.+|. +|+++|.++.+.
T Consensus         8 lgCa~~Ta~~a~~~~-a~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl   65 (174)
T d1p0fa2           8 IGCGFATGYGAAVNT-AKVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKF   65 (174)
T ss_dssp             GGTHHHHHHHHHHTT-TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred             hhhHHHHHHHHHHHh-hCCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHH
Confidence            466522 33444432 236789999999999999999999999997 788888888875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.46  E-value=0.026  Score=49.19  Aligned_cols=34  Identities=26%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  302 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp  302 (718)
                      -++++|||.|++|..+|..++++|..|++++.++
T Consensus        20 P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~   53 (122)
T d1h6va2          20 PGKTLVVGASYVALECAGFLAGIGLDVTVMVRSI   53 (122)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CCeEEEECCCccHHHHHHHHhhcCCeEEEEEech
Confidence            4789999999999999999999999999997653

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=92.42  E-value=0.072  Score=49.95  Aligned_cols=41  Identities=39%  Similarity=0.569  Sum_probs=36.9

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhhh
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINAL  306 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~v  306 (718)
                      +..|..|+|+|.|++|..+++.++.+|. +|+++|.++.+..
T Consensus        23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~   64 (195)
T d1kola2          23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLA   64 (195)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhH
Confidence            5689999999999999999999999998 8889999888763

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=92.38  E-value=0.057  Score=51.57  Aligned_cols=66  Identities=12%  Similarity=0.035  Sum_probs=44.5

Q ss_pred             CcEEEEEecChhHHH-HHHHHHhC-CCEEE-EEecCCccHHHHh-hcCc------eecCHHHHhc--cCcEEEEcCCC
Q psy7896         348 GKVAVVAGYGDVGKG-CAQSLRLF-GSRVI-VTEIDPINALQAS-MEGY------EVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       348 GktVGIIG~G~IG~~-vA~~l~~f-Ga~Vi-v~d~dp~~al~a~-~~G~------~v~~Leell~--~aDiIi~atgt  413 (718)
                      --+|||||+|.+|+. ++..++.. +++|+ ++|+++.++.... ..|.      .+.++++++.  +.|+|+++|.+
T Consensus        33 ~iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~  110 (221)
T d1h6da1          33 RFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN  110 (221)
T ss_dssp             CEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred             CEEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccch
Confidence            458999999999974 56666655 67766 6888876643322 2232      2457888886  46777777655

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=92.18  E-value=0.061  Score=52.30  Aligned_cols=41  Identities=22%  Similarity=0.314  Sum_probs=36.9

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCccH
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINA  384 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~a  384 (718)
                      .+|+||++.|.|.+. ||+++|+.|...|++|+++++++...
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~~   46 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA   46 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            468999999999987 99999999999999999999887543

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.08  E-value=0.033  Score=52.30  Aligned_cols=35  Identities=26%  Similarity=0.177  Sum_probs=30.5

Q ss_pred             cEEEEEecCCCChhHHHHHHhc--CCeEEEeecCchh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDPIN  304 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~--Gv~VtV~D~dp~r  304 (718)
                      .+|+|||.|+.|+++|..|++.  |+.|+++|..+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4899999999999999988765  7899999987753

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.03  E-value=0.064  Score=52.13  Aligned_cols=40  Identities=35%  Similarity=0.437  Sum_probs=35.9

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ++|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         1 f~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           1 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            368999999999976 9999999999999999999987654

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=92.01  E-value=0.075  Score=50.33  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             ccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         344 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       344 ~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..-.+|+|.|||.|..|...|..|+..|.+|+++|..+.
T Consensus        45 ~~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          45 QTKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEK   83 (233)
T ss_dssp             CCSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             cccCCceEEEEcccHHHHHHHHHHHHhccceeeEeeccc
Confidence            345789999999999999999999999999999987653

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.98  E-value=0.043  Score=50.53  Aligned_cols=49  Identities=31%  Similarity=0.346  Sum_probs=40.3

Q ss_pred             HHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhhhh
Q psy7896         257 DGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQ  307 (718)
Q Consensus       257 ~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~v~  307 (718)
                      .++.++  ....|.+|+|+|.|++|..+++.++.+|. +|+++|.++.+...
T Consensus        18 ~a~~~a--~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~   67 (174)
T d1jqba2          18 HGAELA--DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEA   67 (174)
T ss_dssp             HHHHHT--TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHH
T ss_pred             HHHHHh--CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHH
Confidence            344443  35689999999999999999999999998 79999998887633

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=91.91  E-value=0.079  Score=49.76  Aligned_cols=35  Identities=31%  Similarity=0.196  Sum_probs=32.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..++|.|||.|..|..+|..|+..|.+|+++|+.+
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            35789999999999999999999999999999765

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.89  E-value=0.073  Score=51.43  Aligned_cols=39  Identities=23%  Similarity=0.449  Sum_probs=34.9

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      +|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            58999999999875 9999999999999999999887543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=91.87  E-value=0.043  Score=51.84  Aligned_cols=40  Identities=23%  Similarity=0.351  Sum_probs=35.7

Q ss_pred             cccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         265 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       265 ~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ..+.|+++.|+|+|.+|+.+|+.|+.+|++|..+|.....
T Consensus        45 ~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~   84 (193)
T d1mx3a1          45 ARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSD   84 (193)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCT
T ss_pred             eeeeCceEEEeccccccccceeeeeccccceeeccCcccc
Confidence            4579999999999999999999999999999998865443

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=91.84  E-value=0.071  Score=48.66  Aligned_cols=51  Identities=22%  Similarity=0.314  Sum_probs=42.7

Q ss_pred             hHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       254 s~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .++..+.+ .+....||+++|+|+|.++++++++|...|++|+++..++.++
T Consensus         4 Gf~~~l~~-~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka   54 (170)
T d1nyta1           4 GLLSDLER-LSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRA   54 (170)
T ss_dssp             HHHHHHHH-HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHH
T ss_pred             HHHHHHHH-cCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHH
Confidence            35556654 3667899999999999999999999999999999988777654

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=91.84  E-value=0.11  Score=48.04  Aligned_cols=89  Identities=21%  Similarity=0.184  Sum_probs=58.9

Q ss_pred             ccCcEEEEE--ecChhHHHHHHHHHhCCCEEEEEecCCccHH----HHhhcCce-ecC------------HHHHh----c
Q psy7896         346 LAGKVAVVA--GYGDVGKGCAQSLRLFGSRVIVTEIDPINAL----QASMEGYE-VTT------------MEEAA----K  402 (718)
Q Consensus       346 L~GktVGII--G~G~IG~~vA~~l~~fGa~Viv~d~dp~~al----~a~~~G~~-v~~------------Leell----~  402 (718)
                      -.|++|.|+  |.|.+|+.+.+.++.+|++|+++-..+....    .....|.. +.+            ..++.    +
T Consensus        27 ~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~  106 (189)
T d1gu7a2          27 TPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGG  106 (189)
T ss_dssp             CTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccC
Confidence            358899998  6799999999999999999988643332211    11123432 111            11221    2


Q ss_pred             cCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCC
Q psy7896         403 EGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       403 ~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GR  436 (718)
                      ..|+++-+.+...  ....++.|+++..++.+|.
T Consensus       107 ~vdvv~D~vg~~~--~~~~~~~l~~~G~~v~~G~  138 (189)
T d1gu7a2         107 EAKLALNCVGGKS--STGIARKLNNNGLMLTYGG  138 (189)
T ss_dssp             CEEEEEESSCHHH--HHHHHHTSCTTCEEEECCC
T ss_pred             CceEEEECCCcch--hhhhhhhhcCCcEEEEECC
Confidence            3688887766432  2567899999999999985

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=91.79  E-value=0.079  Score=51.71  Aligned_cols=39  Identities=23%  Similarity=0.405  Sum_probs=35.5

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      +|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            58999999999986 9999999999999999999987643

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.78  E-value=0.53  Score=45.29  Aligned_cols=101  Identities=19%  Similarity=0.243  Sum_probs=75.8

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc----------cHH---HHhh--cCceecCHHHHhccCc
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI----------NAL---QASM--EGYEVTTMEEAAKEGG  405 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~----------~al---~a~~--~G~~v~~Leell~~aD  405 (718)
                      .+..|...++.|+|.|.-|..+|+.+...|. ++..+|++-.          ...   .+..  ......++.++++.++
T Consensus        20 ~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~   99 (222)
T d1vl6a1          20 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD   99 (222)
T ss_dssp             HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred             hCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCcccccccHHHHHHHhhhcchhhhcchHhhccCcc
Confidence            4678999999999999999999999988888 6778876421          000   0111  1112357889999999


Q ss_pred             EEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccH
Q psy7896         406 IFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQV  443 (718)
Q Consensus       406 iIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~  443 (718)
                      +++... +.++++++.+..|.+..++.-.+.-..++..
T Consensus       100 ~~~g~~-~~~~~~~e~m~~~~~rPIIFpLSNPt~~~e~  136 (222)
T d1vl6a1         100 FFIGVS-RGNILKPEWIKKMSRKPVIFALANPVPEIDP  136 (222)
T ss_dssp             EEEECS-CSSCSCHHHHTTSCSSCEEEECCSSSCSSCH
T ss_pred             eecccc-ccccccHHHHhhcCCCCEEEecCCCccchhh
Confidence            877654 5789999999999999999988886555553

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.72  E-value=0.11  Score=49.75  Aligned_cols=37  Identities=19%  Similarity=0.257  Sum_probs=33.6

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |+||++.|.|.+. ||+++|+.|...|++|+++++++.
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            7899999999865 999999999999999999988753

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=91.64  E-value=0.0012  Score=58.68  Aligned_cols=23  Identities=13%  Similarity=0.177  Sum_probs=20.5

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG  371 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG  371 (718)
                      |+++|+|+|+||+.+|+++++||
T Consensus        99 r~l~i~G~G~iG~~iA~r~~a~G  121 (121)
T d1qp8a2          99 RNLITYATGGRPRNIAKREDYIG  121 (121)
T ss_dssp             HHHHHHHTTSCCSCBCCGGGTC-
T ss_pred             CCEEEEcCCHHHHHHHHHHHhcC
Confidence            36799999999999999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=91.61  E-value=0.042  Score=48.17  Aligned_cols=38  Identities=21%  Similarity=0.150  Sum_probs=34.0

Q ss_pred             cCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         267 LAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ...++++|+|.|.+|..+|..++++|.+|++++..+..
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~i   61 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGL   61 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccc
Confidence            34589999999999999999999999999999887653

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=91.61  E-value=0.041  Score=55.20  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=33.9

Q ss_pred             CcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .|+|+|||+|..|+.+|+.|.+.|..|+|+|..+...
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCc
Confidence            4899999999999999999999999999999887653

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=91.59  E-value=0.063  Score=48.36  Aligned_cols=32  Identities=25%  Similarity=0.374  Sum_probs=26.8

Q ss_pred             EEEEEe-cChhHHHHHHHHHhCCC--EEEEEecCC
Q psy7896         350 VAVVAG-YGDVGKGCAQSLRLFGS--RVIVTEIDP  381 (718)
Q Consensus       350 tVGIIG-~G~IG~~vA~~l~~fGa--~Viv~d~dp  381 (718)
                      +|+||| .|+||+.+|-.+...|.  ++.++|++.
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~   36 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPD   36 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGG
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCC
Confidence            799999 69999999998876555  788998654

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=91.56  E-value=0.058  Score=52.63  Aligned_cols=40  Identities=35%  Similarity=0.441  Sum_probs=35.3

Q ss_pred             cccccCcEEEEEecC---hhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         343 DIMLAGKVAVVAGYG---DVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       343 g~eL~GktVGIIG~G---~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+|+||++.|.|.+   -||+++|+.|...|++|++.++.+.
T Consensus         3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~   45 (297)
T d1d7oa_           3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPA   45 (297)
T ss_dssp             CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHH
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchh
Confidence            467999999999986   5999999999999999999876543

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.53  E-value=0.029  Score=52.31  Aligned_cols=35  Identities=23%  Similarity=0.096  Sum_probs=31.2

Q ss_pred             cEEEEEecCCCChhHHHHHHhcC-------CeEEEeecCchh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFG-------SRVIVTEIDPIN  304 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~G-------v~VtV~D~dp~r  304 (718)
                      .+|+|||.|+.|+++|+.|.++|       +.|+|+|..+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            48999999999999999999998       479999987753

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=91.53  E-value=0.1  Score=50.21  Aligned_cols=40  Identities=28%  Similarity=0.332  Sum_probs=34.7

