Psyllid ID: psy78

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520---
Protein Sequence
MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHEEcccHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHHcccccccccccccccccccccccccHHHcccccccEEEccccccHHHHHHHHHHHHHHccccEEEEcccEEEEcccccEEEEEEEEEEEEccccEEEEEEccccccEEEEEEccccHHHHHccccccccHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHcHHHHHcccccccEEEEEcccccccHHHHHHHHHccccEEEEEccHHHHHHHHHHHccccccccEEEEEEccccccccccEEEEEEccccccccccccccccccHHHHccccccEEEEEEHHHHHHHHHHcccHHHHHHcccEEEEccccccHHHHHHHHHHcccEEEEEcccccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHEEEEHHHHHHHEEEHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEHHHccccccccccccccccccEccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccEEccccEEEEEEcccccEEEEEcccccEEEEEcccHHHHHHHccHEEEcccEccccHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccccccccccccccEEEEEEEEcccccHHccHHHHHHHHcccEEEEEccccHHHHHHHHHccccEcccccEEEEEcccccccHHHHccccccccccccccEEEEcccccHHHcccccccEcEcccHHHHHHHHHHcHHHHHHHccccEEEEEccHHHHHHHHHHHHHcccEEEEEcccccccHHHHHccEEEEEcccccccc
Coil and Loop (DISEMBL)
MFFQLILMVSMQIISFIIVhkfawfepfvytnaisyscyeNYAVFSISMFQYIILAITfsqgkpyrtpiyknkLFILSIIIMTWVCIYITLIPSEFIIQFLqlrfppnmqfPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWsndyksckyigieneldsnymwpklssdpepnyeilrgrsLWDIVIKSLDIitivippalpatmtVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDkmfestgwtleepmkfvpENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILenrlkpqtEGVIKELKDARVKVVMITGDNIQTAISVAkecgiidpgetvvdvsavpgglkecpkvyfTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMcgdgandcGALRAAHagislseaespid
Flexible Loop (DISEMBL)
MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIvippalpatMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALasrtlsiedyKHLNYMKREDIEKDLEFLGLIILenrlkpqtegvIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSaiqtkakklnyskteeelglssgayKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAgislseaespid
Low Complexity Region (SEG)
MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDqkqqlvlelqqlGYYVAMCGDGANDCGALRAAHAGISLSEAESPID
Disordered region (IsUnstruct)
*FFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSS**EPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAG***********
Disordered Region (DISOPRED)
MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRW***************LDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINS***********YALTRLKKYNISCI*******SGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA****************LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA*S***
Disordered Region (DISEMBL)
MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS*********
Disordered Region (DISPRO)
MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE****
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYKSCKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	523
MGI|MGI:2685387	1219	Atp13a3 "ATPase type 13A3" [Mu	0.445	0.191	0.400	4.6e-61
UNIPROTKB|H0Y4Z2	576	ATP13A4 "Probable cation-trans	0.443	0.402	0.432	1.8e-60
UNIPROTKB|E1C7N6	1223	ATP13A3 "Uncharacterized prote	0.447	0.191	0.404	2.2e-59
UNIPROTKB|G3V677	1219	LOC678704 "RCG36659, isoform C	0.445	0.191	0.400	1.2e-58
RGD|1590881	1249	Atp13a3 "ATPase type 13A3" [Ra	0.445	0.186	0.400	1.4e-58
UNIPROTKB|Q4VNC0	1218	ATP13A5 "Probable cation-trans	0.443	0.190	0.457	5.1e-58
UNIPROTKB|E1BG26	1226	ATP13A3 "Uncharacterized prote	0.441	0.188	0.405	4.9e-57
UNIPROTKB|Q4VNC1	1196	ATP13A4 "Probable cation-trans	0.443	0.193	0.432	7.5e-57
MGI|MGI:2444068	1216	Atp13a5 "ATPase type 13A5" [Mu	0.443	0.190	0.451	1.2e-56
UNIPROTKB|F1N272	1197	ATP13A4 "Uncharacterized prote	0.441	0.192	0.417	2.1e-56

MGI|MGI:2685387 Atp13a3 "ATPase type 13A3" [Mus musculus (taxid:10090)]

 Score = 458 (166.3 bits), Expect = 4.6e-61, Sum P(4) = 4.6e-61
 Identities = 97/242 (40%), Positives = 152/242 (62%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKH-LNYMKREDIEKDLEFLGLIILENRL 347
             VP +   VL +YT+QG+RVIALA R L  +   H + ++ R+ IE +++F+GLII++N+L
Sbjct:   663 VPVDFEKVLEDYTKQGFRVIALAHRKLESKLTWHKVQHISRDAIENNMDFMGLIIMQNKL 722

Query:   348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
             K +T  V+++L  A ++ VM+TGDN+ TA+SVA++CG+I P + V+   A+P    +  K
Sbjct:   723 KQETPAVLEDLHKANIRTVMVTGDNMLTAVSVARDCGMILPQDKVIIAEALPPKDGKVAK 782

Query:   408 V--YFT-----VSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPEL 460
             +  ++T      S  SAI ++A  +  +    E  L    Y FA+ GKS+ +I +   +L
Sbjct:   783 INWHYTDSLSQCSESSAIDSEAIPIKLAHDSLE-DLEVTRYHFAMNGKSFSVILEHFQDL 841

Query:   461 IPRIIVKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAES 520
             +P++++ G +FARM+ D             Y+V MCGDGANDCGAL+ AH GISLSE E+
Sbjct:   842 VPKLMLHGTVFARMAPDQKTQLVEALQNVDYFVGMCGDGANDCGALKRAHGGISLSELEA 901

Query:   521 PI 522
              +
Sbjct:   902 SV 903

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006812 "cation transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|H0Y4Z2 ATP13A4 "Probable cation-transporting ATPase 13A4" [Homo sapiens (taxid:9606)]

 Score = 469 (170.2 bits), Expect = 1.8e-60, Sum P(3) = 1.8e-60
 Identities = 102/236 (43%), Positives = 142/236 (60%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
             VP + VS L  YT QG+RVIALA + L  E+  H   + RE +E DL FLGL+ILENRLK
Sbjct:   279 VPTSFVSELQIYTTQGFRVIALAYKKL--ENDHHATTLTRETVESDLIFLGLLILENRLK 336

Query:   349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
              +T+ V++EL  AR++ VMITGDN+QTAI+VA++ G++   + V+ + A          +
Sbjct:   337 EETKPVLEELISARIRTVMITGDNLQTAITVARKSGMVSESQKVILIEANETTGSSSASI 396

Query:   409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSS--GAYKFAVTGKSWELIRDQMPELIPRIIV 466
              +T+           + NY    +E+      G+Y FA+TGKS+ +I      L+P+I++
Sbjct:   397 SWTLVEEKKHIMYGNQDNYINIRDEVSDKGREGSYHFALTGKSFHVISQHFSSLLPKILI 456

Query:   467 KGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522
              G IFARMS               Y+V MCGDGANDCGAL+ AH GISLSE E+ +
Sbjct:   457 NGTIFARMSPGQKSSLVEEFQKLDYFVGMCGDGANDCGALKMAHVGISLSEQEASV 512

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C7N6 ATP13A3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 455 (165.2 bits), Expect = 2.2e-59, Sum P(4) = 2.2e-59
 Identities = 98/242 (40%), Positives = 148/242 (61%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKH-LNYMKREDIEKDLEFLGLIILENRL 347
             VP +  SVL EYT+QG+RVIALA R L  +   H +  + R+ IE +++F+GLII++N+L
Sbjct:   663 VPVDFESVLEEYTKQGFRVIALAHRKLESKLTWHKVQTINRDAIESNMDFMGLIIMQNKL 722

Query:   348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
             K +T  V+++L  A ++ VM+TGDN+ TAISVA++CG+I P + V+   A+P    +  +
Sbjct:   723 KQETPAVLEDLHKANIRTVMVTGDNMLTAISVARDCGMILPQDKVIIAEALPPKDGQAAR 782

Query:   408 VYFTVSGVSAIQTKAKKLNYSK------TEEEL-GLSSGAYKFAVTGKSWELIRDQMPEL 460
             + +  +   A  T +     S+        E L  L    Y FA+ GKS+ +I +   +L
Sbjct:   783 INWHYADTLARCTSSSPAINSEDIPVKLVHESLEDLQVTKYHFAMNGKSFAVILEHFQDL 842

Query:   461 IPRIIVKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAES 520
             +P++++ G +FARM+ D             YYV MCGDGANDCGAL+ AH GISLSE E+
Sbjct:   843 VPKLVLHGTVFARMAPDQKTQLVEALQNVDYYVGMCGDGANDCGALKRAHGGISLSELEA 902

Query:   521 PI 522
              +
Sbjct:   903 SV 904

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|G3V677 LOC678704 "RCG36659, isoform CRA_c" [Rattus norvegicus (taxid:10116)]

 Score = 457 (165.9 bits), Expect = 1.2e-58, Sum P(3) = 1.2e-58
 Identities = 97/242 (40%), Positives = 152/242 (62%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKH-LNYMKREDIEKDLEFLGLIILENRL 347
             VP +   VL +YT+QG+RVIALA R L  +   H + ++ R+ IE +++F+GLII++N+L
Sbjct:   663 VPVDFEKVLEDYTKQGFRVIALAHRKLESKLTWHKVQHVSRDAIENNMDFMGLIIMQNKL 722

Query:   348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
             K +T  V+++L  A ++ VM+TGDN+ TA+SVA++CG+I P + V+   A+P    +  K
Sbjct:   723 KQETPAVLEDLHKANIRTVMVTGDNMLTAVSVARDCGMILPQDKVIIAEALPPKDGKVAK 782

Query:   408 V--YFT-----VSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPEL 460
             +  ++T      S  SAI ++A  +  +    E  L    Y FA+ GKS+ +I +   +L
Sbjct:   783 INWHYTDSLTQCSESSAIDSEAIPIKLAHDSLE-DLQVTRYHFAMNGKSFSVILEHFQDL 841

Query:   461 IPRIIVKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAES 520
             +P++++ G +FARM+ D             Y+V MCGDGANDCGAL+ AH GISLSE E+
Sbjct:   842 VPKLMLHGTVFARMAPDQKTQLVEALQNVDYFVGMCGDGANDCGALKRAHGGISLSEFEA 901

Query:   521 PI 522
              +
Sbjct:   902 SV 903

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|1590881 Atp13a3 "ATPase type 13A3" [Rattus norvegicus (taxid:10116)]

 Score = 457 (165.9 bits), Expect = 1.4e-58, Sum P(3) = 1.4e-58
 Identities = 97/242 (40%), Positives = 152/242 (62%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKH-LNYMKREDIEKDLEFLGLIILENRL 347
             VP +   VL +YT+QG+RVIALA R L  +   H + ++ R+ IE +++F+GLII++N+L
Sbjct:   663 VPVDFEKVLEDYTKQGFRVIALAHRKLESKLTWHKVQHVSRDAIENNMDFMGLIIMQNKL 722

Query:   348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
             K +T  V+++L  A ++ VM+TGDN+ TA+SVA++CG+I P + V+   A+P    +  K
Sbjct:   723 KQETPAVLEDLHKANIRTVMVTGDNMLTAVSVARDCGMILPQDKVIIAEALPPKDGKVAK 782

Query:   408 V--YFT-----VSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPEL 460
             +  ++T      S  SAI ++A  +  +    E  L    Y FA+ GKS+ +I +   +L
Sbjct:   783 INWHYTDSLTQCSESSAIDSEAIPIKLAHDSLE-DLQVTRYHFAMNGKSFSVILEHFQDL 841

Query:   461 IPRIIVKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAES 520
             +P++++ G +FARM+ D             Y+V MCGDGANDCGAL+ AH GISLSE E+
Sbjct:   842 VPKLMLHGTVFARMAPDQKTQLVEALQNVDYFVGMCGDGANDCGALKRAHGGISLSEFEA 901

Query:   521 PI 522
              +
Sbjct:   902 SV 903

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q4VNC0 ATP13A5 "Probable cation-transporting ATPase 13A5" [Homo sapiens (taxid:9606)]

 Score = 491 (177.9 bits), Expect = 5.1e-58, Sum P(3) = 5.1e-58
 Identities = 109/238 (45%), Positives = 145/238 (60%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
             VP+N    L  YT QG+RVIALA +TL + +   + ++ RE +E +L FLGL+I+ENRLK
Sbjct:   639 VPKNFPQELRSYTVQGFRVIALAHKTLKMGNLSEVEHLAREKVESELTFLGLLIMENRLK 698

Query:   349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
              +T+ V+KEL +AR++ VMITGDN+QTAI+VAK   +I PG  V+ V A     +E    
Sbjct:   699 KETKLVLKELSEARIRTVMITGDNLQTAITVAKNSEMIPPGSQVIIVEADEP--EEFVPA 756

Query:   409 YFTVSGVSAIQT-KAKKLNYSKTEEEL---GLSSGAYKFAVTGKSWELIRDQMPELIPRI 464
               T   V   +T   KK  Y  T       G     Y FA++GKS+++I      L+P+I
Sbjct:   757 SVTWQLVENQETGPGKKEIYMHTGNSSTPRGEGGSCYHFAMSGKSYQVIFQHFNSLLPKI 816

Query:   465 IVKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522
             +V G +FARMS               YYV MCGDGANDCGAL+AAHAGISLSE E+ +
Sbjct:   817 LVNGTVFARMSPGQKSSLIEEFQKLNYYVGMCGDGANDCGALKAAHAGISLSEQEASV 874

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E1BG26 ATP13A3 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 448 (162.8 bits), Expect = 4.9e-57, Sum P(3) = 4.9e-57
 Identities = 99/244 (40%), Positives = 152/244 (62%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKH-LNYMKREDIEKDLEFLGLIILENRL 347
             VP +   VL +YT+QG+RVIALA R L  +   H +  + R+ IE +++F+GLII++N+L
Sbjct:   667 VPVDFEKVLEDYTKQGFRVIALAHRKLESKLTWHKVQNVGRDAIENNMDFMGLIIMQNKL 726

Query:   348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
             K +T  V+++L  A ++ VM+TGDN+ TA+SVA++CG+I P + V+   A+P    +  K
Sbjct:   727 KRETPAVLEDLHKANIRTVMVTGDNMLTAVSVARDCGMILPQDKVIIAEALPPKDGKVAK 786

Query:   408 VYF----TVS---GVSAIQTKAK--KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMP 458
             + +    T++     SAI  +A   KL +   E+   L    Y FA+ GKS+ +I +   
Sbjct:   787 INWHYADTITQSNDSSAIDPEAIPIKLVHDNLED---LQVTRYHFAMNGKSFSVILEHFQ 843

Query:   459 ELIPRIIVKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEA 518
             +L+P++++ G +FARM+ D             YYV MCGDGANDCGAL+ AH GISLSE 
Sbjct:   844 DLVPKLMLHGTVFARMAPDQKTQLVEALQNVDYYVGMCGDGANDCGALKRAHGGISLSEL 903

Query:   519 ESPI 522
             E+ +
Sbjct:   904 EASV 907

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB|Q4VNC1 ATP13A4 "Probable cation-transporting ATPase 13A4" [Homo sapiens (taxid:9606)]

 Score = 469 (170.2 bits), Expect = 7.5e-57, Sum P(3) = 7.5e-57
 Identities = 102/236 (43%), Positives = 142/236 (60%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
             VP + VS L  YT QG+RVIALA + L  E+  H   + RE +E DL FLGL+ILENRLK
Sbjct:   639 VPTSFVSELQIYTTQGFRVIALAYKKL--ENDHHATTLTRETVESDLIFLGLLILENRLK 696

Query:   349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
              +T+ V++EL  AR++ VMITGDN+QTAI+VA++ G++   + V+ + A          +
Sbjct:   697 EETKPVLEELISARIRTVMITGDNLQTAITVARKSGMVSESQKVILIEANETTGSSSASI 756

Query:   409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSS--GAYKFAVTGKSWELIRDQMPELIPRIIV 466
              +T+           + NY    +E+      G+Y FA+TGKS+ +I      L+P+I++
Sbjct:   757 SWTLVEEKKHIMYGNQDNYINIRDEVSDKGREGSYHFALTGKSFHVISQHFSSLLPKILI 816

Query:   467 KGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522
              G IFARMS               Y+V MCGDGANDCGAL+ AH GISLSE E+ +
Sbjct:   817 NGTIFARMSPGQKSSLVEEFQKLDYFVGMCGDGANDCGALKMAHVGISLSEQEASV 872

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:2444068 Atp13a5 "ATPase type 13A5" [Mus musculus (taxid:10090)]

 Score = 487 (176.5 bits), Expect = 1.2e-56, Sum P(3) = 1.2e-56
 Identities = 106/235 (45%), Positives = 143/235 (60%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
             VP+N    L  YT QG+RVIALA +TL +E    ++++ RE +E +L FLGL+I+ENRLK
Sbjct:   640 VPKNFSQELRNYTVQGFRVIALAHKTLKMERLSDMDHLAREKVESELAFLGLLIMENRLK 699

Query:   349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSA-VPGGLKECPK 407
              +T  V+KEL +AR++ VM+TGDN+QTAI+VAK   +I  G  VV V A  PG L     
Sbjct:   700 KETRPVLKELSEARIRTVMVTGDNLQTAITVAKNSEMIPVGSQVVIVEANEPGDLVPA-S 758

Query:   408 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVK 467
             V + + G        KK  Y         +   Y FA++GKS++++      ++P+I+V 
Sbjct:   759 VTWQLVGTQE-PGSGKKDTYIDIGNSSVPAGKGYHFAMSGKSYQVLFHHFYSMLPQILVN 817

Query:   468 GAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522
             G IFARMS               YYV MCGDGANDCGAL+ AHAGISLSE E+ +
Sbjct:   818 GTIFARMSPGQKSSLVEEFQKLNYYVGMCGDGANDCGALKMAHAGISLSEQEASV 872

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1N272 ATP13A4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 462 (167.7 bits), Expect = 2.1e-56, Sum P(3) = 2.1e-56
 Identities = 99/237 (41%), Positives = 146/237 (61%)

Query:   289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
             VP + VS L  YT QG+RVI LA + L ++   H++ + R+ +E DL FLGL+ILENRLK
Sbjct:   640 VPTSFVSELQIYTTQGFRVIGLAYKKLEMDH--HISALMRDQVESDLIFLGLLILENRLK 697

Query:   349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSA-VPGGLKECPK 407
              +T+ V++EL  AR++ VMITGDN+QTAI+VA++ G++   + V+ + A    G      
Sbjct:   698 EETKSVLEELISARIRTVMITGDNLQTAITVARKSGMVSESQKVILIEANETTGSSSASI 757

Query:   408 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSS--GAYKFAVTGKSWELIRDQMPELIPRII 465
              +  +     I  + +  +Y    EE+  +S  G+Y FA+ GKS+++I      L+P+I+
Sbjct:   758 SWKLLEEKKHIACRNQD-SYINIREEISDNSKEGSYHFALNGKSFQVISQHFSSLLPKIL 816

Query:   466 VKGAIFARMSSDXXXXXXXXXXXXGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522
             + G IFARMS               Y+V MCGDGANDCGAL+ AH G+SLSE E+ +
Sbjct:   817 MNGTIFARMSPGQKSSLVEEFQKLDYFVGMCGDGANDCGALKMAHVGVSLSEQEASV 873

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	523
TIGR01657	1054	TIGR01657, P-ATPase-V, P-type ATPase of unknown pu	2e-71
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	4e-42
TIGR01494	543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	8e-27
TIGR01116	917	TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic	8e-19
TIGR01657	1054	TIGR01657, P-ATPase-V, P-type ATPase of unknown pu	1e-16
TIGR01652	1057	TIGR01652, ATPase-Plipid, phospholipid-translocati	4e-15
TIGR01522	884	TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-	5e-15
TIGR01657	1054	TIGR01657, P-ATPase-V, P-type ATPase of unknown pu	6e-14
TIGR01524	867	TIGR01524, ATPase-IIIB_Mg, magnesium-translocating	2e-13
TIGR01523	1053	TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu	8e-13
TIGR01517	944	TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-	4e-12
TIGR01494	543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	5e-12
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	4e-11
PRK15122	903	PRK15122, PRK15122, magnesium-transporting ATPase;	5e-10
PRK10517	902	PRK10517, PRK10517, magnesium-transporting ATPase	6e-10
TIGR01647	754	TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e	2e-09
COG2217	713	COG2217, ZntA, Cation transport ATPase [Inorganic	4e-09
pfam00702	187	pfam00702, Hydrolase, haloacid dehalogenase-like h	6e-09
TIGR01511	572	TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans	3e-07
COG2217	713	COG2217, ZntA, Cation transport ATPase [Inorganic	5e-07
TIGR01525	556	TIGR01525, ATPase-IB_hvy, heavy metal translocatin	1e-06
TIGR01525	556	TIGR01525, ATPase-IB_hvy, heavy metal translocatin	1e-06
TIGR01511	572	TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans	3e-06
TIGR01512	536	TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb	7e-06
PRK11033	741	PRK11033, zntA, zinc/cadmium/mercury/lead-transpor	3e-05
COG2216	681	COG2216, KdpB, High-affinity K+ transport system,	8e-05
PRK13582	205	PRK13582, thrH, phosphoserine phosphatase; Provisi	2e-04
PLN03190	1178	PLN03190, PLN03190, aminophospholipid translocase;	2e-04
TIGR02137	203	TIGR02137, HSK-PSP, phosphoserine phosphatase/homo	3e-04
TIGR01497	675	TIGR01497, kdpB, K+-transporting ATPase, B subunit	7e-04
COG4087	152	COG4087, COG4087, Soluble P-type ATPase [General f	0.001
PRK01122	679	PRK01122, PRK01122, potassium-transporting ATPase	0.001
TIGR01512	536	TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb	0.002
pfam00122	222	pfam00122, E1-E2_ATPase, E1-E2 ATPase	0.002
PRK10671	834	PRK10671, copA, copper exporting ATPase; Provision	0.002

>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)

 Score =  245 bits (628), Expect = 2e-71
 Identities = 102/237 (43%), Positives = 146/237 (61%), Gaps = 5/237 (2%)

Query: 289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
           VP +   VL  YT +GYRV+ALA + L     +    + R+ +E +L FLG I+ EN LK
Sbjct: 599 VPSDYQEVLKSYTREGYRVLALAYKELPKLTLQKAQDLSRDAVESNLTFLGFIVFENPLK 658

Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
           P T+ VIKELK A ++ VMITGDN  TA+ VA+ECGI++P  T++   A P    +  ++
Sbjct: 659 PDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPPESGKPNQI 718

Query: 409 YFTV-SGVSAIQTKAKK--LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRII 465
            F V   +    T+ +        + E+L  S   Y  A++GK++ +++   PEL+ R++
Sbjct: 719 KFEVIDSIPFASTQVEIPYPLGQDSVEDLLASR--YHLAMSGKAFAVLQAHSPELLLRLL 776

Query: 466 VKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522
               +FARM+ DQK+ LV  LQ+L Y V MCGDGANDCGAL+ A  GISLSEAE+ +
Sbjct: 777 SHTTVFARMAPDQKETLVELLQKLDYTVGMCGDGANDCGALKQADVGISLSEAEASV 833

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score =  160 bits (408), Expect = 4e-42
 Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 57/229 (24%)

Query: 289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
               +   + E   +G RV+A+A + L   +         ++IE DL FLGL  +E+  +
Sbjct: 494 GLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDDEV----DEIESDLVFLGLTGIEDPPR 549

Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
              +  I+EL++A +KV MITGD+++TAI++AKECGI    E+ +               
Sbjct: 550 EDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAESAL--------------- 594

Query: 409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 468
                                               + G   + + D   E +  ++ + 
Sbjct: 595 -----------------------------------VIDGAELDALSD---EELAELVEEL 616

Query: 469 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSE 517
           ++FAR+S +QK ++V  LQ+ G+ VAM GDG ND  AL+AA  GI++  
Sbjct: 617 SVFARVSPEQKARIVEALQKSGHVVAMTGDGVNDAPALKAADVGIAMGG 665

Length = 917

>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC

 Score =  113 bits (285), Expect = 8e-27
 Identities = 71/269 (26%), Positives = 105/269 (39%), Gaps = 78/269 (28%)

Query: 178 YEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVI---- 233
                  S++  ++++L ++ IV+PPALPA +TV       RL K  I   N   +    
Sbjct: 179 IRGWDPNSIFKALLRALIVLVIVVPPALPAAVTVALAVGDARLAKKGILVRNLNALEELG 238

Query: 234 ---------------NLMTVGKLYALTRLKKYNISCINSRVINVSGS-----INCVCF-D 272
                          N MT+  +Y      K + S       N   S        +   +
Sbjct: 239 KVDYLCSDKTGTLTKNKMTLQGVYIDG--GKEDNSSSLVACDNNYLSGDPMEKALLKSAE 296

Query: 273 KMFESTGWTLEEP----------------------------MKFVPENIVSVLS------ 298
            + ++     E                              +K  PE I+   +      
Sbjct: 297 LVGKADKGNKEYKILDVFPFSSVLKRMSVIVETPDGSDLLFVKGAPEFILERCNNYEEKY 356

Query: 299 -EYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKE 357
            E   QG RV+A AS+                ++E DLEFLGLI  E+ L+P  +  I+E
Sbjct: 357 LELARQGLRVLAFASK----------------ELEDDLEFLGLITFEDPLRPDAKETIEE 400

Query: 358 LKDARVKVVMITGDNIQTAISVAKECGII 386
           LK A +KVVMITGDN+ TA ++AKE GI 
Sbjct: 401 LKAAGIKVVMITGDNVLTAKAIAKELGID 429

The P-type ATPases are a large family of trans-membrane transporters acting on charged substances. The distinguishing feature of the family is the formation of a phosphorylated intermediate (aspartyl-phosphate) during the course of the reaction. Another common name for these enzymes is the E1-E2 ATPases based on the two isolable conformations: E1 (unphosphorylated) and E2 (phosphorylated). Generally, P-type ATPases consist of only a single subunit encompassing the ATPase and ion translocation pathway, however, in the case of the potassium (TIGR01497) and sodium/potassium (TIGR01106) varieties, these functions are split between two subunits. Additional small regulatory or stabilizing subunits may also exist in some forms. P-type ATPases are nearly ubiquitous in life and are found in numerous copies in higher organisms (at least 45 in Arabidopsis thaliana, for instance ). Phylogenetic analyses have revealed that the P-type ATPase subfamily is divided up into groups based on substrate specificities and this is represented in the various subfamily and equivalog models that have been made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525, IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++) TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+, H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++) TIGR01524, IV (phospholipid, flippase) TIGR01652 and V (unknown specificity) TIGR01657. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily. Length = 543

>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase

 Score = 89.8 bits (223), Expect = 8e-19
 Identities = 65/238 (27%), Positives = 102/238 (42%), Gaps = 59/238 (24%)

Query: 282 LEEPMKFVPENIVSVLSEY-TEQGYRVIALASR--TLSIEDYKHLNYMKREDIEKDLEFL 338
           L + MK     I+SV+ E  T +  R +ALA +      E+    +    E IE DL F+
Sbjct: 473 LTDKMK---NTILSVIKEMGTTKALRCLALAFKDIPDPREEDLLSDPANFEAIESDLTFI 529

Query: 339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAV 398
           G++ + +  +P+    I++ + A ++V+MITGDN +TA ++ +  GI  P E V   S  
Sbjct: 530 GVVGMLDPPRPEVADAIEKCRTAGIRVIMITGDNKETAEAICRRIGIFSPDEDVTFKS-- 587

Query: 399 PGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMP 458
                                                          TG+ +    D+M 
Sbjct: 588 ----------------------------------------------FTGREF----DEMG 597

Query: 459 ELIPRIIVKGA-IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL 515
               R   + A +F+R+    K +LV  LQ+ G  VAM GDG ND  AL+ A  GI++
Sbjct: 598 PAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAM 655

This model describes the P-type ATPase responsible for translocating calcium ions across the endoplasmic reticulum membrane of eukaryotes , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. These pumps transfer Ca2+ from the cytoplasm to the lumen of the endoplasmic reticulum. In humans and mice, at least, there are multiple isoforms of the SERCA pump with overlapping but not redundant functions. Defects in SERCA isoforms are associated with diseases in humans. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the latter of which is modelled by TIGR01522 [Transport and binding proteins, Cations and iron carrying compounds]. Length = 917

>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)

 Score = 82.8 bits (205), Expect = 1e-16
 Identities = 35/117 (29%), Positives = 58/117 (49%), Gaps = 3/117 (2%)

Query: 3    FQLILMVSMQIISFIIVHKFAWFEP--FVYTNAISYSCYENYAVFSISMFQYIILAITFS 60
             Q +L +  Q+     +H   W++P   V     ++    N  +F +S FQY+I AI  S
Sbjct: 938  IQFVLHILSQVYLVFELHAQPWYKPENPVDLEKENFPNLLNTVLFFVSSFQYLITAIVNS 997

Query: 61   QGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQL-RFPPNMQFPLIVI 116
            +G P+R PIYKNK F+  +I    + + + L P   + + LQ+   P   +  L+V 
Sbjct: 998  KGPPFREPIYKNKPFVYLLITGLGLLLVLLLDPHPLLGKILQIVPLPQEFRSKLLVW 1054

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054

>gnl|CDD|233509 TIGR01652, ATPase-Plipid, phospholipid-translocating P-type ATPase, flippase

 Score = 78.2 bits (193), Expect = 4e-15
 Identities = 64/247 (25%), Positives = 104/247 (42%), Gaps = 38/247 (15%)

Query: 297 LSEYTEQGYRVIALASRTLSIEDYKHLN--------YMKRED---------IEKDLEFLG 339
           L  Y  +G R + +A R LS E+Y+  N         +   +         IEKDL  LG
Sbjct: 565 LENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLG 624

Query: 340 LIILENRLKPQTEGV---IKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVS 396
              +E++L+   EGV   I+ L+ A +K+ ++TGD ++TAI++   C ++      + ++
Sbjct: 625 ATAIEDKLQ---EGVPETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVIT 681

Query: 397 AVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQ 456
           +    L     V                L  +  E      SG     + GKS     D+
Sbjct: 682 S--DSLDATRSVE---------AAIKFGLEGTSEEFNNLGDSGNVALVIDGKSLGYALDE 730

Query: 457 MPE---LIPRIIVKGAIFARMSSDQKQQLVLELQQ-LGYYVAMCGDGANDCGALRAAHAG 512
             E   L   +  K  I  R+S  QK  +V  +++  G      GDGAND   ++ A  G
Sbjct: 731 ELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQEADVG 790

Query: 513 ISLSEAE 519
           + +S  E
Sbjct: 791 VGISGKE 797

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes. Length = 1057

>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 59/235 (25%), Positives = 96/235 (40%), Gaps = 74/235 (31%)

Query: 281 TLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGL 340
           TL +  +   + I    +E    G RVIA AS     +                L FLGL
Sbjct: 482 TLTQQQR---DVIQEEAAEMASAGLRVIAFASGPEKGQ----------------LTFLGL 522

Query: 341 IILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPG 400
           + + +  +P  +  +  L    V+++MITGD+ +TA+S+A+  G+               
Sbjct: 523 VGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGM--------------- 567

Query: 401 GLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPEL 460
                                      SKT +     SG        K   +   Q+ ++
Sbjct: 568 --------------------------PSKTSQS---VSGE-------KLDAMDDQQLSQI 591

Query: 461 IPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL 515
           +P++    A+FAR S + K ++V  LQ+ G  VAM GDG ND  AL+ A  G+++
Sbjct: 592 VPKV----AVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAM 642

This model describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884

>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)

 Score = 74.3 bits (183), Expect = 6e-14
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 32/105 (30%)

Query: 180 ILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVG 239
           I  GR L  I+++SLDIITIV+PPALPA +++G   +L RLKK  I C +          
Sbjct: 389 IKDGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSP--------- 439

Query: 240 KLYALTRLKKYNISCINSRVINVSGSINCVCFDKMFESTGWTLEE 284
                 R             IN +G I+  CFDK    TG TL E
Sbjct: 440 -----FR-------------INFAGKIDVCCFDK----TG-TLTE 461

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054

>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 64/250 (25%), Positives = 99/250 (39%), Gaps = 65/250 (26%)

Query: 269 VCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKR 328
           VC  K F     TL E  K     +  + +E   QG RVIA+A++TL + +        +
Sbjct: 446 VCTHKRFGGAVVTLSESEK---SELQDMTAEMNRQGIRVIAVATKTLKVGE----ADFTK 498

Query: 329 EDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP 388
            D E+ L   G +   +  K  T+  I  L    + V ++TGDN    I  A+ C     
Sbjct: 499 TD-EEQLIIEGFLGFLDPPKESTKEAIAALFKNGINVKVLTGDN---EIVTARIC----- 549

Query: 389 GETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGK 448
                                                      +E+G+ +  +   + G 
Sbjct: 550 -------------------------------------------QEVGIDANDF---LLGA 563

Query: 449 SWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRA 508
             E + D   E + R + K  IFAR++  QK +++  L++ G+ V   GDG ND  ALR 
Sbjct: 564 DIEELSD---EELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRK 620

Query: 509 AHAGISLSEA 518
           A  GIS+  A
Sbjct: 621 ADVGISVDTA 630

This model describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms. These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis [Transport and binding proteins, Cations and iron carrying compounds]. Length = 867

>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type

 Score = 70.8 bits (173), Expect = 8e-13
 Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 52/246 (21%)

Query: 281 TLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNY----MKREDIEKDLE 336
            LE+  +   E I++ +     +G RV+A AS++    D          + R   E DLE
Sbjct: 580 PLEDCDR---ELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESDLE 636

Query: 337 FLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVS 396
           FLGLI + +  + ++ G +++   A + V M+TGD  +TA ++A+E GII P        
Sbjct: 637 FLGLIGIYDPPRNESAGAVEKCHQAGINVHMLTGDFPETAKAIAQEVGIIPPNF------ 690

Query: 397 AVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQ 456
                                             +E +          +TG  ++ + D+
Sbjct: 691 ------------------------------IHDRDEIMD------SMVMTGSQFDALSDE 714

Query: 457 MPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS 516
             + +  + +   + AR +   K +++  L +   + AM GDG ND  +L+ A+ GI++ 
Sbjct: 715 EVDDLKALCL---VIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMG 771

Query: 517 EAESPI 522
              S +
Sbjct: 772 INGSDV 777

Initially described as a calcium efflux ATPase , more recent work has shown that the S. pombe CTA3 gene is in fact a potassium ion efflux pump. This model describes the clade of fungal P-type ATPases responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump. Length = 1053

>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase

 Score = 68.6 bits (168), Expect = 4e-12
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 60/220 (27%)