Q ss_pred             cccccCcEEEEEecC---hhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         343 DIMLAGKVAVVAGYG---DVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       343 g~eL~GktVGIIG~G---~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..+|+||++.|.|.+   .||+++|+.|...|++|++.+++..
T Consensus         3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAER   45 (256)
T ss_dssp             EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGG
T ss_pred             CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHH
Confidence            357899999999974   4999999999999999999887643

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.52  E-value=0.12  Score=46.93  Aligned_cols=49  Identities=18%  Similarity=0.222  Sum_probs=38.1

Q ss_pred             HHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCe-EEEeecCchhh
Q psy7896         256 VDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDPINA  305 (718)
Q Consensus       256 ~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~-VtV~D~dp~r~  305 (718)
                      +.++.+..+ +..|.+|+|+|.|++|..+++.++.+|.. |++++.++.+.
T Consensus        17 ~~a~~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~   66 (174)
T d1f8fa2          17 AGACINALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRL   66 (174)
T ss_dssp             HHHHHTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHH
T ss_pred             HHHHHHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHH
Confidence            344444333 67899999999999999999999999985 55667777654

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=91.47  E-value=0.094  Score=51.08  Aligned_cols=40  Identities=25%  Similarity=0.349  Sum_probs=35.4

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ++|+||++.|.|..+ ||+++|+.|...|++|+++++++.+
T Consensus         2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~   42 (258)
T d1ae1a_           2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKE   42 (258)
T ss_dssp             CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            368999999999655 9999999999999999999987643

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=91.46  E-value=0.065  Score=47.88  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      .+++|.|||.|.+|..+|..++.+|.+|.++..++
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~   36 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD   36 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC
Confidence            46899999999999999999999999877765443

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.39  E-value=0.18  Score=46.13  Aligned_cols=64  Identities=11%  Similarity=0.050  Sum_probs=42.1

Q ss_pred             cEEEEEecChhH--HHHHHHHHhC---C-CEEEEEecCCccH-HHHh---------hcCc-----eecCHHHHhccCcEE
Q psy7896         349 KVAVVAGYGDVG--KGCAQSLRLF---G-SRVIVTEIDPINA-LQAS---------MEGY-----EVTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG~G~IG--~~vA~~l~~f---G-a~Viv~d~dp~~a-l~a~---------~~G~-----~v~~Leell~~aDiI  407 (718)
                      .+|.|||.|.+|  ..++..++..   . .++..+|+++.++ .++.         ..+.     ...+..+.++.||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            479999999876  4555555543   2 4888899877431 1110         1122     235788999999999


Q ss_pred             EEcCC
Q psy7896         408 VTTTG  412 (718)
Q Consensus       408 i~atg  412 (718)
                      +.+.+
T Consensus        82 v~ta~   86 (169)
T d1s6ya1          82 TTQFR   86 (169)
T ss_dssp             EECCC
T ss_pred             EEccc
Confidence            99765

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=91.35  E-value=0.087  Score=51.33  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=35.8

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ++|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         4 f~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           4 WNLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE   44 (259)
T ss_dssp             TCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            368999999999986 9999999999999999999987643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.34  E-value=0.086  Score=51.71  Aligned_cols=41  Identities=24%  Similarity=0.353  Sum_probs=36.3

Q ss_pred             cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         343 DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       343 g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ...|+||++.|.|. |.||+++|+.|...|++|++.++++.+
T Consensus        20 ~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          20 PNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            35899999999995 669999999999999999999987654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.059  Score=50.55  Aligned_cols=39  Identities=26%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      ++|+|+|.|..|.++|..+...|+.|+++|.++.....+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a   43 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKS   43 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHH
Confidence            799999999999999999999999999999999865433

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.31  E-value=0.034  Score=53.66  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      +|+|||+|++|+.+|..|+++|+.|+|+|..+..
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~   37 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPD   37 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            6999999999999999999999999999988754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.29  E-value=0.043  Score=49.15  Aligned_cols=33  Identities=18%  Similarity=0.129  Sum_probs=30.7

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      |+|||.|..|+.+|..|.+.|.+|+|+|..+..
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDHY   40 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCC
Confidence            899999999999999999999999999987653

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.25  E-value=0.056  Score=49.37  Aligned_cols=35  Identities=11%  Similarity=0.008  Sum_probs=31.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +++.|.|||.|++|...|..|..+|++|++++..+
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~   38 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGME   38 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeec
Confidence            46789999999999999999999999999998654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=91.12  E-value=0.067  Score=48.17  Aligned_cols=36  Identities=33%  Similarity=0.422  Sum_probs=33.8

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      |+++|||+|.+|..+|..|...|+.|++++.++.+.
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~   37 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRI   37 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            799999999999999999999999999999988764

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.09  E-value=0.07  Score=49.47  Aligned_cols=92  Identities=20%  Similarity=0.141  Sum_probs=60.4

Q ss_pred             ccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHH-----Hh--ccCcEEEEcCCCC
Q psy7896         344 IMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEE-----AA--KEGGIFVTTTGCK  414 (718)
Q Consensus       344 ~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Lee-----ll--~~aDiIi~atgt~  414 (718)
                      ....+.+|.|.|. |.+|....|.++.+|++|+++...+.+...+...|... .+-++     .+  ...|.++-+.+..
T Consensus        28 ~~~~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~~~~~~~~l~~~~~~~vvD~Vgg~  107 (177)
T d1o89a2          28 VRPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGASRVLPRDEFAESRPLEKQVWAGAIDTVGDK  107 (177)
T ss_dssp             CCGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGGGSSSCCSSCCCCEEEEEESSCHH
T ss_pred             CCCCCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccccccccccHHHHHHHHhhcCCeeEEEcchH
Confidence            3445567777765 89999999999999999999887776644333445432 11111     11  1236665554432


Q ss_pred             CCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         415 DIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       415 ~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                        .-.+.++.|+++..++++|..
T Consensus       108 --~~~~~l~~l~~~Griv~~G~~  128 (177)
T d1o89a2         108 --VLAKVLAQMNYGGCVAACGLA  128 (177)
T ss_dssp             --HHHHHHHTEEEEEEEEECCCT
T ss_pred             --HHHHHHHHhccccceEeeccc
Confidence              234678889999999999864

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=91.05  E-value=0.076  Score=49.11  Aligned_cols=34  Identities=26%  Similarity=0.276  Sum_probs=31.1

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ++|.|||.|..|...|..|+..|.+|+++|..+.
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~   34 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESSAR   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            4699999999999999999999999999997653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.98  E-value=0.047  Score=48.87  Aligned_cols=36  Identities=25%  Similarity=0.220  Sum_probs=31.6

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ++++|+|||.|++|..+|..|+++|..|++++..+.
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~   37 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDA   37 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCc
Confidence            568999999999999999999999999888765543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.96  E-value=0.056  Score=50.82  Aligned_cols=34  Identities=29%  Similarity=0.340  Sum_probs=31.0

Q ss_pred             EEEEEecCCCChhHHHHHHhcCC-eEEEeecCchh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPIN  304 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r  304 (718)
                      +|+|||+|++|+.+|..|++.|+ .|+|+|..+..
T Consensus         3 ~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           3 DILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   37 (288)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence            68999999999999999999996 99999987654

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.91  E-value=0.11  Score=50.60  Aligned_cols=40  Identities=35%  Similarity=0.554  Sum_probs=35.4

Q ss_pred             cccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         343 DIMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       343 g~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |..|+||++.|.|.+ .||+++|+.|...|++|+++++++.
T Consensus         1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~   41 (250)
T d1ydea1           1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDES   41 (250)
T ss_dssp             CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred             CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            346899999999985 5999999999999999999998764

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.90  E-value=0.099  Score=50.67  Aligned_cols=40  Identities=18%  Similarity=0.418  Sum_probs=36.4

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .+|.||++.|.|.+. ||+++|+.+...|++|+++++++.+
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            468999999999987 9999999999999999999987654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=90.88  E-value=0.2  Score=44.31  Aligned_cols=38  Identities=18%  Similarity=0.101  Sum_probs=33.3

Q ss_pred             cCCcEEEEE--ecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         267 LAGKVAVVA--GYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvVi--GyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ..++.++|+  |.|++|..+|.+|+++|+.||+++..+..
T Consensus        37 ~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          37 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLA   76 (156)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTT
T ss_pred             ccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            467788887  89999999999999999999999887653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.82  E-value=0.11  Score=50.00  Aligned_cols=38  Identities=26%  Similarity=0.279  Sum_probs=34.9

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|++++++..
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            58999999999986 999999999999999999988764

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.81  E-value=0.27  Score=42.18  Aligned_cols=44  Identities=23%  Similarity=0.274  Sum_probs=38.0

Q ss_pred             cccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhh
Q psy7896         263 TDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINAL  306 (718)
Q Consensus       263 t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v  306 (718)
                      |++..++.+|.|+|.|--|+-.+.+++++|++|.++|.++..-.
T Consensus         5 ~~~~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~PA   48 (111)
T d1kjqa2           5 TALRPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAPA   48 (111)
T ss_dssp             CTTSTTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCGG
T ss_pred             CCCCCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCch
Confidence            44556788999999999999999999999999999997776543

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.79  E-value=0.22  Score=41.30  Aligned_cols=62  Identities=15%  Similarity=0.126  Sum_probs=40.7

Q ss_pred             cEEEEEecChhHH-HHHHHHHhCCCEEEEEecCCccHHHH-hhcCceec--CHHHHhccCcEEEEc
Q psy7896         349 KVAVVAGYGDVGK-GCAQSLRLFGSRVIVTEIDPINALQA-SMEGYEVT--TMEEAAKEGGIFVTT  410 (718)
Q Consensus       349 ktVGIIG~G~IG~-~vA~~l~~fGa~Viv~d~dp~~al~a-~~~G~~v~--~Leell~~aDiIi~a  410 (718)
                      ++|=+||-|.+|+ .+|+.|+..|..|.++|..+....+. ...|..+.  .-.+-++.+|+||..
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S   67 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT   67 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence            5788999999999 67999999999999999776432221 23354331  111223456665554

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=90.78  E-value=0.12  Score=49.82  Aligned_cols=39  Identities=18%  Similarity=0.339  Sum_probs=35.1

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.++ ||+++|+.|...|++|++.+++..+
T Consensus         2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL   41 (241)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            37899999999987 9999999999999999999887643

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.77  E-value=0.076  Score=51.83  Aligned_cols=40  Identities=18%  Similarity=0.279  Sum_probs=36.1

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ++|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE   44 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            368999999999987 9999999999999999999987644

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.092  Score=50.72  Aligned_cols=38  Identities=29%  Similarity=0.514  Sum_probs=34.2

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      |+||++.|.|.++ ||+++|+.|...|++|+++++++.+
T Consensus         4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~   42 (245)
T d2ag5a1           4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK   42 (245)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            8999999998765 9999999999999999999987643

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=90.66  E-value=0.12  Score=46.76  Aligned_cols=38  Identities=21%  Similarity=0.394  Sum_probs=32.9

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCccH
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  384 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~a  384 (718)
                      .|.+|.|+|.|.+|...++.++.+|+ +|++++.++.+.
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~   70 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKL   70 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHH
T ss_pred             CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHH
Confidence            58999999999999999999999997 667788777543

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=90.48  E-value=0.11  Score=50.46  Aligned_cols=39  Identities=26%  Similarity=0.425  Sum_probs=35.1

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47999999999976 9999999999999999999987643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=90.40  E-value=0.27  Score=41.04  Aligned_cols=64  Identities=19%  Similarity=0.169  Sum_probs=42.6

Q ss_pred             cCcEEEEEecChhHHHH-HHHHHhCCCEEEEEecCCccHHH-HhhcCceec--CHHHHhccCcEEEEc
Q psy7896         347 AGKVAVVAGYGDVGKGC-AQSLRLFGSRVIVTEIDPINALQ-ASMEGYEVT--TMEEAAKEGGIFVTT  410 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~v-A~~l~~fGa~Viv~d~dp~~al~-a~~~G~~v~--~Leell~~aDiIi~a  410 (718)
                      +.|++=+||.|.+|+.- |+.|+..|..|.++|.......+ ....|..+.  .-.+.++..|+||..
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S   74 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVS   74 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEEC
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEEC
Confidence            56899999999999655 99999999999999976443221 123454331  122334556666554

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.38  E-value=0.12  Score=50.45  Aligned_cols=39  Identities=26%  Similarity=0.504  Sum_probs=34.8

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            48999999999776 9999999999999999999987643

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.22  E-value=0.088  Score=46.86  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=37.4

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhh
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME  311 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~Avae  311 (718)
                      -+.||+++|||+|.+|..-++.|.+.|..|+|+..++.........
T Consensus        10 ~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~~~~   55 (150)
T d1kyqa1          10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLHKSIIPKFG   55 (150)
T ss_dssp             CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEECTTHHHHHC
T ss_pred             eeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHH
Confidence            3789999999999999999999999999999996554444333333