Query: 296 VLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVI 355
           V+        R I LA R  + E++      +++   K L  +G++ +++ L+P     +
Sbjct: 537 VIEPLASDALRTICLAYRDFAPEEFP-----RKDYPNKGLTLIGVVGIKDPLRPGVREAV 591

Query: 356 KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGV 415
           +E + A + V M+TGDNI TA ++A+ CGI+                           G 
Sbjct: 592 QECQRAGITVRMVTGDNIDTAKAIARNCGILTF-------------------------GG 626

Query: 416 SAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMS 475
            A++ K                    +F        L+ ++M  ++P++ V     AR S
Sbjct: 627 LAMEGK--------------------EFR------SLVYEEMDPILPKLRV----LARSS 656

Query: 476 SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL 515
              KQ LVL L+ +G  VA+ GDG ND  AL+ A  G S+
Sbjct: 657 PLDKQLLVLMLKDMGEVVAVTGDGTNDAPALKLADVGFSM 696

This model describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes. In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by TIGR01116 and TIGR01522. This model is well separated from those. Length = 944

>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC

 Score = 67.7 bits (166), Expect = 5e-12
 Identities = 24/47 (51%), Positives = 33/47 (70%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS 516
           +FAR+S +QK Q+V  LQ+ G+ VAM GDG ND  AL+ A  GI++ 
Sbjct: 430 VFARVSPEQKLQIVEALQKKGHIVAMTGDGVNDAPALKKADVGIAMG 476

The P-type ATPases are a large family of trans-membrane transporters acting on charged substances. The distinguishing feature of the family is the formation of a phosphorylated intermediate (aspartyl-phosphate) during the course of the reaction. Another common name for these enzymes is the E1-E2 ATPases based on the two isolable conformations: E1 (unphosphorylated) and E2 (phosphorylated). Generally, P-type ATPases consist of only a single subunit encompassing the ATPase and ion translocation pathway, however, in the case of the potassium (TIGR01497) and sodium/potassium (TIGR01106) varieties, these functions are split between two subunits. Additional small regulatory or stabilizing subunits may also exist in some forms. P-type ATPases are nearly ubiquitous in life and are found in numerous copies in higher organisms (at least 45 in Arabidopsis thaliana, for instance ). Phylogenetic analyses have revealed that the P-type ATPase subfamily is divided up into groups based on substrate specificities and this is represented in the various subfamily and equivalog models that have been made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525, IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++) TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+, H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++) TIGR01524, IV (phospholipid, flippase) TIGR01652 and V (unknown specificity) TIGR01657. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily. Length = 543

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score = 65.6 bits (160), Expect = 4e-11
 Identities = 62/223 (27%), Positives = 99/223 (44%), Gaps = 38/223 (17%)

Query: 304 GYRVIALASRTLSIEDYKHLNYMKREDIE---KDLEFLGLIILENRLKPQTEGVIKELKD 360
           G RV+      L  E +        +D+     +L F+GLI + +  +      + + + 
Sbjct: 523 GERVLGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRS 582

Query: 361 ARVKVVMITGDNIQTAISVAKECGIIDPG-ETVVDVSAVPGGLKECPKVYFTVSGVSAIQ 419
           A +KV+M+TGD+  TA ++AK  GII  G ETV D++A         ++   VS V+   
Sbjct: 583 AGIKVIMVTGDHPITAKAIAKGVGIISEGNETVEDIAA---------RLNIPVSQVNPRD 633

Query: 420 TKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGA--IFARMSSD 477
            KA  ++ S                        ++D   E +  I+      +FAR S  
Sbjct: 634 AKACVVHGSD-----------------------LKDMTSEQLDEILKYHTEIVFARTSPQ 670

Query: 478 QKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAES 520
           QK  +V   Q+ G  VA+ GDG ND  AL+ A  G+++  A S
Sbjct: 671 QKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGS 713

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional

 Score = 62.0 bits (151), Expect = 5e-10
 Identities = 51/216 (23%), Positives = 79/216 (36%), Gaps = 60/216 (27%)

Query: 299 EYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKEL 358
            Y   G+RV+ +A+R +   + +          E+DL   G +   +  K      I  L
Sbjct: 506 AYNADGFRVLLVATREIPGGESRAQ---YSTADERDLVIRGFLTFLDPPKESAAPAIAAL 562

Query: 359 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAI 418
           ++  V V ++TGDN    I  AK C                                   
Sbjct: 563 RENGVAVKVLTGDN---PIVTAKIC----------------------------------- 584

Query: 419 QTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQ 478
                         E+GL  G     + G   E + D     + R + +  +FA+++  Q
Sbjct: 585 -------------REVGLEPGE---PLLGTEIEAMDD---AALAREVEERTVFAKLTPLQ 625

Query: 479 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 514
           K +++  LQ  G+ V   GDG ND  ALR A  GIS
Sbjct: 626 KSRVLKALQANGHTVGFLGDGINDAPALRDADVGIS 661

Length = 903

>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional

 Score = 61.6 bits (150), Expect = 6e-10
 Identities = 61/230 (26%), Positives = 89/230 (38%), Gaps = 66/230 (28%)

Query: 291 ENIVSVLSEYTEQGYRVIALASRTL--SIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
             I  V      QG RV+A+A++ L     DY+      R D E DL   G I   +  K
Sbjct: 500 RRIKRVTDTLNRQGLRVVAVATKYLPAREGDYQ------RAD-ESDLILEGYIAFLDPPK 552

Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
             T   +K LK + V V ++TGD+   A   AK C                         
Sbjct: 553 ETTAPALKALKASGVTVKILTGDSELVA---AKVCH------------------------ 585

Query: 409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 468
                                   E+GL +G     + G   E + D     +  +  + 
Sbjct: 586 ------------------------EVGLDAGEV---LIGSDIETLSDDE---LANLAERT 615

Query: 469 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
            +FAR++   K+++V  L++ G+ V   GDG ND  ALRAA  GIS+  A
Sbjct: 616 TLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGA 665

Length = 902

>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 58/232 (25%), Positives = 87/232 (37%), Gaps = 69/232 (29%)

Query: 287 KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENR 346
           K + E +   + E   +GYR + +A                R D E    FLGL+ L + 
Sbjct: 399 KEIEEKVEEKVDELASRGYRALGVA----------------RTDEEGRWHFLGLLPLFDP 442

Query: 347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP 406
            +  T+  I+  +   V+V M+TGD    AI  AKE                        
Sbjct: 443 PRHDTKETIERARHLGVEVKMVTGD--HLAI--AKE------------------------ 474

Query: 407 KVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIV 466
                                  T   LGL +  Y   V  K     RD +P  +  ++ 
Sbjct: 475 -----------------------TARRLGLGTNIYTADVLLKG--DNRDDLPSGLGEMVE 509

Query: 467 KGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
               FA +  + K ++V  LQ+ G+ V M GDG ND  AL+ A  GI+++ A
Sbjct: 510 DADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVAGA 561

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. Length = 754

>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 58.8 bits (143), Expect = 4e-09
 Identities = 24/57 (42%), Positives = 37/57 (64%)

Query: 331 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387
           +  D + +G+I L + L+P  +  I  LK   +KVVM+TGDN +TA ++AKE GI +
Sbjct: 522 VAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGDNRRTAEAIAKELGIDE 578

Length = 713

>gnl|CDD|216069 pfam00702, Hydrolase, haloacid dehalogenase-like hydrolase

 Score = 55.4 bits (133), Expect = 6e-09
 Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 33/184 (17%)

Query: 266 INCVCFDKMFESTGWTLEEPMKFVP--ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHL 323
           I  V FD      G TL +    VP  E ++   +                   E+    
Sbjct: 1   IKAVVFDL----DG-TLTDGEPVVPEAEALLEAAAALGVAIVIAAGENLTKEGREELVRR 55

Query: 324 NYMKREDIEK----------------DLEFLGLIILENRLKPQTEGVIKELKDARVKVVM 367
             ++    E+                DL  LGLI L + L P     +KELK+A +K+ +
Sbjct: 56  LLLRALAGEELLEELLRAGATVVAVLDLVVLGLIALTDPLYPGAREALKELKEAGIKLAI 115

Query: 368 ITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNY 427
           +TGDN  TA ++A+  G+ D   +      V  G  + PK++             ++L  
Sbjct: 116 LTGDNRLTANAIARLLGLFDALVSADLYGLVGVGKPD-PKIFELA---------LEELGV 165

Query: 428 SKTE 431
              E
Sbjct: 166 KPEE 169

This family is structurally different from the alpha/beta hydrolase family (pfam00561). This family includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure of the family consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of Pseudomonas sp. (S)-2-haloacid dehalogenase 1. The rest of the fold is composed of the core alpha/beta domain. Those members with the characteristic DxD triad at the N-terminus are probably phosphatidylglycerolphosphate (PGP) phosphatases involved in cardiolipin biosynthesis in the mitochondria. Length = 187

>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 20/49 (40%), Positives = 27/49 (55%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
           + A +  D K  L+ +LQ+ G  VAM GDG ND  AL  A  GI++   
Sbjct: 456 VRAEVLPDDKAALIKKLQEKGKVVAMVGDGINDAPALAQADVGIAIGAG 504

This model describes the P-type ATPase primarily responsible for translocating copper ions accross biological membranes. These transporters are found in prokaryotes and eukaryotes. This model encompasses those species which pump copper ions out of cells or organelles (efflux pumps such as CopA of Escherichia coli ) as well as those which pump the ion into cells or organelles either for the purpose of supporting life in extremely low-copper environments (for example CopA of Enterococcus hirae ) or for the specific delivery of copper to a biological complex for which it is a necessary component (for example FixI of Bradyrhizobium japonicum, or CtaA and PacS of Synechocystis). The substrate specificity of these transporters may, to a varying degree, include silver ions (for example, CopA from Archaeoglobus fulgidus). Copper transporters from this family are well known as the genes which are mutated in two human disorders of copper metabolism, Wilson's and Menkes' diseases. The sequences contributing to the seed of this model are all experimentally characterized. The copper P-type ATPases have been characterized as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species. This model and that describing the cadmium-ATPases (TIGR01512) are well separated, and thus we further type the copper-ATPases as IB1 (and the cadmium-ATPases as IB2). Several sequences which have not been characterized experimentally fall just below the cutoffs for both of these models. A sequence from Enterococcus faecalis scores very high against this model, but yet is annotated as an "H+/K+ exchanging ATPase". BLAST of this sequence does not hit anything else annotated in this way. This error may come from the characterization paper published in 1987. Accession GP|7415611 from Saccharomyces cerevisiae appears to be mis-annotated as a cadmium resistance protein. Accession OMNI|NTL01HS00542 from Halobacterium which scores above trusted for this model is annotated as "molybdenum-binding protein" although no evidence can be found for this classification [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]. Length = 572

>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 52.2 bits (126), Expect = 5e-07
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
           + A +  + K ++V ELQ  G  VAM GDG ND  AL AA  GI++   
Sbjct: 579 VRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSG 627

Length = 713

>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 21/49 (42%), Positives = 28/49 (57%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
           + A +  + K  +V ELQ+ G  VAM GDG ND  AL AA  GI++   
Sbjct: 427 VHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAG 475

This model encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512. Length = 556

>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 25/56 (44%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 331 IEKDLEFLGLIILENRLKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGI 385
           +  D E LG+I L ++L+P+ +  I  LK A  +K+VM+TGDN   A +VA E GI
Sbjct: 369 VAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGI 424

This model encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512. Length = 556

>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase

 Score = 49.6 bits (119), Expect = 3e-06
 Identities = 24/54 (44%), Positives = 37/54 (68%)

Query: 332 EKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
             + E  G++ L ++LKP+ + VI+ LK   ++ VM+TGDN +TA +VAKE GI
Sbjct: 400 AVNGELAGVLALADQLKPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGI 453

This model describes the P-type ATPase primarily responsible for translocating copper ions accross biological membranes. These transporters are found in prokaryotes and eukaryotes. This model encompasses those species which pump copper ions out of cells or organelles (efflux pumps such as CopA of Escherichia coli ) as well as those which pump the ion into cells or organelles either for the purpose of supporting life in extremely low-copper environments (for example CopA of Enterococcus hirae ) or for the specific delivery of copper to a biological complex for which it is a necessary component (for example FixI of Bradyrhizobium japonicum, or CtaA and PacS of Synechocystis). The substrate specificity of these transporters may, to a varying degree, include silver ions (for example, CopA from Archaeoglobus fulgidus). Copper transporters from this family are well known as the genes which are mutated in two human disorders of copper metabolism, Wilson's and Menkes' diseases. The sequences contributing to the seed of this model are all experimentally characterized. The copper P-type ATPases have been characterized as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species. This model and that describing the cadmium-ATPases (TIGR01512) are well separated, and thus we further type the copper-ATPases as IB1 (and the cadmium-ATPases as IB2). Several sequences which have not been characterized experimentally fall just below the cutoffs for both of these models. A sequence from Enterococcus faecalis scores very high against this model, but yet is annotated as an "H+/K+ exchanging ATPase". BLAST of this sequence does not hit anything else annotated in this way. This error may come from the characterization paper published in 1987. Accession GP|7415611 from Saccharomyces cerevisiae appears to be mis-annotated as a cadmium resistance protein. Accession OMNI|NTL01HS00542 from Halobacterium which scores above trusted for this model is annotated as "molybdenum-binding protein" although no evidence can be found for this classification [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]. Length = 572

>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

 Score = 48.5 bits (116), Expect = 7e-06
 Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 1/56 (1%)

Query: 331 IEKDLEFLGLIILENRLKPQTEGVIKELKDARV-KVVMITGDNIQTAISVAKECGI 385
           + +D  +LG I+L +  +P     I ELK   + KVVM+TGD    A  VA+E GI
Sbjct: 347 VARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGI 402

This model describes the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterized members of the seed alignment include: SP|P37617 from E. coli, SP|Q10866 from Mycobacterium tuberculosis and SP|Q59998 from Synechocystis PCC6803. The cadmium P-type ATPases have been characterized as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species. This model and that describing the copper-ATPases (TIGR01511) are well separated, and thus we further type the copper-ATPases as IB1 and the cadmium-ATPases as IB2. Several sequences which have not been characterized experimentally fall just below trusted cutoff for both of these models (SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from Sulfolobus solfataricus, OMNI|NTL01CJ01098 from Campylobacter jejuni, OMNI|NTL01HS01687 from Halobacterium sp., GP|6899169 from Ureaplasma urealyticum and OMNI|HP1503 from Helicobacter pylori) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 536

>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional

 Score = 46.1 bits (110), Expect = 3e-05
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
           ++ + LGLI L++ L+      I ELK   +K VM+TGDN + A ++A E GI
Sbjct: 555 RNDDVLGLIALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGI 607

Length = 741

>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

 Score = 44.9 bits (107), Expect = 8e-05
 Identities = 22/57 (38%), Positives = 35/57 (61%)

Query: 331 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387
           + ++   LG+I L++ +KP  +    EL+   +K VMITGDN  TA ++A E G+ D
Sbjct: 432 VVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD 488

Length = 681

>gnl|CDD|237437 PRK13582, thrH, phosphoserine phosphatase; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 18/37 (48%), Positives = 20/37 (54%)

Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
           D K+Q V  L+ LGY V   GD  ND   L  A AGI
Sbjct: 131 DGKRQAVKALKSLGYRVIAAGDSYNDTTMLGEADAGI 167

Length = 205

>gnl|CDD|215623 PLN03190, PLN03190, aminophospholipid translocase; Provisional

 Score = 44.1 bits (104), Expect = 2e-04
 Identities = 57/248 (22%), Positives = 110/248 (44%), Gaps = 32/248 (12%)

Query: 297 LSEYTEQGYRVIALASRTLSIEDYK--HLNY------------MKRE---DIEKDLEFLG 339
           L  Y+  G R + +  R L+  +++  H ++            + R+   ++E +L  LG
Sbjct: 660 LHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILG 719

Query: 340 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399
              +E++L+      I+ L+ A +KV ++TGD  +TAIS+     ++    T + +++  
Sbjct: 720 ASAIEDKLQQGVPEAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINS-- 777

Query: 400 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT----GKSWELIRD 455
              + C K     S   A+    K    S   +  G SS A    V     G S   + D
Sbjct: 778 NSKESCRK-----SLEDALVMSKKLTTVSGISQNTGGSSAAASDPVALIIDGTSLVYVLD 832

Query: 456 -QMPELIPRIIVKGAIF--ARMSSDQKQQLVLELQQLGYYVAMC-GDGANDCGALRAAHA 511
            ++ E + ++  K ++    R++  QK  +V  ++     + +  GDGAND   ++ A  
Sbjct: 833 SELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDVSMIQMADV 892

Query: 512 GISLSEAE 519
           G+ +S  E
Sbjct: 893 GVGISGQE 900

Length = 1178

>gnl|CDD|162723 TIGR02137, HSK-PSP, phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 19/47 (40%), Positives = 23/47 (48%)

Query: 476 SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI 522
            D K+Q V+  + L Y V   GD  ND   L  AHAGI     E+ I
Sbjct: 130 KDPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGILFHAPENVI 176

This protein is has been characterized as both a phosphoserine phosphatase and a phosphoserine:homoserine phosphotransferase. In Pseudomonas aeruginosa, where the characterization was done, a second phosphoserine phosphatase (SerB) and a second homoserine kinase (thrB) are found, but in Fibrobacter succinogenes neither are present. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain. The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338). Length = 203

>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit

 Score = 42.2 bits (99), Expect = 7e-04
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID 387
           D    G+I L++ +K   +    +L+   +K +MITGDN  TA ++A E G+ D
Sbjct: 434 DNRIYGVIYLKDIVKGGIKERFAQLRKMGIKTIMITGDNRLTAAAIAAEAGVDD 487

This model describes the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In E. coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit. The function of KdpC is unclear, although cit has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex. The potassium P-type ATPases have been characterized as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB). Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics. This model is very clear-cut, with a strong break between trusted hits and noise. All members of the seed alignment, from Clostridium, Anabaena and E. coli are in the characterized table. One sequence above trusted, OMNI|NTL01TA01282, is apparently mis-annotated in the primary literature, but properly annotated by TIGR [Transport and binding proteins, Cations and iron carrying compounds]. Length = 675

>gnl|CDD|226572 COG4087, COG4087, Soluble P-type ATPase [General function prediction only]

 Score = 39.1 bits (91), Expect = 0.001
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
           +FA    + K +++ EL++    V M G+GAND  ALR A  GI
Sbjct: 73  VFAGADPEMKAKIIRELKKRYEKVVMVGNGANDILALREADLGI 116

Length = 152

>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional

 Score = 41.3 bits (98), Expect = 0.001
 Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 6/58 (10%)

Query: 333 KDLEFLGLIILENRLKPQTEGV---IKELKDARVKVVMITGDNIQTAISVAKECGIID 387
           +D   LG+I L++ +KP   G+     EL+   +K VMITGDN  TA ++A E G+ D
Sbjct: 432 EDNRVLGVIYLKDIVKP---GIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVDD 486

Length = 679

>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

 Score = 40.8 bits (96), Expect = 0.002
 Identities = 20/51 (39%), Positives = 30/51 (58%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAES 520
           + A +  + K ++V EL++    VAM GDG ND  AL AA  GI++  + S
Sbjct: 405 VHAELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASGS 455

This model describes the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterized members of the seed alignment include: SP|P37617 from E. coli, SP|Q10866 from Mycobacterium tuberculosis and SP|Q59998 from Synechocystis PCC6803. The cadmium P-type ATPases have been characterized as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species. This model and that describing the copper-ATPases (TIGR01511) are well separated, and thus we further type the copper-ATPases as IB1 and the cadmium-ATPases as IB2. Several sequences which have not been characterized experimentally fall just below trusted cutoff for both of these models (SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from Sulfolobus solfataricus, OMNI|NTL01CJ01098 from Campylobacter jejuni, OMNI|NTL01HS01687 from Halobacterium sp., GP|6899169 from Ureaplasma urealyticum and OMNI|HP1503 from Helicobacter pylori) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 536

>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 180 ILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVI 233
             RG    + ++++L ++    P ALP  + +       RL K  I   N   +
Sbjct: 167 FFRGGDFLEALLRALAVLVAACPEALPLAVPLALAVGAGRLAKKGILVKNLSAL 220

Length = 222

>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional

 Score = 40.9 bits (96), Expect = 0.002
 Identities = 18/39 (46%), Positives = 22/39 (56%)

Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL 515
           D K + +  LQ  G  VAM GDG ND  AL  A  GI++
Sbjct: 699 DGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAM 737

Length = 834

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	523
KOG0208|consensus	1140		100.0
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	100.0
KOG0204|consensus	1034		100.0
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	100.0
KOG0202|consensus	972		100.0
KOG0209|consensus	1160		100.0
PRK15122	903	magnesium-transporting ATPase; Provisional	100.0
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	100.0
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	100.0
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	100.0
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	100.0
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	100.0
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	100.0
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	100.0
PRK01122	679	potassium-transporting ATPase subunit B; Provision	100.0
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	100.0
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	100.0
PRK14010	673	potassium-transporting ATPase subunit B; Provision	100.0
KOG0203|consensus	1019		100.0
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	100.0
KOG0207|consensus	951		99.98
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	99.98
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.97
PRK10671	834	copA copper exporting ATPase; Provisional	99.96
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.96
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.95
KOG0210|consensus	1051		99.95
KOG0206|consensus	1151		99.95
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.95
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.94
PLN03190	1178	aminophospholipid translocase; Provisional	99.94
KOG0205|consensus	942		99.92
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	99.91
KOG0208|consensus	1140		99.81
KOG0209|consensus	1160		99.79
PRK10513	270	sugar phosphate phosphatase; Provisional	99.76
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	99.74
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	99.74
PRK10976	266	putative hydrolase; Provisional	99.71
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.68
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	99.67
PLN02887	580	hydrolase family protein	99.66
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	99.65
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	99.64
PRK01158	230	phosphoglycolate phosphatase; Provisional	99.62
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	99.62
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	99.61
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.6
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	99.6
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.57
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	99.56
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	99.49
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	99.46
COG4087	152	Soluble P-type ATPase [General function prediction	99.44
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	99.43
PTZ00174	247	phosphomannomutase; Provisional	99.41
PLN02382	413	probable sucrose-phosphatase	99.41
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	99.37
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	99.34
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	99.3
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	99.13
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	99.12
PRK11133	322	serB phosphoserine phosphatase; Provisional	99.12
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	99.07
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	99.02
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	98.99
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	98.94
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	98.87
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	98.8
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	98.71
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	98.69
PLN02423	245	phosphomannomutase	98.69
KOG1615|consensus	227		98.62
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	98.55
PRK13582	205	thrH phosphoserine phosphatase; Provisional	98.55
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	98.55
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	98.47
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	98.41
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	98.41
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	98.4
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	98.4
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	98.31
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	98.26
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	98.26
PLN02954	224	phosphoserine phosphatase	98.13
PLN02580	384	trehalose-phosphatase	98.11
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	98.03
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	98.02
COG0546	220	Gph Predicted phosphatases [General function predi	97.99
PRK08238	479	hypothetical protein; Validated	97.98
PRK13222	226	phosphoglycolate phosphatase; Provisional	97.95
PRK11590	211	hypothetical protein; Provisional	97.95
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	97.92
PRK13223	272	phosphoglycolate phosphatase; Provisional	97.78
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	97.77
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	97.76
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	97.69
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	97.68
PRK13288	214	pyrophosphatase PpaX; Provisional	97.6
PRK13226	229	phosphoglycolate phosphatase; Provisional	97.53
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	97.53
PLN03017	366	trehalose-phosphatase	97.47
PF00122	230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	97.44
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	97.44
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	97.44
PHA02530	300	pseT polynucleotide kinase; Provisional	97.42
COG4359	220	Uncharacterized conserved protein [Function unknow	97.33
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	97.3
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	97.25
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	97.21
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	97.2
PRK13225	273	phosphoglycolate phosphatase; Provisional	97.2
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	97.17
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	97.16
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	97.08
PRK14988	224	GMP/IMP nucleotidase; Provisional	96.98
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	96.97
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	96.96
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	96.95
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	96.88
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	96.86
PRK11587	218	putative phosphatase; Provisional	96.84
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	96.83
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	96.81
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	96.77
PLN02575	381	haloacid dehalogenase-like hydrolase	96.74
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	96.74
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	96.73
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	96.61
KOG3120|consensus	256		96.59
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	96.53
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	96.46
PLN02940	382	riboflavin kinase	96.43
PRK06769	173	hypothetical protein; Validated	96.33
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	96.3
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	96.3
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	96.29
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	96.24
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	96.24
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	96.08
PLN02151	354	trehalose-phosphatase	95.92
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	95.85
PLN02645	311	phosphoglycolate phosphatase	95.8
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	95.79
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	95.76
PRK09449	224	dUMP phosphatase; Provisional	95.61
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	95.59
PLN02811	220	hydrolase	95.56
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	95.41
PF00689	182	Cation_ATPase_C: Cation transporting ATPase, C-ter	95.38
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	95.16
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	95.04
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	94.97
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	94.94
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	94.9
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	94.79
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	94.77
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	94.68
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	94.37
PLN02177	497	glycerol-3-phosphate acyltransferase	94.28
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	93.76
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	93.75
COG4030	315	Uncharacterized protein conserved in archaea [Func	93.64
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	93.55
PRK10444	248	UMP phosphatase; Provisional	93.54
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	93.35
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	93.34
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	93.28
PHA02597	197	30.2 hypothetical protein; Provisional	93.19
TIGR02468	1050	sucrsPsyn_pln sucrose phosphate synthase/possible	93.19
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	93.09
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	92.98
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	92.8
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	92.75
PRK10563	221	6-phosphogluconate phosphatase; Provisional	92.38
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	92.19
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	92.1
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	91.76
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	91.62
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	91.54
PHA03398	303	viral phosphatase superfamily protein; Provisional	91.01
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	90.66
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	90.14
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	90.01
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	89.77
COG0241	181	HisB Histidinol phosphatase and related phosphatas	88.68
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	87.89
PRK10748	238	flavin mononucleotide phosphatase; Provisional	87.54
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	86.66
COG3700	237	AphA Acid phosphatase (class B) [General function	86.57
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	86.29
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	85.89
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	84.42
KOG4383|consensus	1354		84.22
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	82.46
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	81.39
PRK15122	903	magnesium-transporting ATPase; Provisional	80.43
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	80.14

>KOG0208|consensus

Probab=100.00  E-value=8.5e-49  Score=411.11  Aligned_cols=317  Identities=49%  Similarity=0.788  Sum_probs=276.9

Q ss_pred             eeecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCC
Q psy78           179 EILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSR  258 (523)
Q Consensus       179 ~~~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~  258 (523)
                      ....|.++...++++++++++.+|||||++++++..+|..||+|+                           ||+|.+|.
T Consensus       408 l~~~g~~~~~iiirsLDliTi~VPPALPAaltvG~~~a~~RLkkk---------------------------~IfCisP~  460 (1140)
T KOG0208|consen  408 LNLLGVPLKTIIIRSLDLITIVVPPALPAALTVGIIYAQSRLKKK---------------------------GIFCISPQ  460 (1140)
T ss_pred             HHHcCCCHHHHhhhhhcEEEEecCCCchhhhhHHHHHHHHHHHhc---------------------------CeEEcCcc
Confidence            345788999999999999999999999999999999999999999                           99999999


Q ss_pred             ccccCCceeEEeecc-----------------------------------------------------------------
Q psy78           259 VINVSGSINCVCFDK-----------------------------------------------------------------  273 (523)
Q Consensus       259 ~~~~~~~v~~v~fDK-----------------------------------------------------------------  273 (523)
                      +++.+|+++++||||                                                                 
T Consensus       461 rIn~~G~i~~~cFDKTGTLTEdGLDl~gv~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~atCHSL~~  540 (1140)
T KOG0208|consen  461 RINLCGKLNLVCFDKTGTLTEDGLDLWGVVPVERNVDDGPELKVVTEDSLQLFYKLSLRSSSLPMGNLVAAMATCHSLTL  540 (1140)
T ss_pred             ceeecceeeEEEEcCCCcccccceeEEEEEeccccccccchhhhhhhhhccceeeccccccCCchHHHHHHHhhhceeEE
Confidence            999999999999999                                                                 


Q ss_pred             -------------ccccccccccCCC------------------------------------------------------
Q psy78           274 -------------MFESTGWTLEEPM------------------------------------------------------  286 (523)
Q Consensus       274 -------------~~~~~~~~~~~~~------------------------------------------------------  286 (523)
                                   +|+.++|..++.+                                                      
T Consensus       541 v~g~l~GDPLdlkmfe~t~w~~ee~~~~~~~~~~~~~~~p~v~~p~~~~~~~~t~~~~~~~si~k~feF~S~LrRMSVIv  620 (1140)
T KOG0208|consen  541 VDGTLVGDPLDLKMFESTGWVYEEADIEDEATREFNTLIPTVVRPPENAFNQSTECGEGEISIVKQFEFSSALRRMSVIV  620 (1140)
T ss_pred             eCCeeccCceeeeeeeccceEEEeccccchhhhhhCCccCCEeCCCcccccCCCcCCCcceEEEEecccchhhheEEEEE
Confidence                         7788888764421                                                      


Q ss_pred             -------------------------CcchhHHHHHHHHHhhccCeEEEEEEecCCch-hHHHhhhcchhhhhccceeeee
Q psy78           287 -------------------------KFVPENIVSVLSEYTEQGYRVIALASRTLSIE-DYKHLNYMKREDIEKDLEFLGL  340 (523)
Q Consensus       287 -------------------------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~-~~~~~~~~~~~~~e~dl~~lG~  340 (523)
                                               +++|+++++.+++|+.+|+|++++|+|.++.. +.+.+. .+|+.+|+|++|+|+
T Consensus       621 ~~~~e~~~~~ftKGaPE~I~~ic~p~tvP~dy~evl~~Yt~~GfRVIAlA~K~L~~~~~~~~~~-~~Rd~vEs~l~FlGL  699 (1140)
T KOG0208|consen  621 STGGEDKMMVFTKGAPESIAEICKPETVPADYQEVLKEYTHQGFRVIALASKELETSTLQKAQK-LSRDTVESNLEFLGL  699 (1140)
T ss_pred             ecCCCCceEeeccCCHHHHHHhcCcccCCccHHHHHHHHHhCCeEEEEEecCccCcchHHHHhh-ccHhhhhccceeeEE
Confidence                                     06789999999999999999999999999865 444444 899999999999999


Q ss_pred             eeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhh
Q psy78           341 IILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQT  420 (523)
Q Consensus       341 i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~  420 (523)
                      +.+++++|++++.+|++|.++.|+++|+|||+..||..+|++||+..+..+++...-...+.....++.|...+.+....
T Consensus       700 iVmeNkLK~~T~~VI~eL~~AnIRtVMcTGDNllTaisVakeCgmi~p~~~v~~~~~~~~~~~~~~~i~w~~ve~~~~~~  779 (1140)
T KOG0208|consen  700 IVMENKLKEETKRVIDELNRANIRTVMCTGDNLLTAISVAKECGMIEPQVKVIIPELEPPEDDSIAQIVWLCVESQTQFL  779 (1140)
T ss_pred             EEeecccccccHHHHHHHHhhcceEEEEcCCchheeeehhhcccccCCCCeEEEEeccCCccCCCceeEEEEccCccccC
Confidence            99999999999999999999999999999999999999999999999988888887776666666777777665554443


Q ss_pred             hhhhcccCchhhh---hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEc
Q psy78           421 KAKKLNYSKTEEE---LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCG  497 (523)
Q Consensus       421 ~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~G  497 (523)
                      +............   +......++++++|+.+..+.+.+++.+..+..+..+|||++|.||.+.|+.+|+.+..|+|+|
T Consensus       780 ~~~~~~~~~~~~~~~~d~~~~~~yhlA~sG~~f~~i~~~~~~l~~~Il~~~~VfARMsP~qK~~Lie~lQkl~y~VgfCG  859 (1140)
T KOG0208|consen  780 DPKEPDPDLASVKLSLDVLSEKDYHLAMSGKTFQVILEHFPELVPKILLKGTVFARMSPDQKAELIEALQKLGYKVGFCG  859 (1140)
T ss_pred             CCCccCccccCCccChhhhccceeEEEecCchhHHHHhhcHHHHHHHHhcCeEEeecCchhHHHHHHHHHhcCcEEEecC
Confidence            3322222111111   3344567899999999999998889999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHhCCccEEecccCCCCC
Q psy78           498 DGANDCGALRAAHAGISLSEAESPID  523 (523)
Q Consensus       498 DG~ND~~MLk~A~vGIAMgna~~~va  523 (523)
                      ||.||+.+||+||+||+.+.|++++|
T Consensus       860 DGANDCgALKaAdvGISLSeaEASvA  885 (1140)
T KOG0208|consen  860 DGANDCGALKAADVGISLSEAEASVA  885 (1140)
T ss_pred             CCcchhhhhhhcccCcchhhhhHhhc
Confidence            99999999999999999999999887

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=100.00  E-value=2e-44  Score=410.76  Aligned_cols=342  Identities=38%  Similarity=0.636  Sum_probs=238.1

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccc-------------------cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINS-------------------RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~-------------------~t~~~m~v~~~~  242 (523)
                      .+.++.+.+.+++++++++||||||+++|++++.|+.||+|+|++|.+.                   +|+|+|+|.+++
T Consensus       391 ~~~~~~~~~l~~l~iiv~~vP~~LP~~~ti~l~~~~~rL~k~~il~~~~~~ie~lG~v~vicfDKTGTLTen~m~v~~v~  470 (1054)
T TIGR01657       391 DGRPLGKIILRSLDIITIVVPPALPAELSIGINNSLARLKKKGIFCTSPFRINFAGKIDVCCFDKTGTLTEDGLDLRGVQ  470 (1054)
T ss_pred             cCCcHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHCCEEEcCcccceecceeeEEEEcCCCCCccCCeeEEeEe
Confidence            4678889999999999999999999999999999999999997754222                   677777777776


Q ss_pred             hhhhcccc-c-----------------eeeecC---------Cc------------c----------------------c
Q psy78           243 ALTRLKKY-N-----------------ISCINS---------RV------------I----------------------N  261 (523)
Q Consensus       243 ~~~~~~~~-~-----------------il~~~~---------~~------------~----------------------~  261 (523)
                      ..+.-... +                 ..|.+.         +.            +                      .
T Consensus       471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~C~~~~~~~~~~~Gdp~E~al~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  550 (1054)
T TIGR01657       471 GLSGNQEFLKIVTEDSSLKPSITHKALATCHSLTKLEGKLVGDPLDKKMFEATGWTLEEDDESAEPTSILAVVRTDDPPQ  550 (1054)
T ss_pred             cccCccccccccccccccCchHHHHHHHhCCeeEEECCEEecCHHHHHHHHhCCCEEECCCCcccccccccceeccCCCc
Confidence            53210000 0                 000000         00            0                      0


Q ss_pred             cCCceeEEeecccccccc--ccc-----------cCCC--------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhH
Q psy78           262 VSGSINCVCFDKMFESTG--WTL-----------EEPM--------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDY  320 (523)
Q Consensus       262 ~~~~v~~v~fDK~~~~~~--~~~-----------~~~~--------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~  320 (523)
                      ....++.+-||...+...  .+.           +.|+        .+.|+++.+.+++++++|+||+++|||+++....
T Consensus       551 ~~~il~~~pF~S~~krMsvvv~~~~~~~~~~~~KGApE~Il~~c~~~~~p~~~~~~~~~~a~~G~RVLalA~k~l~~~~~  630 (1054)
T TIGR01657       551 ELSIIRRFQFSSALQRMSVIVSTNDERSPDAFVKGAPETIQSLCSPETVPSDYQEVLKSYTREGYRVLALAYKELPKLTL  630 (1054)
T ss_pred             eEEEEEEEeecCCCCEEEEEEEEcCCCeEEEEEECCHHHHHHHcCCcCCChhHHHHHHHHHhcCCEEEEEEEeecCccch
Confidence            000112223333110000  000           0000        1467889999999999999999999999974322


Q ss_pred             HHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCC
Q psy78           321 KHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPG  400 (523)
Q Consensus       321 ~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~  400 (523)
                      ......+|+.+|+|++|+|+++++|++||+++++|++|+++||+++|+|||++.||..+|+++||..+++.++..+....
T Consensus       631 ~~~~~~~r~~~E~~L~flGli~~~d~lr~~~~~~I~~l~~agi~v~miTGD~~~TA~~iA~~~gii~~~~~vi~~~~~~~  710 (1054)
T TIGR01657       631 QKAQDLSRDAVESNLTFLGFIVFENPLKPDTKEVIKELKRASIRTVMITGDNPLTAVHVARECGIVNPSNTLILAEAEPP  710 (1054)
T ss_pred             hhhhhccHHHHhcCceEEEEEEEecCCCccHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCCCCceEEEeecccc
Confidence            22222578889999999999999999999999999999999999999999999999999999999876666655543322


Q ss_pred             CCCCCCceEEEecCcchhhhhhhhcccCc-hhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhH
Q psy78           401 GLKECPKVYFTVSGVSAIQTKAKKLNYSK-TEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQK  479 (523)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K  479 (523)
                      .......+.|...+............... ...........+.++++|+.++.+.+..++.+.++..+..+|+|++|+||
T Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~itG~~l~~l~~~~~~~l~~~~~~~~VfAR~sP~qK  790 (1054)
T TIGR01657       711 ESGKPNQIKFEVIDSIPFASTQVEIPYPLGQDSVEDLLASRYHLAMSGKAFAVLQAHSPELLLRLLSHTTVFARMAPDQK  790 (1054)
T ss_pred             cCCCCceEEEEecCccccccccccccCcccccchhhhcccceEEEEEcHHHHHHHHhhHHHHHHHHhcCeEEEecCHHHH
Confidence            22233344554433211100000000000 00001112335678999999988877666677788888899999999999


Q ss_pred             HHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCCC
Q psy78           480 QQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID  523 (523)
Q Consensus       480 ~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~va  523 (523)
                      ..+|+.+++.|+.|+|+|||.||++|||+||+|||||+++.++|
T Consensus       791 ~~iV~~lq~~g~~V~m~GDG~ND~~ALK~AdVGIam~~~das~A  834 (1054)
T TIGR01657       791 ETLVELLQKLDYTVGMCGDGANDCGALKQADVGISLSEAEASVA  834 (1054)
T ss_pred             HHHHHHHHhCCCeEEEEeCChHHHHHHHhcCcceeeccccceee
Confidence            99999999999999999999999999999999999999865543

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>KOG0204|consensus

Probab=100.00  E-value=1.4e-40  Score=344.84  Aligned_cols=287  Identities=26%  Similarity=0.405  Sum_probs=211.5

Q ss_pred             CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc--------------cccc-----cceeeeeeehhhhh
Q psy78           184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS--------------CINS-----RVINLMTVGKLYAL  244 (523)
Q Consensus       184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~--------------~~~~-----~t~~~m~v~~~~~~  244 (523)
                      ..+.+.|+.+++++|+|+|+|||+|+|++++++++||.|.|++              +|||     +|.|+|||.+-|..
T Consensus       380 ~~~v~~f~i~VTilVVAVPEGLPLAVTLsLAys~kkMmkD~~LVRhL~ACETMGsAT~ICsDKTGTLT~N~MtVV~~~~~  459 (1034)
T KOG0204|consen  380 QEFVKFFIIAVTILVVAVPEGLPLAVTLSLAYSMKKMMKDNNLVRHLDACETMGSATAICSDKTGTLTTNRMTVVQSYIG  459 (1034)
T ss_pred             HHHHHHhhheeEEEEEECCCCccHHHHHHHHHHHHHHhcchhHHHHhHHHhhcCCceEEEecCcCceEeeeEEEEeeeec
Confidence            4567889999999999999999999999999999999999863              3666     89999999997764


Q ss_pred             hhccc------------------cce-------eeec--C-CccccCCc--------------------------eeEEe
Q psy78           245 TRLKK------------------YNI-------SCIN--S-RVINVSGS--------------------------INCVC  270 (523)
Q Consensus       245 ~~~~~------------------~~i-------l~~~--~-~~~~~~~~--------------------------v~~v~  270 (523)
                      ++-.+                  +||       ++++  + ...+.+|.                          .++.-
T Consensus       460 ~~~~k~~~~~~~~l~~~~~~ll~~gI~~Nt~g~v~~~~~~g~~~~~~GspTE~AlL~f~~~LG~~~~~~R~e~~v~kv~~  539 (1034)
T KOG0204|consen  460 SEHYKVNSPKSSNLPPSLLDLLLQGIAQNTTGSVVKPEKGGEQPEQLGSPTECALLGFGLKLGMDFQDVRPEEKVVKVYP  539 (1034)
T ss_pred             cccccccCcccccCCHHHHHHHHHHHhhcCCCeEEecCCCCcCccccCCHHHHHHHHHHHHhCcchHhhcchhheeEEec
Confidence            44322                  111       1110  0 01111111                          00111


Q ss_pred             ecc-------ccc--ccc----c-------------cccCCC------CcchhHHHHHHHHHhhccCeEEEEEEecCCch
Q psy78           271 FDK-------MFE--STG----W-------------TLEEPM------KFVPENIVSVLSEYTEQGYRVIALASRTLSIE  318 (523)
Q Consensus       271 fDK-------~~~--~~~----~-------------~~~~~~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~  318 (523)
                      |..       ..+  ..+    |             .++...      +.....+++.++.|+++|+|++++|||++...
T Consensus       540 FNS~kK~~gvvi~~~~~~~y~~~KGAsEiVL~~C~~~~~~~g~~~~~~e~~~~~~~~~Ie~mA~~~LRti~lAy~df~~~  619 (1034)
T KOG0204|consen  540 FNSVKKRMGVVIKLPDGGHYVHWKGASEIVLKSCEYYIDSNGELVPFNEDDRKSFKDVIEPMASEGLRTICLAYRDFVAG  619 (1034)
T ss_pred             cCcccceeeEEEEcCCCCeEEEEcChHHHHHHhhhheECCCCCEeeCCHHHHHHHHHHHHHHHHhhhheeeEEeeccccC
Confidence            111       000  000    0             000000      12234678899999999999999999997544


Q ss_pred             hHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecC
Q psy78           319 DYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAV  398 (523)
Q Consensus       319 ~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~  398 (523)
                      +.+..+..+.+..+.+++++|+++++||.||++++|++.||++|+.|-|+|||+..||++||.+|||..+++..++..| 
T Consensus       620 ~~~~~~~~~~~~~~~~lt~laivGIkDPvRPgV~~AV~~Cq~AGItVRMVTGDNI~TAkAIA~eCGILt~~~d~~~lEG-  698 (1034)
T KOG0204|consen  620 PDEEPSWDNEELPEGGLTLLAIVGIKDPVRPGVPEAVQLCQRAGITVRMVTGDNINTAKAIARECGILTPGGDFLALEG-  698 (1034)
T ss_pred             CCCCCCccccccCCCCeEEEEEeeccCCCCCCcHHHHHHHHHcCcEEEEEeCCcHHHHHHHHHHcccccCCCccceecc-
Confidence            2111111223567889999999999999999999999999999999999999999999999999999876654444433 


Q ss_pred             CCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHh
Q psy78           399 PGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQ  478 (523)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~  478 (523)
                                                                       +++..+   .+++..+++.+..+.+|.+|.+
T Consensus       699 -------------------------------------------------~eFr~~---s~ee~~~i~pkl~VlARSSP~D  726 (1034)
T KOG0204|consen  699 -------------------------------------------------KEFREL---SQEERDKIWPKLRVLARSSPND  726 (1034)
T ss_pred             -------------------------------------------------hhhhhc---CHHHHHhhhhhheeeecCCCch
Confidence                                                             333322   1234455666678999999999


Q ss_pred             HHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCCC
Q psy78           479 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID  523 (523)
Q Consensus       479 K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~va  523 (523)
                      |...++.|++.++.|++.|||.||.|+|+.||+|.|||-|..+||
T Consensus       727 K~lLVk~L~~~g~VVAVTGDGTNDaPALkeADVGlAMGIaGTeVA  771 (1034)
T KOG0204|consen  727 KHLLVKGLIKQGEVVAVTGDGTNDAPALKEADVGLAMGIAGTEVA  771 (1034)
T ss_pred             HHHHHHHHHhcCcEEEEecCCCCCchhhhhcccchhccccchhhh
Confidence            999999999999999999999999999999999999999999987

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-40  Score=370.53  Aligned_cols=279  Identities=30%  Similarity=0.471  Sum_probs=212.5

Q ss_pred             hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhhhhh-
Q psy78           186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLYALT-  245 (523)
Q Consensus       186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~~~~-  245 (523)
                      +.+++.++++++++++|+|||+.++++++.|+.+|+|+|++                |+++   +|+|+|+|.+++..+ 
T Consensus       295 ~~~~~~~~v~l~va~IPegLp~~vti~la~g~~~mak~~~ivr~l~avE~LG~v~vICsDKTGTLTqN~M~v~~~~~~~~  374 (917)
T COG0474         295 LLESFLTALALAVAAVPEGLPAVVTIALALGAQRMAKDNAIVRSLNAIETLGSVDVICSDKTGTLTQNKMTVKKIYINGG  374 (917)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhccchhhccchhhhccCccEEEecCCCCCccCeEEEEEEEeCCC
Confidence            78999999999999999999999999999999999999984                4444   899999999999884 


Q ss_pred             -h---------------ccccceeeecCCcc-------------------cc---------CCc----eeEEeecccccc
Q psy78           246 -R---------------LKKYNISCINSRVI-------------------NV---------SGS----INCVCFDKMFES  277 (523)
Q Consensus       246 -~---------------~~~~~il~~~~~~~-------------------~~---------~~~----v~~v~fDK~~~~  277 (523)
                       .               +.....+|.+....                   +.         +..    ++.+.||...+.
T Consensus       375 ~~~~~~~~~~~~~~~~~~l~~~~lc~~~~~~~~~~~~~gdptE~Al~~~a~~~~~~~~~~~~~~~~~~~~~~PFdS~rKr  454 (917)
T COG0474         375 GKDIDDKDLKDSPALLRFLLAAALCNSVTPEKNGWYQAGDPTEGALVEFAEKLGFSLDLSGLEVEYPILAEIPFDSERKR  454 (917)
T ss_pred             cccccccccccchHHHHHHHHHHhcCcccccccCceecCCccHHHHHHHHHhcCCcCCHHHHhhhcceeEEecCCCCceE
Confidence             1               01111133321111                   00         111    556666661111


Q ss_pred             cccccc------------CC----------------CCcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchh
Q psy78           278 TGWTLE------------EP----------------MKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKRE  329 (523)
Q Consensus       278 ~~~~~~------------~~----------------~~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~  329 (523)
                      .....+            .+                .++.++.+.+..++++++|+|++++|||.++......    ..+
T Consensus       455 Msviv~~~~~~~~~~~KGApe~il~~~~~~~~~~~~~~~~~~~~~~~~~~la~~glRvla~A~k~~~~~~~~~----~~~  530 (917)
T COG0474         455 MSVIVKTDEGKYILFVKGAPEVILERCKSIGELEPLTEEGLRTLEEAVKELASEGLRVLAVAYKKLDRAEKDD----EVD  530 (917)
T ss_pred             EEEEEEcCCCcEEEEEcCChHHHHHHhcccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcccccc----hhh
Confidence            100000            00                0133467778889999999999999999775432211    116


Q ss_pred             hhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceE
Q psy78           330 DIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVY  409 (523)
Q Consensus       330 ~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~  409 (523)
                      ..|+|+.|+|+++++||+|+++++||+.|+++||+++|+|||+..||.++|+++|+......                  
T Consensus       531 ~~E~dl~~lGl~g~~Dppr~~v~~aI~~l~~AGI~v~MiTGD~~~TA~aIa~~~Gi~~~~~~------------------  592 (917)
T COG0474         531 EIESDLVFLGLTGIEDPPREDVKEAIEELREAGIKVWMITGDHVETAIAIAKECGIEAEAES------------------  592 (917)
T ss_pred             hhhccceeehhhhccCCCCccHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHcCCCCCCCc------------------
Confidence            78999999999999999999999999999999999999999999999999999998532211                  


Q ss_pred             EEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC
Q psy78           410 FTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL  489 (523)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~  489 (523)
                                                      .++++|.+++.+.+.   .+.+.+.+..+|||++|+||..+|+.||++
T Consensus       593 --------------------------------~~vi~G~el~~l~~~---el~~~~~~~~VfARvsP~qK~~IV~~lq~~  637 (917)
T COG0474         593 --------------------------------ALVIDGAELDALSDE---ELAELVEELSVFARVSPEQKARIVEALQKS  637 (917)
T ss_pred             --------------------------------eeEeehHHhhhcCHH---HHHHHhhhCcEEEEcCHHHHHHHHHHHHhC
Confidence                                            345666666655443   445555566799999999999999999999


Q ss_pred             CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           490 GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       490 ~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      |+.|+|+|||.||+||||.||+|||||....+
T Consensus       638 g~vVamtGDGvNDapALk~ADVGIamg~~Gtd  669 (917)
T COG0474         638 GHVVAMTGDGVNDAPALKAADVGIAMGGEGTD  669 (917)
T ss_pred             CCEEEEeCCCchhHHHHHhcCccEEecccHHH
Confidence            99999999999999999999999999974443

>KOG0202|consensus

Probab=100.00  E-value=5.4e-39  Score=333.57  Aligned_cols=289  Identities=28%  Similarity=0.394  Sum_probs=211.5

Q ss_pred             CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc--------------cccc-----cceeeeeeehhhhh
Q psy78           184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS--------------CINS-----RVINLMTVGKLYAL  244 (523)
Q Consensus       184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~--------------~~~~-----~t~~~m~v~~~~~~  244 (523)
                      ..+.+-|..|+++.|+|+|+|||+.+|++++.|.+||+|+|++              +|||     +|+|+|||.++|..
T Consensus       277 k~~~~~f~IaVsLAVAAIPEGLPaVvT~tLALG~~rMakknaIVRkLPsVETLGc~~VICSDKTGTLTtN~Mtv~~i~~~  356 (972)
T KOG0202|consen  277 KGALYYFKIAVSLAVAAIPEGLPAVVTTTLALGTRRMAKKNAIVRKLPSVETLGCVNVICSDKTGTLTTNQMTVSKIFIP  356 (972)
T ss_pred             hchhhhhhHHHHHHHHhccCCCcchhhhhHHHhHHHHHhhhhhhhcccchhhccceeEEecCCCCcccccceEEEEEEec
Confidence            5667889999999999999999999999999999999999973              3555     89999999999985


Q ss_pred             hhccc----c----------ceeeecC----------CccccCCceeEEeecc---------------------------
Q psy78           245 TRLKK----Y----------NISCINS----------RVINVSGSINCVCFDK---------------------------  273 (523)
Q Consensus       245 ~~~~~----~----------~il~~~~----------~~~~~~~~v~~v~fDK---------------------------  273 (523)
                      .....    +          |=..++.          +.+..+..+-.+|.|-                           
T Consensus       357 ~~~~~~~~~f~~tg~ty~~~g~v~~~~~~~~~~~~~~~~l~~l~~i~~lCNda~v~~~~~~~~~~~G~pTE~AL~vlaeK  436 (972)
T KOG0202|consen  357 DGGTATVDEFNPTGTTYSPEGEVFKDGLYEKDKAGDNDLLQELAEICALCNDATVEYNDADCYEKVGEPTEGALIVLAEK  436 (972)
T ss_pred             ccccccccccccCCceeCCCCceEecCccccccccccHHHHHHHHHHHhhhhhhhhcCchhhHHhcCCchHHHHHHHHHH
Confidence            44310    0          0001110          1122222333444333                           


Q ss_pred             --cccc---cc-----------cc---------------------cc--CC---C-------------------------
Q psy78           274 --MFES---TG-----------WT---------------------LE--EP---M-------------------------  286 (523)
Q Consensus       274 --~~~~---~~-----------~~---------------------~~--~~---~-------------------------  286 (523)
                        .+..   ..           |+                     ..  .+   .                         
T Consensus       437 m~l~~~~~~~~s~~~~~~c~~~~~~~~~~~~elpFssdrK~Msv~c~~~~~~~~~~~fvKGA~E~Vl~rcs~~~~~~g~~  516 (972)
T KOG0202|consen  437 MGLPGTRSTNLSNEEASACNRVYSRLFKKIAELPFSSDRKSMSVKCSPAHGQSGYKMFVKGAPESVLERCSTYYGSDGQT  516 (972)
T ss_pred             cCCCcchhhcccccccccchhHHHHhhhheeEeecccccceEEEEEecCCCCccceEEecCChHHHHHhhhcEEccCCce
Confidence              0000   00           00                     00  00   0                         


Q ss_pred             -----CcchhHHHHHHHHHhhccCeEEEEEEecCCc-h--hHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHH
Q psy78           287 -----KFVPENIVSVLSEYTEQGYRVIALASRTLSI-E--DYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKEL  358 (523)
Q Consensus       287 -----~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~-~--~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~L  358 (523)
                           ...++.+.+...+++++|+|++++|+++.+. .  .....+..++...|+||+|+|++++.||+|+++++||+.|
T Consensus       517 ~~pLt~~~re~il~~~~~~g~~gLRvLalA~~~~~~~~~~~~~l~~~s~~~~~E~~LtFvGlVGi~DPPR~ev~~ai~~c  596 (972)
T KOG0202|consen  517 KVPLTQASRETILANVYEMGSEGLRVLALASKDSPGQVPDDQDLNDTSNRATAESDLTFVGLVGILDPPRPEVADAIELC  596 (972)
T ss_pred             eeeCcHHHHHHHHHHHHHHhhccceEEEEEccCCcccChhhhhhcccccccccccceEEEEEeeccCCCchhHHHHHHHH
Confidence                 0234667778889999999999999998763 2  1222233467789999999999999999999999999999


Q ss_pred             HhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCC
Q psy78           359 KDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSS  438 (523)
Q Consensus       359 k~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  438 (523)
                      +++||+|.|+|||+..||.+|++++|+...+..+                                              
T Consensus       597 ~~aGIrV~mITGD~~~TA~AI~r~iGi~~~~ed~----------------------------------------------  630 (972)
T KOG0202|consen  597 RQAGIRVIMITGDNKETAEAIAREIGIFSEDEDV----------------------------------------------  630 (972)
T ss_pred             HHcCCEEEEEcCCCHHHHHHHHHHhCCCcCCccc----------------------------------------------
Confidence            9999999999999999999999999986433210                                              


Q ss_pred             CceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEeccc
Q psy78           439 GAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA  518 (523)
Q Consensus       439 ~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna  518 (523)
                        ....++|.+++.+.+   +..........+|+|++|.+|..+|+.|++.++.|+|.|||.||+|+||.||+|||||..
T Consensus       631 --~~~~~TG~efD~ls~---~~~~~~~~~~~vFaR~~P~HK~kIVeaLq~~geivAMTGDGVNDApALK~AdIGIAMG~~  705 (972)
T KOG0202|consen  631 --SSMALTGSEFDDLSD---EELDDAVRRVLVFARAEPQHKLKIVEALQSRGEVVAMTGDGVNDAPALKKADIGIAMGIS  705 (972)
T ss_pred             --cccccchhhhhcCCH---HHHHHHhhcceEEEecCchhHHHHHHHHHhcCCEEEecCCCccchhhhhhcccceeecCC
Confidence              011234554443322   223334455679999999999999999999999999999999999999999999999966


Q ss_pred             CCCCC
Q psy78           519 ESPID  523 (523)
Q Consensus       519 ~~~va  523 (523)
                      ..+||
T Consensus       706 GTdVa  710 (972)
T KOG0202|consen  706 GTDVA  710 (972)
T ss_pred             ccHhh
Confidence            66654

>KOG0209|consensus

Probab=100.00  E-value=2.1e-38  Score=326.42  Aligned_cols=314  Identities=33%  Similarity=0.566  Sum_probs=247.9

Q ss_pred             HhccCCCCCCCCCCCCCcceeecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeee
Q psy78           160 ELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVG  239 (523)
Q Consensus       160 ~~~~~~~wp~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~  239 (523)
                      -.+..+-|-.-+++|.        ++-.+.++-+.-||+..+|+.||+.+++++..++..|+|.                
T Consensus       408 iaAa~Yvwv~Gskd~~--------RsrYKL~LeC~LIlTSVvPpELPmELSmAVNsSL~ALak~----------------  463 (1160)
T KOG0209|consen  408 IAAAGYVWVEGSKDPT--------RSRYKLFLECTLILTSVVPPELPMELSMAVNSSLIALAKL----------------  463 (1160)
T ss_pred             HHhhheEEEecccCcc--------hhhhheeeeeeEEEeccCCCCCchhhhHHHHHHHHHHHHh----------------
Confidence            3456677877777763        4556778889999999999999999999999999999999                


Q ss_pred             hhhhhhhccccceeeecCCccccCCceeEEeecc----------------------------------------------
Q psy78           240 KLYALTRLKKYNISCINSRVINVSGSINCVCFDK----------------------------------------------  273 (523)
Q Consensus       240 ~~~~~~~~~~~~il~~~~~~~~~~~~v~~v~fDK----------------------------------------------  273 (523)
                                 ||+|..|-++.-+|+++.+||||                                              
T Consensus       464 -----------~vyCTEPFRIPfAGkvdvCCFDKTGTLT~d~lvv~Gvag~~~~~~~~~~~s~~p~~t~~vlAscHsLv~  532 (1160)
T KOG0209|consen  464 -----------GVYCTEPFRIPFAGKVDVCCFDKTGTLTEDDLVVEGVAGLSADEGALTPASKAPNETVLVLASCHSLVL  532 (1160)
T ss_pred             -----------ceeecCccccccCCceeEEEecCCCccccccEEEEecccccCCcccccchhhCCchHHHHHHHHHHHHH
Confidence                       99999999999999999999999                                              


Q ss_pred             -------------ccccccccccCCC------------------------------------------------------
Q psy78           274 -------------MFESTGWTLEEPM------------------------------------------------------  286 (523)
Q Consensus       274 -------------~~~~~~~~~~~~~------------------------------------------------------  286 (523)
                                   .++..+|.++..+                                                      
T Consensus       533 le~~lVGDPlEKA~l~~v~W~~~k~~~v~p~~~~~~~lkI~~ryhFsSaLKRmsvva~~~~~g~s~k~~~aVKGAPEvi~  612 (1160)
T KOG0209|consen  533 LEDKLVGDPLEKATLEAVGWNLEKKNSVCPREGNGKKLKIIQRYHFSSALKRMSVVASHQGPGSSEKYFVAVKGAPEVIQ  612 (1160)
T ss_pred             hcCcccCChHHHHHHHhcCcccccCcccCCCcCCCcccchhhhhhHHHHHHHHHhhhhcccCCCceEEEEEecCCHHHHH
Confidence                         2333444433221                                                      


Q ss_pred             ---CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC
Q psy78           287 ---KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV  363 (523)
Q Consensus       287 ---~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi  363 (523)
                         +++|.++++...+++++|.||+++|+|++..-........+|+.+|+||+|.|++.+..|++++++++|++|++++|
T Consensus       613 ~ml~dvP~dY~~iYk~ytR~GsRVLALg~K~l~~~~~~q~rd~~Re~vEsdLtFaGFlif~CPlK~Ds~~~I~el~~SSH  692 (1160)
T KOG0209|consen  613 EMLRDVPKDYDEIYKRYTRQGSRVLALGYKPLGDMMVSQVRDLKREDVESDLTFAGFLIFSCPLKPDSKKTIKELNNSSH  692 (1160)
T ss_pred             HHHHhCchhHHHHHHHHhhccceEEEEecccccccchhhhhhhhhhhhhhcceeeeeEEEeCCCCccHHHHHHHHhccCc
Confidence               16788999999999999999999999999743333333478999999999999999999999999999999999999


Q ss_pred             cEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEE
Q psy78           364 KVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKF  443 (523)
Q Consensus       364 ~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  443 (523)
                      +++|+|||++.||..+|+++||......++...+    ..++.++.|...+.......      .+..... .-...+.+
T Consensus       693 ~vvMITGDnpLTAchVak~v~iv~k~~~vl~~~~----~~~~~~~~w~s~d~t~~lp~------~p~~~~~-~l~~~~dl  761 (1160)
T KOG0209|consen  693 RVVMITGDNPLTACHVAKEVGIVEKPTLVLDLPE----EGDGNQLEWVSVDGTIVLPL------KPGKKKT-LLAETHDL  761 (1160)
T ss_pred             eEEEEeCCCccchheehheeeeeccCceeeccCc----cCCCceeeEecCCCceeecC------CCCccch-hhhhhhhh
Confidence            9999999999999999999999754444443322    22344556655443221110      0000000 12234668


Q ss_pred             EEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           444 AVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       444 ~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +++|..++.+.+..  ....+.....+|+|+.|+||..+|..+++.|..++|+|||.||+.+||+||||||.-|+.++
T Consensus       762 citG~~l~~l~~~~--~l~~l~~hv~VfARvaP~QKE~ii~tlK~~Gy~TLMCGDGTNDVGALK~AhVGVALL~~~~e  837 (1160)
T KOG0209|consen  762 CITGSALDHLQATD--QLRRLIPHVWVFARVAPKQKEFIITTLKKLGYVTLMCGDGTNDVGALKQAHVGVALLNNPEE  837 (1160)
T ss_pred             hcchhHHHHHhhhH--HHHHhhhheeEEEeeChhhHHHHHHHHHhcCeEEEEecCCCcchhhhhhcccceehhcCChh
Confidence            89999998887643  44555556689999999999999999999999999999999999999999999999888763

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=100.00  E-value=1.8e-38  Score=354.95  Aligned_cols=280  Identities=20%  Similarity=0.301  Sum_probs=202.2

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~  242 (523)
                      .+.++.+++.+++++++++||||||+++|++++.|+.+|+|+|++                |+++   +|+|+|+|.+++
T Consensus       312 ~~~~~~~~l~~aisl~V~~~Pe~Lp~~vt~~La~g~~~mak~~ilVk~l~avE~Lg~v~vIc~DKTGTLT~~~m~V~~~~  391 (903)
T PRK15122        312 TKGDWLEALLFALAVAVGLTPEMLPMIVSSNLAKGAIAMARRKVVVKRLNAIQNFGAMDVLCTDKTGTLTQDRIILEHHL  391 (903)
T ss_pred             ccCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHcCCeecccchhhhhcCCcEEEecCCcccccCeEEEEEEE
Confidence            456889999999999999999999999999999999999999973                4444   899999998876


Q ss_pred             hhh-----hccccceee-------ecCC---------------ccccCCceeEEeecccccc--------cc-c-cc--c
Q psy78           243 ALT-----RLKKYNISC-------INSR---------------VINVSGSINCVCFDKMFES--------TG-W-TL--E  283 (523)
Q Consensus       243 ~~~-----~~~~~~il~-------~~~~---------------~~~~~~~v~~v~fDK~~~~--------~~-~-~~--~  283 (523)
                      ..+     ++.+...+.       .++-               ..+...+++.+.||...+.        .+ . ..  .
T Consensus       392 ~~~~~~~~~~l~~a~l~s~~~~~~~~p~e~All~~a~~~~~~~~~~~~~~~~~~pF~s~~k~ms~v~~~~~~~~~~~~KG  471 (903)
T PRK15122        392 DVSGRKDERVLQLAWLNSFHQSGMKNLMDQAVVAFAEGNPEIVKPAGYRKVDELPFDFVRRRLSVVVEDAQGQHLLICKG  471 (903)
T ss_pred             cCCCCChHHHHHHHHHhCCCCCCCCChHHHHHHHHHHHcCchhhhhcCceEEEeeeCCCcCEEEEEEEcCCCcEEEEECC
Confidence            421     111111100       0000               0011234555566641110        00 0 00  0


Q ss_pred             CC-------------C------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeec
Q psy78           284 EP-------------M------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILE  344 (523)
Q Consensus       284 ~~-------------~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~  344 (523)
                      .+             .      .+.++.+.+..++++++|+|++++|+|+++.++...   ..++..|+|++|+|+++++
T Consensus       472 a~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~~---~~~~~~e~~l~~lGli~l~  548 (903)
T PRK15122        472 AVEEMLAVATHVRDGDTVRPLDEARRERLLALAEAYNADGFRVLLVATREIPGGESRA---QYSTADERDLVIRGFLTFL  548 (903)
T ss_pred             cHHHHHHhchhhhcCCCeecCCHHHHHHHHHHHHHHHhCCCEEEEEEEeccCcccccc---ccccccccCcEEEEEEecc
Confidence            00             0      011234566778899999999999999886432110   1223457899999999999


Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      |++||+++++|++|+++||+++|+|||++.+|..+|+++||..  +.+                                
T Consensus       549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~aIA~~lGI~~--~~v--------------------------------  594 (903)
T PRK15122        549 DPPKESAAPAIAALRENGVAVKVLTGDNPIVTAKICREVGLEP--GEP--------------------------------  594 (903)
T ss_pred             CccHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC--CCc--------------------------------
Confidence            9999999999999999999999999999999999999999952  111                                


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                          ++|.+++.+.   .+.+.+...+..+++|++|+||..+|+.|++.|+.|+|+|||.||+|
T Consensus       595 --------------------i~G~el~~~~---~~el~~~v~~~~VfAr~sPe~K~~iV~~Lq~~G~vVamtGDGvNDaP  651 (903)
T PRK15122        595 --------------------LLGTEIEAMD---DAALAREVEERTVFAKLTPLQKSRVLKALQANGHTVGFLGDGINDAP  651 (903)
T ss_pred             --------------------cchHhhhhCC---HHHHHHHhhhCCEEEEeCHHHHHHHHHHHHhCCCEEEEECCCchhHH
Confidence                                2233332221   12344445556799999999999999999999999999999999999


Q ss_pred             HHHhCCccEEecccCCCC
Q psy78           505 ALRAAHAGISLSEAESPI  522 (523)
Q Consensus       505 MLk~A~vGIAMgna~~~v  522 (523)
                      +|++||+|||||++ .++
T Consensus       652 ALk~ADVGIAmg~g-tdv  668 (903)
T PRK15122        652 ALRDADVGISVDSG-ADI  668 (903)
T ss_pred             HHHhCCEEEEeCcc-cHH
Confidence            99999999999964 443

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=100.00  E-value=1.6e-38  Score=354.83  Aligned_cols=276  Identities=25%  Similarity=0.329  Sum_probs=194.7

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~  242 (523)
                      .+.++.+++.+++++++++||||||+++|++++.|+.+|+|+|++                |+++   +|+|+|+|++.+
T Consensus       314 ~~~~~~~~l~~alsv~V~~~Pe~LP~~vt~~la~g~~~mak~~ilVk~l~aiE~lg~v~vic~DKTGTLT~n~m~V~~~~  393 (902)
T PRK10517        314 TKGDWWEAALFALSVAVGLTPEMLPMIVTSTLARGAVKLSKQKVIVKRLDAIQNFGAMDILCTDKTGTLTQDKIVLENHT  393 (902)
T ss_pred             hcCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHhCCcEEecchhhhhccCCCEEEecCCCccccceEEEEEEe
Confidence            456788999999999999999999999999999999999999763                4444   788888877653


Q ss_pred             hh-----hhccccceee-------ecC---------------CccccCCceeEEeecccccccc--cc--------c--c
Q psy78           243 AL-----TRLKKYNISC-------INS---------------RVINVSGSINCVCFDKMFESTG--WT--------L--E  283 (523)
Q Consensus       243 ~~-----~~~~~~~il~-------~~~---------------~~~~~~~~v~~v~fDK~~~~~~--~~--------~--~  283 (523)
                      ..     +++.+...+.       .|+               ...+...+++.+.||...+...  ..        .  .
T Consensus       394 ~~~~~~~~~ll~~a~l~~~~~~~~~~p~d~All~~a~~~~~~~~~~~~~~~~~~pFds~~k~msvvv~~~~~~~~~~~KG  473 (902)
T PRK10517        394 DISGKTSERVLHSAWLNSHYQTGLKNLLDTAVLEGVDEESARSLASRWQKIDEIPFDFERRRMSVVVAENTEHHQLICKG  473 (902)
T ss_pred             cCCCCCHHHHHHHHHhcCCcCCCCCCHHHHHHHHHHHhcchhhhhhcCceEEEeeeCCCcceEEEEEEECCCeEEEEEeC
Confidence            21     1111100000       000               0001112333444444110000  00        0  0


Q ss_pred             CC-------------C------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeec
Q psy78           284 EP-------------M------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILE  344 (523)
Q Consensus       284 ~~-------------~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~  344 (523)
                      .+             +      ++..+.+.+..++++++|+|++++|+|+++.+...    ..+ ..|+|++++|+++++
T Consensus       474 a~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~k~~~~~~~~----~~~-~~e~~l~~lGli~~~  548 (902)
T PRK10517        474 ALEEILNVCSQVRHNGEIVPLDDIMLRRIKRVTDTLNRQGLRVVAVATKYLPAREGD----YQR-ADESDLILEGYIAFL  548 (902)
T ss_pred             chHHHHHhchhhhcCCCeecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCccccc----ccc-ccccCceeeehHhhh
Confidence            00             0      01123455667889999999999999988643211    111 237899999999999


Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      |++||+++++|++|+++|++++|+|||++.+|..+|+++||+.  +.+                                
T Consensus       549 Dp~R~~a~~aI~~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~--~~v--------------------------------  594 (902)
T PRK10517        549 DPPKETTAPALKALKASGVTVKILTGDSELVAAKVCHEVGLDA--GEV--------------------------------  594 (902)
T ss_pred             CcchhhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCc--cCc--------------------------------
Confidence            9999999999999999999999999999999999999999952  111                                


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                          ++|.+++.+.   .+.+.....+..+++|++|+||.++|+.+++.|+.|+|+|||.||+|
T Consensus       595 --------------------~~G~el~~l~---~~el~~~~~~~~VfAr~sPe~K~~IV~~Lq~~G~vVam~GDGvNDaP  651 (902)
T PRK10517        595 --------------------LIGSDIETLS---DDELANLAERTTLFARLTPMHKERIVTLLKREGHVVGFMGDGINDAP  651 (902)
T ss_pred             --------------------eeHHHHHhCC---HHHHHHHHhhCcEEEEcCHHHHHHHHHHHHHCCCEEEEECCCcchHH
Confidence                                2233322221   12334445556799999999999999999999999999999999999


Q ss_pred             HHHhCCccEEecccC
Q psy78           505 ALRAAHAGISLSEAE  519 (523)
Q Consensus       505 MLk~A~vGIAMgna~  519 (523)
                      +|++||+|||||++.
T Consensus       652 ALk~ADVGIAmg~gt  666 (902)
T PRK10517        652 ALRAADIGISVDGAV  666 (902)
T ss_pred             HHHhCCEEEEeCCcC
Confidence            999999999999653

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=100.00  E-value=1.1e-37  Score=348.25  Aligned_cols=275  Identities=24%  Similarity=0.291  Sum_probs=193.1

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~  242 (523)
                      .+.++.+++.+++++++++||||||+++|++++.|+.||+|+|++                |+++   +|+|+|+|.+++
T Consensus       279 ~~~~~~~~~~~al~l~v~~iP~~Lp~~vt~~la~g~~~mak~~ilvk~l~aiE~lg~v~vic~DKTGTLT~~~m~v~~~~  358 (867)
T TIGR01524       279 MKGDWLEAFLFALAVAVGLTPEMLPMIVSSNLAKGAINMSKKKVIVKELSAIQNFGAMDILCTDKTGTLTQDKIELEKHI  358 (867)
T ss_pred             hcCCHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHhCCcEEccchhhhhccCccEEEecCCCccccCeEEEEEEe
Confidence            456788999999999999999999999999999999999999763                3333   677777777664


Q ss_pred             hh-----hhccccceee-------ecCC--cc-------------ccCCceeEEeeccccccccccccC-----------
Q psy78           243 AL-----TRLKKYNISC-------INSR--VI-------------NVSGSINCVCFDKMFESTGWTLEE-----------  284 (523)
Q Consensus       243 ~~-----~~~~~~~il~-------~~~~--~~-------------~~~~~v~~v~fDK~~~~~~~~~~~-----------  284 (523)
                      ..     +++.....+.       .++-  ++             ....+++.+.||...+......++           
T Consensus       359 ~~~~~~~~~~l~~a~l~~~~~~~~~~p~~~Al~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~ms~~v~~~~~~~~~~~KG  438 (867)
T TIGR01524       359 DSSGETSERVLKMAWLNSYFQTGWKNVLDHAVLAKLDESAARQTASRWKKVDEIPFDFDRRRLSVVVENRAEVTRLICKG  438 (867)
T ss_pred             cCCCCCHHHHHHHHHHhCCCCCCCCChHHHHHHHHHHhhchhhHhhcCceEEEeccCCCcCEEEEEEEcCCceEEEEEeC
Confidence            21     1111100000       0000  00             011122333443310000000000           


Q ss_pred             --------------CC------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeec
Q psy78           285 --------------PM------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILE  344 (523)
Q Consensus       285 --------------~~------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~  344 (523)
                                    .+      ++.++++.+..++++++|+|++++|+|+++.++..    .. +..|+|++++|+++++
T Consensus       439 a~e~il~~c~~~~~~~~~~~l~~~~~~~i~~~~~~~a~~G~rvlavA~~~~~~~~~~----~~-~~~e~~l~~lGli~l~  513 (867)
T TIGR01524       439 AVEEMLTVCTHKRFGGAVVTLSESEKSELQDMTAEMNRQGIRVIAVATKTLKVGEAD----FT-KTDEEQLIIEGFLGFL  513 (867)
T ss_pred             cHHHHHHhchhhhcCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEEEeccCccccc----cc-ccccCCcEEEEEEEee
Confidence                          00      01134566677889999999999999988653211    11 1237899999999999


Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      |++|++++++|++|+++||+++|+|||+..+|..+|+++|+...  .+                                
T Consensus       514 Dp~R~~~~~aI~~l~~aGI~vvmiTGD~~~tA~aIA~~lGI~~~--~v--------------------------------  559 (867)
T TIGR01524       514 DPPKESTKEAIAALFKNGINVKVLTGDNEIVTARICQEVGIDAN--DF--------------------------------  559 (867)
T ss_pred             CCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCC--Ce--------------------------------
Confidence            99999999999999999999999999999999999999999631  11                                


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                          ++|.+++.+.   .+.+.+...+..+++|++|+||.++|+.+|+.|+.|+|+|||.||+|
T Consensus       560 --------------------~~g~~l~~~~---~~el~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~vVam~GDGvNDap  616 (867)
T TIGR01524       560 --------------------LLGADIEELS---DEELARELRKYHIFARLTPMQKSRIIGLLKKAGHTVGFLGDGINDAP  616 (867)
T ss_pred             --------------------eecHhhhhCC---HHHHHHHhhhCeEEEECCHHHHHHHHHHHHhCCCEEEEECCCcccHH
Confidence                                1222222111   12333445556799999999999999999999999999999999999


Q ss_pred             HHHhCCccEEeccc
Q psy78           505 ALRAAHAGISLSEA  518 (523)
Q Consensus       505 MLk~A~vGIAMgna  518 (523)
                      ||+.||+|||||+|
T Consensus       617 ALk~AdVGIAmg~g  630 (867)
T TIGR01524       617 ALRKADVGISVDTA  630 (867)
T ss_pred             HHHhCCEEEEeCCc
Confidence            99999999999965

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=100.00  E-value=1.3e-37  Score=351.64  Aligned_cols=277  Identities=27%  Similarity=0.403  Sum_probs=197.9

Q ss_pred             chHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhhhhh
Q psy78           185 SLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLYALT  245 (523)
Q Consensus       185 ~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~~~~  245 (523)
                      ++.+++.+++++++++||||||+++|++++.|+.+|+|+|++                |+++   +|+|+|+|.+++..+
T Consensus       322 ~~~~~~~~al~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk~l~a~E~lg~v~~Ic~DKTGTLT~n~m~v~~~~~~~  401 (941)
T TIGR01517       322 TFLDHFIIAVTIVVVAVPEGLPLAVTIALAYSMKKMMKDNNLVRHLAACETMGSATAICSDKTGTLTQNVMSVVQGYIGE  401 (941)
T ss_pred             HHHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHhCCCEEechHHhhhccCceEEEEcCcCceeeceEEEEEEEEec
Confidence            578899999999999999999999999999999999999874                4444   899999998887543


Q ss_pred             hc-----------------cccceeeecCCcc---------------c-----c--------------CCceeEEeeccc
Q psy78           246 RL-----------------KKYNISCINSRVI---------------N-----V--------------SGSINCVCFDKM  274 (523)
Q Consensus       246 ~~-----------------~~~~il~~~~~~~---------------~-----~--------------~~~v~~v~fDK~  274 (523)
                      ..                 ....+.|.+....               |     .              ...+..+-||..
T Consensus       402 ~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~~~~~~~~~~~~pF~s~  481 (941)
T TIGR01517       402 QRFNVRDVLRNVPKHVRNILVEGISLNSSSEEVVDRGGKRAFIGSKTECALLGFLLLLGRDYQEVRAEEKVVKIYPFNSE  481 (941)
T ss_pred             ceEecCcccccCCHHHHHHHHHHHHhCCCCccccCCCCccccCCCccHHHHHHHHHHcCCCHHHHHhhchhccccccCCC
Confidence            11                 0000111110000               0     0              001122233320


Q ss_pred             ccc--c------c-ccc---cCC--------------CC-----cchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHh
Q psy78           275 FES--T------G-WTL---EEP--------------MK-----FVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHL  323 (523)
Q Consensus       275 ~~~--~------~-~~~---~~~--------------~~-----~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~  323 (523)
                      .+.  +      + ...   ..+              ..     +.++++.+.+++++++|+|++++|+|.++.+...  
T Consensus       482 ~k~msvv~~~~~~~~~~~~KGA~e~il~~c~~~~~~~g~~~~~~~~~~~i~~~~~~~a~~G~Rvl~~A~~~~~~~~~~--  559 (941)
T TIGR01517       482 RKFMSVVVKHSGGKVREFRKGASEIVLKPCRKRLDSNGEATPISDDKDRCADVIEPLASDALRTICLAYRDFAPEEFP--  559 (941)
T ss_pred             CCeEEEEEEeCCCcEEEEEECChHHHHHhhhHHhhcCCCcccCcHHHHHHHHHHHHHHhcCCEEEEEEEEecCccccc--
Confidence            000  0      0 000   000              00     0134567778899999999999999998643211  


Q ss_pred             hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCC
Q psy78           324 NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLK  403 (523)
Q Consensus       324 ~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~  403 (523)
                         ..+..|+|++|+|+++++|++|++++++|++||++|++++|+|||++.+|..+|+++|+..++..            
T Consensus       560 ---~~~~~e~~l~~lGli~~~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~iA~~~GI~~~~~~------------  624 (941)
T TIGR01517       560 ---RKDYPNGGLTLIGVVGIKDPLRPGVREAVQECQRAGITVRMVTGDNIDTAKAIARNCGILTFGGL------------  624 (941)
T ss_pred             ---cccccccCcEEEEEeeccCCCchhHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCCCCce------------
Confidence               12234789999999999999999999999999999999999999999999999999999753322            


Q ss_pred             CCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHH
Q psy78           404 ECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLV  483 (523)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i  483 (523)
                                                              +++|++++.+.   .+.+.....+..+++|++|+||..+|
T Consensus       625 ----------------------------------------vi~G~~~~~l~---~~el~~~i~~~~Vfar~sPe~K~~iV  661 (941)
T TIGR01517       625 ----------------------------------------AMEGKEFRRLV---YEEMDPILPKLRVLARSSPLDKQLLV  661 (941)
T ss_pred             ----------------------------------------EeeHHHhhhCC---HHHHHHHhccCeEEEECCHHHHHHHH
Confidence                                                    22333332221   12334445566899999999999999


Q ss_pred             HHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           484 LELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       484 ~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +.+++.|+.|+|+|||.||+|||++||+|||||.+..+
T Consensus       662 ~~lq~~g~vVam~GDGvNDapALk~AdVGIAmg~~gtd  699 (941)
T TIGR01517       662 LMLKDMGEVVAVTGDGTNDAPALKLADVGFSMGISGTE  699 (941)
T ss_pred             HHHHHCCCEEEEECCCCchHHHHHhCCcceecCCCccH
Confidence            99999999999999999999999999999999944343

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=100.00  E-value=1.1e-36  Score=345.01  Aligned_cols=310  Identities=26%  Similarity=0.316  Sum_probs=212.7

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~  242 (523)
                      .+.++.+++.+++++++++||||||+++|++++.++.+|+|+|++                |+++   +|+|+|+|.++|
T Consensus       287 ~~~~~~~~~~~~i~v~v~~iP~~L~~~v~i~l~~~~~~m~~~~ilvk~~~aiE~lg~v~~ic~DKTGTLT~n~m~v~~~~  366 (997)
T TIGR01106       287 LGYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW  366 (997)
T ss_pred             hcCCHHHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHHCCcEecCcHHHHHhcCCCEEEECCCCceecCceEEEEEE
Confidence            567888999999999999999999999999999999999999984                4444   899999999988


Q ss_pred             hhhhc------------------------cccceeeecCC------c------------c-------------------c
Q psy78           243 ALTRL------------------------KKYNISCINSR------V------------I-------------------N  261 (523)
Q Consensus       243 ~~~~~------------------------~~~~il~~~~~------~------------~-------------------~  261 (523)
                      ..+..                        .....+|.+..      .            .                   +
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~alcn~~~~~~~~~~~~~~~~~~~gdp~E~ALl~~a~~~~~~~~~~~~  446 (997)
T TIGR01106       367 FDNQIHEADTTEDQSGVSFDKSSATWLALSRIAGLCNRAVFKAGQENVPILKRAVAGDASESALLKCIELCLGSVMEMRE  446 (997)
T ss_pred             ECCeEEecCCccCCCCccCCcccHHHHHHHHHHHHcCCCeeccccCCCcccccccCcChHHHHHHHHHHHhCCCHHHHHh
Confidence            53321                        11112232110      0            0                   0


Q ss_pred             cCCceeEEeecccccc--c--------c--ccc---cCCC-------------------CcchhHHHHHHHHHhhccCeE
Q psy78           262 VSGSINCVCFDKMFES--T--------G--WTL---EEPM-------------------KFVPENIVSVLSEYTEQGYRV  307 (523)
Q Consensus       262 ~~~~v~~v~fDK~~~~--~--------~--~~~---~~~~-------------------~~~~~~~~~~~~~~~~~G~r~  307 (523)
                      ...++..+.||...+.  +        +  ..+   ..++                   .+.++.+.+.+++++++|+|+
T Consensus       447 ~~~~v~~~pF~s~rK~m~~v~~~~~~~~~~~~~~~KGApe~Il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~GlRv  526 (997)
T TIGR01106       447 RNPKVVEIPFNSTNKYQLSIHENEDPRDPRHLLVMKGAPERILERCSSILIHGKEQPLDEELKEAFQNAYLELGGLGERV  526 (997)
T ss_pred             hCceeEEeccCCCCceEEEEEeccCCCCceEEEEEeCChHHHHHHhhHHhcCCCcccCCHHHHHHHHHHHHHHHhcCCEE
Confidence            1112333445441110  0        0  000   0000                   012345677788899999999


Q ss_pred             EEEEEecCCchhHHHhhhcch---hhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcC
Q psy78           308 IALASRTLSIEDYKHLNYMKR---EDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG  384 (523)
Q Consensus       308 l~~a~k~l~~~~~~~~~~~~~---~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lg  384 (523)
                      +++|+|.++.+........++   +..|+|++|+|+++++||+|++++++|++|+++|++++|+|||++.+|.++++++|
T Consensus       527 la~A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGli~i~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~~~ta~~ia~~~g  606 (997)
T TIGR01106       527 LGFCHLYLPDEQFPEGFQFDTDDVNFPTDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG  606 (997)
T ss_pred             EEEEEeecCcccccccccccchhhhccccCcEEEEEEeccCCChHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcC
Confidence            999999986532111000111   23489999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhh
Q psy78           385 IIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRI  464 (523)
Q Consensus       385 i~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~  464 (523)
                      +..++....       .+               +..   ......   +..........+++|++++.+.+   +.+.+.
T Consensus       607 i~~~~~~~~-------~~---------------i~~---~~~~~~---~~~~~~~~~~~vi~G~~l~~l~~---~el~~~  655 (997)
T TIGR01106       607 IISEGNETV-------ED---------------IAA---RLNIPV---SQVNPRDAKACVVHGSDLKDMTS---EQLDEI  655 (997)
T ss_pred             CCCCCccch-------hh---------------hhh---hccccc---cccccccccceEEEhHHhhhCCH---HHHHHH
Confidence            975432210       00               000   000000   00000111236788888776543   233444


Q ss_pred             hccc--EEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           465 IVKG--AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       465 ~~~~--~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ..+.  .+++|++|+||..+|+.+++.|+.|+|+|||.||+|||+.||+|||||++..++
T Consensus       656 ~~~~~~~VfaR~sPeqK~~IV~~lq~~g~vv~~~GDG~ND~paLk~AdVGiamg~~G~~v  715 (997)
T TIGR01106       656 LKYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDV  715 (997)
T ss_pred             HHhcCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHhhCCcceecCCcccHH
Confidence            4332  499999999999999999999999999999999999999999999999765554

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=100.00  E-value=1.1e-36  Score=336.14  Aligned_cols=270  Identities=24%  Similarity=0.356  Sum_probs=189.0

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~  242 (523)
                      .+.++.+++.+++++++++||||||+++|++++.|+.||+|+|++                |+++   +|+|+|+|.+++
T Consensus       229 ~~~~~~~~~~~~i~vlv~a~P~~Lp~~~~~~la~g~~r~ak~gilvk~l~alE~lg~v~~i~~DKTGTLT~~~~~v~~~~  308 (755)
T TIGR01647       229 RGESFREGLQFALVLLVGGIPIAMPAVLSVTMAVGAAELAKKKAIVTRLTAIEELAGMDILCSDKTGTLTLNKLSIDEIL  308 (755)
T ss_pred             cCCCHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHhCCeEEcccHHHHhccCCcEEEecCCCccccCceEEEEEE
Confidence            567889999999999999999999999999999999999999763                3443   677777777776


Q ss_pred             hhhh------ccccceeee---cCCc----c-----------ccCCceeEEeecccccc--cccc---------c--cCC
Q psy78           243 ALTR------LKKYNISCI---NSRV----I-----------NVSGSINCVCFDKMFES--TGWT---------L--EEP  285 (523)
Q Consensus       243 ~~~~------~~~~~il~~---~~~~----~-----------~~~~~v~~v~fDK~~~~--~~~~---------~--~~~  285 (523)
                      ..+.      +.....++.   +.+.    +           +....++...||...+.  +.+.         .  ..+
T Consensus       309 ~~~~~~~~~~~l~~a~~~~~~~~~~pi~~Ai~~~~~~~~~~~~~~~~~~~~pf~~~~k~~~~~v~~~~~g~~~~~~kGa~  388 (755)
T TIGR01647       309 PFFNGFDKDDVLLYAALASREEDQDAIDTAVLGSAKDLKEARDGYKVLEFVPFDPVDKRTEATVEDPETGKRFKVTKGAP  388 (755)
T ss_pred             ecCCCCCHHHHHHHHHHhCCCCCCChHHHHHHHHHHHhHHHHhcCceEEEeccCCCCCeEEEEEEeCCCceEEEEEeCCh
Confidence            4321      111111111   0000    0           00112233334320000  0000         0  000


Q ss_pred             C---------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHH
Q psy78           286 M---------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIK  356 (523)
Q Consensus       286 ~---------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~  356 (523)
                      +         .+.++++.+.+++++++|+|++++|++.                .+++++++|+++++|++||+++++|+
T Consensus       389 e~il~~c~~~~~~~~~~~~~~~~~~~~G~rvl~vA~~~----------------~e~~l~~~Gli~l~Dp~R~~a~~aI~  452 (755)
T TIGR01647       389 QVILDLCDNKKEIEEKVEEKVDELASRGYRALGVARTD----------------EEGRWHFLGLLPLFDPPRHDTKETIE  452 (755)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHHhCCCEEEEEEEEc----------------CCCCcEEEEEeeccCCChhhHHHHHH
Confidence            0         0123456667788999999999999872                14689999999999999999999999


Q ss_pred             HHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhcc
Q psy78           357 ELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGL  436 (523)
Q Consensus       357 ~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (523)
                      +||++|++++|+|||++.+|..+|+++||..+   ++  .+..                  .                  
T Consensus       453 ~l~~aGI~v~miTGD~~~tA~~IA~~lGI~~~---~~--~~~~------------------l------------------  491 (755)
T TIGR01647       453 RARHLGVEVKMVTGDHLAIAKETARRLGLGTN---IY--TADV------------------L------------------  491 (755)
T ss_pred             HHHHCCCeEEEECCCCHHHHHHHHHHcCCCCC---Cc--CHHH------------------h------------------
Confidence            99999999999999999999999999999631   00  0000                  0                  


Q ss_pred             CCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec
Q psy78           437 SSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS  516 (523)
Q Consensus       437 ~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg  516 (523)
                              .++++.+.   ...+.+.+...+..+++|++|+||..+|+.+++.|+.|+|+|||.||+|+|++||+|||||
T Consensus       492 --------~~~~~~~~---~~~~~~~~~~~~~~vfAr~~Pe~K~~iV~~lq~~G~~VamvGDGvNDapAL~~AdVGIAm~  560 (755)
T TIGR01647       492 --------LKGDNRDD---LPSGELGEMVEDADGFAEVFPEHKYEIVEILQKRGHLVGMTGDGVNDAPALKKADVGIAVA  560 (755)
T ss_pred             --------cCCcchhh---CCHHHHHHHHHhCCEEEecCHHHHHHHHHHHHhcCCEEEEEcCCcccHHHHHhCCeeEEec
Confidence                    00000000   0011233344455799999999999999999999999999999999999999999999999


Q ss_pred             ccC
Q psy78           517 EAE  519 (523)
Q Consensus       517 na~  519 (523)
                      ++.
T Consensus       561 ~gt  563 (755)
T TIGR01647       561 GAT  563 (755)
T ss_pred             CCc
Confidence            753

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=100.00  E-value=1.7e-36  Score=342.85  Aligned_cols=186  Identities=30%  Similarity=0.463  Sum_probs=145.4

Q ss_pred             hHHHHHHHHHhhccCeEEEEEEecCCchhHHH--h--hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEE
Q psy78           291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKH--L--NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVV  366 (523)
Q Consensus       291 ~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~--~--~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vv  366 (523)
                      +.+.+..++++++|+||+++|||.++.++...  .  ...+++.+|+|++|+|+++++|++|++++++|++|+++||+++
T Consensus       587 ~~i~~~~~~~a~~GlRvLa~A~r~l~~~~~~~~~~~~~~~~~~~~e~~L~~~G~~~~~Dp~r~~v~~aI~~l~~aGIkv~  666 (1053)
T TIGR01523       587 ELIIANMESLAAEGLRVLAFASKSFDKADNNDDQLKNETLNRATAESDLEFLGLIGIYDPPRNESAGAVEKCHQAGINVH  666 (1053)
T ss_pred             HHHHHHHHHHHhcCCeEEEEEEEECCchhccchhhhccccchhhhccCCEEEEEEeeecCCchhHHHHHHHHHHCCCEEE
Confidence            45667788999999999999999986532110  0  0123457899999999999999999999999999999999999


Q ss_pred             EEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEe
Q psy78           367 MITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT  446 (523)
Q Consensus       367 i~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  446 (523)
                      |+|||++.+|..+|+++|+..++...   +..                                       ......+++
T Consensus       667 MiTGD~~~tA~~iA~~~Gi~~~~~~~---~~~---------------------------------------~~~~~~vit  704 (1053)
T TIGR01523       667 MLTGDFPETAKAIAQEVGIIPPNFIH---DRD---------------------------------------EIMDSMVMT  704 (1053)
T ss_pred             EECCCCHHHHHHHHHHcCCCCccccc---ccc---------------------------------------ccccceeee
Confidence            99999999999999999996432100   000                                       000124567


Q ss_pred             cccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           447 GKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       447 ~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      |++++.+.+   +.+........+++|++|+||..+|+.+++.++.|+|+|||.||+|||+.||+|||||....+
T Consensus       705 G~~l~~l~~---~~l~~~~~~~~V~ar~sP~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdVGIAmg~~gt~  776 (1053)
T TIGR01523       705 GSQFDALSD---EEVDDLKALCLVIARCAPQTKVKMIEALHRRKAFCAMTGDGVNDSPSLKMANVGIAMGINGSD  776 (1053)
T ss_pred             hHHhhhcCH---HHHHHHhhcCeEEEecCHHHHHHHHHHHHhcCCeeEEeCCCcchHHHHHhCCccEecCCCccH
Confidence            776665432   233444555679999999999999999999999999999999999999999999999954333

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.5e-35  Score=315.87  Aligned_cols=226  Identities=29%  Similarity=0.384  Sum_probs=178.9

Q ss_pred             CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccC
Q psy78           184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVS  263 (523)
Q Consensus       184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~  263 (523)
                      .++..++++++++||++|||||++++|+++..|+.+.+|+                           ||++|+++.+|.+
T Consensus       350 ~~~~~a~~~a~avLVIaCPCALgLAtP~ai~~g~g~aA~~---------------------------GILiK~g~~LE~l  402 (713)
T COG2217         350 GDWETALYRALAVLVIACPCALGLATPTAILVGIGRAARR---------------------------GILIKGGEALERL  402 (713)
T ss_pred             CcHHHHHHHHHhheeeeCccHHHhHHHHHHHHHHHHHHhC---------------------------ceEEeChHHHHhh
Confidence            6788899999999999999999999999999999999999                           9999999999999


Q ss_pred             CceeEEeecc-------cccccccccc--CCC------------Ccch--hHHHH-----------HHHHHhhccCeE--
Q psy78           264 GSINCVCFDK-------MFESTGWTLE--EPM------------KFVP--ENIVS-----------VLSEYTEQGYRV--  307 (523)
Q Consensus       264 ~~v~~v~fDK-------~~~~~~~~~~--~~~------------~~~~--~~~~~-----------~~~~~~~~G~r~--  307 (523)
                      +++++++|||       .++.++....  +..            .+.|  +.+.+           ..++..++|.+-  
T Consensus       403 ~~v~tvvFDKTGTLT~G~p~v~~v~~~~~~e~~~L~laAalE~~S~HPiA~AIv~~a~~~~~~~~~~~~~i~G~Gv~~~v  482 (713)
T COG2217         403 AKVDTVVFDKTGTLTEGKPEVTDVVALDGDEDELLALAAALEQHSEHPLAKAIVKAAAERGLPDVEDFEEIPGRGVEAEV  482 (713)
T ss_pred             ccCCEEEEeCCCCCcCCceEEEEEecCCCCHHHHHHHHHHHHhcCCChHHHHHHHHHHhcCCCCccceeeeccCcEEEEE
Confidence            9999999999       1222221111  000            0111  11111           134455666653  


Q ss_pred             ----EEEEEecCCch-h------HHHhhhcc-----hhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCC
Q psy78           308 ----IALASRTLSIE-D------YKHLNYMK-----REDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGD  371 (523)
Q Consensus       308 ----l~~a~k~l~~~-~------~~~~~~~~-----~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr  371 (523)
                          +.++.+.+-.+ .      ........     ...+..|.+++|++.+.|++|++++++|++||+.|++++|+|||
T Consensus       483 ~g~~v~vG~~~~~~~~~~~~~~~~~~~~~~~~~G~t~v~va~dg~~~g~i~~~D~~R~~a~~aI~~L~~~Gi~~~mLTGD  562 (713)
T COG2217         483 DGERVLVGNARLLGEEGIDLPLLSERIEALESEGKTVVFVAVDGKLVGVIALADELRPDAKEAIAALKALGIKVVMLTGD  562 (713)
T ss_pred             CCEEEEEcCHHHHhhcCCCccchhhhHHHHHhcCCeEEEEEECCEEEEEEEEeCCCChhHHHHHHHHHHCCCeEEEEcCC
Confidence                33333332111 0      00000011     13567889999999999999999999999999999999999999


Q ss_pred             CHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHH
Q psy78           372 NIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWE  451 (523)
Q Consensus       372 ~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~  451 (523)
                      +..+|..+|+++||+                                                                 
T Consensus       563 n~~~A~~iA~~lGId-----------------------------------------------------------------  577 (713)
T COG2217         563 NRRTAEAIAKELGID-----------------------------------------------------------------  577 (713)
T ss_pred             CHHHHHHHHHHcChH-----------------------------------------------------------------
Confidence            999999999999996                                                                 


Q ss_pred             HHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEeccc
Q psy78           452 LIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA  518 (523)
Q Consensus       452 ~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna  518 (523)
                                       .+++++.|++|.+.|+.|++.++.|+|+|||.||.|+|..||+|||||.+
T Consensus       578 -----------------~v~AellPedK~~~V~~l~~~g~~VamVGDGINDAPALA~AdVGiAmG~G  627 (713)
T COG2217         578 -----------------EVRAELLPEDKAEIVRELQAEGRKVAMVGDGINDAPALAAADVGIAMGSG  627 (713)
T ss_pred             -----------------hheccCCcHHHHHHHHHHHhcCCEEEEEeCCchhHHHHhhcCeeEeecCC
Confidence                             47899999999999999999999999999999999999999999999984

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=100.00  E-value=8.6e-35  Score=311.78  Aligned_cols=221  Identities=24%  Similarity=0.383  Sum_probs=163.9

Q ss_pred             HHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeE
Q psy78           189 IVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINC  268 (523)
Q Consensus       189 ~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~  268 (523)
                      ++..+++++|++|||+||.++|+....|+.||+|+                           |+++|+++++|.+|++++
T Consensus       248 ~l~~~iallV~aiP~alg~l~~~i~i~g~~r~ak~---------------------------gvLvk~~~avE~lg~v~~  300 (679)
T PRK01122        248 SITVLVALLVCLIPTTIGGLLSAIGIAGMDRVLQA---------------------------NVIATSGRAVEAAGDVDT  300 (679)
T ss_pred             HHHHHHHHHHHcccchhhhHHHHHHHHHHHHHhcC---------------------------CeeecCchHHHHhcCCCE
Confidence            78889999999999999999999999999999999                           999999999999999999


Q ss_pred             Eeeccc--cc-----ccccc-ccCCC--------------Ccchh--HHHHHHHH------------------Hhh-ccC
Q psy78           269 VCFDKM--FE-----STGWT-LEEPM--------------KFVPE--NIVSVLSE------------------YTE-QGY  305 (523)
Q Consensus       269 v~fDK~--~~-----~~~~~-~~~~~--------------~~~~~--~~~~~~~~------------------~~~-~G~  305 (523)
                      +||||.  .+     .++.. .+..+              ...|.  .+.+..++                  +.+ .|+
T Consensus       301 I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~a~~~s~~s~hP~~~AIv~~a~~~~~~~~~~~~~~~~~~~pF~s~~~~  380 (679)
T PRK01122        301 LLLDKTGTITLGNRQASEFLPVPGVTEEELADAAQLSSLADETPEGRSIVVLAKQRFNLRERDLQSLHATFVPFSAQTRM  380 (679)
T ss_pred             EEEeCCCCCcCCcEEEEEEEeCCCCCHHHHHHHHHHhcCCCCCchHHHHHHHHHhhcCCCchhhccccceeEeecCcCce
Confidence            999991  11     01100 00000              01111  11000000                  000 111


Q ss_pred             -------eEEEEEEecC-----Cc---h-hHHHh---hhc-----chhhhhccceeeeeeeeccCCCcchHHHHHHHHhC
Q psy78           306 -------RVIALASRTL-----SI---E-DYKHL---NYM-----KREDIEKDLEFLGLIILENRLKPQTEGVIKELKDA  361 (523)
Q Consensus       306 -------r~l~~a~k~l-----~~---~-~~~~~---~~~-----~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~  361 (523)
                             +.+..|..+.     ..   + +.+..   ...     ....+..|++++|+++++|++||++++++++||++
T Consensus       381 ~gv~~~g~~~~kGa~e~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~va~~~~~lG~i~l~D~~R~~~~eai~~Lr~~  460 (679)
T PRK01122        381 SGVDLDGREIRKGAVDAIRRYVESNGGHFPAELDAAVDEVARKGGTPLVVAEDNRVLGVIYLKDIVKPGIKERFAELRKM  460 (679)
T ss_pred             EEEEECCEEEEECCHHHHHHHHHhcCCcChHHHHHHHHHHHhCCCcEEEEEECCeEEEEEEEeccCchhHHHHHHHHHHC
Confidence                   1122222110     00   0 00000   000     11134458899999999999999999999999999


Q ss_pred             CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCce
Q psy78           362 RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAY  441 (523)
Q Consensus       362 Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (523)
                      |++++|+|||++.+|..+|+++|++                                                       
T Consensus       461 GI~vvMiTGDn~~TA~aIA~elGId-------------------------------------------------------  485 (679)
T PRK01122        461 GIKTVMITGDNPLTAAAIAAEAGVD-------------------------------------------------------  485 (679)
T ss_pred             CCeEEEECCCCHHHHHHHHHHcCCc-------------------------------------------------------
Confidence            9999999999999999999999996                                                       


Q ss_pred             EEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEeccc
Q psy78           442 KFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA  518 (523)
Q Consensus       442 ~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna  518 (523)
                                                 .++++++|++|..+|+.+|+.|+.|+|+|||.||.|+|++||+|||||++
T Consensus       486 ---------------------------~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGIAMgsG  535 (679)
T PRK01122        486 ---------------------------DFLAEATPEDKLALIRQEQAEGRLVAMTGDGTNDAPALAQADVGVAMNSG  535 (679)
T ss_pred             ---------------------------EEEccCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhCCEeEEeCCC
Confidence                                       47899999999999999999999999999999999999999999999965

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=100.00  E-value=8.8e-35  Score=326.81  Aligned_cols=271  Identities=27%  Similarity=0.419  Sum_probs=199.2

Q ss_pred             ecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehh
Q psy78           181 LRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKL  241 (523)
Q Consensus       181 ~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~  241 (523)
                      +.+.++.+++..++++++++||||||+++|++++.|+.||+|+|++                |+++   +|+|+|+|.++
T Consensus       266 ~~~~~~~~~~~~~v~llv~aiP~~Lp~~vt~~l~~~~~r~ak~~ilvk~~~a~E~Lg~v~~Ic~DKTGTLT~n~m~v~~i  345 (884)
T TIGR01522       266 FQGKDWLEMFTISVSLAVAAIPEGLPIIVTVTLALGVLRMSKKRAIVRKLPSVETLGSVNVICSDKTGTLTKNHMTVTKI  345 (884)
T ss_pred             HhcCCHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhhcCCcccchHHHHhccCccEEEecCccccccCeEEEEEE
Confidence            4567788999999999999999999999999999999999999973                4544   89999999999


Q ss_pred             hhhhhccc---------------------------------cceeeecCC---------------cc-c-----------
Q psy78           242 YALTRLKK---------------------------------YNISCINSR---------------VI-N-----------  261 (523)
Q Consensus       242 ~~~~~~~~---------------------------------~~il~~~~~---------------~~-~-----------  261 (523)
                      |..+....                                 ...+|.+..               ++ +           
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~g~p~e~All~~~~~~~~~~~~  425 (884)
T TIGR01522       346 WTSDGLHTMLNAVSLNQFGEVIVDGDVLHGFYTVAVSRILEAGNLCNNAKFRNEADTLLGNPTDVALIELLMKFGLDDLR  425 (884)
T ss_pred             EecCceEeeccCCccCCCCcccccccccccccCHHHHHHHHHHhhhCCCeecCCCCCcCCChHHHHHHHHHHHcCcHhHH
Confidence            98754210                                 011122110               00 0           