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.06  Score=51.70  Aligned_cols=32  Identities=34%  Similarity=0.314  Sum_probs=29.9

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      |+|||.|..|+.+|..|++.|.+|+|+|..+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~   33 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARDR   33 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            78999999999999999999999999997664

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.18  E-value=0.14  Score=43.52  Aligned_cols=36  Identities=22%  Similarity=0.162  Sum_probs=30.3

Q ss_pred             cCcEEEEEecChhHHHHHHHHHh---CCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRL---FGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~---fGa~Viv~d~dp~  382 (718)
                      ..|++.|||.|.||..+|..+.+   +|.+|+++++.+.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~   55 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDM   55 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccccc
Confidence            35899999999999999987655   4899999987654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.11  E-value=0.13  Score=49.99  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=34.9

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      |+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~   46 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN   46 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            8999999999876 9999999999999999999987643

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.02  E-value=7.4  Score=36.87  Aligned_cols=33  Identities=6%  Similarity=-0.132  Sum_probs=17.4

Q ss_pred             eCCChHHHHHHHHHHhhcceecCCCCeEEEecC
Q psy7896         595 KGETDEEYVWCIEQTLVDRYTLPNGNHIILLAE  627 (718)
Q Consensus       595 ~ge~~eey~~~~~~~l~~~~~~~~~~~~i~ddg  627 (718)
                      |--++||--..+.-.+++...+=+|-.|.||-|
T Consensus       237 R~~~peevA~~v~fL~s~~s~~itG~~i~vDGG  269 (272)
T d1g0oa_         237 RVGLPIDIARVVCFLASNDGGWVTGKVIGIDGG  269 (272)
T ss_dssp             SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred             CCcCHHHHHHHHHHHhCchhcCccCceEeECCC
Confidence            334555555555555543322336666776655

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.16  Score=47.17  Aligned_cols=36  Identities=25%  Similarity=0.337  Sum_probs=32.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +-++|.|||.|--|...|..|+..|.+|+++|..+.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r   39 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDR   39 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            346799999999999999999999999999987653

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.99  E-value=0.11  Score=46.30  Aligned_cols=33  Identities=24%  Similarity=0.308  Sum_probs=29.7

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      +|.|||.|..|...|..|+..|. +|+++|..+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~   35 (347)
T d1b5qa1           2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDH   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCC
Confidence            48999999999999999999996 6999997653

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.94  E-value=0.16  Score=48.99  Aligned_cols=39  Identities=18%  Similarity=0.367  Sum_probs=34.7

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999865 9999999999999999999987643

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.88  E-value=0.11  Score=50.41  Aligned_cols=39  Identities=28%  Similarity=0.480  Sum_probs=34.6

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999965 9999999999999999999987643

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.87  E-value=0.18  Score=45.55  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=30.3

Q ss_pred             ccCcEEEEEecChhHHHHHHHHHhCCCE-EEEEecCC
Q psy7896         346 LAGKVAVVAGYGDVGKGCAQSLRLFGSR-VIVTEIDP  381 (718)
Q Consensus       346 L~GktVGIIG~G~IG~~vA~~l~~fGa~-Viv~d~dp  381 (718)
                      -.+++|.|||.|++|..+|..+..+|++ |+++.+.+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~   79 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKG   79 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCC
Confidence            3577899999999999999999999985 76765544

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=89.86  E-value=0.096  Score=47.00  Aligned_cols=42  Identities=24%  Similarity=0.181  Sum_probs=35.5

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG  312 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG  312 (718)
                      ||.|||.|..|..+|..|++.|+.|+++|.++.....+...+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~   43 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ   43 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh
Confidence            689999999999999999999999999999877654444333

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=89.85  E-value=0.45  Score=43.75  Aligned_cols=93  Identities=13%  Similarity=0.050  Sum_probs=64.5

Q ss_pred             cccCcEEEEEecC--hhHHHHHHHHHhCCCEEEEEecCCcc---HH------HHhhcCce---ecCHHHHhccCcEEEEc
Q psy7896         345 MLAGKVAVVAGYG--DVGKGCAQSLRLFGSRVIVTEIDPIN---AL------QASMEGYE---VTTMEEAAKEGGIFVTT  410 (718)
Q Consensus       345 eL~GktVGIIG~G--~IG~~vA~~l~~fGa~Viv~d~dp~~---al------~a~~~G~~---v~~Leell~~aDiIi~a  410 (718)
                      .+.|.+|++||=|  ++...++..+..||+++.++-+....   ..      .....|..   ..+++++++.+|+|.+.
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~   81 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD   81 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence            5789999999976  69999999999999999998542211   10      11122332   45799999999999874


Q ss_pred             CC------------------CCCCcCHHHHhcCCCCeEEEEcCCC
Q psy7896         411 TG------------------CKDIIRGEHFLQMRDDAIVCNIGHF  437 (718)
Q Consensus       411 tg------------------t~~lI~~e~l~~MK~gAiLIN~GRg  437 (718)
                      .-                  ....++.......++++++.-+.-.
T Consensus        82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~LPa  126 (183)
T d1duvg2          82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCLPA  126 (183)
T ss_dssp             CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECSCC
T ss_pred             ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccCcc
Confidence            11                  1123444445668999999998764

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=89.85  E-value=0.18  Score=48.62  Aligned_cols=39  Identities=23%  Similarity=0.503  Sum_probs=35.2

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~   41 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP   41 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH
Confidence            37899999999976 9999999999999999999987754

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.72  E-value=0.2  Score=44.30  Aligned_cols=40  Identities=18%  Similarity=0.071  Sum_probs=35.2

Q ss_pred             cccccCcEEEEE--ecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         343 DIMLAGKVAVVA--GYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       343 g~eL~GktVGII--G~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +...-++.+.|+  |.|.||..+|..|+.+|++|+++++.+.
T Consensus        34 ~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~   75 (156)
T d1djqa2          34 GKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHL   75 (156)
T ss_dssp             TCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCc
Confidence            455678888888  8899999999999999999999988764

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=89.71  E-value=0.11  Score=50.04  Aligned_cols=39  Identities=31%  Similarity=0.478  Sum_probs=34.6

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      +|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence            47899999999776 9999999999999999999887643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.62  E-value=0.22  Score=44.63  Aligned_cols=56  Identities=23%  Similarity=0.352  Sum_probs=41.4

Q ss_pred             ccchh-hHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         249 YGCRE-SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       249 ~G~~e-s~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      ++|+- ..+.++.+. ..+..|.+|+|.|.|++|..+++.++.+|. .|++++.++.+.
T Consensus         9 l~ca~~Tay~al~~~-~~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~   66 (176)
T d2fzwa2           9 LGCGISTGYGAAVNT-AKLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKF   66 (176)
T ss_dssp             GGTHHHHHHHHHHTT-TCCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGH
T ss_pred             hhcHHHHHHHHHHHh-hCCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHH
Confidence            45542 334555443 236789999999999999999999999996 677777777764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=89.47  E-value=0.15  Score=49.98  Aligned_cols=39  Identities=18%  Similarity=0.333  Sum_probs=34.8

Q ss_pred             cccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+ .||+++|+.|...|++|+++++++.+
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4789999999985 59999999999999999999987643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.37  E-value=0.18  Score=50.32  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=33.1

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +.|+|.|||.|..|..+|..|+..|.+|+++|..+.
T Consensus         1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~   36 (314)
T d2bi7a1           1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence            358999999999999999999999999999998765

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.34  E-value=0.29  Score=46.52  Aligned_cols=62  Identities=18%  Similarity=0.140  Sum_probs=41.4

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHh--------------------CCC-EEEEEecCCccHHHHhhcCceecCHHHHh
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRL--------------------FGS-RVIVTEIDPINALQASMEGYEVTTMEEAA  401 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~--------------------fGa-~Viv~d~dp~~al~a~~~G~~v~~Leell  401 (718)
                      ...+.||+|.|||.|+++..+|+.|..                    .|+ +|.++.+.+....     -+....+.|+.
T Consensus        34 ~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~-----~ft~~Elre~~  108 (225)
T d1cjca1          34 APDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQV-----AFTIKELREMI  108 (225)
T ss_dssp             CCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGC-----CCCHHHHHHHH
T ss_pred             CccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhC-----CCCchhhhccc
Confidence            456789999999999999999999976                    466 5777655442211     12223355666


Q ss_pred             ccCcEEEE
Q psy7896         402 KEGGIFVT  409 (718)
Q Consensus       402 ~~aDiIi~  409 (718)
                      ...++.+.
T Consensus       109 ~~~~~~~~  116 (225)
T d1cjca1         109 QLPGTRPM  116 (225)
T ss_dssp             TCTTEEEE
T ss_pred             ccCCCcce
Confidence            65665544

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=89.32  E-value=0.058  Score=49.25  Aligned_cols=36  Identities=11%  Similarity=-0.011  Sum_probs=32.0

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .++.|+|||.||+|+++|.+|.+.|.+|+++|..+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecc
Confidence            457899999999999999999999999999986543

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.26  E-value=0.16  Score=49.41  Aligned_cols=41  Identities=34%  Similarity=0.466  Sum_probs=35.4

Q ss_pred             cccccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         343 DIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       343 g~eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ...|+||++.|.|. +.||+++|+.|...|++|+++++++..
T Consensus        13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~   54 (272)
T d1g0oa_          13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTE   54 (272)
T ss_dssp             GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred             CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchH
Confidence            35699999999995 569999999999999999998876543

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.15  Score=47.08  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=29.3

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|||.|..|...|..|+.+|.+|+++|.++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            7999999999999999999999999998764

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.19  E-value=0.19  Score=47.87  Aligned_cols=37  Identities=27%  Similarity=0.374  Sum_probs=33.2

Q ss_pred             ccCcEEEEEecCh---hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGD---VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~---IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |+||++.|.|.+.   ||+++|+.|...|++|++.++++.
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHH
Confidence            7899999999864   999999999999999999887654

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.1  Score=50.16  Aligned_cols=39  Identities=21%  Similarity=0.404  Sum_probs=34.8

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~~  383 (718)
                      .|+.++|.|||.|.+|..+|..|.+.|. +++++|.|...
T Consensus        27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~Ve   66 (247)
T d1jw9b_          27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVS   66 (247)
T ss_dssp             HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCC
T ss_pred             HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcccc
Confidence            3789999999999999999999999999 78889877653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.16  Score=50.55  Aligned_cols=39  Identities=31%  Similarity=0.503  Sum_probs=35.4

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            58999999999876 9999999999999999999987654

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.10  E-value=0.12  Score=50.48  Aligned_cols=39  Identities=18%  Similarity=0.309  Sum_probs=35.0

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            37899999999876 9999999999999999999987643

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=89.05  E-value=0.15  Score=45.53  Aligned_cols=32  Identities=19%  Similarity=0.097  Sum_probs=29.2

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      -|.|||.|++|...|..+..+|++|+++|.++
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            38999999999999999999999999998654

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=88.99  E-value=0.19  Score=46.11  Aligned_cols=65  Identities=14%  Similarity=0.146  Sum_probs=42.9

Q ss_pred             CcEEEEEecChhHHHHH---HHHH--hC-CCEEEEEecCCccHHHH--------hhcC--ce---ecCHHHHhccCcEEE
Q psy7896         348 GKVAVVAGYGDVGKGCA---QSLR--LF-GSRVIVTEIDPINALQA--------SMEG--YE---VTTMEEAAKEGGIFV  408 (718)
Q Consensus       348 GktVGIIG~G~IG~~vA---~~l~--~f-Ga~Viv~d~dp~~al~a--------~~~G--~~---v~~Leell~~aDiIi  408 (718)
                      +.+|+|||.|.+|...+   ..++  .+ +.++..+|+|+.+....        ...+  ..   ..+++|+++.||+|+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv   81 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI   81 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence            46899999999997643   2332  33 45999999998653110        0111  22   247889999999998


Q ss_pred             EcCC
Q psy7896         409 TTTG  412 (718)
Q Consensus       409 ~atg  412 (718)
                      ++.+
T Consensus        82 ~~~~   85 (171)
T d1obba1          82 NTAM   85 (171)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            7643

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=88.94  E-value=0.18  Score=48.99  Aligned_cols=38  Identities=18%  Similarity=0.447  Sum_probs=34.7

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      |+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            7899999999886 9999999999999999999987654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.89  E-value=0.12  Score=47.39  Aligned_cols=35  Identities=11%  Similarity=-0.044  Sum_probs=31.7

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +.++|.|||.|+.|...|..|..+|++|+++|..+
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~   38 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWM   38 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeec
Confidence            45899999999999999999999999999998554

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=88.89  E-value=0.13  Score=49.93  Aligned_cols=40  Identities=33%  Similarity=0.578  Sum_probs=35.6