Q ss_pred             -cCCceeEEeeccccc--cccccc-----------cCC--------------C------CcchhHHHHHHHHHhhccCeE
Q psy78           262 -VSGSINCVCFDKMFE--STGWTL-----------EEP--------------M------KFVPENIVSVLSEYTEQGYRV  307 (523)
Q Consensus       262 -~~~~v~~v~fDK~~~--~~~~~~-----------~~~--------------~------~~~~~~~~~~~~~~~~~G~r~  307 (523)
                       ....++.+.||...+  .+....           ..+              .      .+.++.+.+..++++++|+|+
T Consensus       426 ~~~~~~~~~pF~s~~k~m~v~~~~~~~~~~~~~~KGape~il~~c~~~~~~~g~~~~l~~~~~~~i~~~~~~~a~~G~rv  505 (884)
T TIGR01522       426 ETYIRVAEVPFSSERKWMAVKCVHRQDRSEMCFMKGAYEQVLKYCTYYQKKDGKTLTLTQQQRDVIQEEAAEMASAGLRV  505 (884)
T ss_pred             hhCcEEeEeCCCCCCCeEEEEEEEcCCCeEEEEEeCChHHHHHhhhhhhhcCCCeeeCCHHHHHHHHHHHHHHHhcCCEE
Confidence             011233444442000  000000           000              0      011245667778899999999


Q ss_pred             EEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           308 IALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       308 l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      +++|++.+                +.|++++|+++++|++||+++++|++|+++|++++|+|||+..+|..+|+++|++.
T Consensus       506 l~~A~~~~----------------~~~l~~lGli~l~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~~~tA~~ia~~~Gi~~  569 (884)
T TIGR01522       506 IAFASGPE----------------KGQLTFLGLVGINDPPRPGVKEAVTTLITGGVRIIMITGDSQETAVSIARRLGMPS  569 (884)
T ss_pred             EEEEEEcC----------------CCCeEEEEEEeccCcchhHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCCC
Confidence            99999875                25799999999999999999999999999999999999999999999999999975


Q ss_pred             CCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcc
Q psy78           388 PGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVK  467 (523)
Q Consensus       388 ~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~  467 (523)
                      ....+                                                    ++|++++.+.   .+.+.....+
T Consensus       570 ~~~~~----------------------------------------------------v~g~~l~~~~---~~~l~~~~~~  594 (884)
T TIGR01522       570 KTSQS----------------------------------------------------VSGEKLDAMD---DQQLSQIVPK  594 (884)
T ss_pred             CCCce----------------------------------------------------eEhHHhHhCC---HHHHHHHhhc
Confidence            33222                                                    1222222111   1223344455


Q ss_pred             cEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           468 GAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       468 ~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ..+++|++|++|..+++.+++.++.|+|+|||.||++||+.||+|||||+...++
T Consensus       595 ~~Vfar~~P~~K~~iv~~lq~~g~~v~mvGDGvND~pAl~~AdVGia~g~~g~~v  649 (884)
T TIGR01522       595 VAVFARASPEHKMKIVKALQKRGDVVAMTGDGVNDAPALKLADIGVAMGQTGTDV  649 (884)
T ss_pred             CeEEEECCHHHHHHHHHHHHHCCCEEEEECCCcccHHHHHhCCeeEecCCCcCHH
Confidence            6899999999999999999999999999999999999999999999999654443

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=100.00  E-value=8.1e-34  Score=319.77  Aligned_cols=178  Identities=31%  Similarity=0.496  Sum_probs=139.4

Q ss_pred             hHHHHHHHHHhh-ccCeEEEEEEecCCchhHHH--hhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEE
Q psy78           291 ENIVSVLSEYTE-QGYRVIALASRTLSIEDYKH--LNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM  367 (523)
Q Consensus       291 ~~~~~~~~~~~~-~G~r~l~~a~k~l~~~~~~~--~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi  367 (523)
                      +++.+.++++++ +|+||+++|||.++.+....  .....++.+|+|++|+|+++++|++|++++++|++||++|++++|
T Consensus       479 ~~i~~~~~~~a~~~GlRvl~~A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lGl~~~~Dplr~~v~e~I~~l~~aGI~v~m  558 (917)
T TIGR01116       479 NTILSVIKEMGTTKALRCLALAFKDIPDPREEDLLSDPANFEAIESDLTFIGVVGMLDPPRPEVADAIEKCRTAGIRVIM  558 (917)
T ss_pred             HHHHHHHHHHHhhcCCeEEEEEEEECCccccccccccchhhhhhcCCcEEEEEeeeeCCCchhHHHHHHHHHHCCCEEEE
Confidence            456677889999 99999999999986432110  011233567999999999999999999999999999999999999


Q ss_pred             EcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEec
Q psy78           368 ITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTG  447 (523)
Q Consensus       368 ~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  447 (523)
                      +|||+..+|..+|+++|+..++..+..                                                ..++|
T Consensus       559 iTGD~~~tA~~ia~~~gi~~~~~~v~~------------------------------------------------~~~~g  590 (917)
T TIGR01116       559 ITGDNKETAEAICRRIGIFSPDEDVTF------------------------------------------------KSFTG  590 (917)
T ss_pred             ecCCCHHHHHHHHHHcCCCCCCccccc------------------------------------------------eeeeH
Confidence            999999999999999999753322100                                                01222


Q ss_pred             ccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           448 KSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       448 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                      ++++.+.   ++.......+..+++|++|+||..+++.+++.++.|+|+|||.||++||++||+|||||++.
T Consensus       591 ~~l~~~~---~~~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~va~iGDG~ND~~alk~AdVGia~g~g~  659 (917)
T TIGR01116       591 REFDEMG---PAKQRAACRSAVLFSRVEPSHKSELVELLQEQGEIVAMTGDGVNDAPALKKADIGIAMGSGT  659 (917)
T ss_pred             HHHhhCC---HHHHHHhhhcCeEEEecCHHHHHHHHHHHHhcCCeEEEecCCcchHHHHHhCCeeEECCCCc
Confidence            2222211   11222334455799999999999999999999999999999999999999999999999774

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=100.00  E-value=4.9e-34  Score=305.72  Aligned_cols=224  Identities=25%  Similarity=0.357  Sum_probs=164.0

Q ss_pred             HHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCce
Q psy78           187 WDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSI  266 (523)
Q Consensus       187 ~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v  266 (523)
                      ...+..+++++|++|||+||+++|++++.|+.||+|+                           |+++|+++++|.+|++
T Consensus       246 ~~~~~~~val~V~~IP~aL~~~~~~~~~~g~~r~ak~---------------------------gvLvk~~~avE~lg~v  298 (673)
T PRK14010        246 NLSIAMLIALAVCLIPTTIGGLLSAIGIAGMDRVTQF---------------------------NILAKSGRSVETCGDV  298 (673)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhC---------------------------CEEEeCcHHHHHhhCC
Confidence            3456777788888999999999999999999999999                           9999999999999999


Q ss_pred             eEEeeccc--ccc-----cccc-ccCCC--------------CcchhH--HHHHHH--------------HHh----hcc
Q psy78           267 NCVCFDKM--FES-----TGWT-LEEPM--------------KFVPEN--IVSVLS--------------EYT----EQG  304 (523)
Q Consensus       267 ~~v~fDK~--~~~-----~~~~-~~~~~--------------~~~~~~--~~~~~~--------------~~~----~~G  304 (523)
                      +++||||.  .+.     ..+. ....+              ...|..  +.+..+              .+.    ..|
T Consensus       299 ~vI~~DKTGTLT~Gn~~~~~~~~~~~~~~~~ll~~a~~~~~~s~~P~~~AIv~~a~~~~~~~~~~~~~~~pF~~~~k~~g  378 (673)
T PRK14010        299 NVLILDKTGTITYGNRMADAFIPVKSSSFERLVKAAYESSIADDTPEGRSIVKLAYKQHIDLPQEVGEYIPFTAETRMSG  378 (673)
T ss_pred             CEEEEeCCCcCCCCCeEEEEEEeCCCccHHHHHHHHHHhcCCCCChHHHHHHHHHHHcCCCchhhhcceeccccccceeE
Confidence            99999991  110     0010 00000              011110  000000              011    111


Q ss_pred             C----eEEEEEEecCC------------chhHH---H-hhhcch-hhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC
Q psy78           305 Y----RVIALASRTLS------------IEDYK---H-LNYMKR-EDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV  363 (523)
Q Consensus       305 ~----r~l~~a~k~l~------------~~~~~---~-~~~~~~-~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi  363 (523)
                      .    +.+..|..+.-            .+...   . .....+ ..+..|++++|+++++|++||+++++|++||++|+
T Consensus       379 v~~~g~~i~kGa~~~il~~~~~~g~~~~~~~~~~~~~~a~~G~~~l~v~~~~~~lG~i~l~Dp~R~~a~e~I~~Lr~~GI  458 (673)
T PRK14010        379 VKFTTREVYKGAPNSMVKRVKEAGGHIPVDLDALVKGVSKKGGTPLVVLEDNEILGVIYLKDVIKDGLVERFRELREMGI  458 (673)
T ss_pred             EEECCEEEEECCHHHHHHHhhhcCCCCchHHHHHHHHHHhCCCeEEEEEECCEEEEEEEeecCCcHHHHHHHHHHHHCCC
Confidence            1    11112211110            00000   0 000001 12345899999999999999999999999999999


Q ss_pred             cEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEE
Q psy78           364 KVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKF  443 (523)
Q Consensus       364 ~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  443 (523)
                      +++|+|||++.+|..+|+++|++                                                         
T Consensus       459 ~vvMiTGDn~~TA~aIA~elGI~---------------------------------------------------------  481 (673)
T PRK14010        459 ETVMCTGDNELTAATIAKEAGVD---------------------------------------------------------  481 (673)
T ss_pred             eEEEECCCCHHHHHHHHHHcCCc---------------------------------------------------------
Confidence            99999999999999999999996                                                         


Q ss_pred             EEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           444 AVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       444 ~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                                               .++++++|++|.++|+.+|+.|+.|+|+|||.||+|+|++||+|||||++.
T Consensus       482 -------------------------~v~A~~~PedK~~iV~~lQ~~G~~VaMtGDGvNDAPALa~ADVGIAMgsGT  532 (673)
T PRK14010        482 -------------------------RFVAECKPEDKINVIREEQAKGHIVAMTGDGTNDAPALAEANVGLAMNSGT  532 (673)
T ss_pred             -------------------------eEEcCCCHHHHHHHHHHHHhCCCEEEEECCChhhHHHHHhCCEEEEeCCCC
Confidence                                     478999999999999999999999999999999999999999999999653

>KOG0203|consensus

Probab=100.00  E-value=5.8e-36  Score=310.42  Aligned_cols=305  Identities=28%  Similarity=0.330  Sum_probs=221.5

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc--------------cccc-----cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS--------------CINS-----RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~--------------~~~~-----~t~~~m~v~~~~  242 (523)
                      -|+++.+++.+.+.++|+.+|+|||..+|++++...+||+++||.              .|||     +|+|+|||+|+|
T Consensus       309 ~gy~~l~avv~~i~iivAnvPeGL~~tvTv~LtltakrMa~Knc~vknLeavetlGsts~I~SDktGTlTqnrMtVahlw  388 (1019)
T KOG0203|consen  309 LGYEWLRAVVFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHLW  388 (1019)
T ss_pred             hcchhHHHhhhhheeEEecCcCCccceehhhHHHHHHHHhhceeEEeeeeheeecccceeEeecceeeEEecceEEEeec
Confidence            489999999999999999999999999999999999999999983              2454     899999999999


Q ss_pred             hhhhccccce--------eeecCCccccCCceeEEeecc-----------------------------------------
Q psy78           243 ALTRLKKYNI--------SCINSRVINVSGSINCVCFDK-----------------------------------------  273 (523)
Q Consensus       243 ~~~~~~~~~i--------l~~~~~~~~~~~~v~~v~fDK-----------------------------------------  273 (523)
                      .++.+.+...        +++....+..+.++.++|.+-                                         
T Consensus       389 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~l~r~~~lCn~a~~~~gq~dvPv~kk~v~G~~se~ALlk~~e~~~~~~~~~R~  468 (1019)
T KOG0203|consen  389 FDNQIHEADTTEDQSGQSFDKSSATFIALSRIATLCNRAVFKPGQDDVPVLKRDVAGDASEVALLKFIELILGSVMELRE  468 (1019)
T ss_pred             cCCceeeeechhhhhcccccccCchHHHHHHHHHHhCcceecccccCCceeeeeccCCHHHHHHHHHHHHhcchHHHHHH
Confidence            9888743332        333344455555666666554                                         


Q ss_pred             --------ccccccc-c-----ccCCC--------------------------------CcchhHHHHHHHHHhhccCeE
Q psy78           274 --------MFESTGW-T-----LEEPM--------------------------------KFVPENIVSVLSEYTEQGYRV  307 (523)
Q Consensus       274 --------~~~~~~~-~-----~~~~~--------------------------------~~~~~~~~~~~~~~~~~G~r~  307 (523)
                              .|.+++. +     .+++.                                ++..+.+++..+++.+.|.||
T Consensus       469 ~~~kv~eipfNSt~Kyqlsih~~~d~~~~~~~l~mKGape~il~~CSTi~i~g~e~pld~~~~~~f~~ay~~lg~~GerV  548 (1019)
T KOG0203|consen  469 RNPKVAEIPFNSTNKYQLSIHETEDPSDPRFLLVMKGAPERILDRCSTILINGEEKPLDEKLKEAFQEAYLELGGLGERV  548 (1019)
T ss_pred             hhHHhhcCCcccccceEEEEEecCCCCCccceeeecCChHHHHhhccceeecCCCCCcCHHHHHHHHHHHHHhhhcchHH
Confidence                    1111110 0     01100                                033467788888999999999


Q ss_pred             EEEEEecCCchhHHHhhhc---chhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcC
Q psy78           308 IALASRTLSIEDYKHLNYM---KREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG  384 (523)
Q Consensus       308 l~~a~k~l~~~~~~~~~~~---~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lg  384 (523)
                      +++++++++++........   .....-.++.|+|++++-||+|..+.+|+.+||.+||+++|+|||++.+|.++|++.|
T Consensus       549 lgF~~~~l~~~~~p~~~~f~~d~~n~p~~nl~FlGl~s~idPPR~~vP~Av~~CrsAGIkvimVTgdhpiTAkAiA~~vg  628 (1019)
T KOG0203|consen  549 LGFCDLELPDEKFPRGFQFDTDDVNFPTDNLRFLGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKSVG  628 (1019)
T ss_pred             HHHHHHhcchhcCCCceEeecCCCCCcchhccccchhhccCCCcccCchhhhhhhhhCceEEEEecCccchhhhhhhhee
Confidence            9999999976532111111   2234557899999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccH--------HHHHhh
Q psy78           385 IIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSW--------ELIRDQ  456 (523)
Q Consensus       385 i~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~--------~~l~~~  456 (523)
                      |...+.......  .                    .+   ...   ..+..........++.|.++        +++.+.
T Consensus       629 Ii~~~~et~e~~--a--------------------~r---~~~---~v~~vn~~~a~a~VihG~eL~~~~~~qld~il~n  680 (1019)
T KOG0203|consen  629 IISEGSETVEDI--A--------------------KR---LNI---PVEQVNSRDAKAAVIHGSELPDMSSEQLDELLQN  680 (1019)
T ss_pred             eecCCchhhhhh--H--------------------Hh---cCC---cccccCccccceEEEecccccccCHHHHHHHHHh
Confidence            864332221100  0                    00   000   00000001112334444443        333333


Q ss_pred             CcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCCC
Q psy78           457 MPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPID  523 (523)
Q Consensus       457 ~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~va  523 (523)
                      .++         -+|+|.+|+||..+++..|++|+.|...|||.||.|+||.||+|||||-|..+++
T Consensus       681 h~e---------IVFARTSPqQKLiIVe~cQr~GaiVaVTGDGVNDsPALKKADIGVAMGiaGSDvs  738 (1019)
T KOG0203|consen  681 HQE---------IVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDVS  738 (1019)
T ss_pred             CCc---------eEEEecCccceEEeEhhhhhcCcEEEEeCCCcCCChhhcccccceeeccccchHH
Confidence            332         4899999999999999999999999999999999999999999999999888764

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=100.00  E-value=3.5e-32  Score=291.09  Aligned_cols=222  Identities=23%  Similarity=0.358  Sum_probs=160.3

Q ss_pred             HHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeE
Q psy78           189 IVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINC  268 (523)
Q Consensus       189 ~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~  268 (523)
                      ++..+++++|++|||+|+...++....|+.||+|+                           |+++|+++++|.+|++++
T Consensus       249 ~~~~lvallV~aiP~aLg~l~~av~iag~~r~ar~---------------------------gvLvK~~~avE~lg~v~~  301 (675)
T TIGR01497       249 SVTVLVALLVCLIPTTIGGLLSAIGIAGMDRVLGF---------------------------NVIATSGRAVEACGDVDT  301 (675)
T ss_pred             HHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHC---------------------------CeEeeCcHHHHHhhCCCE
Confidence            56778999999999999988888888999999999                           999999999999999999


Q ss_pred             Eeeccc-------ccccccc-ccCCC--------------Ccchh--HHHHHHHH-----------------Hhhc-cCe
Q psy78           269 VCFDKM-------FESTGWT-LEEPM--------------KFVPE--NIVSVLSE-----------------YTEQ-GYR  306 (523)
Q Consensus       269 v~fDK~-------~~~~~~~-~~~~~--------------~~~~~--~~~~~~~~-----------------~~~~-G~r  306 (523)
                      +||||.       ++.+++. .+..+              .+.|+  .+.+...+                 +.++ |+.
T Consensus       302 I~~DKTGTLT~g~~~v~~~~~~~~~~~~~ll~~aa~~~~~s~hP~a~Aiv~~a~~~~~~~~~~~~~~~~~~pf~~~~~~s  381 (675)
T TIGR01497       302 LLLDKTGTITLGNRLASEFIPAQGVDEKTLADAAQLASLADDTPEGKSIVILAKQLGIREDDVQSLHATFVEFTAQTRMS  381 (675)
T ss_pred             EEECCCCcccCCCeEEEEEEecCCCcHHHHHHHHHHhcCCCCCcHHHHHHHHHHHcCCCccccccccceEEEEcCCCcEE
Confidence            999991       1111110 00000              01111  11000000                 0011 111


Q ss_pred             --------EEEEEEecC------------CchhHHHhhhc-----chhhhhccceeeeeeeeccCCCcchHHHHHHHHhC
Q psy78           307 --------VIALASRTL------------SIEDYKHLNYM-----KREDIEKDLEFLGLIILENRLKPQTEGVIKELKDA  361 (523)
Q Consensus       307 --------~l~~a~k~l------------~~~~~~~~~~~-----~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~  361 (523)
                              .+..|..+.            +.+..+.....     ....+..|.+++|+++++|++||++++++++||++
T Consensus       382 g~~~~~g~~~~kGa~e~i~~~~~~~g~~~~~~~~~~~~~~a~~G~r~l~va~~~~~lG~i~l~D~~Rp~a~eaI~~l~~~  461 (675)
T TIGR01497       382 GINLDNGRMIRKGAVDAIKRHVEANGGHIPTDLDQAVDQVARQGGTPLVVCEDNRIYGVIYLKDIVKGGIKERFAQLRKM  461 (675)
T ss_pred             EEEEeCCeEEEECCHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCeEEEEEECCEEEEEEEecccchhHHHHHHHHHHHC
Confidence                    111111100            00000000000     01133456799999999999999999999999999


Q ss_pred             CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCce
Q psy78           362 RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAY  441 (523)
Q Consensus       362 Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (523)
                      |++++|+|||+..++..+|+++|++                                                       
T Consensus       462 Gi~v~miTGD~~~ta~~iA~~lGI~-------------------------------------------------------  486 (675)
T TIGR01497       462 GIKTIMITGDNRLTAAAIAAEAGVD-------------------------------------------------------  486 (675)
T ss_pred             CCEEEEEcCCCHHHHHHHHHHcCCC-------------------------------------------------------
Confidence            9999999999999999999999995                                                       


Q ss_pred             EEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           442 KFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       442 ~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                                                 .++++++|++|...++.+++.++.|+|+|||.||+|||++||+||||+++.
T Consensus       487 ---------------------------~v~a~~~PedK~~~v~~lq~~g~~VamvGDG~NDapAL~~AdvGiAm~~gt  537 (675)
T TIGR01497       487 ---------------------------DFIAEATPEDKIALIRQEQAEGKLVAMTGDGTNDAPALAQADVGVAMNSGT  537 (675)
T ss_pred             ---------------------------EEEcCCCHHHHHHHHHHHHHcCCeEEEECCCcchHHHHHhCCEeEEeCCCC
Confidence                                       478899999999999999999999999999999999999999999999764

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>KOG0207|consensus

Probab=99.98  E-value=5e-33  Score=292.79  Aligned_cols=230  Identities=24%  Similarity=0.314  Sum_probs=179.4

Q ss_pred             CchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccC
Q psy78           184 RSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVS  263 (523)
Q Consensus       184 ~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~  263 (523)
                      ..+..+|..+++++++||||||++|+|+++..|....|++                           |+|+|+++.+|.+
T Consensus       527 ~~~~~a~~~aisVlviACPCaLgLATPtAvmvatgvgA~n---------------------------GvLIKGge~LE~~  579 (951)
T KOG0207|consen  527 DAFSHAFQLAISVLVIACPCALGLATPTAVMVATGVGATN---------------------------GVLIKGGEALEKA  579 (951)
T ss_pred             HHHHHHHHhhheEEEEECchhhhcCCceEEEEEechhhhc---------------------------ceEEcCcHHHHHH
Confidence            5678899999999999999999999999999999999999                           9999999999999


Q ss_pred             CceeEEeeccc-------cccc------c-cccc----------CCC-----C-----------cchhHHHHHHHHHhhc
Q psy78           264 GSINCVCFDKM-------FEST------G-WTLE----------EPM-----K-----------FVPENIVSVLSEYTEQ  303 (523)
Q Consensus       264 ~~v~~v~fDK~-------~~~~------~-~~~~----------~~~-----~-----------~~~~~~~~~~~~~~~~  303 (523)
                      .++++++|||.       +..+      + +...          ..+     +           ..+.......+.+.++
T Consensus       580 hkv~tVvFDKTGTLT~G~~~V~~~~~~~~~~~~~e~l~~v~a~Es~SeHPig~AIv~yak~~~~~~~~~~~~~~~~~pg~  659 (951)
T KOG0207|consen  580 HKVKTVVFDKTGTLTEGKPTVVDFKSLSNPISLKEALALVAAMESGSEHPIGKAIVDYAKEKLVEPNPEGVLSFEYFPGE  659 (951)
T ss_pred             hcCCEEEEcCCCceecceEEEEEEEecCCcccHHHHHHHHHHHhcCCcCchHHHHHHHHHhcccccCccccceeecccCC
Confidence            99999999991       1111      1 1100          000     0           0111122233455666


Q ss_pred             cC--eEE------EEEEecCCch-----hHHHhh--------hcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCC
Q psy78           304 GY--RVI------ALASRTLSIE-----DYKHLN--------YMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDAR  362 (523)
Q Consensus       304 G~--r~l------~~a~k~l~~~-----~~~~~~--------~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~G  362 (523)
                      |.  .+.      .+|.+++-..     ......        ..+-..+..|.++.|++.++|++|+++..+++.||+.|
T Consensus       660 g~~~~~~~~~~~i~iGN~~~~~r~~~~~~~~i~~~~~~~e~~g~tvv~v~vn~~l~gv~~l~D~vr~~a~~av~~Lk~~G  739 (951)
T KOG0207|consen  660 GIYVTVTVDGNEVLIGNKEWMSRNGCSIPDDILDALTESERKGQTVVYVAVNGQLVGVFALEDQVRPDAALAVAELKSMG  739 (951)
T ss_pred             CcccceEEeeeEEeechHHHHHhcCCCCchhHHHhhhhHhhcCceEEEEEECCEEEEEEEeccccchhHHHHHHHHHhcC
Confidence            72  232      3333333111     000000        01112456788999999999999999999999999999


Q ss_pred             CcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceE
Q psy78           363 VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYK  442 (523)
Q Consensus       363 i~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (523)
                      ++++|+|||+..+|+++|+++|++                                                        
T Consensus       740 i~v~mLTGDn~~aA~svA~~VGi~--------------------------------------------------------  763 (951)
T KOG0207|consen  740 IKVVMLTGDNDAAARSVAQQVGID--------------------------------------------------------  763 (951)
T ss_pred             ceEEEEcCCCHHHHHHHHHhhCcc--------------------------------------------------------
Confidence            999999999999999999999985                                                        


Q ss_pred             EEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           443 FAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       443 l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                                                .++++..|++|.+.|+.+++.+..|+|+|||.||.|+|.+||+|||||.+ .++
T Consensus       764 --------------------------~V~aev~P~~K~~~Ik~lq~~~~~VaMVGDGINDaPALA~AdVGIaig~g-s~v  816 (951)
T KOG0207|consen  764 --------------------------NVYAEVLPEQKAEKIKEIQKNGGPVAMVGDGINDAPALAQADVGIAIGAG-SDV  816 (951)
T ss_pred             --------------------------eEEeccCchhhHHHHHHHHhcCCcEEEEeCCCCccHHHHhhccceeeccc-cHH
Confidence                                      58999999999999999999999999999999999999999999999988 555


Q ss_pred             C
Q psy78           523 D  523 (523)
Q Consensus       523 a  523 (523)
                      |
T Consensus       817 A  817 (951)
T KOG0207|consen  817 A  817 (951)
T ss_pred             H
Confidence            4

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=99.98  E-value=1.7e-31  Score=305.56  Aligned_cols=219  Identities=27%  Similarity=0.400  Sum_probs=160.1

Q ss_pred             hhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhh--------h-cc--------hhhhhccceeeeeeeeccCCCcchH
Q psy78           290 PENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLN--------Y-MK--------REDIEKDLEFLGLIILENRLKPQTE  352 (523)
Q Consensus       290 ~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~--------~-~~--------~~~~e~dl~~lG~i~~~d~lr~~t~  352 (523)
                      ++.+.+.+++++++|+|++++|+|++++++.+.+.        . .+        .+.+|+|++++|+++++|++|++++
T Consensus       558 ~~~~~~~~~~~a~~GlRtL~~A~k~l~~~e~~~~~~~~~~a~~~~~~r~~~~~~~~~~iE~~L~~lG~~gieD~lq~~v~  637 (1057)
T TIGR01652       558 NEETKEHLENYASEGLRTLCIAYRELSEEEYEEWNEEYNEASTALTDREEKLDVVAESIEKDLILLGATAIEDKLQEGVP  637 (1057)
T ss_pred             HHHHHHHHHHHHHcCCcEEEEEEEECCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCEEEEEEEEhhhhhhccH
Confidence            35567788999999999999999999865322110        0 01        2468999999999999999999999


Q ss_pred             HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78           353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE  432 (523)
Q Consensus       353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (523)
                      ++|++|+++||++||+|||+..+|.++|+++|+.+++...+..++...++....        ...+........   ...
T Consensus       638 etI~~L~~AGIkv~mlTGD~~~TA~~IA~~~~ii~~~~~~~~i~~~~~~~~~~~--------~~~i~~~~~~~~---~~~  706 (1057)
T TIGR01652       638 ETIELLRQAGIKIWVLTGDKVETAINIGYSCRLLSRNMEQIVITSESLDATRSV--------EAAIKFGLEGTS---EEF  706 (1057)
T ss_pred             HHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCCCCCCCeEEEEecCchhhhHHH--------HHHHHHHHHHHH---Hhh
Confidence            999999999999999999999999999999999887766666655321110000        000000000000   000


Q ss_pred             hhccCCCceEEEEecccHHHHHhhC-cchHhhhhc--ccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhHHHHHh
Q psy78           433 ELGLSSGAYKFAVTGKSWELIRDQM-PELIPRIIV--KGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDCGALRA  508 (523)
Q Consensus       433 ~~~~~~~~~~l~i~~~~~~~l~~~~-~~~~~~~~~--~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~~MLk~  508 (523)
                      ..........++++|+.++.+.+.. ...+..+..  +..++||++|+||+.+|+.+++. ++.|+|+|||.||++||++
T Consensus       707 ~~~~~~~~~~lvi~G~~l~~~l~~~~~~~f~~l~~~~~~vV~aR~sP~qK~~IV~~lk~~~~~~vl~iGDG~ND~~mlk~  786 (1057)
T TIGR01652       707 NNLGDSGNVALVIDGKSLGYALDEELEKEFLQLALKCKAVICCRVSPSQKADVVRLVKKSTGKTTLAIGDGANDVSMIQE  786 (1057)
T ss_pred             hhhccCCceEEEEccHHHHHHHhhHHHHHHHHHHhhCCEEEEeCCCHHHHHHHHHHHHhcCCCeEEEEeCCCccHHHHhh
Confidence            0111234567899999988765432 233444433  44599999999999999999998 9999999999999999999


Q ss_pred             CCccEEecccC
Q psy78           509 AHAGISLSEAE  519 (523)
Q Consensus       509 A~vGIAMgna~  519 (523)
                      ||+||++.+.+
T Consensus       787 AdVGIgi~g~e  797 (1057)
T TIGR01652       787 ADVGVGISGKE  797 (1057)
T ss_pred             cCeeeEecChH
Confidence            99999986655

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=99.97  E-value=2.2e-30  Score=285.33  Aligned_cols=226  Identities=24%  Similarity=0.292  Sum_probs=168.4

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccc
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVIN  261 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~  261 (523)
                      .+.++..++.+++++++++|||||++++|+++..++.+++|+                           ||++|+++++|
T Consensus       379 ~~~~~~~~i~~a~svlviacPcaL~latP~a~~~~l~~aar~---------------------------gilik~~~alE  431 (741)
T PRK11033        379 FAAPWQEWIYRGLTLLLIGCPCALVISTPAAITSGLAAAARR---------------------------GALIKGGAALE  431 (741)
T ss_pred             ccCCHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHHHC---------------------------CeEEcCcHHHH
Confidence            466788899999999999999999999999999999999999                           99999999999


Q ss_pred             cCCceeEEeeccc--c-----ccccccc-cCCC--------------CcchhHHHHHHHH-----------------Hhh
Q psy78           262 VSGSINCVCFDKM--F-----ESTGWTL-EEPM--------------KFVPENIVSVLSE-----------------YTE  302 (523)
Q Consensus       262 ~~~~v~~v~fDK~--~-----~~~~~~~-~~~~--------------~~~~~~~~~~~~~-----------------~~~  302 (523)
                      .+++++++||||.  +     +.++... +...              ...|  +.+.+-.                 ..+
T Consensus       432 ~l~~v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~aa~~e~~s~hP--ia~Ai~~~a~~~~~~~~~~~~~~~~~g  509 (741)
T PRK11033        432 QLGRVTTVAFDKTGTLTEGKPQVTDIHPATGISESELLALAAAVEQGSTHP--LAQAIVREAQVRGLAIPEAESQRALAG  509 (741)
T ss_pred             HhhCCCEEEEeCCCCCcCCceEEEEEEecCCCCHHHHHHHHHHHhcCCCCH--HHHHHHHHHHhcCCCCCCCcceEEEee
Confidence            9999999999991  1     1111100 0000              0111  1111111                 112


Q ss_pred             ccCeE------EEEEEecCCch----hHHH---h--hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEE
Q psy78           303 QGYRV------IALASRTLSIE----DYKH---L--NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM  367 (523)
Q Consensus       303 ~G~r~------l~~a~k~l~~~----~~~~---~--~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi  367 (523)
                      .|++.      +.++..++-.+    ....   .  .......+..|.+++|++.++|++|++++++|++|+++|++++|
T Consensus       510 ~Gv~~~~~g~~~~ig~~~~~~~~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~i~l~d~~r~~a~~~i~~L~~~gi~~~l  589 (741)
T PRK11033        510 SGIEGQVNGERVLICAPGKLPPLADAFAGQINELESAGKTVVLVLRNDDVLGLIALQDTLRADARQAISELKALGIKGVM  589 (741)
T ss_pred             EEEEEEECCEEEEEecchhhhhccHHHHHHHHHHHhCCCEEEEEEECCEEEEEEEEecCCchhHHHHHHHHHHCCCEEEE
Confidence            23321      12222222110    0000   0  00011245568899999999999999999999999999999999


Q ss_pred             EcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEec
Q psy78           368 ITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTG  447 (523)
Q Consensus       368 ~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~  447 (523)
                      +|||+..++..+++++|++                                                             
T Consensus       590 lTGd~~~~a~~ia~~lgi~-------------------------------------------------------------  608 (741)
T PRK11033        590 LTGDNPRAAAAIAGELGID-------------------------------------------------------------  608 (741)
T ss_pred             EcCCCHHHHHHHHHHcCCC-------------------------------------------------------------
Confidence            9999999999999999994                                                             


Q ss_pred             ccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           448 KSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       448 ~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                                            .+++..|++|..+++.+++. +.|+|+|||.||.+||+.||+|||||++.+
T Consensus       609 ----------------------~~~~~~p~~K~~~v~~l~~~-~~v~mvGDgiNDapAl~~A~vgia~g~~~~  658 (741)
T PRK11033        609 ----------------------FRAGLLPEDKVKAVTELNQH-APLAMVGDGINDAPAMKAASIGIAMGSGTD  658 (741)
T ss_pred             ----------------------eecCCCHHHHHHHHHHHhcC-CCEEEEECCHHhHHHHHhCCeeEEecCCCH
Confidence                                  34567899999999999865 589999999999999999999999998643

>PRK10671 copA copper exporting ATPase; Provisional

Probab=99.96  E-value=2.4e-28  Score=274.19  Aligned_cols=226  Identities=23%  Similarity=0.316  Sum_probs=170.6

Q ss_pred             hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCc
Q psy78           186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGS  265 (523)
Q Consensus       186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~  265 (523)
                      +..++.+++++++++|||||++++|++++.|+.+++|+                           ||++|+++.+|.+++
T Consensus       464 ~~~~~~~a~~vlv~acPcaL~la~p~a~~~~~~~~a~~---------------------------gilvk~~~~le~l~~  516 (834)
T PRK10671        464 IVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEF---------------------------GVLVRDADALQRAST  516 (834)
T ss_pred             HHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHC---------------------------CeEEecHHHHHhhcC
Confidence            45678899999999999999999999999999999999                           999999999999999


Q ss_pred             eeEEeeccc--c-----ccccccc-cCCC--------------Ccch--hHHHHHH-----------HHHhhccCeE---
Q psy78           266 INCVCFDKM--F-----ESTGWTL-EEPM--------------KFVP--ENIVSVL-----------SEYTEQGYRV---  307 (523)
Q Consensus       266 v~~v~fDK~--~-----~~~~~~~-~~~~--------------~~~~--~~~~~~~-----------~~~~~~G~r~---  307 (523)
                      ++++||||.  +     +.++... +...              ...|  ..+.+..           ++..+.|.+.   
T Consensus       517 v~~v~fDKTGTLT~g~~~v~~~~~~~~~~~~~~l~~a~~~e~~s~hp~a~Ai~~~~~~~~~~~~~~~~~~~g~Gv~~~~~  596 (834)
T PRK10671        517 LDTLVFDKTGTLTEGKPQVVAVKTFNGVDEAQALRLAAALEQGSSHPLARAILDKAGDMTLPQVNGFRTLRGLGVSGEAE  596 (834)
T ss_pred             CCEEEEcCCCccccCceEEEEEEccCCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHhhCCCCCcccceEecceEEEEEEC
Confidence            999999991  1     1111100 0000              1111  1111110           1112244432   


Q ss_pred             ---EEEEEecCCch----hH------HHh--hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCC
Q psy78           308 ---IALASRTLSIE----DY------KHL--NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDN  372 (523)
Q Consensus       308 ---l~~a~k~l~~~----~~------~~~--~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~  372 (523)
                         +.++.+++-.+    ..      +..  .......+..|..++|.+.+.|+++|+++++|++|++.|++++|+|||+
T Consensus       597 g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~va~~~~~~g~~~l~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~  676 (834)
T PRK10671        597 GHALLLGNQALLNEQQVDTKALEAEITAQASQGATPVLLAVDGKAAALLAIRDPLRSDSVAALQRLHKAGYRLVMLTGDN  676 (834)
T ss_pred             CEEEEEeCHHHHHHcCCChHHHHHHHHHHHhCCCeEEEEEECCEEEEEEEccCcchhhHHHHHHHHHHCCCeEEEEcCCC
Confidence               22233332100    00      000  0001124567889999999999999999999999999999999999999


Q ss_pred             HhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHH
Q psy78           373 IQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWEL  452 (523)
Q Consensus       373 ~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~  452 (523)
                      ..++..+++++|++                                                                  
T Consensus       677 ~~~a~~ia~~lgi~------------------------------------------------------------------  690 (834)
T PRK10671        677 PTTANAIAKEAGID------------------------------------------------------------------  690 (834)
T ss_pred             HHHHHHHHHHcCCC------------------------------------------------------------------
Confidence            99999999999995                                                                  


Q ss_pred             HHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           453 IRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       453 l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                                      .++++..|++|..+++.+++++++++|+|||.||++|++.||+||||||+.+
T Consensus       691 ----------------~~~~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~Agvgia~g~g~~  742 (834)
T PRK10671        691 ----------------EVIAGVLPDGKAEAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGSD  742 (834)
T ss_pred             ----------------EEEeCCCHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHHHhCCeeEEecCCCH
Confidence                            3677888999999999999999999999999999999999999999999754

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=99.96  E-value=7e-28  Score=256.53  Aligned_cols=199  Identities=35%  Similarity=0.563  Sum_probs=159.6

Q ss_pred             chHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCC
Q psy78           185 SLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSG  264 (523)
Q Consensus       185 ~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~  264 (523)
                      ++.+++.+++++++++||||||+++|+++..+..+|+|+                           ||++|+++.+|.++
T Consensus       176 ~~~~~~~~~~~vl~~~~P~aL~~~~~~~~~~~~~~~~~~---------------------------gilvk~~~~lE~l~  228 (499)
T TIGR01494       176 SIFKIFLRALILLVIAIPIALPLAVTIALAVGDARLAKK---------------------------GIVVRSLNALEELG  228 (499)
T ss_pred             cHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHC---------------------------CcEEechhhhhhcc
Confidence            346889999999999999999999999999999999999                           99999999999999


Q ss_pred             ceeEEeeccc--ccccccc-----ccC--CCCcch--hHH----------------------------------------
Q psy78           265 SINCVCFDKM--FESTGWT-----LEE--PMKFVP--ENI----------------------------------------  293 (523)
Q Consensus       265 ~v~~v~fDK~--~~~~~~~-----~~~--~~~~~~--~~~----------------------------------------  293 (523)
                      +++++||||.  ++.....     ..+  .....|  ..+                                        
T Consensus       229 ~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~s~hp~~~ai~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~G~~~~i  308 (499)
T TIGR01494       229 KVDYICSDKTGTLTKNEMSFKKVSVLGGEYLSGHPDERALVKSAKWKILNVFEFSSVRKRMSVIVRGPDGTYVKGAPEFV  308 (499)
T ss_pred             CCcEEEeeCCCccccCceEEEEEEecCCCcCCCChHHHHHHHHhhhcCcceeccCCCCceEEEEEecCCcEEEeCCHHHH
Confidence            9999999991  1111100     000  000011  000                                        


Q ss_pred             -------HHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEE
Q psy78           294 -------VSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVV  366 (523)
Q Consensus       294 -------~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vv  366 (523)
                             .+..+.+..+|+|+++                     +..+.+++|++.++|++|++++++|+.|+++|++++
T Consensus       309 ~~~~~~~~~~~~~~~~~g~~~~~---------------------~a~~~~~~g~i~l~d~lr~~~~~~i~~l~~~gi~~~  367 (499)
T TIGR01494       309 LSRVKDLEEKVKELAQSGLRVLA---------------------VASKETLLGLLGLEDPLRDDAKETISELREAGIRVI  367 (499)
T ss_pred             HHhhHHHHHHHHHHHhCCCEEEE---------------------EEECCeEEEEEEecCCCchhHHHHHHHHHHCCCeEE
Confidence                   0111112223333332                     234458999999999999999999999999999999


Q ss_pred             EEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEe
Q psy78           367 MITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT  446 (523)
Q Consensus       367 i~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  446 (523)
                      |+|||+..++..+|+++|+                                                             
T Consensus       368 ~ltGD~~~~a~~ia~~lgi-------------------------------------------------------------  386 (499)
T TIGR01494       368 MLTGDNVLTAKAIAKELGI-------------------------------------------------------------  386 (499)
T ss_pred             EEcCCCHHHHHHHHHHcCc-------------------------------------------------------------
Confidence            9999999999999999986                                                             


Q ss_pred             cccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec
Q psy78           447 GKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS  516 (523)
Q Consensus       447 ~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg  516 (523)
                                              +++.+|++|...++.+++.++.|+|+|||.||++||+.||+|||||
T Consensus       387 ------------------------~~~~~p~~K~~~v~~l~~~g~~v~~vGDg~nD~~al~~Advgia~~  432 (499)
T TIGR01494       387 ------------------------FARVTPEEKAALVEALQKKGRVVAMTGDGVNDAPALKKADVGIAMG  432 (499)
T ss_pred             ------------------------eeccCHHHHHHHHHHHHHCCCEEEEECCChhhHHHHHhCCCccccc
Confidence                                    2567899999999999999999999999999999999999999997

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=99.95  E-value=7.4e-28  Score=258.28  Aligned_cols=224  Identities=29%  Similarity=0.334  Sum_probs=167.0

Q ss_pred             hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCc
Q psy78           186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGS  265 (523)
Q Consensus       186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~  265 (523)
                      |..++.+++++++++|||||++++|+++..++.+++|+                           ||++|+++++|.+++
T Consensus       224 ~~~~~~~~~svlvvacPcaL~la~p~a~~~~~~~aa~~---------------------------gIlik~~~~lE~l~~  276 (562)
T TIGR01511       224 WLFALEFAVTVLIIACPCALGLATPTVIAVATGLAAKN---------------------------GVLIKDGDALERAAN  276 (562)
T ss_pred             HHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHC---------------------------CeEEcChHHHHHhhC
Confidence            34689999999999999999999999999999999999                           999999999999999


Q ss_pred             eeEEeeccc--cccccccc------cCCC--------------Ccch--hHHHHHH-------------HHHhhccCeE-
Q psy78           266 INCVCFDKM--FESTGWTL------EEPM--------------KFVP--ENIVSVL-------------SEYTEQGYRV-  307 (523)
Q Consensus       266 v~~v~fDK~--~~~~~~~~------~~~~--------------~~~~--~~~~~~~-------------~~~~~~G~r~-  307 (523)
                      ++++||||.  ++.....+      ....              ...|  ..+.+..             ++..++|.+. 
T Consensus       277 v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~~l~~aa~~e~~s~HPia~Ai~~~~~~~~~~~~~~~~~~~~~g~Gi~~~  356 (562)
T TIGR01511       277 IDTVVFDKTGTLTQGKPTVTDVHVFGDRDRTELLALAAALEAGSEHPLAKAIVSYAKEKGITLVEVSDFKAIPGIGVEGT  356 (562)
T ss_pred             CCEEEECCCCCCcCCCEEEEEEecCCCCCHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCcCCCCCeEEECCceEEEE
Confidence            999999991  11111000      0000              0111  1111111             1112333322 


Q ss_pred             -----EEEEEecCCchh----HH-HhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78           308 -----IALASRTLSIED----YK-HLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAI  377 (523)
Q Consensus       308 -----l~~a~k~l~~~~----~~-~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~  377 (523)
                           +.++.+.+-.+.    .+ .........+..|.+++|.+.++|+++|+++++|++|+++|++++|+|||+...+.
T Consensus       357 ~~g~~~~iG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~  436 (562)
T TIGR01511       357 VEGTKIQLGNEKLLGENAIKIDGKAEQGSTSVLVAVNGELAGVFALEDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAK  436 (562)
T ss_pred             ECCEEEEEECHHHHHhCCCCCChhhhCCCEEEEEEECCEEEEEEEecccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHH
Confidence                 122222211000    00 00001112466789999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhC
Q psy78           378 SVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQM  457 (523)
Q Consensus       378 ~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~  457 (523)
                      .+++++|++                                                                       
T Consensus       437 ~ia~~lgi~-----------------------------------------------------------------------  445 (562)
T TIGR01511       437 AVAKELGIN-----------------------------------------------------------------------  445 (562)
T ss_pred             HHHHHcCCc-----------------------------------------------------------------------
Confidence            999999983                                                                       


Q ss_pred             cchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           458 PELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       458 ~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                                  ++++..|++|...++.+++.+++++|+|||.||++|++.||+||+||++.
T Consensus       446 ------------~~~~~~p~~K~~~v~~l~~~~~~v~~VGDg~nD~~al~~A~vgia~g~g~  495 (562)
T TIGR01511       446 ------------VRAEVLPDDKAALIKELQEKGRVVAMVGDGINDAPALAQADVGIAIGAGT  495 (562)
T ss_pred             ------------EEccCChHHHHHHHHHHHHcCCEEEEEeCCCccHHHHhhCCEEEEeCCcC
Confidence                        34566789999999999999999999999999999999999999999764

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>KOG0210|consensus

Probab=99.95  E-value=4.2e-28  Score=246.52  Aligned_cols=208  Identities=26%  Similarity=0.411  Sum_probs=168.1

Q ss_pred             hhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhc---------ch---------hhhhccceeeeeeeeccCCCcch
Q psy78           290 PENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYM---------KR---------EDIEKDLEFLGLIILENRLKPQT  351 (523)
Q Consensus       290 ~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~---------~~---------~~~e~dl~~lG~i~~~d~lr~~t  351 (523)
                      .+++++..++|+++|+|++++|+|.+++++++.....         +|         ..+|.|++++|+.++||++++++
T Consensus       584 NdWleEE~gNMAREGLRtLVvakK~Ls~~eye~Fe~~y~~A~lSi~dR~~~ma~vv~~~LE~dlelL~LTGVEDkLQ~dV  663 (1051)
T KOG0210|consen  584 NDWLEEECGNMAREGLRTLVVAKKVLSEEEYEAFEEAYNAAKLSISDRDQKMANVVERYLERDLELLGLTGVEDKLQDDV  663 (1051)
T ss_pred             chhhhhhhhhhhhhcceEEEEEecccCHHHHHHHHHHHHhhhCccchHHHHHHHHHHHHHHhhhHHhcccChHHHHhhhh
Confidence            3567788899999999999999999987644322100         12         26899999999999999999999


Q ss_pred             HHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchh
Q psy78           352 EGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTE  431 (523)
Q Consensus       352 ~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (523)
                      +.+++.||++||++||+|||..++|..+|+..++...++++-.++.....              .+..          ..
T Consensus       664 k~tLElLRNAgikiWMLTGDKlETA~ciAkSs~L~sR~q~ihv~~~v~sr--------------~dah----------~e  719 (1051)
T KOG0210|consen  664 KPTLELLRNAGIKIWMLTGDKLETAICIAKSSRLFSRGQYIHVIRSVTSR--------------GDAH----------NE  719 (1051)
T ss_pred             HhHHHHHhhcCcEEEEEcCcchhheeeeehhccceecCceEEEEEecCCc--------------hHHH----------HH
Confidence            99999999999999999999999999999999998877776655543211              0000          01


Q ss_pred             hhhccCCCceEEEEecccHHHHHhhCcchHhhhhc--ccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhHHHHHh
Q psy78           432 EELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIV--KGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDCGALRA  508 (523)
Q Consensus       432 ~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~--~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~~MLk~  508 (523)
                      .+.........++++|+.++...+.++.++.++.+  ...++||++|.||+++++.++++ +..|+|+|||.||++|++.
T Consensus       720 L~~lR~k~~~aLvi~G~Sl~~cl~yye~Ef~el~~~~~aVv~CRctPtQKA~v~~llq~~t~krvc~IGDGGNDVsMIq~  799 (1051)
T KOG0210|consen  720 LNNLRRKTDCALVIDGESLEFCLKYYEDEFIELVCELPAVVCCRCTPTQKAQVVRLLQKKTGKRVCAIGDGGNDVSMIQA  799 (1051)
T ss_pred             HHHhhcCCCcEEEEcCchHHHHHHHHHHHHHHHHHhcCcEEEEecChhHHHHHHHHHHHhhCceEEEEcCCCccchheee
Confidence            11123456678999999999888888888887665  45789999999999999999998 8899999999999999999


Q ss_pred             CCccEEecccCCC
Q psy78           509 AHAGISLSEAESP  521 (523)
Q Consensus       509 A~vGIAMgna~~~  521 (523)
                      ||+||.+-..++.
T Consensus       800 A~~GiGI~gkEGk  812 (1051)
T KOG0210|consen  800 ADVGIGIVGKEGK  812 (1051)
T ss_pred             cccceeeeccccc
Confidence            9999998765543

>KOG0206|consensus

Probab=99.95  E-value=1.3e-27  Score=263.58  Aligned_cols=322  Identities=22%  Similarity=0.273  Sum_probs=216.1

Q ss_pred             hHHHHHHHHhheeeccCCCChhH------HHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhh------------c
Q psy78           186 LWDIVIKSLDIITIVIPPALPAT------MTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTR------------L  247 (523)
Q Consensus       186 ~~~~~~~~~~vlv~~~P~aLp~~------~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~------------~  247 (523)
                      -..-+..++++.=.++|+.=+-.      ..-.--.|+.+.+|+-=....+.|.+.+||.+....++            .
T Consensus       462 ~~~~f~~~la~chtv~~e~~~~~~~~~Y~A~SPDE~AlV~aAr~~gf~f~~Rt~~~vti~~~g~~~~y~lL~iLeF~S~R  541 (1151)
T KOG0206|consen  462 DILEFFRALALCHTVIPEKDEDSGKLSYEAESPDEAALVEAARELGFVFLGRTPDSVTIRELGVEETYELLNVLEFNSTR  541 (1151)
T ss_pred             hHHHHhhHHhccceeeeccCCCccceeeecCCCcHHHHHHHHHhcCceeeeccCceEEEeccccceeEEEEEEecccccc
Confidence            34457778888777777762111      00001112222233311223456778888775552111            2


Q ss_pred             cccceeeecCCc--cccCCceeEEeeccccccccccccCCCCcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhh
Q psy78           248 KKYNISCINSRV--INVSGSINCVCFDKMFESTGWTLEEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNY  325 (523)
Q Consensus       248 ~~~~il~~~~~~--~~~~~~v~~v~fDK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~  325 (523)
                      ++|.+++|++.-  +--+.++|.+.|+.        +....+...+...+++++++.+|+|++++|||++++++++.+..
T Consensus       542 KRMSVIVR~p~g~i~LycKGADsvI~er--------L~~~~~~~~e~T~~Hl~~yA~eGLRTLc~A~r~l~e~eY~~w~~  613 (1151)
T KOG0206|consen  542 KRMSVIVRDPDGRILLYCKGADSVIFER--------LSKNGEKLREKTQEHLEEYATEGLRTLCLAYRELDEEEYEEWNE  613 (1151)
T ss_pred             ceeEEEEEcCCCcEEEEEcCcchhhHhh--------hhhcchHHHHHHHHHHHHHHhhhhhHhhhhhhccCHHHHHHHHH
Confidence            567778887663  33344555555554        22233455677788999999999999999999999876544431


Q ss_pred             c---------ch--------hhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCC
Q psy78           326 M---------KR--------EDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP  388 (523)
Q Consensus       326 ~---------~~--------~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~  388 (523)
                      .         +|        +.+|+||.++|.+++||++++++.++|+.|+++|||+|++|||..+||.+++..|++..+
T Consensus       614 ~~~~A~ts~~~Re~~L~e~ae~iEk~L~LLGATAIEDkLQdgVPetI~~L~~AGIKIWVLTGDK~ETAiNIg~sC~Ll~~  693 (1151)
T KOG0206|consen  614 RYNEAKTSLTDREELLDEVAEEIEKDLILLGATAIEDKLQDGVPETIAKLAQAGIKIWVLTGDKQETAINIGYSCRLLRQ  693 (1151)
T ss_pred             HHHHHHhhccCHHHHHHHHHHHHHhcchhhcceeeechhccCchHHHHHHHHcCCEEEEEcCcHHHHHHHHHHhhcCCCC
Confidence            1         22        378999999999999999999999999999999999999999999999999999999988


Q ss_pred             CCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCC-CceEEEEecccHHHHHhhCc-chHhh--h
Q psy78           389 GETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSS-GAYKFAVTGKSWELIRDQMP-ELIPR--I  464 (523)
Q Consensus       389 ~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~i~~~~~~~l~~~~~-~~~~~--~  464 (523)
                      +...+.++............      ...+.+.................. ....++++|+.+....+... ..|..  .
T Consensus       694 ~m~~i~i~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~~~~~~~~aLVIDGktl~~aL~~~~~~~Fl~la~  767 (1151)
T KOG0206|consen  694 DMKLIIINTETSEELSSLDA------TAALKETLLRKFTEELEEAKLEHSEKPFALVIDGKTLAYALEDELRKKFLELAK  767 (1151)
T ss_pred             CceEEEEecCChhhhcchhh------HHHHHHHHHHhhhHHHHHHhhccCcCCceEEEECHHHHhhhCchhhHHHHHHHH
Confidence            88888877655331100000      000000000000000000001111 36889999999887665422 23333  4


Q ss_pred             hcccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           465 IVKGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       465 ~~~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      .|+..++||++|.||+.+++..++. +..++|||||.||++|++.||+||.++..++-
T Consensus       768 ~C~sViCCR~sPlQKA~Vv~lVk~~~~~~TLAIGDGANDVsMIQ~AhVGVGIsG~EGm  825 (1151)
T KOG0206|consen  768 RCKSVICCRVSPLQKALVVKLVKKGLKAVTLAIGDGANDVSMIQEAHVGVGISGQEGM  825 (1151)
T ss_pred             hcCEEEEccCCHHHHHHHHHHHHhcCCceEEEeeCCCccchheeeCCcCeeeccchhh
Confidence            5678899999999999999999765 88999999999999999999999999987653

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.95  E-value=3.2e-27  Score=252.51  Aligned_cols=221  Identities=28%  Similarity=0.366  Sum_probs=165.8

Q ss_pred             HHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCceeE
Q psy78           189 IVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSINC  268 (523)
Q Consensus       189 ~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~~  268 (523)
                      ++.+++++++++||||||+++|+++..|+.+++|+                           ||++|+++++|.++++++
T Consensus       196 ~~~~~~svlv~~~P~aL~la~~~~~~~~~~~~~k~---------------------------gilik~~~~le~l~~v~~  248 (536)
T TIGR01512       196 WVYRALVLLVVASPCALVISAPAAYLSAISAAARH---------------------------GILIKGGAALEALAKIKT  248 (536)
T ss_pred             HHHHHHHHHhhcCccccccchHHHHHHHHHHHHHC---------------------------CeEEcCcHHHHhhcCCCE
Confidence            68899999999999999999999999999999999                           999999999999999999


Q ss_pred             Eeeccc--cccccccccC--------------CCCcch--hHHHHH---------HHHHhhccCeEE------EEEEecC
Q psy78           269 VCFDKM--FESTGWTLEE--------------PMKFVP--ENIVSV---------LSEYTEQGYRVI------ALASRTL  315 (523)
Q Consensus       269 v~fDK~--~~~~~~~~~~--------------~~~~~~--~~~~~~---------~~~~~~~G~r~l------~~a~k~l  315 (523)
                      +||||.  .+..+..+.+              .....|  ..+.+.         .+++.++|++..      .++.+++
T Consensus       249 i~fDKTGTLT~~~~~v~~~~~~~~l~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~~~~~~~g~gi~~~~~g~~~~ig~~~~  328 (536)
T TIGR01512       249 VAFDKTGTLTTGRPKVVDVVPAEVLRLAAAAEQASSHPLARAIVDYARKRENVESVEEVPGEGVRAVVDGGEVRIGNPRS  328 (536)
T ss_pred             EEECCCCCCcCCceEEEEeeHHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCcceEEecCCeEEEEECCeEEEEcCHHH
Confidence            999992  1111111000              000111  111111         112234444321      1222111


Q ss_pred             Cchh---HHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCC-cEEEEcCCCHhhHHHHHHHcCccCCCCe
Q psy78           316 SIED---YKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARV-KVVMITGDNIQTAISVAKECGIIDPGET  391 (523)
Q Consensus       316 ~~~~---~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi-~vvi~TGr~~~~a~~ia~~lgi~~~~~~  391 (523)
                      ..+.   ...........+..|..+.|.+.++|+++|+++++|++|+++|+ +++|+|||+...+..+++++|++     
T Consensus       329 ~~~~~~~~~~~~~~~~~~v~~~~~~~g~i~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~-----  403 (536)
T TIGR01512       329 LEAAVGARPESAGKTIVHVARDGTYLGYILLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID-----  403 (536)
T ss_pred             HhhcCCcchhhCCCeEEEEEECCEEEEEEEEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh-----
Confidence            1000   00000011124667899999999999999999999999999999 99999999999999999999995     


Q ss_pred             EEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEE
Q psy78           392 VVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIF  471 (523)
Q Consensus       392 ~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~  471 (523)
                                                                                                   .++
T Consensus       404 -----------------------------------------------------------------------------~~f  406 (536)
T TIGR01512       404 -----------------------------------------------------------------------------EVH  406 (536)
T ss_pred             -----------------------------------------------------------------------------hhh
Confidence                                                                                         245


Q ss_pred             EcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec-cc
Q psy78           472 ARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS-EA  518 (523)
Q Consensus       472 ~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg-na  518 (523)
                      ++..|++|..+++.+++.+++++|+|||.||++|++.||+||+|| ++
T Consensus       407 ~~~~p~~K~~~i~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~  454 (536)
T TIGR01512       407 AELLPEDKLEIVKELREKYGPVAMVGDGINDAPALAAADVGIAMGASG  454 (536)
T ss_pred             hccCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHhCCEEEEeCCCc
Confidence            677899999999999999999999999999999999999999999 44

.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.94  E-value=1.2e-26  Score=249.67  Aligned_cols=223  Identities=29%  Similarity=0.386  Sum_probs=167.1

Q ss_pred             HHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCcee
Q psy78           188 DIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSIN  267 (523)
Q Consensus       188 ~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v~  267 (523)
                      .++.+++++++++||||||+++|++++.++.+|+|+                           ||++|+++++|.+++++
T Consensus       195 ~~~~~~~~vlv~~~P~al~l~~~~~~~~~~~~~~~~---------------------------gilvk~~~~le~l~~v~  247 (556)
T TIGR01525       195 GALYRALAVLVVACPCALGLATPVAILVAIGVAARR---------------------------GILIKGGDALEKLAKVK  247 (556)
T ss_pred             hHHHHHHHHHhhccccchhehhHHHHHHHHHHHHHC---------------------------CceecCchHHHHhhcCC
Confidence            678899999999999999999999999999999999                           99999999999999999


Q ss_pred             EEeeccc--c-----ccccccc-cC----CC----------C--cch--hHHHH-------------HHHHHhhccCeE-
Q psy78           268 CVCFDKM--F-----ESTGWTL-EE----PM----------K--FVP--ENIVS-------------VLSEYTEQGYRV-  307 (523)
Q Consensus       268 ~v~fDK~--~-----~~~~~~~-~~----~~----------~--~~~--~~~~~-------------~~~~~~~~G~r~-  307 (523)
                      ++||||.  .     +..+... .+    .+          +  ..|  ..+.+             ..++..++|++. 
T Consensus       248 ~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~~~~l~~a~~~e~~~~hp~~~Ai~~~~~~~~~~~~~~~~~~~~~~~gi~~~  327 (556)
T TIGR01525       248 TVVFDKTGTLTTGKPTVVDVEPLDDASISEEELLALAAALEQSSSHPLARAIVRYAKKRGLELPKQEDVEEVPGKGVEAT  327 (556)
T ss_pred             EEEEeCCCCCcCCceEEEEEEecCCCCccHHHHHHHHHHHhccCCChHHHHHHHHHHhcCCCcccccCeeEecCCeEEEE
Confidence            9999991  1     1110000 00    00          0  001  00000             111223334332 


Q ss_pred             ------EEEEEecCC---chh-H--H-H-h----hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCC-CcEEEE
Q psy78           308 ------IALASRTLS---IED-Y--K-H-L----NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDAR-VKVVMI  368 (523)
Q Consensus       308 ------l~~a~k~l~---~~~-~--~-~-~----~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~G-i~vvi~  368 (523)
                            +.++.+++-   ... .  + . .    .......+..|.+++|.+.++|+++|+++++|++|+++| ++++|+
T Consensus       328 ~~g~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~g~i~~~d~~~~g~~e~l~~L~~~g~i~v~iv  407 (556)
T TIGR01525       328 VDGQEEVRIGNPRLLELAAEPISASPDLLNEGESQGKTVVFVAVDGELLGVIALRDQLRPEAKEAIAALKRAGGIKLVML  407 (556)
T ss_pred             ECCeeEEEEecHHHHhhcCCCchhhHHHHHHHhhCCcEEEEEEECCEEEEEEEecccchHhHHHHHHHHHHcCCCeEEEE
Confidence                  222222210   000 0  0 0 0    000112456789999999999999999999999999999 999999


Q ss_pred             cCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecc
Q psy78           369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGK  448 (523)
Q Consensus       369 TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  448 (523)
                      |||+..++..+++++|++                                                              
T Consensus       408 Tgd~~~~a~~i~~~lgi~--------------------------------------------------------------  425 (556)
T TIGR01525       408 TGDNRSAAEAVAAELGID--------------------------------------------------------------  425 (556)
T ss_pred             eCCCHHHHHHHHHHhCCC--------------------------------------------------------------
Confidence            999999999999999995                                                              


Q ss_pred             cHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           449 SWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       449 ~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                                          .++.++.|++|...++.+++.+++++|+|||.||++|++.||+||+||++.
T Consensus       426 --------------------~~f~~~~p~~K~~~v~~l~~~~~~v~~vGDg~nD~~al~~A~vgia~g~~~  476 (556)
T TIGR01525       426 --------------------EVHAELLPEDKLAIVKELQEEGGVVAMVGDGINDAPALAAADVGIAMGAGS  476 (556)
T ss_pred             --------------------eeeccCCHHHHHHHHHHHHHcCCEEEEEECChhHHHHHhhCCEeEEeCCCC
Confidence                                366778899999999999999999999999999999999999999999754

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>PLN03190 aminophospholipid translocase; Provisional

Probab=99.94  E-value=1.4e-26  Score=263.31  Aligned_cols=222  Identities=22%  Similarity=0.323  Sum_probs=159.3

Q ss_pred             hhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhh----h-----cc--------hhhhhccceeeeeeeeccCCCcchH
Q psy78           290 PENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLN----Y-----MK--------REDIEKDLEFLGLIILENRLKPQTE  352 (523)
Q Consensus       290 ~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~----~-----~~--------~~~~e~dl~~lG~i~~~d~lr~~t~  352 (523)
                      ++.+.+.+++++++|+||+++|+|++++++.+.+.    .     .+        .+.+|+|++++|+++++|++|++++
T Consensus       653 ~~~~~~~l~~~a~~GlRtL~lA~k~l~~~e~~~~~~~~~~a~~~~~~r~~~l~~~~~~iE~dL~~lG~~~~~D~lr~~v~  732 (1178)
T PLN03190        653 IRATEAHLHTYSSLGLRTLVVGMRELNDSEFEQWHFSFEAASTALIGRAALLRKVASNVENNLTILGASAIEDKLQQGVP  732 (1178)
T ss_pred             HHHHHHHHHHHHhcCCceEEEEEEeCCHHHHhhHHHHHHHhhhhhhhhHHHHHhhHHhhhcCcEEEEEEEEecCCchhHH
Confidence            45567888999999999999999999754322111    0     01        1467999999999999999999999


Q ss_pred             HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhccc-----
Q psy78           353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNY-----  427 (523)
Q Consensus       353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  427 (523)
                      ++|++|+++|+++||+|||+..+|.++|+++|+..++...+..+.......... +       ............     
T Consensus       733 ~~I~~l~~agi~v~mlTGD~~~tAi~IA~s~~Ll~~~~~~i~i~~~~~~~~~~~-l-------~~~~~~~~~~~~~~~~~  804 (1178)
T PLN03190        733 EAIESLRTAGIKVWVLTGDKQETAISIGYSSKLLTNKMTQIIINSNSKESCRKS-L-------EDALVMSKKLTTVSGIS  804 (1178)
T ss_pred             HHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCCCCCCeeEEecCCchhhHHHH-H-------HHHhhhhhhcccccccc
Confidence            999999999999999999999999999999999887766655544321100000 0       000000000000     


Q ss_pred             CchhhhhccCCCceEEEEecccHHHHHh-hCcchHhhhhc--ccEEEEcCChHhHHHHHHHHHHC-CCEEEEEcCChhhH
Q psy78           428 SKTEEELGLSSGAYKFAVTGKSWELIRD-QMPELIPRIIV--KGAIFARMSSDQKQQLVLELQQL-GYYVAMCGDGANDC  503 (523)
Q Consensus       428 ~~~~~~~~~~~~~~~l~i~~~~~~~l~~-~~~~~~~~~~~--~~~v~~~~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND~  503 (523)
                      ...............++++|+.+..+.+ ..++.+.++..  +..++||++|.||+.+|+.+++. ++.|+|+|||.||+
T Consensus       805 ~~~~~~~~~~~~~~~lVIdG~~L~~~l~~~~~~~f~~l~~~~~~VI~cR~sP~QKa~IV~~vk~~~~~vtlaIGDGaNDv  884 (1178)
T PLN03190        805 QNTGGSSAAASDPVALIIDGTSLVYVLDSELEEQLFQLASKCSVVLCCRVAPLQKAGIVALVKNRTSDMTLAIGDGANDV  884 (1178)
T ss_pred             ccccccccccCCceEEEEEcHHHHHHhhhHHHHHHHHHHHhCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEECCCcchH
Confidence            0000000112345679999999988764 23344555544  34479999999999999999997 57899999999999


Q ss_pred             HHHHhCCccEEecccC
Q psy78           504 GALRAAHAGISLSEAE  519 (523)
Q Consensus       504 ~MLk~A~vGIAMgna~  519 (523)
                      +||++|||||++.+.+
T Consensus       885 ~mIq~AdVGIGIsG~E  900 (1178)
T PLN03190        885 SMIQMADVGVGISGQE  900 (1178)
T ss_pred             HHHHhcCeeeeecCch
Confidence            9999999999877665

>KOG0205|consensus

Probab=99.92  E-value=1.9e-25  Score=226.17  Aligned_cols=263  Identities=24%  Similarity=0.366  Sum_probs=183.0

Q ss_pred             HhheeeccCCCChhHHHHHHHHHHHHHhhccc----------------ccccc---cceeeeeeeh--hhhhhh------
Q psy78           194 LDIITIVIPPALPATMTVGKLYALTRLKKYNI----------------SCINS---RVINLMTVGK--LYALTR------  246 (523)
Q Consensus       194 ~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~----------------~~~~~---~t~~~m~v~~--~~~~~~------  246 (523)
                      +.+++..+|-|||..++++++.|..||+++++                +|+++   +|.|+.||.+  +...-+      
T Consensus       282 lvllIGgiPiamPtVlsvTMAiGs~rLaqqgAItkrmtAIEemAGmdVLCSDKTGTLTlNkLSvdknl~ev~v~gv~~D~  361 (942)
T KOG0205|consen  282 LVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLIEVFVKGVDKDD  361 (942)
T ss_pred             heeeecccccccceeeeehhhHHHHHHHhcccHHHHHHHHHHhhCceEEeecCcCceeecceecCcCcceeeecCCChHH
Confidence            33455559999999999999999999999986                34444   7888877766  311000      


Q ss_pred             -c---------cccce-------eeecCCccccCCce---eEEeeccccccccccccCCC--------------------
Q psy78           247 -L---------KKYNI-------SCINSRVINVSGSI---NCVCFDKMFESTGWTLEEPM--------------------  286 (523)
Q Consensus       247 -~---------~~~~i-------l~~~~~~~~~~~~v---~~v~fDK~~~~~~~~~~~~~--------------------  286 (523)
                       +         +.++-       -.+||  -|..+++   +...||..-+.+.....+++                    
T Consensus       362 ~~L~A~rAsr~en~DAID~A~v~~L~dP--Keara~ikevhF~PFnPV~Krta~ty~d~dG~~~r~sKGAPeqil~l~~~  439 (942)
T KOG0205|consen  362 VLLTAARASRKENQDAIDAAIVGMLADP--KEARAGIKEVHFLPFNPVDKRTALTYIDPDGNWHRVSKGAPEQILKLCNE  439 (942)
T ss_pred             HHHHHHHHhhhcChhhHHHHHHHhhcCH--HHHhhCceEEeeccCCccccceEEEEECCCCCEEEecCCChHHHHHHhhc
Confidence             0         00000       00011  1222233   33335552222222211111                    


Q ss_pred             -CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcE
Q psy78           287 -KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKV  365 (523)
Q Consensus       287 -~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~v  365 (523)
                       .++|+.....++.++++|+|.+++|++..++.+.+        .-....+++|+..+-||+|.++.++|.+...-|+.|
T Consensus       440 ~~~i~~~vh~~id~~AeRGlRSLgVArq~v~e~~~~--------~~g~pw~~~gllp~fdpprhdsa~tirral~lGv~V  511 (942)
T KOG0205|consen  440 DHDIPERVHSIIDKFAERGLRSLAVARQEVPEKTKE--------SPGGPWEFVGLLPLFDPPRHDSAETIRRALNLGVNV  511 (942)
T ss_pred             cCcchHHHHHHHHHHHHhcchhhhhhhhcccccccc--------CCCCCcccccccccCCCCccchHHHHHHHHhcccee
Confidence             26789999999999999999999999998765322        223568999999999999999999999999999999