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      ..|+||++.|.|.+. ||+++|+.|...|++|++.++++.+
T Consensus         7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA   47 (255)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            468999999999875 9999999999999999999987643

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.82  E-value=0.32  Score=45.86  Aligned_cols=26  Identities=38%  Similarity=0.417  Sum_probs=23.5

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHH
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLR  368 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~  368 (718)
                      ...+.||+|+|||.|+++..+|+.|.
T Consensus        34 ~~~~~gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          34 SPDLSGARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             CCCCCSSEEEEECCSHHHHHHHHHHH
T ss_pred             CccccCceEEEECCCchhHhhhhhhc
Confidence            45678999999999999999999886

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=88.81  E-value=0.18  Score=48.79  Aligned_cols=39  Identities=28%  Similarity=0.420  Sum_probs=35.0

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            47899999999865 9999999999999999999987643

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.73  E-value=0.17  Score=44.95  Aligned_cols=32  Identities=19%  Similarity=0.148  Sum_probs=30.0

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |.|||.|..|..+|..|...|.+|+++|..+.
T Consensus         8 viViGaG~~Gl~~A~~La~~G~~V~vlE~~~~   39 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVDGKKVLHIDKQDH   39 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCCEEEEcCCCC
Confidence            89999999999999999999999999998764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.71  E-value=0.18  Score=46.94  Aligned_cols=33  Identities=27%  Similarity=0.178  Sum_probs=29.4

Q ss_pred             EEEEEecChhHHHHHHHHH--hCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLR--LFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~--~fGa~Viv~d~dp~  382 (718)
                      +|+|||.|..|..+|+.|+  ++|.+|+++|..|.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            7999999999999999884  47999999998774

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=88.63  E-value=0.086  Score=49.01  Aligned_cols=38  Identities=29%  Similarity=0.348  Sum_probs=34.4

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQ  307 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~  307 (718)
                      ++|+|||.|..|.++|..+...|+.|+++|.++.....
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~   42 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQ   42 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhh
Confidence            68999999999999999999999999999999876543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=88.63  E-value=0.17  Score=48.87  Aligned_cols=40  Identities=30%  Similarity=0.289  Sum_probs=35.3

Q ss_pred             ccccCcEEEEEecC-hhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         344 IMLAGKVAVVAGYG-DVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       344 ~eL~GktVGIIG~G-~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      +.|.||++.|.|.+ .||+++|+.|...|++|+++++++..
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKS   46 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence            46889999999986 49999999999999999999987643

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.41  E-value=0.12  Score=46.93  Aligned_cols=64  Identities=19%  Similarity=0.152  Sum_probs=40.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC--EEEEEecCCccHHHHhhcCceecCHHHHhc--cCcEEEEcCCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEGYEVTTMEEAAK--EGGIFVTTTGC  413 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa--~Viv~d~dp~~al~a~~~G~~v~~Leell~--~aDiIi~atgt  413 (718)
                      .+|||||+|.+|+..++.++...-  .+.+++.+..+.. ....+....+++|++.  +.|+|+.+|.+
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~l~~~~iD~V~I~tp~   75 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRREL-GSLDEVRQISLEDALRSQEIDVAYICSES   75 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCC-CEETTEEBCCHHHHHHCSSEEEEEECSCG
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchHHH-HHhhccCcCCHHHHHhCCCcchhhhcccc
Confidence            479999999999998888765431  2333332222111 1223455668999986  45778887765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=88.31  E-value=0.098  Score=49.69  Aligned_cols=33  Identities=27%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      -|+|||.|.+|.++|+.|.++|.+|+|.|.+..
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~~   38 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGTM   38 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSST
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            389999999999999999999999999998654

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=88.30  E-value=0.15  Score=49.94  Aligned_cols=38  Identities=21%  Similarity=0.409  Sum_probs=34.5

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      |+||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDR   40 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            7899999999976 9999999999999999999987643

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=88.29  E-value=0.18  Score=48.87  Aligned_cols=37  Identities=35%  Similarity=0.556  Sum_probs=33.4

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |+||++.|.|.+. ||+++|+.|...|++|++.+++..
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            7899999999887 999999999999999999987643

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.13  E-value=0.16  Score=50.60  Aligned_cols=38  Identities=26%  Similarity=0.534  Sum_probs=34.8

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCC
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      ..|+||++.|-|.++ ||+++|+.|...|++|++.|+++
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence            468999999999987 99999999999999999998765

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.11  E-value=0.41  Score=43.09  Aligned_cols=40  Identities=28%  Similarity=0.391  Sum_probs=34.6

Q ss_pred             ccCCcEEEEEec-CCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         266 MLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       266 ~~~Gk~vvViGy-G~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      +..|++|+|+|. |++|..+.+.++.+|++|+++..++.+.
T Consensus        26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~   66 (174)
T d1yb5a2          26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQ   66 (174)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             CCCCCEEEEEeccccccccccccccccCccccccccccccc
Confidence            568999999996 9999999999999999998887666543

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=88.07  E-value=0.42  Score=40.56  Aligned_cols=65  Identities=20%  Similarity=0.060  Sum_probs=46.1

Q ss_pred             cCcEEEEEecC----------hhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCcee-cCHHHHhccCcEEEEcCCC
Q psy7896         347 AGKVAVVAGYG----------DVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEV-TTMEEAAKEGGIFVTTTGC  413 (718)
Q Consensus       347 ~GktVGIIG~G----------~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v-~~Leell~~aDiIi~atgt  413 (718)
                      ..|+|||+|+=          .-...+++.|...|++|.+||+.-..  .....+..+ .+++++++.+|+|++.+..
T Consensus        14 ~~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~--~~~~~~~~~~~~l~~~~~~sDiII~~~~~   89 (108)
T d1dlja3          14 PVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNK--LESEDQSVLVNDLENFKKQANIIVTNRYD   89 (108)
T ss_dssp             SSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSC--CCTTCCSEECCCHHHHHHHCSEEECSSCC
T ss_pred             CCCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcCh--hHhccCCEEEeCHHHHHhhCCEEEEcCCc
Confidence            34689999972          33788999999999999999643221  112234443 4799999999988876544

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.99  E-value=0.13  Score=49.30  Aligned_cols=33  Identities=21%  Similarity=0.174  Sum_probs=30.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|.|||.|..|..+|..|+..|.+|+++|..|.
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            599999999999999999999999999998773

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.98  E-value=0.1  Score=47.88  Aligned_cols=36  Identities=11%  Similarity=-0.050  Sum_probs=32.1

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      +.++|+|||.|+.|+++|.+|.++|.+|+++|..+.
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecc
Confidence            457899999999999999999999999999986554

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.35  Score=48.48  Aligned_cols=100  Identities=8%  Similarity=0.140  Sum_probs=71.6

Q ss_pred             hcccccCcEEEEEecChhHHHHHHHHHhCCC-----------EEEEEecCCc------------cHHHHhh-cCceecCH
Q psy7896         342 LDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-----------RVIVTEIDPI------------NALQASM-EGYEVTTM  397 (718)
Q Consensus       342 ~g~eL~GktVGIIG~G~IG~~vA~~l~~fGa-----------~Viv~d~dp~------------~al~a~~-~G~~v~~L  397 (718)
                      .+..|...+|.|.|.|.-|..+|+.+...++           ++.++|++-.            +...+.. ......+|
T Consensus        19 ~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i~lvD~~Glv~~~r~~~~~~~k~~~a~~~~~~~~~~L   98 (294)
T d1pj3a1          19 ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTF   98 (294)
T ss_dssp             HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTEEEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSH
T ss_pred             hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccEEEEeCCCCccCCCCcccHHHHHHhhccccccchhHH
Confidence            4678899999999999999999999865543           4888875321            1110100 00112478


Q ss_pred             HHHhc--cCcEEEEcCCCCCCcCHHHHhc---CCCCeEEEEcCCCCccc
Q psy7896         398 EEAAK--EGGIFVTTTGCKDIIRGEHFLQ---MRDDAIVCNIGHFDCEI  441 (718)
Q Consensus       398 eell~--~aDiIi~atgt~~lI~~e~l~~---MK~gAiLIN~GRgd~Ei  441 (718)
                      .|+++  +.|+++-+++..++++++.++.   |.+..++.-.+.-..++
T Consensus        99 ~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~  147 (294)
T d1pj3a1          99 EDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQA  147 (294)
T ss_dssp             HHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGC
T ss_pred             HHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCCCcC
Confidence            99887  8999999988889999998864   56889999888764443

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=87.86  E-value=0.21  Score=48.21  Aligned_cols=38  Identities=39%  Similarity=0.513  Sum_probs=33.3

Q ss_pred             ccccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCC
Q psy7896         344 IMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       344 ~eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +.|.||++.|.|.+. ||+++|+.|...|++|++...+.
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~   40 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSS   40 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            468999999999877 99999999999999999865444

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=87.75  E-value=0.15  Score=47.48  Aligned_cols=38  Identities=24%  Similarity=0.327  Sum_probs=34.5

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+.|+++.|+|+|.+|+.+|+.+..+|.+|.++|....
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d1sc6a1          41 EARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENK   78 (188)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             cccceEEEEeecccchhhhhhhcccccceEeecccccc
Confidence            36899999999999999999999999999999986544

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.72  E-value=0.17  Score=49.13  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=34.4

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (264)
T d1spxa_           2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAER   41 (264)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            37899999999864 9999999999999999999887643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=87.71  E-value=0.17  Score=48.91  Aligned_cols=38  Identities=29%  Similarity=0.351  Sum_probs=34.2

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      |+||++.|.|.+. ||+++|+.|...|++|+++++++..
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            8999999999765 9999999999999999999887643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.60  E-value=0.29  Score=41.67  Aligned_cols=37  Identities=11%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCC---eEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGS---RVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv---~VtV~D~dp~r  304 (718)
                      ..++++|+|.|++|..+|..+..+|.   .|++++..+..
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            45899999999999999988777664   69999876653

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.54  E-value=0.26  Score=47.53  Aligned_cols=38  Identities=32%  Similarity=0.537  Sum_probs=34.1

Q ss_pred             ccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         346 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       346 L~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      +.||++.|.|.+. ||+++|+.|...|++|+++++++.+
T Consensus         1 i~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            4699999999866 9999999999999999999987654

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=87.48  E-value=0.17  Score=49.01  Aligned_cols=38  Identities=34%  Similarity=0.434  Sum_probs=34.2

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|+||++.|.|.+. ||+++|+.|...|++|+++++++.
T Consensus         3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence            38999999999775 999999999999999999988764

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.42  E-value=0.12  Score=47.54  Aligned_cols=32  Identities=22%  Similarity=0.169  Sum_probs=29.6

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ++|||.|+.|+.+|..+.++|.+|+++|..+.
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~   37 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGA   37 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            78999999999999999999999999997654

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.35  E-value=0.28  Score=45.72  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=30.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      .+|.|||.|..|..+|..|+..|. +|+++|..+.
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~   36 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSE   36 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            379999999999999999999995 9999998764

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=87.24  E-value=0.32  Score=44.55  Aligned_cols=51  Identities=14%  Similarity=0.157  Sum_probs=41.6

Q ss_pred             hHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       254 s~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .+++++.. .+..+.+++++|+|+|..+++++++|...|+ .++++..++.+.
T Consensus         4 Gf~~~l~~-~~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~   55 (182)
T d1vi2a1           4 GHIRAIKE-SGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFF   55 (182)
T ss_dssp             HHHHHHHH-TTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTH
T ss_pred             HHHHHHHH-cCCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHH
Confidence            45556654 3667899999999999999999999999998 788888776654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=0.24  Score=45.51  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=29.7

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |.|||.|..|..+|..+..+|.+|.++|.++.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            78999999999999999999999999987653

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=87.15  E-value=0.13  Score=48.21  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      |+|||+|++|+.+|..|.+.|.+|+++|..+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            78999999999999999999999999997654

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=87.13  E-value=0.13  Score=46.02  Aligned_cols=32  Identities=19%  Similarity=0.097  Sum_probs=29.2

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  302 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp  302 (718)
                      -|+|||.||+|+.+|.++.++|.+|++.|..+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~   34 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERF   34 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSST
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEec
Confidence            37899999999999999999999999998654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.08  E-value=0.59  Score=41.76  Aligned_cols=48  Identities=21%  Similarity=0.344  Sum_probs=38.4

Q ss_pred             HHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         257 DGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       257 ~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .++.+. ..+..|.+|+|+|.|++|..++..++..|. +|++++.++.+.
T Consensus        18 ~a~~~~-a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl   66 (175)
T d1cdoa2          18 GAAVNT-AKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKF   66 (175)
T ss_dssp             HHHHTT-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGH
T ss_pred             HHHHHh-hCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHH
Confidence            344432 236789999999999999999989999988 688888888765

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=86.98  E-value=0.22  Score=41.93  Aligned_cols=37  Identities=14%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEec
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEI  379 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~  379 (718)
                      +.+++||+|+|||.|+.|..+|.-+...+.+|++..+
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~   63 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL   63 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEEC
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEe
Confidence            4578999999999999999999999998888765543

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=86.88  E-value=0.2  Score=45.90  Aligned_cols=31  Identities=23%  Similarity=0.183  Sum_probs=28.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|||.|..|...|..+..+|.+|+++|..+
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~   36 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRG   36 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            7899999999999999999999999998654

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.85  E-value=0.19  Score=46.48  Aligned_cols=34  Identities=18%  Similarity=0.201  Sum_probs=30.7

Q ss_pred             cEEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      ..|.|||.|..|...|..++.+|.+|+++|.++.
T Consensus         6 ~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~   39 (220)
T d1lvla1           6 TTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL   39 (220)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCT
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            3589999999999999999999999999987653

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.82  E-value=0.13  Score=47.75  Aligned_cols=33  Identities=18%  Similarity=0.206  Sum_probs=30.3

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .++|||.|++|+.+|..++++|.+|+++|..+.
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~   39 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQAL   39 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECSSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            489999999999999999999999999997653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.79  E-value=0.14  Score=47.79  Aligned_cols=32  Identities=28%  Similarity=0.185  Sum_probs=29.8

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ++|||.||.|+++|.+|+++|.+|+++|..+.
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~~   40 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYKT   40 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            78999999999999999999999999997654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=86.37  E-value=0.35  Score=44.53  Aligned_cols=51  Identities=29%  Similarity=0.195  Sum_probs=43.8

Q ss_pred             HHHHHhhhcccccCCcEEEEEe-cCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         255 LVDGLKRATDIMLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       255 ~~~~i~r~t~~~~~Gk~vvViG-yG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .+..+....+..+.||+++|.| .|.+|+.+++.|.++|.+|++++.++.+.
T Consensus         9 ~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~   60 (191)
T d1luaa1           9 GVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA   60 (191)
T ss_dssp             HHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHH
Confidence            4455666667789999999999 68999999999999999999999887765

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=86.28  E-value=0.33  Score=46.87  Aligned_cols=38  Identities=13%  Similarity=-0.012  Sum_probs=33.2

Q ss_pred             cccCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         345 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       345 eL~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +|+||+|.|.|.+. ||.++|+.+...|++|++..+++.
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            58999999999986 999999999999999887755443

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=86.27  E-value=0.2  Score=46.86  Aligned_cols=38  Identities=18%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+.|+++.|+|+|.+|+.+|+.++.+|.+|.++|....
T Consensus        44 ~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   81 (191)
T d1gdha1          44 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA   81 (191)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             eecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence            46899999999999999999999999999999886544

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=86.22  E-value=0.16  Score=46.88  Aligned_cols=31  Identities=16%  Similarity=0.326  Sum_probs=29.2

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  302 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp  302 (718)
                      ++|||.|+.|..+|..|+++|.+|+++|.++
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~   35 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEAKE   35 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            7899999999999999999999999999764

>d1js1x2 c.78.1.1 (X:164-324) Transcarbamylase-like protein {Bacteroides fragilis [TaxId: 817]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Transcarbamylase-like protein
species: Bacteroides fragilis [TaxId: 817]

Probab=86.20  E-value=1.6  Score=39.47  Aligned_cols=89  Identities=6%  Similarity=-0.003  Sum_probs=60.2

Q ss_pred             hHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCce-ecCHHHHhccCcEEEEcC----C-----------CCCCcCHHHH
Q psy7896         359 VGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYE-VTTMEEAAKEGGIFVTTT----G-----------CKDIIRGEHF  422 (718)
Q Consensus       359 IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~-v~~Leell~~aDiIi~at----g-----------t~~lI~~e~l  422 (718)
                      +.+..+..+..||+++.++-+...........+.. ..+++++++.+|+|.+-.    +           ....++ +.+
T Consensus        21 Va~S~i~~l~~~G~~v~~~~P~~~~p~~~~~~~~~~~~d~~eav~~aDvI~td~w~s~~~~~~~~~~~~~~~~~~~-~~l   99 (161)
T d1js1x2          21 VPNSFAEWMNATDYEFVITHPEGYELDPKFVGNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVG-DRQ   99 (161)
T ss_dssp             HHHHHHHHHHTSSSEEEEECCTTCCCCHHHHTTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBC-HHH
T ss_pred             HHHHHHHHHHHcCCEEEEECCcccCCCHHHhCCceEecCHHHHhCCCcceeeehhhhhcchhHHHHHHHhhhhhhh-HHH
Confidence            78888999999999999986544332222233444 457999999999999731    1           112244 455


Q ss_pred             hcCCCCeEEEEcCCC--CccccHHHHhc
Q psy7896         423 LQMRDDAIVCNIGHF--DCEIQVSWLDK  448 (718)
Q Consensus       423 ~~MK~gAiLIN~GRg--d~Eid~~aL~~  448 (718)
                      ..++++++|.-++-.  +.||+.+-+..
T Consensus       100 ~~~~~dai~MHclPa~Rg~EIs~eV~d~  127 (161)
T d1js1x2         100 MAVTNNAYFMHCLPVRRNMIVTDDVIES  127 (161)
T ss_dssp             HTTSSSCEEECCSCCCBTTTBCHHHHHS
T ss_pred             hhcCCceEEcCCCccccchhcchhhhcC
Confidence            667889999999852  46787665554

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=86.05  E-value=0.16  Score=50.10  Aligned_cols=35  Identities=26%  Similarity=0.391  Sum_probs=31.9

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .++|||+|..|..+|+.|.+.|..|+|.|..+...
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            58999999999999999999999999999877653

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=86.05  E-value=0.23  Score=46.06  Aligned_cols=38  Identities=16%  Similarity=0.170  Sum_probs=34.5

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+.|+++.|+|+|.+|+.+++.|+.+|.+|..+|..+.
T Consensus        41 ~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~   78 (188)
T d2naca1          41 DLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRL   78 (188)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCC
T ss_pred             eccccceeeccccccchhhhhhhhccCceEEEEeeccc
Confidence            47899999999999999999999999999999986544

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=86.00  E-value=0.47  Score=46.33  Aligned_cols=81  Identities=17%  Similarity=0.065  Sum_probs=55.5

Q ss_pred             cccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCc-eecCHHHHhccCcEEEEcCCC--CCCcCHHH
Q psy7896         345 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY-EVTTMEEAAKEGGIFVTTTGC--KDIIRGEH  421 (718)
Q Consensus       345 eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~-~v~~Leell~~aDiIi~atgt--~~lI~~e~  421 (718)
                      ...|++|++||+-+    ..+.++..|+++.++|++|..       |. .-...++++.+||+++.+-.|  .+-++ ..
T Consensus       119 ~~~g~kV~vIG~~P----~v~~l~~~~~~~~VlE~~p~~-------gd~p~~~~~~lLp~aD~viiTGsTlvN~Tl~-~L  186 (251)
T d2h1qa1         119 EVKGKKVGVVGHFP----HLESLLEPICDLSILEWSPEE-------GDYPLPASEFILPECDYVYITCASVVDKTLP-RL  186 (251)
T ss_dssp             TTTTSEEEEESCCT----THHHHHTTTSEEEEEESSCCT-------TCEEGGGHHHHGGGCSEEEEETHHHHHTCHH-HH
T ss_pred             ccCCCEEEEEecch----hHHHHHhcCCcEEEEeCCCCC-------CCCCchHHHHhhhcCCEEEEEechhhcCCHH-HH
Confidence            34799999999865    456677889999999999842       22 223467899999998874211  11122 34


Q ss_pred             HhcCCCCeEEEEcCCC
Q psy7896         422 FLQMRDDAIVCNIGHF  437 (718)
Q Consensus       422 l~~MK~gAiLIN~GRg  437 (718)
                      ++..|+...++=+|-.
T Consensus       187 L~~~~~a~~vvl~GPS  202 (251)
T d2h1qa1         187 LELSRNARRITLVGPG  202 (251)
T ss_dssp             HHHTTTSSEEEEESTT
T ss_pred             HHhCCcCCEEEEECCC
Confidence            6667777777777765

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=85.94  E-value=0.64  Score=41.70  Aligned_cols=59  Identities=22%  Similarity=0.334  Sum_probs=44.3

Q ss_pred             ccch-hhHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhhhhh
Q psy7896         249 YGCR-ESLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINALQA  308 (718)
Q Consensus       249 ~G~~-es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~v~A  308 (718)
                      .+|+ ...+.++.+. ..+..|..|+|+|.|++|...++.++.+|. +|++++.++.+...+
T Consensus         9 l~ca~~Tay~al~~~-~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a   69 (176)
T d2jhfa2           9 IGCGFSTGYGSAVKV-AKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKA   69 (176)
T ss_dssp             GGTHHHHHHHHHHTT-TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHH
T ss_pred             hhcHHHHHHHHHHHh-hCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHH
Confidence            3554 2234454443 337799999999999999999999999996 888888888876433

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=85.86  E-value=0.29  Score=46.28  Aligned_cols=32  Identities=28%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      -|.|||.|-+|..+|..|...|.+|+++|.++
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            38999999999999999999999999999765

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.72  E-value=0.5  Score=42.16  Aligned_cols=49  Identities=16%  Similarity=0.243  Sum_probs=39.5

Q ss_pred             HHHHHhhhcccccCCcEEEEEec-CCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         255 LVDGLKRATDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       255 ~~~~i~r~t~~~~~Gk~vvViGy-G~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      ...++.++  ....|.+++|+|. |++|.-+++.++.+|. .|++++.++.+.
T Consensus        16 a~~al~~~--~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~   66 (170)
T d1jvba2          16 TYRAVRKA--SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAV   66 (170)
T ss_dssp             HHHHHHHT--TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHH
T ss_pred             HHHHHHHh--CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhH
Confidence            44556553  3568999999995 9999999999999995 899888888765

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.69  E-value=0.32  Score=44.70  Aligned_cols=32  Identities=22%  Similarity=0.161  Sum_probs=29.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      -|.|||.|..|...|..|..+|.+|+++|..+
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~   38 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRG   38 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecC
Confidence            38999999999999999999999999998654

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.68  E-value=0.2  Score=49.51  Aligned_cols=37  Identities=19%  Similarity=0.095  Sum_probs=31.5

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcC--CeEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~G--v~VtV~D~dp~r  304 (718)
                      .=|+|+|||+|+.|+.+|..|++.|  ..|+++|.....
T Consensus         3 ~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           3 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            4489999999999999999998777  499999987653

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.66  E-value=0.59  Score=45.14  Aligned_cols=18  Identities=17%  Similarity=0.237  Sum_probs=13.1

Q ss_pred             HHHHhcCCCCeEEEEcCC
Q psy7896         419 GEHFLQMRDDAIVCNIGH  436 (718)
Q Consensus       419 ~e~l~~MK~gAiLIN~GR  436 (718)
                      ...+..||++..+||++.
T Consensus       121 ~~~lp~m~~~g~ivnisS  138 (275)
T d1wmaa1         121 TELLPLIKPQGRVVNVSS  138 (275)
T ss_dssp             HHHGGGEEEEEEEEEECC
T ss_pred             HHHHHHHHhcCCcccccc
Confidence            344667788888888876

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=85.64  E-value=0.32  Score=44.03  Aligned_cols=47  Identities=30%  Similarity=0.397  Sum_probs=38.1

Q ss_pred             HHHhhhcccccCCcEEEEEec-CCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         257 DGLKRATDIMLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       257 ~~i~r~t~~~~~Gk~vvViGy-G~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .++.++  .+..|++|+|.|. |++|.-..+.++.+|++|++++..+.+.
T Consensus        18 ~al~~~--~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~   65 (171)
T d1iz0a2          18 LALKRA--QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKL   65 (171)
T ss_dssp             HHHHHT--TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGS
T ss_pred             HHHHHh--CCCCCCEEEEEeccccchhhhhhhhccccccccccccccccc
Confidence            344442  3568999999995 9999999999999999999888777654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.58  E-value=0.27  Score=44.33  Aligned_cols=39  Identities=26%  Similarity=0.307  Sum_probs=31.5

Q ss_pred             cccCCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCch
Q psy7896         265 IMLAGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  303 (718)
Q Consensus       265 ~~~~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~  303 (718)
                      ++..+++|+|||.|.++.++|..+.++|+ .|+++...+.
T Consensus        41 ~p~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          41 LPSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             CCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cccCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            45567899999999999999999999998 4767654443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.51  E-value=0.19  Score=46.38  Aligned_cols=33  Identities=21%  Similarity=0.135  Sum_probs=30.0