Q ss_pred             EEEcCCCHhhHHHHHHHcCccCCCC---eEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceE
Q psy78           366 VMITGDNIQTAISVAKECGIIDPGE---TVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYK  442 (523)
Q Consensus       366 vi~TGr~~~~a~~ia~~lgi~~~~~---~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (523)
                      .|+|||...-+....+++|+-.+-.   ..+-.++..                                           
T Consensus       512 kmitgdqlaI~keTgrrlgmgtnmypss~llG~~~~~-------------------------------------------  548 (942)
T KOG0205|consen  512 KMITGDQLAIAKETGRRLGMGTNMYPSSALLGLGKDG-------------------------------------------  548 (942)
T ss_pred             eeecchHHHHHHhhhhhhccccCcCCchhhccCCCCC-------------------------------------------
Confidence            9999999999999999999853210   000000000                                           


Q ss_pred             EEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           443 FAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       443 l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                       .+.+-           ...+++.+.+-|+.+.|++|..+++.|+++++.+.|.|||.||.|+||.||+|||..+|.+.
T Consensus       549 -~~~~~-----------~v~elie~adgfAgVfpehKy~iV~~Lq~r~hi~gmtgdgvndapaLKkAdigiava~atda  615 (942)
T KOG0205|consen  549 -SMPGS-----------PVDELIEKADGFAGVFPEHKYEIVKILQERKHIVGMTGDGVNDAPALKKADIGIAVADATDA  615 (942)
T ss_pred             -CCCCC-----------cHHHHhhhccCccccCHHHHHHHHHHHhhcCceecccCCCcccchhhcccccceeeccchhh
Confidence             00011           11122333457899999999999999999999999999999999999999999999998764

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=99.91  E-value=2.3e-24  Score=213.79  Aligned_cols=107  Identities=36%  Similarity=0.534  Sum_probs=101.5

Q ss_pred             hhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEE
Q psy78           331 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF  410 (523)
Q Consensus       331 ~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~  410 (523)
                      +..|..++|.+.++|-++|+.+|-+.+||+.||+.+|+|||++.||..+|+|.|.|                        
T Consensus       432 V~~~~~~~GVI~LkDivK~Gi~ERf~elR~MgIkTvM~TGDN~~TAa~IA~EAGVD------------------------  487 (681)
T COG2216         432 VVENGRILGVIYLKDIVKPGIKERFAELRKMGIKTVMITGDNPLTAAAIAAEAGVD------------------------  487 (681)
T ss_pred             EEECCEEEEEEEehhhcchhHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHHHhCch------------------------
Confidence            34688999999999999999999999999999999999999999999999999997                        


Q ss_pred             EecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCC
Q psy78           411 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLG  490 (523)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~  490 (523)
                                                                                .+.++++|++|...++.-|..+
T Consensus       488 ----------------------------------------------------------dfiAeatPEdK~~~I~~eQ~~g  509 (681)
T COG2216         488 ----------------------------------------------------------DFIAEATPEDKLALIRQEQAEG  509 (681)
T ss_pred             ----------------------------------------------------------hhhhcCChHHHHHHHHHHHhcC
Confidence                                                                      3678999999999999999999


Q ss_pred             CEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           491 YYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       491 ~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                      +-|+|+|||.||+|+|.+||+|+||.++.
T Consensus       510 rlVAMtGDGTNDAPALAqAdVg~AMNsGT  538 (681)
T COG2216         510 RLVAMTGDGTNDAPALAQADVGVAMNSGT  538 (681)
T ss_pred             cEEEEcCCCCCcchhhhhcchhhhhcccc
Confidence            99999999999999999999999998764

>KOG0208|consensus

Probab=99.81  E-value=2.9e-20  Score=197.06  Aligned_cols=143  Identities=27%  Similarity=0.485  Sum_probs=126.3

Q ss_pred             ChHHHHHHHHHHHHHHhhhhccccccccccCCCCccCCccchhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHH
Q psy78             1 MFFQLILMVSMQIISFIIVHKFAWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSII   80 (523)
Q Consensus         1 ~~~q~~i~~~~q~~~~~~~~~q~w~~~~~~~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~   80 (523)
                      +++|+++.+++|.+.+++++.||||.|+.+.-+++.+|++||++|++|+||||..|+++|+|+|||+|+|+|++|...+.
T Consensus       987 l~~q~vli~l~q~i~~l~~~~qpw~~pp~~~~~~nt~s~~~T~lF~vS~fqYi~~a~v~S~g~pfr~pl~~n~~f~~~i~ 1066 (1140)
T KOG0208|consen  987 LLLQIVLICLVQWILTLIVEPQPWYEPPNPQVDDNTQSSDNTSLFFVSSFQYIFIALVLSKGSPFRRPLWKNVLFKVFIT 1066 (1140)
T ss_pred             hHHHHHHHHHHHHhhheeeccccceecCCCCcCcccccceeeEeeehhHHHHHHhheeeccCCcccCchhcCceeeeehh
Confidence            47999999999999999999999999988877889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhheeecCchHH-HHhccccCCCCCchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Q psy78            81 IMTWVCIYITLIPSEFI-IQFLQLRFPPNMQFPLIVIYLAICNFVLSLFI---ENFIIHYLLMIKFK  143 (523)
Q Consensus        81 ~~~~~~~~~~~~~~~~~-~~~~~l~~~p~~~f~~~l~~~~~~~~~~~~~~---E~~~~~~~~~~~~~  143 (523)
                      .+.+.++++.+.+.... ...+++...|...+|++++++.+.+++..+..   |+++..+.++...+
T Consensus      1067 ~i~~~~i~l~~~~~~~~~~~l~~~t~~~~~~~~fii~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 1133 (1140)
T KOG0208|consen 1067 VIILSTIYLLFVNYLFIEWKLLQLTYIPTTFDRFIILLVVISYFALNYIQPSVGRMLGDKSMRDLVP 1133 (1140)
T ss_pred             hHHhhhhhhhhccccchhhhhhceeccCcchhHHHHHHHHHHHHHHHHhhhhhhchhhhHHHHHhcc
Confidence            99999999888766542 36799999997788999999999999988888   56666665554433

>KOG0209|consensus

Probab=99.79  E-value=1.1e-19  Score=188.98  Aligned_cols=137  Identities=18%  Similarity=0.236  Sum_probs=125.5

Q ss_pred             ChHHHHHHHHHHHHHHhhhhcccccccccc----CCCCccCCccchhHHHHHHHHHHhhheeeecCCCcccccccchhHH
Q psy78             1 MFFQLILMVSMQIISFIIVHKFAWFEPFVY----TNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFI   76 (523)
Q Consensus         1 ~~~q~~i~~~~q~~~~~~~~~q~w~~~~~~----~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~   76 (523)
                      ++++++.|+++|+..++|+.++..-..++.    .++++.||..||++|++++.||+.|++|||+|+|||+++.+|++++
T Consensus      1009 ~i~svl~QFaVH~~tLvYi~~~a~~~~p~~~~vdl~~~F~PsllNt~vyiisl~~QvsTFAVNY~G~PF~Esl~eNK~l~ 1088 (1160)
T KOG0209|consen 1009 IILSVLLQFAVHIATLVYITGEAYKLEPPEEKVDLEEKFSPSLLNTTVYIISLAQQVSTFAVNYQGRPFRESLRENKGLL 1088 (1160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHhcCCcccccChhcccChhhhhhHHHHHHHHHHHHHhhhhccCcchhhhhhhccchH
Confidence            378999999999999999998887543332    2567899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy78            77 LSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAICNFVLSLFIENFIIHYLL  138 (523)
Q Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~~~~~~~~~~~~~E~~~~~~~~  138 (523)
                      +++++..++.+.+..+..+.++..|+++++| .+||..+++.++.++++||++|+++..+|.
T Consensus      1089 y~ll~~~~~~~~l~tg~~peLn~~~~lV~mp-~~fk~~ll~~l~lD~v~c~~~er~~~f~f~ 1149 (1160)
T KOG0209|consen 1089 YGLLGSAGVIIALATGSSPELNEKFELVDMP-QDFKIKLLAVLVLDFVLCYLVERVLKFFFG 1149 (1160)
T ss_pred             HHHHHHHHHHHHHHhccChhHHhheeeeccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999 599999999999999999999998877765

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=99.76  E-value=1.3e-18  Score=171.08  Aligned_cols=186  Identities=16%  Similarity=0.148  Sum_probs=112.8

Q ss_pred             cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-
Q psy78           334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-  412 (523)
Q Consensus       334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-  412 (523)
                      |+|++.   -..++.+.++++|++++++|++++++|||+...+..++++++++.+..++++.||+.+.+.......+.. 
T Consensus        11 DGTLl~---~~~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~I~~NGa~i~~~~~~~~i~~~~   87 (270)
T PRK10513         11 DGTLLL---PDHTISPAVKQAIAAARAKGVNVVLTTGRPYAGVHRYLKELHMEQPGDYCITNNGALVQKAADGETVAQTA   87 (270)
T ss_pred             CCcCcC---CCCccCHHHHHHHHHHHHCCCEEEEecCCChHHHHHHHHHhCCCCCCCeEEEcCCeEEEECCCCCEEEecC
Confidence            445553   1346999999999999999999999999999999999999999766678999999877643222222221 


Q ss_pred             cCcchhhh---hhhhccc---------------Cch-----------------hhhhccC-CCceEEEEec--ccHHHHH
Q psy78           413 SGVSAIQT---KAKKLNY---------------SKT-----------------EEELGLS-SGAYKFAVTG--KSWELIR  454 (523)
Q Consensus       413 ~~~~~~~~---~~~~~~~---------------~~~-----------------~~~~~~~-~~~~~l~i~~--~~~~~l~  454 (523)
                      .+......   .......               ...                 ....... .....+.+..  +..+.+.
T Consensus        88 l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  167 (270)
T PRK10513         88 LSYDDYLYLEKLSREVGVHFHALDRNTLYTANRDISYYTVHESFLTGIPLVFREVEKMDPNLQFPKVMMIDEPEILDAAI  167 (270)
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEEECCEEEEecCCcchhHHHhhhhccCCccccchhhccccCCceEEEEeCCHHHHHHHH
Confidence            11111100   0000000               000                 0000000 0011111111  1122222


Q ss_pred             hhCcchHh---hhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           455 DQMPELIP---RIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       455 ~~~~~~~~---~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      +.+...+.   ........+.++.|.  +|+.+++.|+++    .++|++||||.||++||+.||+||||+||.+++
T Consensus       168 ~~~~~~~~~~~~~~~s~~~~~eI~~~gvsKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~NA~~~v  244 (270)
T PRK10513        168 ARIPAEVKERYTVLKSAPYFLEILDKRVNKGTGVKSLAEHLGIKPEEVMAIGDQENDIAMIEYAGVGVAMGNAIPSV  244 (270)
T ss_pred             HHhHHHhcCcEEEEEecCeeEEEeCCCCChHHHHHHHHHHhCCCHHHEEEECCchhhHHHHHhCCceEEecCccHHH
Confidence            22221111   011112235567765  899999999986    478999999999999999999999999998764

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=99.74  E-value=3.1e-18  Score=167.71  Aligned_cols=180  Identities=18%  Similarity=0.237  Sum_probs=111.9

Q ss_pred             eeeeeccC-CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcch
Q psy78           339 GLIILENR-LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA  417 (523)
Q Consensus       339 G~i~~~d~-lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~  417 (523)
                      |++.-.+. +++.++++|++++++|++++++|||+...+.++.++++++.   ++++.||+.+... .+.+.....+...
T Consensus        12 GTLl~~~~~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~~~~~~~l~~~~---~~I~~NGa~i~~~-~~~i~~~~l~~~~   87 (264)
T COG0561          12 GTLLDSNKTISPETKEALARLREKGVKVVLATGRPLPDVLSILEELGLDG---PLITFNGALIYNG-GELLFQKPLSRED   87 (264)
T ss_pred             CCccCCCCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCCc---cEEEeCCeEEecC-CcEEeeecCCHHH
Confidence            44444444 99999999999999999999999999999999999999964   8999999988776 3333323222222


Q ss_pred             hhhhhhhcc---cC-----c---------h--hhh-------------hccCCC---ceEEEEecccHHHHHhhCcchHh
Q psy78           418 IQTKAKKLN---YS-----K---------T--EEE-------------LGLSSG---AYKFAVTGKSWELIRDQMPELIP  462 (523)
Q Consensus       418 ~~~~~~~~~---~~-----~---------~--~~~-------------~~~~~~---~~~l~i~~~~~~~l~~~~~~~~~  462 (523)
                      .........   ..     .         .  ...             ......   ...+....+......+.....+.
T Consensus        88 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  167 (264)
T COG0561          88 VEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELEDNKIIALDKDHEILEELVEALRKRFP  167 (264)
T ss_pred             HHHHHHHHHhccCceEEEEeccceeeccCCCcccccccccccccccccchhhcCcceEEEEecChHhHHHHHHHHhhhcc
Confidence            111110000   00     0         0  000             000000   01111112233333322222211


Q ss_pred             ----hhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           463 ----RIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       463 ----~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                          ..........++.|.  +|+.+++.+.++    .++|+||||+.||++||+.||.|||||||.+++
T Consensus       168 ~~~~~~~~s~~~~lei~~~g~~K~~al~~l~~~lgi~~~~v~afGD~~ND~~Ml~~ag~gvam~Na~~~~  237 (264)
T COG0561         168 DLGLTVSSSGPISLDITPKGVSKGYALQRLAKLLGIKLEEVIAFGDSTNDIEMLEVAGLGVAMGNADEEL  237 (264)
T ss_pred             ccceEEEEcCCceEEEecCCCchHHHHHHHHHHhCCCHHHeEEeCCccccHHHHHhcCeeeeccCCCHHH
Confidence                111122223666776  899999999995    357999999999999999999999999996653

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=99.74  E-value=3.7e-18  Score=167.97  Aligned_cols=175  Identities=11%  Similarity=0.057  Sum_probs=107.3

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh-
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK-  423 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~-  423 (523)
                      ..+.+++++||++|+++|++++++|||+...+..+.++++++   .++++.||+.+.+.....+.....+.+....... 
T Consensus        18 ~~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~I~~~~~~~l~~~~i~~~~~~~i~~~   94 (272)
T PRK15126         18 HHLGEKTLSTLARLRERDITLTFATGRHVLEMQHILGALSLD---AYLITGNGTRVHSLEGELLHRQDLPADVAELVLHQ   94 (272)
T ss_pred             CcCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHcCCC---CcEEecCCcEEEcCCCCEEEeecCCHHHHHHHHHH
Confidence            459999999999999999999999999999999999999985   4688999987765333222222222111111000 


Q ss_pred             --hcc--------------cCchh----------------hhhccCCCceEEEEe--cccHHHHHhhCcchHhh---hhc
Q psy78           424 --KLN--------------YSKTE----------------EELGLSSGAYKFAVT--GKSWELIRDQMPELIPR---IIV  466 (523)
Q Consensus       424 --~~~--------------~~~~~----------------~~~~~~~~~~~l~i~--~~~~~~l~~~~~~~~~~---~~~  466 (523)
                        ...              .....                ...........+.+.  .+..+.+.+.+...+..   ...
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~  174 (272)
T PRK15126         95 QWDTRASMHVFNDDGWFTGKEIPALLQAHVYSGFRYQLIDLKRLPAHGVTKICFCGDHDDLTRLQIQLNEALGERAHLCF  174 (272)
T ss_pred             hhhcCcEEEEEcCCeEEecCCcHHHHHHHHhcCCceEEecHHHccccCceEEEEECCHHHHHHHHHHHHHHhcCCEEEEE
Confidence              000              00000                000000011111111  12222222222111110   111


Q ss_pred             ccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           467 KGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       467 ~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ....+.++.|.  +|+.+++.|+++    .++|+|||||.||++||+.||+|||||||.+++
T Consensus       175 s~~~~~eI~~~g~sKg~al~~l~~~~gi~~~~v~afGD~~NDi~Ml~~ag~~vAm~Na~~~v  236 (272)
T PRK15126        175 SATDCLEVLPVGCNKGAALAVLSQHLGLSLADCMAFGDAMNDREMLGSVGRGFIMGNAMPQL  236 (272)
T ss_pred             cCCcEEEeecCCCChHHHHHHHHHHhCCCHHHeEEecCCHHHHHHHHHcCCceeccCChHHH
Confidence            11235567776  799999999987    468999999999999999999999999998764

>PRK10976 putative hydrolase; Provisional

Probab=99.71  E-value=3.6e-17  Score=160.42  Aligned_cols=175  Identities=14%  Similarity=0.101  Sum_probs=104.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .+++++++++|++++++|++++++|||+...+.++.++++++   .++++.||+.+.+.....+.....+......-...
T Consensus        18 ~~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~~~~~~~i~~~~l~~~~~~~i~~~   94 (266)
T PRK10976         18 HTLSPYAKETLKLLTARGIHFVFATGRHHVDVGQIRDNLEIK---SYMITSNGARVHDTDGNLIFSHNLDRDIASDLFGV   94 (266)
T ss_pred             CcCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC---CeEEEcCCcEEECCCCCEehhhcCCHHHHHHHHHh
Confidence            459999999999999999999999999999999999999985   46888898866543222221111111100000000


Q ss_pred             c------------------ccCchh----------------hhhccCCCceEEEEec---ccHHHHHhhCcchHhh---h
Q psy78           425 L------------------NYSKTE----------------EELGLSSGAYKFAVTG---KSWELIRDQMPELIPR---I  464 (523)
Q Consensus       425 ~------------------~~~~~~----------------~~~~~~~~~~~l~i~~---~~~~~l~~~~~~~~~~---~  464 (523)
                      .                  ......                ...........+.+..   +..+.+.+.+.+.+..   .
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~~~~~l~~~~~~~~~~  174 (266)
T PRK10976         95 VHDNPDIITNVYRDDEWFMNRHRPEEMRFFKEAVFKYQLYEPGLLEPDGVSKVFFTCDSHEKLLPLEQAINARWGDRVNV  174 (266)
T ss_pred             hcccCCEEEEEEcCCeEEEcCCChHHHHHHHhcCCcceeechhhcccCCceEEEEEcCCHHHHHHHHHHHHHHhCCcEEE
Confidence            0                  000000                0000000111111211   1222222211111110   0


Q ss_pred             hcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           465 IVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       465 ~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ......+.++.|.  +|+.+++.++++    .++|+|||||.||++||+.||+|||||||.+++
T Consensus       175 ~~s~~~~~eI~~~gvsKg~al~~l~~~lgi~~~~viafGD~~NDi~Ml~~ag~~vAm~NA~~~v  238 (266)
T PRK10976        175 SFSTLTCLEVMAGGVSKGHALEAVAKKLGYSLKDCIAFGDGMNDAEMLSMAGKGCIMGNAHQRL  238 (266)
T ss_pred             EEeCCceEEEEcCCCChHHHHHHHHHHcCCCHHHeEEEcCCcccHHHHHHcCCCeeecCCcHHH
Confidence            1111235566775  899999999986    478999999999999999999999999998754

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.68  E-value=2.2e-16  Score=155.09  Aligned_cols=181  Identities=14%  Similarity=0.121  Sum_probs=106.7

Q ss_pred             cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC-----ce
Q psy78           334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP-----KV  408 (523)
Q Consensus       334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~-----~~  408 (523)
                      |+|++.   -...+.+.++++|++|+++|++++++|||+...+.++++++|++.  .++++.||+.+......     ..
T Consensus        15 DGTLL~---~~~~i~~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~~l~~~~--~~~I~~NGa~I~~~~~~~~~~~~~   89 (271)
T PRK03669         15 DGTLLD---SHTYDWQPAAPWLTRLREAQVPVILCSSKTAAEMLPLQQTLGLQG--LPLIAENGAVIQLDEQWQDHPDFP   89 (271)
T ss_pred             ccCCcC---CCCcCcHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHhCCCC--CcEEEeCCCEEEecCcccCCCCce
Confidence            455553   133477899999999999999999999999999999999999852  47999999877643221     11


Q ss_pred             EEE-ecCcchhh---hhhhhc-ccC--------ch----------hh-h-hccCCCceEEEEec--ccHHHHHhhCcchH
Q psy78           409 YFT-VSGVSAIQ---TKAKKL-NYS--------KT----------EE-E-LGLSSGAYKFAVTG--KSWELIRDQMPELI  461 (523)
Q Consensus       409 ~~~-~~~~~~~~---~~~~~~-~~~--------~~----------~~-~-~~~~~~~~~l~i~~--~~~~~l~~~~~~~~  461 (523)
                      .+. ..+.+...   ...... ...        ..          .. . .........+....  +.+..+.+......
T Consensus        90 ~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  169 (271)
T PRK03669         90 RIISGISHGEIRQVLNTLREKEGFKFTTFDDVDDATIAEWTGLSRSQAALARLHEASVTLIWRDSDERMAQFTARLAELG  169 (271)
T ss_pred             EeecCCCHHHHHHHHHHHHHhcCCceeecccCCHHHHHHHhCCCHHHHHHHhccccCceeEecCCHHHHHHHHHHHHHCC
Confidence            111 11111111   100000 000        00          00 0 00000011122221  12222222211100


Q ss_pred             hhhhcccEEEEcCChH--hHHHHHHHHHHC-------CCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           462 PRIIVKGAIFARMSSD--QKQQLVLELQQL-------GYYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       462 ~~~~~~~~v~~~~~p~--~K~~~i~~L~~~-------~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      ..... ...+.++.|.  +|+.+++.|+++       .++|+|||||.||++||+.||+||||||+.+
T Consensus       170 ~~~~~-~~~~iEi~~~g~sKg~al~~l~~~lgi~~~~~~~viafGDs~NDi~Ml~~ag~gvAM~~~~~  236 (271)
T PRK03669        170 LQFVQ-GARFWHVLDASAGKDQAANWLIATYQQLSGTRPTTLGLGDGPNDAPLLDVMDYAVVVKGLNR  236 (271)
T ss_pred             CEEEe-cCeeEEEecCCCCHHHHHHHHHHHHHhhcCCCceEEEEcCCHHHHHHHHhCCEEEEecCCCC
Confidence            01111 1124566765  899999999884       3679999999999999999999999998773

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=99.67  E-value=1.1e-16  Score=151.76  Aligned_cols=173  Identities=16%  Similarity=0.177  Sum_probs=105.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .++.+++.++|++|+++|++++++|||++..+..++++++++   .++++.||+.+..... .+................
T Consensus        17 ~~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~~~~~l~~~---~~~i~~NGa~i~~~~~-~~~~~~~~~~~~~~~~~~   92 (215)
T TIGR01487        17 RMISERAIEAIRKAEKKGIPVSLVTGNTVPFARALAVLIGTS---GPVVAENGGVIFYNKE-DIFLANMEEEWFLDEEKK   92 (215)
T ss_pred             cccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHHHHHHhCCC---CcEEEccCcEEEeCCC-cEEEecccchhhHHHhhh
Confidence            359999999999999999999999999999999999999875   4688889987765432 222221111111110000


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcC
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGD  498 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GD  498 (523)
                      .....................+.+..+.+.+.....-...... ..+.++.|.  +|+.+++.++++    .+++++|||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i~iGD  171 (215)
T TIGR01487        93 KRFPRDRLSNEYPRASLVIMREGKDVDEVREIIKERGLNLVDS-GFAIHIMKKGVDKGVGVEKLKELLGIKPEEVAAIGD  171 (215)
T ss_pred             hhhhhhhcccccceeEEEEecCCccHHHHHHHHHhCCeEEEec-CceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECC
Confidence            0000000000000111222233333333322211100001111 123455554  899999999885    356999999


Q ss_pred             ChhhHHHHHhCCccEEecccCCCC
Q psy78           499 GANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       499 G~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      +.||++|++.||+|+||+||.+++
T Consensus       172 s~ND~~ml~~ag~~vam~na~~~~  195 (215)
T TIGR01487       172 SENDIDLFRVVGFKVAVANADDQL  195 (215)
T ss_pred             CHHHHHHHHhCCCeEEcCCccHHH
Confidence            999999999999999999998764

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>PLN02887 hydrolase family protein

Probab=99.66  E-value=1.1e-16  Score=170.00  Aligned_cols=186  Identities=16%  Similarity=0.139  Sum_probs=110.0

Q ss_pred             cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCC------CeEEEeecCCCCCCCCCc
Q psy78           334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG------ETVVDVSAVPGGLKECPK  407 (523)
Q Consensus       334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~------~~~i~~ng~~~~~~~~~~  407 (523)
                      |+|++.   -..++.+.+++||++++++|++++++|||+...+..+.++++++...      .+.++.||+.+.+.....
T Consensus       316 DGTLLn---~d~~Is~~t~eAI~kl~ekGi~~vIATGR~~~~i~~~l~~L~l~~~~~~I~~~~p~I~~NGA~I~d~~g~~  392 (580)
T PLN02887        316 DGTLLN---SKSQISETNAKALKEALSRGVKVVIATGKARPAVIDILKMVDLAGKDGIISESSPGVFLQGLLVYGRQGRE  392 (580)
T ss_pred             CCCCCC---CCCccCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHhCcccccceEeecccEEeecCeEEEECCCcE
Confidence            455553   23459999999999999999999999999999999999999876432      357778988776433333


Q ss_pred             eEEEecCcchhhhhhhhc---cc--------------Cch-----h-------------hhhc-cCCCceEEEEeccc--
Q psy78           408 VYFTVSGVSAIQTKAKKL---NY--------------SKT-----E-------------EELG-LSSGAYKFAVTGKS--  449 (523)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~---~~--------------~~~-----~-------------~~~~-~~~~~~~l~i~~~~--  449 (523)
                      +.....+.+.........   ..              ...     .             .... .......+.+.+..  
T Consensus       393 I~~~~L~~e~v~eIi~~~~~~~i~~~~~~~d~~y~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~i~Ki~~~~~~e~  472 (580)
T PLN02887        393 IYRSNLDQEVCREACLYSLEHKIPLIAFSQDRCLTLFDHPLVDSLHTIYHEPKAEIMSSVDQLLAAADIQKVIFLDTAEG  472 (580)
T ss_pred             EEEEeCCHHHHHHHHHHHHHcCCeEEEEECCeEEEecCchHHHHHHHhhccccccccCCHHHhhcccCeeEEEEEcChHH
Confidence            333322222111100000   00              000     0             0000 00001111111111  


Q ss_pred             -HHHHHhhCcchHh---hhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           450 -WELIRDQMPELIP---RIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       450 -~~~l~~~~~~~~~---~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                       .+.+.+.....+.   ........+.++.|.  +|+.+++.|+++    .++|+|||||.||++||+.||+|||||||.
T Consensus       473 ~~~~l~~~l~~~~~~~~~v~~S~~~~lEI~p~gvSKG~ALk~L~e~lGI~~eeviAFGDs~NDIeMLe~AG~gVAMgNA~  552 (580)
T PLN02887        473 VSSVLRPYWSEATGDRANVVQAQPDMLEIVPPGTSKGNGVKMLLNHLGVSPDEIMAIGDGENDIEMLQLASLGVALSNGA  552 (580)
T ss_pred             HHHHHHHHHHHHhcCcEEEEEecCcEEEEecCCCCHHHHHHHHHHHcCCCHHHEEEEecchhhHHHHHHCCCEEEeCCCC
Confidence             1111111111110   011111235566666  899999999997    468999999999999999999999999998


Q ss_pred             CCC
Q psy78           520 SPI  522 (523)
Q Consensus       520 ~~v  522 (523)
                      ++|
T Consensus       553 eeV  555 (580)
T PLN02887        553 EKT  555 (580)
T ss_pred             HHH
Confidence            754

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=99.65  E-value=4.7e-17  Score=157.67  Aligned_cols=174  Identities=18%  Similarity=0.266  Sum_probs=110.0

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQTKA  422 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~~~  422 (523)
                      ..++.++++++|++++++|++++++|||++..+..+.+++++.   .++++.||+.+ ........+.. .+......-.
T Consensus        13 ~~~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~---~~~I~~nGa~i-~~~~~~~l~~~~i~~~~~~~i~   88 (254)
T PF08282_consen   13 DGKISPETIEALKELQEKGIKLVIATGRSYSSIKRLLKELGID---DYFICSNGALI-DDPKGKILYEKPIDSDDVKKIL   88 (254)
T ss_dssp             TSSSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHHHTTHC---SEEEEGGGTEE-EETTTEEEEEESB-HHHHHHHH
T ss_pred             CCeeCHHHHHHHHhhcccceEEEEEccCcccccccccccccch---hhhccccccee-eecccccchhhheeccchhhee
Confidence            4568999999999999999999999999999999999999986   78999999988 33333333322 2211111000


Q ss_pred             ---hh--cc-----------cCc-------------------hhhhh--ccCCCceEEEEecccHHHHHhhCcchHhhh-
Q psy78           423 ---KK--LN-----------YSK-------------------TEEEL--GLSSGAYKFAVTGKSWELIRDQMPELIPRI-  464 (523)
Q Consensus       423 ---~~--~~-----------~~~-------------------~~~~~--~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~-  464 (523)
                         ..  +.           ...                   .....  .....+..+..+.+.++.+.+.+.+.+... 
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~l~~~l~~~~~~~~  168 (254)
T PF08282_consen   89 KYLKEHNISFFFYTDDDIYIYENKDEEELFFEHKFFNFKESIVSEDDLEDEEIFKILFFPDPEDLEQLREELKKKFPNLI  168 (254)
T ss_dssp             HHHHHTTCEEEEEESSEEEESSTTCHHHHHHHHHHTSCEEEESHHHHHHCSSESEEEEESCHHHHHHHHHHHHHHHTTTE
T ss_pred             ehhhhcccccccccceeeecccccccchhhhhhcccccccccccccccccccceeeeccccchhhhhhhhhhccccCcce
Confidence               00  00           000                   00000  001111222222333444444333333221 


Q ss_pred             --hcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           465 --IVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       465 --~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                        ......+.+++|.  +|+.+++.+.++    .+++++|||+.||++||+.||.||||+||.++
T Consensus       169 ~~~~~~~~~lei~~~~vsK~~ai~~l~~~~~i~~~~~~~~GD~~ND~~Ml~~~~~~~am~na~~~  233 (254)
T PF08282_consen  169 DVVRSSPYFLEITPKGVSKGSAIKYLLEYLGISPEDIIAFGDSENDIEMLELAGYSVAMGNATPE  233 (254)
T ss_dssp             EEEEEETTEEEEEETTSSHHHHHHHHHHHHTTSGGGEEEEESSGGGHHHHHHSSEEEEETTS-HH
T ss_pred             eEEEecccceEEeeCCCCHHHHHHHHhhhcccccceeEEeecccccHhHHhhcCeEEEEcCCCHH
Confidence              1111235566665  899999999985    47899999999999999999999999999865

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=99.64  E-value=9.1e-16  Score=146.54  Aligned_cols=172  Identities=15%  Similarity=0.150  Sum_probs=103.0

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhh-hhhh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQT-KAKK  424 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~-~~~~  424 (523)
                      .+.++++++|++++++|++++++|||++..+..+++++|+.   .++++.||..+.........+.......... ....
T Consensus        15 ~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~~~l~~~---~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~   91 (225)
T TIGR01482        15 AINESALEAIRKAESVGIPVVLVTGNSVQFARALAKLIGTP---DPVIAENGGEISYNEGMDDIFLAYLEEEWFLDIVIA   91 (225)
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC---CeEEEecCcEEEeCCCCceEEecccCHHHHHHHHHh
Confidence            58999999999999999999999999999999999999853   5788999987655433222222111111110 0000


Q ss_pred             cccCchhhhhc--cCCCceEEEEec--ccHHHHHhhCcchHhhhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEE
Q psy78           425 LNYSKTEEELG--LSSGAYKFAVTG--KSWELIRDQMPELIPRIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVA  494 (523)
Q Consensus       425 ~~~~~~~~~~~--~~~~~~~l~i~~--~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~  494 (523)
                      ...........  ............  +....+.+.....+. .. ....+.++.|.  +|+.+++.++++    .++++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ei~~~~~~K~~~i~~l~~~~~i~~~~~i  169 (225)
T TIGR01482        92 KTFPFSRLKVQYPRRASLVKMRYGIDVDTVREIIKELGLNLV-AV-DSGFDIHILPQGVNKGVAVKKLKEKLGIKPGETL  169 (225)
T ss_pred             cccchhhhccccccccceEEEeecCCHHHHHHHHHhcCceEE-Ee-cCCcEEEEeeCCCCHHHHHHHHHHHhCCCHHHEE
Confidence            00000000000  000111111111  111222222111000 00 11224455554  899999999886    46899


Q ss_pred             EEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           495 MCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       495 a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      +|||+.||++|++.||+||||+||.+++
T Consensus       170 ~~GD~~NDi~m~~~ag~~vam~Na~~~~  197 (225)
T TIGR01482       170 VCGDSENDIDLFEVPGFGVAVANAQPEL  197 (225)
T ss_pred             EECCCHhhHHHHHhcCceEEcCChhHHH
Confidence            9999999999999999999999998753

catalyze the same reaction as SPP.