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      -++|||.|+.|+.+|.+|.++|.+|+++|..+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~   39 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCC
Confidence            378999999999999999999999999997654

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=85.49  E-value=0.34  Score=46.84  Aligned_cols=41  Identities=27%  Similarity=0.456  Sum_probs=37.0

Q ss_pred             cccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         265 IMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       265 ~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      ..+.|++++|-|+|.+|..+|+.|.+.|.+|+++|.++...
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~   75 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAV   75 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHH
Confidence            35899999999999999999999999999999998876643

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=85.39  E-value=0.18  Score=47.97  Aligned_cols=34  Identities=26%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      .|+|||.|+.|+.+|..|.++|.+|+++|..+..
T Consensus         6 DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKI   39 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4899999999999999999999999999987654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.39  E-value=0.18  Score=46.59  Aligned_cols=27  Identities=85%  Similarity=1.376  Sum_probs=24.5

Q ss_pred             cceecCCCCeEEEecCCccccccccCC
Q psy7896         612 DRYTLPNGNHIILLAEGRLVNLGCAMG  638 (718)
Q Consensus       612 ~~~~~~~~~~~i~ddggdl~~~~~~~~  638 (718)
                      +.+.+|||..+++..+|+|+||+||+|
T Consensus       137 ~~y~l~dG~~i~lLaeGrlvNL~~a~G  163 (163)
T d1li4a1         137 DRYRLKNGRRIILLAEGRLVNLGCAMG  163 (163)
T ss_dssp             EEEECTTSCEEEEEGGGSCHHHHSSCC
T ss_pred             eEEEeCCCCEEEEEeCCCeEeecCCCC
Confidence            356789999999999999999999987

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.34  E-value=0.24  Score=45.95  Aligned_cols=38  Identities=29%  Similarity=0.400  Sum_probs=34.2

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+.|+++.|+|+|.+|+.+|+.|+.+|.+|..+|....
T Consensus        41 ~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~   78 (184)
T d1ygya1          41 EIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVS   78 (184)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             cccceeeeeccccchhHHHHHHhhhccceEEeecCCCC
Confidence            46899999999999999999999999999999886443

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=85.20  E-value=0.37  Score=47.49  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=28.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC--CEEEEEecCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG--SRVIVTEIDP  381 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG--a~Viv~d~dp  381 (718)
                      |+|+|||.|..|..+|..|+..|  .+|+++|...
T Consensus         5 KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~   39 (335)
T d2gv8a1           5 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRG   39 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSS
T ss_pred             CeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCC
Confidence            78999999999999999886555  5999998765

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=85.20  E-value=0.18  Score=46.95  Aligned_cols=32  Identities=22%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ++|||.||.|+.+|..++++|.+|.++|..+.
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~~   37 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTP   37 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccCC
Confidence            78999999999999999999999999996553

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.17  E-value=0.35  Score=44.08  Aligned_cols=32  Identities=25%  Similarity=0.290  Sum_probs=29.6

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      -|.|||.|+.|...|..++.+|.+|+++|..+
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            37899999999999999999999999998765

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=85.15  E-value=0.57  Score=41.88  Aligned_cols=65  Identities=18%  Similarity=0.257  Sum_probs=41.5

Q ss_pred             cEEEEEe-cChhHHHHHHHHHh---CCC----EEEEEecCCccH-HHHh----hcC-c-------eecCHHHHhccCcEE
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLRL---FGS----RVIVTEIDPINA-LQAS----MEG-Y-------EVTTMEEAAKEGGIF  407 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~~---fGa----~Viv~d~dp~~a-l~a~----~~G-~-------~v~~Leell~~aDiI  407 (718)
                      .+|.||| .|+||+.+|-.+..   ||.    ....+|.+.... .++.    .+. +       ...+..+.++++|+|
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvV   83 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVA   83 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEE
Confidence            4899999 59999999998864   332    355566655322 1111    111 1       123577889999999


Q ss_pred             EEcCCC
Q psy7896         408 VTTTGC  413 (718)
Q Consensus       408 i~atgt  413 (718)
                      +++.|.
T Consensus        84 Vitag~   89 (154)
T d5mdha1          84 ILVGSM   89 (154)
T ss_dssp             EECCSC
T ss_pred             EEeccc
Confidence            987654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.14  E-value=0.39  Score=41.95  Aligned_cols=36  Identities=28%  Similarity=0.243  Sum_probs=30.4

Q ss_pred             cCcEEEEEecChhHHHHHHHH----HhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSL----RLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l----~~fGa~Viv~d~dp~  382 (718)
                      .+|++.|||.|.||..+|..+    +.+|.+|++++..+.
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            478999999999999988766    578999999887553

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=85.07  E-value=0.2  Score=45.79  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=30.0

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      -++|||.||.|+++|.++++.|.+|+++|....
T Consensus         5 DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~~   37 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNL   37 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEecCCC
Confidence            378999999999999999999999999997654

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=0.52  Score=42.23  Aligned_cols=49  Identities=16%  Similarity=0.078  Sum_probs=37.9

Q ss_pred             HHHHhhhcccccCCcEEEEEecCC-CChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         256 VDGLKRATDIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       256 ~~~i~r~t~~~~~Gk~vvViGyG~-vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      +.++.+. ..+..|++|+|.|.+. +|..+++.++..|++|++++.++.+.
T Consensus        17 ~~al~~~-~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~   66 (179)
T d1qora2          17 YYLLRKT-YEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKA   66 (179)
T ss_dssp             HHHHHTT-SCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHH
T ss_pred             HHHHHHH-hCCCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHH
Confidence            3344443 2356799999996555 99999999999999999998887754

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=84.97  E-value=0.24  Score=43.73  Aligned_cols=43  Identities=21%  Similarity=0.274  Sum_probs=36.8

Q ss_pred             cCCcEEEEEe-cCCCChhHHHHHHhcCCeEEEeecCchhhhhhh
Q psy7896         267 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS  309 (718)
Q Consensus       267 ~~Gk~vvViG-yG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~Av  309 (718)
                      ..-++|.||| .|..|..+|+.|++.|+.|+++|.++.......
T Consensus         7 ~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~~~~~~   50 (152)
T d2pv7a2           7 SDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWAVAESI   50 (152)
T ss_dssp             TTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGGGHHHH
T ss_pred             CCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccccccchh
Confidence            4567999999 899999999999999999999998877654433

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.97  E-value=0.32  Score=45.23  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=31.8

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      +|.|+|.|.+|...|..+...|..|+.+|.++.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~   35 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTK   35 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHH
Confidence            6899999999999999999999999999998764

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.92  E-value=0.46  Score=41.66  Aligned_cols=28  Identities=18%  Similarity=0.389  Sum_probs=25.1

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCCEEEE
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIV  376 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv  376 (718)
                      ++|+|+|+ |+.|+.+++.+...|.++..
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~   29 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL   29 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence            47999997 99999999999999998765

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.89  E-value=0.15  Score=45.17  Aligned_cols=33  Identities=24%  Similarity=0.299  Sum_probs=28.8

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEE
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVI  375 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Vi  375 (718)
                      +....||+|.|||.|++|..+|+.+..+|+++.
T Consensus        24 ~~~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~   56 (162)
T d1ps9a2          24 DKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTS   56 (162)
T ss_dssp             SCCCCCSEEEEECCHHHHHHHHHHHTCCSSCGG
T ss_pred             CccccCCceEEEcCchhHHHHHHHHHHcCCccc
Confidence            344579999999999999999999999998643

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=84.88  E-value=0.4  Score=42.05  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=27.8

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +|.|||.|.+|..+|..|+. +.+|+++++.|.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            79999999999999999975 679999986553

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=84.88  E-value=0.38  Score=43.75  Aligned_cols=33  Identities=15%  Similarity=0.110  Sum_probs=28.6

Q ss_pred             cEEEEEecChhHHHHHHHHHhC--CCEEEEEecCC
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLF--GSRVIVTEIDP  381 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~f--Ga~Viv~d~dp  381 (718)
                      ++|.|||.|.+|..+|..|+.+  +.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            4799999999999999999887  45899988655

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=84.80  E-value=0.27  Score=45.57  Aligned_cols=38  Identities=24%  Similarity=0.253  Sum_probs=35.4

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .-.+++|+|.|.+|+..++.++++|..|+++|.++.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l   68 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERL   68 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHH
Confidence            45799999999999999999999999999999998875

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.71  E-value=0.33  Score=45.06  Aligned_cols=31  Identities=23%  Similarity=0.379  Sum_probs=29.1

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|||.|+.|...|..+..+|.+|.++|..+
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999999999998654

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=84.64  E-value=0.36  Score=40.99  Aligned_cols=36  Identities=11%  Similarity=0.132  Sum_probs=29.8

Q ss_pred             cCcEEEEEecChhHHHHHHHHHhCC---CEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGDVGKGCAQSLRLFG---SRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~IG~~vA~~l~~fG---a~Viv~d~dp~  382 (718)
                      ..+++.|||.|.||..+|..+.++|   .+|+++++.+.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~   57 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEM   57 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSS
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccch
Confidence            4689999999999999998877765   47999886553

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=84.56  E-value=0.21  Score=45.57  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=28.8

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCc
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  302 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp  302 (718)
                      ++|||.||.|+.+|.+|.+.|.+|.++|..+
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            7899999999999999999999999999654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=84.51  E-value=0.26  Score=41.75  Aligned_cols=37  Identities=22%  Similarity=0.207  Sum_probs=30.6

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhc---CCeEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLF---GSRVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~---Gv~VtV~D~dp~r  304 (718)
                      ..++++|+|.|++|..+|..+.++   |..|++++..+..
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            358999999999999999776654   8899999876653

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=84.43  E-value=0.21  Score=47.62  Aligned_cols=32  Identities=19%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ++|||.|.+|.++|+.|.++|.+|+++|..+.
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~~   37 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDP   37 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSCS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999997543

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=84.39  E-value=0.31  Score=45.71  Aligned_cols=42  Identities=19%  Similarity=0.271  Sum_probs=36.9

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQAS  309 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~Av  309 (718)
                      .-.+++|+|.|.+|...++.+.++|..|+++|.++.+..+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~   69 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVE   69 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHH
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHH
Confidence            456999999999999999999999999999999988764433

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.35  E-value=0.48  Score=44.85  Aligned_cols=36  Identities=19%  Similarity=0.254  Sum_probs=32.0

Q ss_pred             cCcEEEEEecCh-hHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         347 AGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       347 ~GktVGIIG~G~-IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      +||+|.|.|.+. ||+++|+.|...|++|.++|+.+.
T Consensus         1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            589999999955 999999999999999999887553

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=84.33  E-value=0.46  Score=42.45  Aligned_cols=41  Identities=20%  Similarity=0.258  Sum_probs=35.4

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASME  311 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~Avae  311 (718)
                      ||.+||.|..|..+|..|.+.|..|+++|.++.........
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~   42 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA   42 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHh
Confidence            68999999999999999999999999999988876444333

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=84.31  E-value=0.19  Score=48.83  Aligned_cols=35  Identities=17%  Similarity=0.166  Sum_probs=30.0

Q ss_pred             cEEEEEecCCCChhHHHHHH-----hcCCeEEEeecCchh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLR-----LFGSRVIVTEIDPIN  304 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLr-----a~Gv~VtV~D~dp~r  304 (718)
                      --|+|||+|++|+.+|..|.     +.|++|+|+|..+..
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            45899999999999998884     679999999977643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.27  E-value=1.5  Score=41.87  Aligned_cols=40  Identities=18%  Similarity=0.425  Sum_probs=34.6

Q ss_pred             ccCCcEEEEEecCC-CChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         266 MLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       266 ~~~Gk~vvViGyG~-vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .+.||.++|.|++. +|+.+|..+.+.|.+|.+++.++.+.
T Consensus         4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l   44 (244)
T d1yb1a_           4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGL   44 (244)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            47899999998655 99999999999999999998877653

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.23  E-value=0.4  Score=44.56  Aligned_cols=31  Identities=29%  Similarity=0.198  Sum_probs=29.3

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|||.|+.|...|..|..+|.+|+++|..+
T Consensus         9 viIIG~GPaGlsaA~~aa~~G~~V~viE~~~   39 (229)
T d1ojta1           9 VVVLGGGPGGYSAAFAAADEGLKVAIVERYK   39 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            8999999999999999999999999998765

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=84.03  E-value=1.1  Score=40.03  Aligned_cols=62  Identities=13%  Similarity=0.081  Sum_probs=40.1

Q ss_pred             cEEEEEe-cChhHHHHHHHHHhCCCEEEE--EecCCccHHHHhhcCce--------ecCHHHHhccCcEEEEcC
Q psy7896         349 KVAVVAG-YGDVGKGCAQSLRLFGSRVIV--TEIDPINALQASMEGYE--------VTTMEEAAKEGGIFVTTT  411 (718)
Q Consensus       349 ktVGIIG-~G~IG~~vA~~l~~fGa~Viv--~d~dp~~al~a~~~G~~--------v~~Leell~~aDiIi~at  411 (718)
                      +||.|.| .|.||+.+++.|...|.+|.+  ..++|.... ....+..        ..++.++++.+|.++.+.
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a   76 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKE-KIGGEADVFIGDITDADSINPAFQGIDALVILT   76 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHH-HTTCCTTEEECCTTSHHHHHHHHTTCSEEEECC
T ss_pred             CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHH-hccCCcEEEEeeeccccccccccccceeeEEEE
Confidence            6899999 699999999999988976544  445553321 1112221        123456677788877653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=83.99  E-value=1.3  Score=42.54  Aligned_cols=38  Identities=26%  Similarity=0.467  Sum_probs=32.8

Q ss_pred             cCCcEEEEEec-CCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         267 LAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvViGy-G~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      +.||.++|.|. +.+|+.+|..|.+.|.+|++++.++..
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            57999999985 559999999999999999998876654

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.99  E-value=0.27  Score=45.25  Aligned_cols=34  Identities=24%  Similarity=0.107  Sum_probs=30.0

Q ss_pred             cEEEEEecChhHHHHHHHHHhCC-------CEEEEEecCCc
Q psy7896         349 KVAVVAGYGDVGKGCAQSLRLFG-------SRVIVTEIDPI  382 (718)
Q Consensus       349 ktVGIIG~G~IG~~vA~~l~~fG-------a~Viv~d~dp~  382 (718)
                      .+|+|||.|.-|...|..|...|       .+|+++|..|.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCC
Confidence            58999999999999999997766       68999998774

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=83.91  E-value=0.4  Score=44.59  Aligned_cols=32  Identities=22%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      |.|||.|..|...|..|...|.+|+++|..+.
T Consensus         5 ViIIGaG~aGl~aA~~la~~G~~V~liEk~~~   36 (251)
T d2i0za1           5 VIVIGGGPSGLMAAIGAAEEGANVLLLDKGNK   36 (251)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            89999999999999999999999999997654

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=83.87  E-value=0.53  Score=37.89  Aligned_cols=39  Identities=23%  Similarity=0.248  Sum_probs=33.5

Q ss_pred             cccCcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCcc
Q psy7896         345 MLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN  383 (718)
Q Consensus       345 eL~GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~  383 (718)
                      .-+|.+|.|.|. |.+|....+.++.+|++|+++..++.+
T Consensus        29 ~~~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~~k   68 (77)
T d1o8ca2          29 RPQDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGREST   68 (77)
T ss_dssp             CGGGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGG
T ss_pred             ccCCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCHHH
Confidence            346889999887 999999999999999999998766644

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=83.83  E-value=0.64  Score=40.24  Aligned_cols=39  Identities=18%  Similarity=0.128  Sum_probs=34.6

Q ss_pred             cccccCcEEEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         343 DIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       343 g~eL~GktVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      +.-.+||+|.|||.|+.+..-|..|..+..+|+++.+.+
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~   60 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD   60 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecc
Confidence            455689999999999999999999999999999986544

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=83.77  E-value=2  Score=40.09  Aligned_cols=83  Identities=11%  Similarity=0.090  Sum_probs=64.0

Q ss_pred             HHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCCCeEEEEcCCCCccccH
Q psy7896         364 AQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRDDAIVCNIGHFDCEIQV  443 (718)
Q Consensus       364 A~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~gAiLIN~GRgd~Eid~  443 (718)
                      .+.|+..|.+++++.......          ..+++-+.++|++++.+=...-|+++.+++.++=-+++..|.|-+-+|+
T Consensus        60 r~~Le~~GhelV~~sd~~~~~----------~el~k~l~DADivI~~pf~~~~lt~e~i~~ap~LKlI~~~g~G~D~VDl  129 (186)
T d2naca2          60 RKYLESNGHTLVVTSDKDGPD----------SVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLALTAGIGSDHVDL  129 (186)
T ss_dssp             HHHHHHTTCEEEEESCCSSTT----------SHHHHHHTTCSEEEEBTTBCCCBCHHHHHHCTTCCEEEESSSCCTTBCH
T ss_pred             HHHHHHCCCEEEEecCCCCCh----------HHHHhhcccCCEEEEecccccccCHHHHhcCccceEEEEeccCCccccH
Confidence            378899999998874332211          1366778899999987533346999999999999999999998778999


Q ss_pred             HHHhccccceeee
Q psy7896         444 SWLDKNAVEKVNV  456 (718)
Q Consensus       444 ~aL~~~~l~~~~v  456 (718)
                      ++..+.++.+..+
T Consensus       130 ~aa~e~gI~V~n~  142 (186)
T d2naca2         130 QSAIDRNVTVAEV  142 (186)
T ss_dssp             HHHHHTTCEEEEC
T ss_pred             HHHHhCCCEEEEC
Confidence            9999887766554

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.73  E-value=0.52  Score=42.18  Aligned_cols=43  Identities=21%  Similarity=0.170  Sum_probs=36.7

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEG  312 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeG  312 (718)
                      ++|.+||.|..|..+|..|.+.|..|+++|.++.........+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~   44 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAG   44 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTT
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhh
Confidence            4799999999999999999999999999999888764444443

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=83.72  E-value=0.23  Score=47.98  Aligned_cols=36  Identities=22%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             CcEEEEEecCCCChhHHHHHHh-cCCeEEEeecCchh
Q psy7896         269 GKVAVVAGYGDVGKGCAQSLRL-FGSRVIVTEIDPIN  304 (718)
Q Consensus       269 Gk~vvViGyG~vG~~~A~aLra-~Gv~VtV~D~dp~r  304 (718)
                      -.-|+|||+|+.|+.+|..|.+ .|++|+++|..+..
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            4569999999999999988866 59999999987653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=83.67  E-value=1.7  Score=41.18  Aligned_cols=38  Identities=18%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             cCCcEEEEEecCC-CChhHHHHHHhcCCeEEEeecCchh
Q psy7896         267 LAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       267 ~~Gk~vvViGyG~-vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      +.||.++|.|.+. +|+.+|+.|.+.|++|++.+.+...
T Consensus         3 l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL   41 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            6899999998655 9999999999999999988766553

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=83.59  E-value=0.43  Score=43.47  Aligned_cols=51  Identities=18%  Similarity=0.260  Sum_probs=41.3

Q ss_pred             hHHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         254 SLVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       254 s~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      .+++.+.. .+....|++++|+|+|.++++++++|...+.+|+++..++.++
T Consensus         4 Gf~~~l~~-~~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a   54 (171)
T d1p77a1           4 GLVTDLQR-LNWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKT   54 (171)
T ss_dssp             HHHHHHHH-TTCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHH
T ss_pred             HHHHHHHH-cCCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHH
Confidence            35555654 3567899999999999999999999999888999988776653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=83.49  E-value=0.21  Score=46.06  Aligned_cols=69  Identities=30%  Similarity=0.472  Sum_probs=50.2

Q ss_pred             cccccccchhhhhhhHHHHhcCCccceEEEecCCccccccccccc-chhhHHHHHhhhcccccCCcEEEEEecCCCChhH
Q psy7896         206 IRGISEETTTGVHNLYKMFKENKLGVPAINVNDSVTKSKFDNLYG-CRESLVDGLKRATDIMLAGKVAVVAGYGDVGKGC  284 (718)
Q Consensus       206 ~~Gv~E~T~sG~~rl~~~~~~g~l~~Pv~~v~ds~~K~~fd~~~G-~~es~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~  284 (718)
                      .+|+-|.+-.|+.|...++-.|+- +-|             --|| |+.++    ++                      .
T Consensus         2 ~yg~g~S~~d~i~r~t~~~laGk~-vvV-------------~GYG~vGrG~----A~----------------------~   41 (163)
T d1v8ba1           2 VYGCRHSLPDGLMRATDFLISGKI-VVI-------------CGYGDVGKGC----AS----------------------S   41 (163)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCTTSE-EEE-------------ECCSHHHHHH----HH----------------------H
T ss_pred             ccccchhHHHHHHHHhCceecCCE-EEE-------------ecccccchhH----HH----------------------H
Confidence            367788888999998876655552 111             2466 55433    32                      1


Q ss_pred             HHHHHhcCCeEEEeecCchhhhhhhhhhhhhhH
Q psy7896         285 AQSLRLFGSRVIVTEIDPINALQASMEGYELDE  317 (718)
Q Consensus       285 A~aLra~Gv~VtV~D~dp~r~v~AvaeGf~L~r  317 (718)
                      +   |.+|.+|+|+|.||.++.+|.++||++..
T Consensus        42 ~---rg~Ga~V~V~E~DPi~alqA~mdGf~v~~   71 (163)
T d1v8ba1          42 M---KGLGARVYITEIDPICAIQAVMEGFNVVT   71 (163)
T ss_dssp             H---HHHTCEEEEECSCHHHHHHHHTTTCEECC
T ss_pred             H---HhCCCEEEEEecCchhhHHHHhcCCccCc
Confidence            2   67899999999999999999999999863

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=83.43  E-value=0.25  Score=48.95  Aligned_cols=37  Identities=27%  Similarity=0.152  Sum_probs=33.1

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      ..-.|+|||+|+.|+.+|..|++.|+.|+|+|..+..
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDV   42 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCc
Confidence            4456999999999999999999999999999987654

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=0.43  Score=45.32  Aligned_cols=31  Identities=35%  Similarity=0.350  Sum_probs=29.2

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|||.|..|...|..|+..|.+|+++|..+
T Consensus         2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence            7899999999999999999999999999755

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.09  E-value=1.1  Score=42.89  Aligned_cols=39  Identities=31%  Similarity=0.520  Sum_probs=33.2

Q ss_pred             ccCCcEEEEEec-CCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         266 MLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       266 ~~~Gk~vvViGy-G~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      .+.||.++|.|. +.+|+.+|..|.+.|.+|++++.++..
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence            378999999985 569999999999999999998876553

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=83.06  E-value=0.64  Score=41.98  Aligned_cols=38  Identities=13%  Similarity=0.222  Sum_probs=33.7

Q ss_pred             CCcEEEEEecCCCChhHHHHHHhcCC-eEEEeecCchhh
Q psy7896         268 AGKVAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPINA  305 (718)
Q Consensus       268 ~Gk~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~r~  305 (718)
                      .+++|+|+|+|..+++++++|...|+ .++++..++.+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka   54 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTG   54 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHH
Confidence            68999999999999999999999998 788887776653

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=83.06  E-value=1  Score=43.22  Aligned_cols=38  Identities=37%  Similarity=0.588  Sum_probs=32.0

Q ss_pred             ccCCcEEEEEec-CCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViGy-G~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      |+.||.++|.|. +.+|+.+|..|.+.|.+|++.+.+..
T Consensus         1 ~L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~   39 (260)
T d1x1ta1           1 MLKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDA   39 (260)
T ss_dssp             CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCH
T ss_pred             CCCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            468999999875 45999999999999999999887644

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.05  E-value=0.28  Score=45.04  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=29.5

Q ss_pred             EEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         272 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       272 vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ++|||.|+.|+.+|..+.+.|.+|+++|..+.
T Consensus         6 viIIG~GpaG~~aA~~aar~G~kV~vIEk~~~   37 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAELGARAAVVESHKL   37 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSCT
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEeccCC
Confidence            78999999999999999999999999997654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=82.61  E-value=0.26  Score=47.52  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=29.9

Q ss_pred             EEEEEecCCCChhHHHHHHhcCC-eEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv-~VtV~D~dp~  303 (718)
                      +|+|||.|.+|..+|+.|.++|. .|+|.|.++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~   36 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   36 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            68999999999999999999996 6999998754

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=82.61  E-value=0.58  Score=45.78  Aligned_cols=37  Identities=24%  Similarity=0.205  Sum_probs=33.2

Q ss_pred             ccCcEEEEEe-cChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         346 LAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       346 L~GktVGIIG-~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .+||+|.|.| .|-||+.+++.|...|.+|+++++++.
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            4789999999 678999999999999999999987654

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=82.12  E-value=0.29  Score=42.97  Aligned_cols=32  Identities=28%  Similarity=0.388  Sum_probs=27.8

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      ||+|||.|++|..+|..|++ +..|++++..+.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            79999999999999998865 779999986554

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=81.91  E-value=0.42  Score=42.23  Aligned_cols=43  Identities=19%  Similarity=0.187  Sum_probs=35.7

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchhhhhhhhhhh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGY  313 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~v~AvaeGf  313 (718)
                      ||.|||.|..|..+|+.|++.|+.|++++..+.........++
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~   44 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTV   44 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHH
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcc
Confidence            6899999999999999999999999999877766554444443

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=81.86  E-value=0.91  Score=42.51  Aligned_cols=56  Identities=14%  Similarity=0.298  Sum_probs=40.3

Q ss_pred             cEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhc--cCcEEEEcC
Q psy7896         349 KVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAK--EGGIFVTTT  411 (718)
Q Consensus       349 ktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~--~aDiIi~at  411 (718)
                      ++|.|.|. |-||+.+++.|...|.+|+..++.....       .....++++++  ..|+|+-+.
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~D~-------~d~~~~~~~l~~~~~d~vih~a   60 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDLDI-------TNVLAVNKFFNEKKPNVVINCA   60 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTCCT-------TCHHHHHHHHHHHCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhccC-------CCHHHHHHHHHHcCCCEEEeec
Confidence            57999997 9999999999999999999998754210       11123455655  458777543

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=81.31  E-value=0.49  Score=42.27  Aligned_cols=40  Identities=20%  Similarity=0.297  Sum_probs=34.6

Q ss_pred             ccCCcEEEEEecCCCChhHHHHHHhcCC--eEEEeecCchhh
Q psy7896         266 MLAGKVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINA  305 (718)
Q Consensus       266 ~~~Gk~vvViGyG~vG~~~A~aLra~Gv--~VtV~D~dp~r~  305 (718)
                      |...+||+|||.|.+|..+|+.|..+|.  .+..+|.++.++
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~   43 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT   43 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh
Confidence            3456799999999999999999999985  799999888654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=81.27  E-value=0.48  Score=43.02  Aligned_cols=49  Identities=18%  Similarity=0.113  Sum_probs=38.2

Q ss_pred             HHHHHhhhcccccCCcEEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         255 LVDGLKRATDIMLAGKVAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       255 ~~~~i~r~t~~~~~Gk~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      ++..+.+. +..+.||+++|+|+|.++++++++|.+.| .|+++..++.++
T Consensus         5 ~~~~l~~~-~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka   53 (177)
T d1nvta1           5 ARMALEEE-IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKA   53 (177)
T ss_dssp             HHHHHHHH-HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHH
T ss_pred             HHHHHHHh-CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHH
Confidence            34444432 33479999999999999999999998877 888888777764

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=81.03  E-value=0.33  Score=46.95  Aligned_cols=34  Identities=35%  Similarity=0.446  Sum_probs=31.3

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPIN  304 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r  304 (718)
                      -|+|||.|..|+.+|..|.+.|.+|+++|..+..
T Consensus        18 DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDSGAKVILIEKEPVI   51 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence            4899999999999999999999999999987754

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=80.92  E-value=0.56  Score=45.00  Aligned_cols=33  Identities=30%  Similarity=0.401  Sum_probs=29.4

Q ss_pred             EEEEEecChhHHHHHHHHHhCCC-EEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGS-RVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa-~Viv~d~dp~  382 (718)
                      .|.|||.|-+|..+|..|...|. +|+++|+++.
T Consensus         3 dViIIGaGi~G~s~A~~La~~G~~~V~liE~~~~   36 (305)
T d1pj5a2           3 RIVIIGAGIVGTNLADELVTRGWNNITVLDQGPL   36 (305)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEECSSCT
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            58999999999999999999996 6999988653

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.85  E-value=0.63  Score=44.25  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=29.2

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|||.|..|...|.+|..+|.+|.++|.++
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~~~   34 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEKSR   34 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            7899999999999999999999999999765

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=80.84  E-value=0.6  Score=44.22  Aligned_cols=31  Identities=19%  Similarity=0.359  Sum_probs=28.9

Q ss_pred             EEEEecChhHHHHHHHHHhCCCEEEEEecCC
Q psy7896         351 AVVAGYGDVGKGCAQSLRLFGSRVIVTEIDP  381 (718)
Q Consensus       351 VGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp  381 (718)
                      |.|||.|-+|..+|..|...|.+|+++|..+
T Consensus         6 vvIIGaGi~Gls~A~~La~~G~~V~viE~~~   36 (281)
T d2gf3a1           6 VIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (281)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             EEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            8999999999999999999999999998753

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=80.64  E-value=4.4  Score=34.83  Aligned_cols=91  Identities=14%  Similarity=0.015  Sum_probs=60.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCccHHHHhhcCceecCHHHHhccCcEEEEcCCCCCCcCHHHHhcCCC-C
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINALQASMEGYEVTTMEEAAKEGGIFVTTTGCKDIIRGEHFLQMRD-D  428 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~~al~a~~~G~~v~~Leell~~aDiIi~atgt~~lI~~e~l~~MK~-g  428 (718)
                      +|.|  .+++-..+..+++..+ +|+.+..++..         ...++-+.++.+|.+++..++  -|+++.|+++++ =
T Consensus         3 kVli--t~~~~~~~~~~l~~~~-~v~~~~~~~~~---------s~~el~~~~~~~d~ii~~~~~--~i~~~~l~~~~~~L   68 (129)
T d1gdha2           3 KILI--TWPLPEAAMARARESY-DVIAHGDDPKI---------TIDEMIETAKSVDALLITLNE--KCRKEVIDRIPENI   68 (129)
T ss_dssp             EEEE--SSCCCHHHHHHHHTTS-EEEECCSTTCC---------CHHHHHHHHTTCSEEEEETTS--CBCHHHHHHSCTTC
T ss_pred             EEEE--eCCCCHHHHHHHHcCC-cEEEeCCCCCC---------CHHHHHHHhcCCCEEEEcCCc--hhhhHHHhhhhhcc
Confidence            4444  3556677777887654 66665433211         111245567889988765444  399999999864 5


Q ss_pred             eEEEEcCCCCccccHHHHhcccccee
Q psy7896         429 AIVCNIGHFDCEIQVSWLDKNAVEKV  454 (718)
Q Consensus       429 AiLIN~GRgd~Eid~~aL~~~~l~~~  454 (718)
                      -++.+.|-|-+-+|++++.+.++.+.
T Consensus        69 K~I~~~gvG~d~ID~~~a~~~gI~V~   94 (129)
T d1gdha2          69 KCISTYSIGFDHIDLDACKARGIKVG   94 (129)
T ss_dssp             CEEEEESSCCTTBCHHHHHHTTCEEE
T ss_pred             eeeeecccCCccccHHHHHhCCCEEE
Confidence            57788888867799999998776544

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.57  E-value=0.93  Score=41.75  Aligned_cols=40  Identities=28%  Similarity=0.329  Sum_probs=34.8

Q ss_pred             ccccCCcEEEEEecCC-CChhHHHHHHhcCCeEEEeecCch
Q psy7896         264 DIMLAGKVAVVAGYGD-VGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       264 ~~~~~Gk~vvViGyG~-vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      +..+.||+++|||.+. +|+-+|..|..+|..|++++....
T Consensus        24 g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~   64 (171)
T d1edza1          24 GNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNI   64 (171)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEE
T ss_pred             cCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccc
Confidence            4478999999999887 699999999999999999876544

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=80.52  E-value=0.47  Score=41.76  Aligned_cols=35  Identities=20%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      +++|+|+|..|..+++.|.+.|..|+++|.+|...
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~   39 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDD   39 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhH
Confidence            68999999999999999999999999999988653

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=80.50  E-value=0.6  Score=44.33  Aligned_cols=43  Identities=26%  Similarity=0.421  Sum_probs=35.4

Q ss_pred             ccCCcEEEEEec-CC--CChhHHHHHHhcCCeEEEeecCchhhhhh
Q psy7896         266 MLAGKVAVVAGY-GD--VGKGCAQSLRLFGSRVIVTEIDPINALQA  308 (718)
Q Consensus       266 ~~~Gk~vvViGy-G~--vG~~~A~aLra~Gv~VtV~D~dp~r~v~A  308 (718)
                      ++.||+++|.|+ |.  +|+.+|+.|.+.|++|++++.+..+....
T Consensus         3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~~~~~   48 (268)
T d2h7ma1           3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRLIQR   48 (268)
T ss_dssp             TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHHHHHH
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHHHHHH
Confidence            578999999995 43  88888999999999999988777655443

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.49  E-value=0.51  Score=41.16  Aligned_cols=35  Identities=29%  Similarity=0.444  Sum_probs=31.7

Q ss_pred             EEEEE-ecCCCChhHHHHHHhcCCeEEEeecCchhh
Q psy7896         271 VAVVA-GYGDVGKGCAQSLRLFGSRVIVTEIDPINA  305 (718)
Q Consensus       271 ~vvVi-GyG~vG~~~A~aLra~Gv~VtV~D~dp~r~  305 (718)
                      ||.|+ |.|.+|..+|..|...|++|++...++.+.
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e~~   37 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKA   37 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence            67888 779999999999999999999999988765

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=80.44  E-value=2  Score=41.29  Aligned_cols=38  Identities=29%  Similarity=0.334  Sum_probs=32.3

Q ss_pred             ccCCcEEEEEe-cCCCChhHHHHHHhcCCeEEEeecCch
Q psy7896         266 MLAGKVAVVAG-YGDVGKGCAQSLRLFGSRVIVTEIDPI  303 (718)
Q Consensus       266 ~~~Gk~vvViG-yG~vG~~~A~aLra~Gv~VtV~D~dp~  303 (718)
                      .+.||.++|.| .+.+|+.+|+.|.+.|++|.+.+.+..
T Consensus         4 dL~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~   42 (261)
T d1geea_           4 DLEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKE   42 (261)
T ss_dssp             GGTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcH
Confidence            36899999997 567999999999999999998876654

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.36  E-value=0.61  Score=45.63  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=30.5

Q ss_pred             EEEEEecChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|.|||.|..|..+|+.|...|.+|+++|.++.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~   35 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNH   35 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCC
Confidence            589999999999999999999999999998765

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=80.18  E-value=0.61  Score=43.60  Aligned_cols=35  Identities=14%  Similarity=0.213  Sum_probs=31.2

Q ss_pred             CcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         348 GKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       348 GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      -|+|.|+|. |.||+.+++.|...|.+|++.++++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCc
Confidence            378999996 99999999999999999999987664

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=80.17  E-value=0.56  Score=41.71  Aligned_cols=43  Identities=28%  Similarity=0.371  Sum_probs=34.5

Q ss_pred             cEEEEEecCCCChhHHHHHHhcCC--eEEEeecCchhhhhhhhhh
Q psy7896         270 KVAVVAGYGDVGKGCAQSLRLFGS--RVIVTEIDPINALQASMEG  312 (718)
Q Consensus       270 k~vvViGyG~vG~~~A~aLra~Gv--~VtV~D~dp~r~v~AvaeG  312 (718)
                      |+|.|||.|.+|.++|+.|++.|.  .|+.+|.++.....+...+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~   46 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG   46 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh
Confidence            479999999999999999999995  7777888877654444443

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.16  E-value=0.67  Score=43.04  Aligned_cols=35  Identities=29%  Similarity=0.459  Sum_probs=30.4

Q ss_pred             CcEEEEEec-ChhHHHHHHHHHhCCCEEEEEecCCc
Q psy7896         348 GKVAVVAGY-GDVGKGCAQSLRLFGSRVIVTEIDPI  382 (718)
Q Consensus       348 GktVGIIG~-G~IG~~vA~~l~~fGa~Viv~d~dp~  382 (718)
                      .|++.|.|. +.||+++|+.|...|++|+++++++.
T Consensus         1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            478888887 45999999999999999999987653

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.14  E-value=0.12  Score=47.53  Aligned_cols=29  Identities=24%  Similarity=0.181  Sum_probs=25.3

Q ss_pred             EEEEEecCCCChhHHHHHHhcCCeEEEee
Q psy7896         271 VAVVAGYGDVGKGCAQSLRLFGSRVIVTE  299 (718)
Q Consensus       271 ~vvViGyG~vG~~~A~aLra~Gv~VtV~D  299 (718)
                      +|+|||+|.+|++.|+.|.+.|.+|++.+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e   30 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPL   30 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEe
Confidence            69999999999999999999998665443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=80.13  E-value=0.61  Score=45.03  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=29.1

Q ss_pred             EEEEEecChhHHHHHHHHH-----hCCCEEEEEecCCc
Q psy7896         350 VAVVAGYGDVGKGCAQSLR-----LFGSRVIVTEIDPI  382 (718)
Q Consensus       350 tVGIIG~G~IG~~vA~~l~-----~fGa~Viv~d~dp~  382 (718)
                      -|.|||.|.+|..+|..|.     ..|.+|+++|+.|.
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~   46 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST   46 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCC
Confidence            4899999999999999984     57999999998764