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=99.62  E-value=6.6e-16  Score=148.02  Aligned_cols=173  Identities=20%  Similarity=0.152  Sum_probs=103.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhh---hhh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQ---TKA  422 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~---~~~  422 (523)
                      .++++++++|++++++|++++++|||+...+..++++++++   .++++.||+.+.........+.... +...   ...
T Consensus        20 ~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~i~~nGa~i~~~~~~~~~~~~~~-~~~~~~~~~~   95 (230)
T PRK01158         20 RLSLKAVEAIRKAEKLGIPVILATGNVLCFARAAAKLIGTS---GPVIAENGGVISVGFDGKRIFLGDI-EECEKAYSEL   95 (230)
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHHHHhCCC---CcEEEecCeEEEEcCCCCEEEEcch-HHHHHHHHHH
Confidence            48999999999999999999999999999999999999985   4689999987654422222222111 1111   100


Q ss_pred             hh-cccCchhhhhccC-C-CceEEEEecccHHHHHhhCcchHhhh-hcccEEEEcCChH--hHHHHHHHHHHC----CCE
Q psy78           423 KK-LNYSKTEEELGLS-S-GAYKFAVTGKSWELIRDQMPELIPRI-IVKGAIFARMSSD--QKQQLVLELQQL----GYY  492 (523)
Q Consensus       423 ~~-~~~~~~~~~~~~~-~-~~~~l~i~~~~~~~l~~~~~~~~~~~-~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~  492 (523)
                      .. ............. . ............+.+.+......... ......+.++.|.  +|+.+++.+.++    .++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ei~~~~~~Kg~al~~l~~~~~i~~~~  175 (230)
T PRK01158         96 KKRFPEASTSLTKLDPDYRKTEVALRRTVPVEEVRELLEELGLDLEIVDSGFAIHIKSPGVNKGTGLKKLAELMGIDPEE  175 (230)
T ss_pred             HHhccccceeeecCCcccccceeeecccccHHHHHHHHHHcCCcEEEEecceEEEEeeCCCChHHHHHHHHHHhCCCHHH
Confidence            00 0000000000000 0 00011112222222221111000000 0011123455555  699999999886    467


Q ss_pred             EEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           493 VAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       493 V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      +++|||+.||++|++.||+||||+||.+++
T Consensus       176 ~i~~GD~~NDi~m~~~ag~~vam~Na~~~v  205 (230)
T PRK01158        176 VAAIGDSENDLEMFEVAGFGVAVANADEEL  205 (230)
T ss_pred             EEEECCchhhHHHHHhcCceEEecCccHHH
Confidence            999999999999999999999999998754

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=99.62  E-value=8e-16  Score=145.54  Aligned_cols=98  Identities=45%  Similarity=0.658  Sum_probs=91.2

Q ss_pred             ccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe
Q psy78           333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV  412 (523)
Q Consensus       333 ~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~  412 (523)
                      .+..++|.+.+.|+++++++++|++|+++|++++|+|||+..++..+++++||..                         
T Consensus       114 ~~~~~~~~~~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~-------------------------  168 (215)
T PF00702_consen  114 VNLIFLGLFGLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFD-------------------------  168 (215)
T ss_dssp             ESHEEEEEEEEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCS-------------------------
T ss_pred             ecCeEEEEEeecCcchhhhhhhhhhhhccCcceeeeecccccccccccccccccc-------------------------
Confidence            3799999999999999999999999999999999999999999999999999941                         


Q ss_pred             cCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcC--ChHhH--HHHHHHHHH
Q psy78           413 SGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARM--SSDQK--QQLVLELQQ  488 (523)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~--~p~~K--~~~i~~L~~  488 (523)
                                                                             ..++++.  +|++|  ..+++.|+.
T Consensus       169 -------------------------------------------------------~~v~a~~~~kP~~k~~~~~i~~l~~  193 (215)
T PF00702_consen  169 -------------------------------------------------------SIVFARVIGKPEPKIFLRIIKELQV  193 (215)
T ss_dssp             -------------------------------------------------------EEEEESHETTTHHHHHHHHHHHHTC
T ss_pred             -------------------------------------------------------ccccccccccccchhHHHHHHHHhc
Confidence                                                                   1478888  99999  999999997


Q ss_pred             CCCEEEEEcCChhhHHHHHhCC
Q psy78           489 LGYYVAMCGDGANDCGALRAAH  510 (523)
Q Consensus       489 ~~~~V~a~GDG~ND~~MLk~A~  510 (523)
                      .++.|+|+|||.||++|+++||
T Consensus       194 ~~~~v~~vGDg~nD~~al~~Ag  215 (215)
T PF00702_consen  194 KPGEVAMVGDGVNDAPALKAAG  215 (215)
T ss_dssp             TGGGEEEEESSGGHHHHHHHSS
T ss_pred             CCCEEEEEccCHHHHHHHHhCc
Confidence            7779999999999999999997

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=99.61  E-value=2.9e-15  Score=145.94  Aligned_cols=170  Identities=14%  Similarity=0.087  Sum_probs=101.3

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCc------eEEEecCcchhhh
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK------VYFTVSGVSAIQT  420 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~------~~~~~~~~~~~~~  420 (523)
                      ..+.++++|++|+++|++++++|||++..+..+++++|++   +++++.||+.+.......      +.....+......
T Consensus        17 ~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~~~~~~---~~~I~~NGa~i~~~~~~~~~~~~~~~~~~i~~~~~~~   93 (256)
T TIGR01486        17 DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLRKELGLE---DPFIVENGGAIYGPRGWFTEPEYPVIALGIPYEKIRA   93 (256)
T ss_pred             CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC---CcEEEcCCeEEEeCCCcccCCCeEEEEcCCCHHHHHH
Confidence            5567999999999999999999999999999999999985   578999998766543322      1222222111111


Q ss_pred             hhhh------cccCch----h-------------hhhc-cCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCCh
Q psy78           421 KAKK------LNYSKT----E-------------EELG-LSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSS  476 (523)
Q Consensus       421 ~~~~------~~~~~~----~-------------~~~~-~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p  476 (523)
                      ....      ......    .             .... .......+....+..+.+.+.....-...... ..+.++.|
T Consensus        94 il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~~~ei~~  172 (256)
T TIGR01486        94 RLEELSEELGFKFRGLGDLTDAEIAELTGLSRELAALAQRREYSETILWSEERRERFTEALVELGLEVTHG-NRFYHVLG  172 (256)
T ss_pred             HHHHHHHHhCCCccchhhCCHHHHHHHhCcCHHHHHHHhhCccCCceecChHHHHHHHHHHHHcCCEEEeC-CceEEEec
Confidence            0000      000000    0             0000 00011111112222222222211100011111 12445555


Q ss_pred             H--hHHHHHHHHHHC------CCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           477 D--QKQQLVLELQQL------GYYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       477 ~--~K~~~i~~L~~~------~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      .  +|+.+++.++++      .+++++|||+.||++||+.||+||||+||.+
T Consensus       173 ~~~~Kg~ai~~l~~~~~i~~~~~~~~a~GD~~ND~~Ml~~ag~~vam~Na~~  224 (256)
T TIGR01486       173 AGSDKGKAANALKQFYNQPGGAIKVVGLGDSPNDLPLLEVVDLAVVVPGPNG  224 (256)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCceEEEEcCCHhhHHHHHHCCEEEEeCCCCC
Confidence            4  899999999875      4679999999999999999999999999984

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=99.60  E-value=9e-16  Score=176.15  Aligned_cols=116  Identities=28%  Similarity=0.479  Sum_probs=105.6

Q ss_pred             ChHHHHHHHHHHHHHHhhhhcccccccccc--CCCCccCCccchhHHHHHHHHHHhhheeeecCCCcccccccchhHHHH
Q psy78             1 MFFQLILMVSMQIISFIIVHKFAWFEPFVY--TNAISYSCYENYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILS   78 (523)
Q Consensus         1 ~~~q~~i~~~~q~~~~~~~~~q~w~~~~~~--~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~   78 (523)
                      +++|.++++++++++|.++.+|+||.|..+  .++++.+|++||++|++++|||+.+++++|.|+|||+|+|+|++|+++
T Consensus       936 i~~q~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~T~~f~~~~~~~~~~~~~~~~g~pf~~~~~~N~~~~~~ 1015 (1054)
T TIGR01657       936 VLIQFVLHILSQVYLVFELHAQPWYKPENPVDLEKENFPNLLNTVLFFVSSFQYLITAIVNSKGPPFREPIYKNKPFVYL 1015 (1054)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCccCCCCCCcccccCccHHHHHHHHHHHHHHHHheEEEcCCcchhhhHHHhHHHHHH
Confidence            468999999999999999999999977654  234678999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHH
Q psy78            79 IIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIY  117 (523)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~  117 (523)
                      +++.+++.+++++.+.++++++|+++++|. +||+.+++
T Consensus      1016 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~l~~ 1053 (1054)
T TIGR01657      1016 LITGLGLLLVLLLDPHPLLGKILQIVPLPQ-EFRSKLLV 1053 (1054)
T ss_pred             HHHHHHHHHHhhhCCCHHHHhhheeeeCCH-HHHHHHhh
Confidence            999999999899989999999999999984 89988774

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=99.60  E-value=2.5e-15  Score=147.77  Aligned_cols=175  Identities=14%  Similarity=0.115  Sum_probs=103.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEE-ecCcchhhh---
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFT-VSGVSAIQT---  420 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~-~~~~~~~~~---  420 (523)
                      .++.++++++|++++++|++++++|||++..+..++++++++   .++++.||+.+.+.....+.+. ..+.+....   
T Consensus        19 ~~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~d~~~~~~l~~~~l~~~~~~~i~~   95 (272)
T PRK10530         19 KTILPESLEALARAREAGYKVIIVTGRHHVAIHPFYQALALD---TPAICCNGTYLYDYQAKKVLEADPLPVQQALQVIE   95 (272)
T ss_pred             CccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHhcCCC---CCEEEcCCcEEEecCCCEEEEecCCCHHHHHHHHH
Confidence            358999999999999999999999999999999999999985   4689999988765433333322 111111110   


Q ss_pred             hhhhccc-------------Cchh-h------------------------hh--ccCCCceEEEEeccc---HHHHHhhC
Q psy78           421 KAKKLNY-------------SKTE-E------------------------EL--GLSSGAYKFAVTGKS---WELIRDQM  457 (523)
Q Consensus       421 ~~~~~~~-------------~~~~-~------------------------~~--~~~~~~~~l~i~~~~---~~~l~~~~  457 (523)
                      .......             .... .                        ..  ........+......   ...+.+..
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  175 (272)
T PRK10530         96 MLDEHQIHGLMYVDDAMLYEHPTGHVIRTLNWAQTLPPEQRPTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHV  175 (272)
T ss_pred             HHHhCCcEEEEEcCCceEecCchHHHHHHhhhhhccchhcccceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHH
Confidence            0000000             0000 0                        00  000011112222111   11111111


Q ss_pred             cchHhh-hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           458 PELIPR-IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       458 ~~~~~~-~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      .+.+.. .......+.++.|.  +|+.+++.++++    .++++||||+.||++|++.||+|||||||.+++
T Consensus       176 ~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgna~~~l  247 (272)
T PRK10530        176 EHELGLECEWSWHDQVDIARKGNSKGKRLTQWVEAQGWSMKNVVAFGDNFNDISMLEAAGLGVAMGNADDAV  247 (272)
T ss_pred             hhhcCceEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHeEEeCCChhhHHHHHhcCceEEecCchHHH
Confidence            111000 00000112344544  799999999886    468999999999999999999999999997653

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.57  E-value=1.1e-14  Score=143.16  Aligned_cols=175  Identities=15%  Similarity=0.116  Sum_probs=103.7

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC-------------ceEE
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP-------------KVYF  410 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~-------------~~~~  410 (523)
                      .+.+.++++++|++|+++|++++++|||+...+..+++++|++   .+.++.||..+......             ...+
T Consensus        19 ~~~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~~~~~~l~l~---~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~   95 (273)
T PRK00192         19 HTYSYEPAKPALKALKEKGIPVIPCTSKTAAEVEVLRKELGLE---DPFIVENGAAIYIPKNYFPFQPDGERLKGDYWVI   95 (273)
T ss_pred             CCcCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---CCEEEEcCcEEEecccccccCCccccccCCceEE
Confidence            3457889999999999999999999999999999999999985   36888888866532211             1122


Q ss_pred             -EecCcchhhhhh----hhcc--cCch---------------h---hhhccCCCceEEE-E-ecccHHHHHhhCcchHhh
Q psy78           411 -TVSGVSAIQTKA----KKLN--YSKT---------------E---EELGLSSGAYKFA-V-TGKSWELIRDQMPELIPR  463 (523)
Q Consensus       411 -~~~~~~~~~~~~----~~~~--~~~~---------------~---~~~~~~~~~~~l~-i-~~~~~~~l~~~~~~~~~~  463 (523)
                       ...+.+......    ....  ....               .   ...........+. . +.+..+.+.+.+......
T Consensus        96 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  175 (273)
T PRK00192         96 ELGPPYEELREILDEISDELGYPLKGFGDLSAEEVAELTGLSGESARLAKDREFSEPFLWNGSEAAKERFEEALKRLGLK  175 (273)
T ss_pred             EcCCCHHHHHHHHHHHHHHhCCCeeehhhCCHHHHHHHhCcCHHHHHHHHhcccCCceeecCchHHHHHHHHHHHHcCCE
Confidence             111211111100    0000  0000               0   0000000011111 1 222233332211110000


Q ss_pred             hhcccEEEEcCChH-hHHHHHHHHHHC----C-CEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           464 IIVKGAIFARMSSD-QKQQLVLELQQL----G-YYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       464 ~~~~~~v~~~~~p~-~K~~~i~~L~~~----~-~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ... ...+.++.|. +|+.+++.+.++    . +++++|||+.||++|++.||+|+||+||.+++
T Consensus       176 ~~~-~~~~~ei~~~~~Kg~al~~l~~~~~i~~~~~v~~~GDs~NDi~m~~~ag~~vam~NA~~~~  239 (273)
T PRK00192        176 VTR-GGRFLHLLGGGDKGKAVRWLKELYRRQDGVETIALGDSPNDLPMLEAADIAVVVPGPDGPN  239 (273)
T ss_pred             EEE-CCeEEEEeCCCCHHHHHHHHHHHHhccCCceEEEEcCChhhHHHHHhCCeeEEeCCCCCCC
Confidence            001 1123344443 899999999875    6 89999999999999999999999999999874

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=99.56  E-value=6.7e-15  Score=143.46  Aligned_cols=174  Identities=16%  Similarity=0.222  Sum_probs=105.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh-
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK-  423 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~-  423 (523)
                      .++++++.++|++++++|++++++|||+...+..+.++++++   .++++.||+.+.......+.....+......... 
T Consensus        15 ~~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~---~~~I~~NGa~i~~~~~~~i~~~~i~~~~~~~i~~~   91 (256)
T TIGR00099        15 HTISPSTKEALAKLREKGIKVVLATGRPYKEVKNILKELGLD---TPFITANGAAVIDDQGEILYKKPLDLDLVEEILNF   91 (256)
T ss_pred             CccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCC---CCEEEcCCcEEECCCCCEEeecCCCHHHHHHHHHH
Confidence            358999999999999999999999999999999999999875   3688899987765432222222211111110000 


Q ss_pred             --hcc-------------cCc--h--h--hh-------------hccCCCceEEEEec--ccHHHHHhhCcc-hHhh---
Q psy78           424 --KLN-------------YSK--T--E--EE-------------LGLSSGAYKFAVTG--KSWELIRDQMPE-LIPR---  463 (523)
Q Consensus       424 --~~~-------------~~~--~--~--~~-------------~~~~~~~~~l~i~~--~~~~~l~~~~~~-~~~~---  463 (523)
                        ...             ...  .  .  ..             .........+.+..  +..+.+.+.... .+..   
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (256)
T TIGR00099        92 LKKHGLDVILYGDDSIYASKNDPEYFTIFKKFLGEPKLEVVDIQYLPDDILKILLLFLDPEDLDLLIEALNKLELEENVS  171 (256)
T ss_pred             HHHcCcEEEEEeCCeEEecCCCcchhHHHHHhccCCcceeccchhhhcccceEEEEECCHHHHHHHHHHhhhhhhcCCEE
Confidence              000             000  0  0  00             00000011111211  222333332221 1110   


Q ss_pred             hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           464 IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       464 ~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      .......+.++.|.  +|+.+++.++++    .+++++|||+.||++|++.||+|+||+||.++
T Consensus       172 ~~~s~~~~leI~~~~~~K~~~i~~~~~~~~~~~~~~~~~GD~~nD~~m~~~~~~~~a~~na~~~  235 (256)
T TIGR00099       172 VVSSGPYSIEITAKGVSKGSALQSLAEALGISLEDVIAFGDGMNDIEMLEAAGYGVAMGNADEE  235 (256)
T ss_pred             EEEecCceEEecCCCCChHHHHHHHHHHcCCCHHHEEEeCCcHHhHHHHHhCCceeEecCchHH
Confidence            11112235566665  799999999986    36899999999999999999999999998765

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=99.49  E-value=1.2e-13  Score=131.63  Aligned_cols=166  Identities=14%  Similarity=0.152  Sum_probs=98.5

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCc-e-----EEEecCcchhhh
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK-V-----YFTVSGVSAIQT  420 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~-~-----~~~~~~~~~~~~  420 (523)
                      ..+.++++|++|+++|++++++|||+...+..+.++++++  ..++++.||+.+.+..... .     .....+......
T Consensus        17 ~~~~~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~~~l~~~--~~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (221)
T TIGR02463        17 DWQPAAPWLTRLQEAGIPVILCTSKTAAEVEYLQKALGLT--GDPYIAENGAAIHLEELWREEPGYPRIILGISYGIIRL   94 (221)
T ss_pred             CcHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC--CCcEEEeCCcEEEcCcccccCCCceEEecCCCHHHHHH
Confidence            4555999999999999999999999999999999999985  2579999999876543222 1     111112111111


Q ss_pred             hhh------hcccCch----h---h----------hhc-cCCCceEEEE--ecccHHHHHhhCcchHhhhhcccEEEEcC
Q psy78           421 KAK------KLNYSKT----E---E----------ELG-LSSGAYKFAV--TGKSWELIRDQMPELIPRIIVKGAIFARM  474 (523)
Q Consensus       421 ~~~------~~~~~~~----~---~----------~~~-~~~~~~~l~i--~~~~~~~l~~~~~~~~~~~~~~~~v~~~~  474 (523)
                      ...      .......    .   .          ... .......+..  +.+..+.+.+.....-..... ...+.++
T Consensus        95 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ei  173 (221)
T TIGR02463        95 VLETLSEELHFKFTPFDDLSDAEIAELTGLSGSQAALAQDREASVPLLWRDSDSRMPRFTALLADLGLAIVQ-GNRFSHV  173 (221)
T ss_pred             HHHHHHHHhCCCceehhhCCHHHHHHHhCcCHHHHHHHHhccCCccEEecCchhHHHHHHHHHHHcCCeEEe-cCCeeEE
Confidence            000      0000000    0   0          000 0011112222  222233222211110000111 1234566


Q ss_pred             ChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEe
Q psy78           475 SSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISL  515 (523)
Q Consensus       475 ~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAM  515 (523)
                      .|.  +|+.+++.++++    .++|++|||+.||++||+.||+|||+
T Consensus       174 ~~~~~~Kg~al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~  220 (221)
T TIGR02463       174 LGASSSKGKAANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVI  220 (221)
T ss_pred             ecCCCCHHHHHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEe
Confidence            665  799999999886    57899999999999999999999996

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=99.46  E-value=2.1e-13  Score=129.77  Aligned_cols=174  Identities=14%  Similarity=0.112  Sum_probs=100.3

Q ss_pred             eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCC-------------
Q psy78           339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKEC-------------  405 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~-------------  405 (523)
                      |++.-.+...++++++|++|+++|++++++|||++..+..+++++|+.   .++++.||+.+.....             
T Consensus         8 GTLl~~~~~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~~~~lg~~---~~~I~~NGa~I~~~~~~~~~~~~~~~~~~   84 (225)
T TIGR02461         8 GTLLPPGYEPGPAREALEELKDLGFPIVFVSSKTRAEQEYYREELGVE---PPFIVENGGAIFIPRGYFPFPVGAGREVG   84 (225)
T ss_pred             CCCcCCCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC---CcEEEcCCcEEEecCccccccccccccCC
Confidence            333334567778999999999999999999999999999999999985   3689999988765332             


Q ss_pred             CceEEE-ecCcchhhhh---hhh-cccCc---h-hh---------------hhccCCCceEEEEecccHHHHHhhCcchH
Q psy78           406 PKVYFT-VSGVSAIQTK---AKK-LNYSK---T-EE---------------ELGLSSGAYKFAVTGKSWELIRDQMPELI  461 (523)
Q Consensus       406 ~~~~~~-~~~~~~~~~~---~~~-~~~~~---~-~~---------------~~~~~~~~~~l~i~~~~~~~l~~~~~~~~  461 (523)
                      ....+. ..........   ... .....   . ..               .......+..+..+.+.+..+.+..+...
T Consensus        85 ~~~i~~~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~e~~~~~~~~~~~~~  164 (225)
T TIGR02461        85 NYEVIELGKPVAKIRAALKEAENEYGLKYYGNSTAEEVEKLTGLPRELAPLAKRREYSETIFLWSREGWEAILVTARARG  164 (225)
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHHhcCccchhcCCHHHHHHHHCcCHHHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHcC
Confidence            222222 2222111111   100 00000   0 00               00000001111112222333222221100


Q ss_pred             hhhhcccEEEEcCC-hHhHHHHHHHHHHC------CCEEEEEcCChhhHHHHHhCCccEEec
Q psy78           462 PRIIVKGAIFARMS-SDQKQQLVLELQQL------GYYVAMCGDGANDCGALRAAHAGISLS  516 (523)
Q Consensus       462 ~~~~~~~~v~~~~~-p~~K~~~i~~L~~~------~~~V~a~GDG~ND~~MLk~A~vGIAMg  516 (523)
                      ......... ..+. ..+|+.+++.+.+.      ..++++|||+.||++||+.||+||+.|
T Consensus       165 ~~~~~s~~~-~~i~~~~sK~~al~~l~~~~~~~~~~~~~i~~GD~~nD~~ml~~ag~~v~v~  225 (225)
T TIGR02461       165 LKYTHGGRF-YTVHGGSDKGKAIKRLLDLYKLRPGAIESVGLGDSENDFPMFEVVDLAFLVG  225 (225)
T ss_pred             CcEEECCEE-EEECCCCCHHHHHHHHHHHhccccCcccEEEEcCCHHHHHHHHhCCCcEecC
Confidence            011111222 2233 34899999999875      236999999999999999999999986

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=99.44  E-value=5.4e-13  Score=109.83  Aligned_cols=100  Identities=31%  Similarity=0.396  Sum_probs=91.4

Q ss_pred             ceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecC
Q psy78           335 LEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSG  414 (523)
Q Consensus       335 l~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~  414 (523)
                      +.+.++++--.++-+++.++|++|++. ++++++|||...+....|+..|++..                          
T Consensus        19 ~~v~~tiatgGklf~ev~e~iqeL~d~-V~i~IASgDr~gsl~~lae~~gi~~~--------------------------   71 (152)
T COG4087          19 GKVLYTIATGGKLFSEVSETIQELHDM-VDIYIASGDRKGSLVQLAEFVGIPVE--------------------------   71 (152)
T ss_pred             ceEEEEEccCcEEcHhhHHHHHHHHHh-heEEEecCCcchHHHHHHHHcCCcee--------------------------
Confidence            567788888889999999999999999 99999999999999999999998520                          


Q ss_pred             cchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEE
Q psy78           415 VSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVA  494 (523)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~  494 (523)
                                                                            .+++...|+.|..+++.|++..+.++
T Consensus        72 ------------------------------------------------------rv~a~a~~e~K~~ii~eLkk~~~k~v   97 (152)
T COG4087          72 ------------------------------------------------------RVFAGADPEMKAKIIRELKKRYEKVV   97 (152)
T ss_pred             ------------------------------------------------------eeecccCHHHHHHHHHHhcCCCcEEE
Confidence                                                                  47888899999999999999999999


Q ss_pred             EEcCChhhHHHHHhCCccEEe
Q psy78           495 MCGDGANDCGALRAAHAGISL  515 (523)
Q Consensus       495 a~GDG~ND~~MLk~A~vGIAM  515 (523)
                      |+|||.||..||+.||+||..
T Consensus        98 mVGnGaND~laLr~ADlGI~t  118 (152)
T COG4087          98 MVGNGANDILALREADLGICT  118 (152)
T ss_pred             EecCCcchHHHhhhcccceEE
Confidence            999999999999999999854

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=99.43  E-value=1.6e-13  Score=133.15  Aligned_cols=178  Identities=15%  Similarity=0.157  Sum_probs=103.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC--ceEEE-----ecCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP--KVYFT-----VSGVS  416 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~--~~~~~-----~~~~~  416 (523)
                      ..+..|++.+++++++++|+.++++|||+..++..+.+++++..+. .+++.||+.+......  ...+.     .....
T Consensus        19 ~~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~~p~-~~I~~NGa~I~~~~~~~~~~~~~~~~~~~~~~~   97 (249)
T TIGR01485        19 DNQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLLTPD-IWVTSVGSEIYYGGAEVPDQHWAEYLSEKWQRD   97 (249)
T ss_pred             ChHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCCCCC-EEEEcCCceEEeCCCCcCCHHHHHHHhcccCHH
Confidence            4557899999999999999999999999999999999999986543 6788888876542210  00000     00000


Q ss_pred             hhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhh------hcccEEEEcCChH--hHHHHHHHHHH
Q psy78           417 AIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRI------IVKGAIFARMSSD--QKQQLVLELQQ  488 (523)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~------~~~~~v~~~~~p~--~K~~~i~~L~~  488 (523)
                      .+.....................+..+....+......+...+.+...      ......+.++.|.  +|+.+++.+++
T Consensus        98 ~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ldi~~~~~~K~~al~~l~~  177 (249)
T TIGR01485        98 IVVAITDKFEELKPQPDLEQRPHKVSFFLDPEAAPEVIKQLTEMLKETGLDVKLIYSSGKDLDILPQGSGKGQALQYLLQ  177 (249)
T ss_pred             HHHHHHhcCcccccCCccccCCeeEEEEechhhhhHHHHHHHHHHHhcCCCEEEEEECCceEEEEeCCCChHHHHHHHHH
Confidence            000000000000000000011122222322222111111111111110      0111123355553  89999999988


Q ss_pred             C----CCEEEEEcCChhhHHHHHh-CCccEEecccCCCC
Q psy78           489 L----GYYVAMCGDGANDCGALRA-AHAGISLSEAESPI  522 (523)
Q Consensus       489 ~----~~~V~a~GDG~ND~~MLk~-A~vGIAMgna~~~v  522 (523)
                      +    .+++++|||+.||++|++. ++.||||+||.+++
T Consensus       178 ~~~i~~~~~i~~GD~~ND~~ml~~~~~~~va~~na~~~~  216 (249)
T TIGR01485       178 KLAMEPSQTLVCGDSGNDIELFEIGSVRGVIVSNAQEEL  216 (249)
T ss_pred             HcCCCccCEEEEECChhHHHHHHccCCcEEEECCCHHHH
Confidence            5    4789999999999999998 67999999998764

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>PTZ00174 phosphomannomutase; Provisional

Probab=99.41  E-value=3.5e-13  Score=130.38  Aligned_cols=175  Identities=13%  Similarity=0.104  Sum_probs=96.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec----Ccchhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS----GVSAIQT  420 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~----~~~~~~~  420 (523)
                      .++.+.++++|++++++|++++++|||++..+....+.... ....++++.||+.+.. ....+.....    +......
T Consensus        21 ~~is~~~~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~~~~~-~~~~~~I~~NGa~I~~-~~~~i~~~~i~~~l~~~~~~~   98 (247)
T PTZ00174         21 NPITQEMKDTLAKLKSKGFKIGVVGGSDYPKIKEQLGEDVL-EDFDYVFSENGLVAYK-DGELFHSQSILKFLGEEKLKK   98 (247)
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHhhhhh-cccCeEEeCCceEEEE-CCeEEEEEcchhcCCHHHHHH
Confidence            35999999999999999999999999999977554432221 1124678999988764 2233322221    1111111


Q ss_pred             hhhh-------cccCchhhhhccCCCceEEEE------------------e--cccHHHHHhhCcchHhhh--hcc--cE
Q psy78           421 KAKK-------LNYSKTEEELGLSSGAYKFAV------------------T--GKSWELIRDQMPELIPRI--IVK--GA  469 (523)
Q Consensus       421 ~~~~-------~~~~~~~~~~~~~~~~~~l~i------------------~--~~~~~~l~~~~~~~~~~~--~~~--~~  469 (523)
                      ....       ....... .............                  .  .+..+.+.+.+...+...  ...  ..
T Consensus        99 i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~~~~  177 (247)
T PTZ00174         99 FINFCLRYIADLDIPVKR-GTFIEYRNGMINISPIGRNCSQEERDEFEKYDKEHHIREKFIQDLKKEFSDLGLKFSIGGQ  177 (247)
T ss_pred             HHHHHHHHHHhcCCccce-eeeEEcCCceEEeccccccCCHHHHHHHHhcCCcchHHHHHHHHHHHhcCCCCeEEEecCc
Confidence            1100       0000000 0000000000000                  0  011111111111111110  011  12


Q ss_pred             EEEcCChH--hHHHHHHHHHHCCCEEEEEcC----ChhhHHHHHhC-CccEEecccCCCC
Q psy78           470 IFARMSSD--QKQQLVLELQQLGYYVAMCGD----GANDCGALRAA-HAGISLSEAESPI  522 (523)
Q Consensus       470 v~~~~~p~--~K~~~i~~L~~~~~~V~a~GD----G~ND~~MLk~A-~vGIAMgna~~~v  522 (523)
                      .+.++.|.  +|+.+++.|+++.++|+||||    |.||++||+.| -.|++.+||++.|
T Consensus       178 ~~leI~~~gvsKg~al~~L~~~~~eviafGD~~~~~~NDieMl~~~~~~g~~v~n~~~~~  237 (247)
T PTZ00174        178 ISFDVFPKGWDKTYCLRHLENDFKEIHFFGDKTFEGGNDYEIYNDPRTIGHSVKNPEDTI  237 (247)
T ss_pred             eEEEeeeCCCcHHHHHHHHHhhhhhEEEEcccCCCCCCcHhhhhcCCCceEEeCCHHHHH
Confidence            35577775  899999999999999999999    99999999976 4666667988753

>PLN02382 probable sucrose-phosphatase

Probab=99.41  E-value=3.9e-13  Score=138.77  Aligned_cols=176  Identities=17%  Similarity=0.160  Sum_probs=102.4

Q ss_pred             CCCcchHHHH-HHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC--ceEEE-----ecCcch
Q psy78           346 RLKPQTEGVI-KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP--KVYFT-----VSGVSA  417 (523)
Q Consensus       346 ~lr~~t~~aI-~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~--~~~~~-----~~~~~~  417 (523)
                      .+.+...+++ ++++++|+.++++|||++..+..+.+++++..++ .+++.||..+......  ...+.     ......
T Consensus        28 ~~s~~~~~~l~~~~~~~gi~fv~aTGR~~~~~~~l~~~~~l~~p~-~~I~~nGt~I~~~~~~~~d~~w~~~l~~~w~~~~  106 (413)
T PLN02382         28 NLSLLRFNALWEAEYRHDSLLVFSTGRSPTLYKELRKEKPLLTPD-ITIMSVGTEIAYGESMVPDHGWVEYLNKKWDREI  106 (413)
T ss_pred             chhHHHHHHHHHHhhcCCeeEEEEcCCCHHHHHHHHHhCCCCCCC-EEEEcCCcEEEeCCCCccChhHHHHHhccCChhh
Confidence            4555666777 8899999999999999999999999999987654 5677788765321110  00000     001000


Q ss_pred             hhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhh------hhcccEEEEcCChH--hHHHHHHHHHHC
Q psy78           418 IQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPR------IIVKGAIFARMSSD--QKQQLVLELQQL  489 (523)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~------~~~~~~v~~~~~p~--~K~~~i~~L~~~  489 (523)
                      +......+..............+..+....+....+.+.+.+.+..      .......+.++.|.  +|+.+++.|+++
T Consensus       107 v~~~~~~~~~l~~q~~~~~~~~Ki~~~~~~~~~~~~~~~l~~~~~~~g~~~~i~~s~~~~ldI~p~g~sKg~Al~~L~~~  186 (413)
T PLN02382        107 VVEETSKFPELKLQPETEQRPHKVSFYVDKKKAQEVIKELSERLEKRGLDVKIIYSGGIDLDVLPQGAGKGQALAYLLKK  186 (413)
T ss_pred             HHHHHhcCCCcccCCcccCCCeEEEEEechHHhHHHHHHHHHHHHhcCCcEEEEEECCcEEEEEeCCCCHHHHHHHHHHH
Confidence            0000000100000000001112223333333333333222222211      11111235567775  799999999886


Q ss_pred             -------CCEEEEEcCChhhHHHHHhCC-ccEEecccCCCC
Q psy78           490 -------GYYVAMCGDGANDCGALRAAH-AGISLSEAESPI  522 (523)
Q Consensus       490 -------~~~V~a~GDG~ND~~MLk~A~-vGIAMgna~~~v  522 (523)
                             .+++++|||+.||++||+.|| .|||||||.+++
T Consensus       187 ~~~~gi~~~~~iafGDs~NDleMl~~ag~~gvam~NA~~el  227 (413)
T PLN02382        187 LKAEGKAPVNTLVCGDSGNDAELFSVPDVYGVMVSNAQEEL  227 (413)
T ss_pred             hhhcCCChhcEEEEeCCHHHHHHHhcCCCCEEEEcCCcHHH
Confidence                   358999999999999999999 799999998764

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=99.37  E-value=2.1e-12  Score=136.95  Aligned_cols=171  Identities=14%  Similarity=0.139  Sum_probs=99.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCC-------------CceEEE-
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKEC-------------PKVYFT-  411 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~-------------~~~~~~-  411 (523)
                      .+.+.++++|++|+++|+.++++|||+...+..+++++++.   .++++.||+.+.....             ...... 
T Consensus       433 ~i~~~t~eAL~~L~ekGI~~VIATGRs~~~i~~l~~~Lgl~---~~~I~eNGA~I~~~~~~~~~~~~~~~~~~~~iI~~~  509 (694)
T PRK14502        433 YSYSTALDALRLLKDKELPLVFCSAKTMGEQDLYRNELGIK---DPFITENGGAIFIPKDYFRLPFAYDRVAGNYLVIEL  509 (694)
T ss_pred             ccCHHHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCC---CeEEEcCCCEEEECCCcccccccccccCCCeEEEEc
Confidence            36678999999999999999999999999999999999974   4688888876654322             112221 


Q ss_pred             ecCcchhhhhhh---h-cc-------------c---Cch--------------hhhhcc-CCCceEEEEec--ccHHHHH
Q psy78           412 VSGVSAIQTKAK---K-LN-------------Y---SKT--------------EEELGL-SSGAYKFAVTG--KSWELIR  454 (523)
Q Consensus       412 ~~~~~~~~~~~~---~-~~-------------~---~~~--------------~~~~~~-~~~~~~l~i~~--~~~~~l~  454 (523)
                      ..+...+.....   . ..             .   ...              ...... ......+...+  +.++.+.
T Consensus       510 ~l~~e~i~~IL~~lke~l~~~i~ihv~~~~~~i~~~~d~~~~ei~~~TgL~~~~a~~a~~Re~seKIl~~gd~e~Leel~  589 (694)
T PRK14502        510 GMAYKDIRHILKKALAEACTEIENSEKAGNIFITSFGDMSVEDVSRLTDLNLKQAELAKQREYSETVHIEGDKRSTNIVL  589 (694)
T ss_pred             CCCHHHHHHHHHHHHHhhcceeeeeeccCcEEEecCCcccHHHHHHhhCCCHHHHHHHhhccCceeEEEcCCHHHHHHHH
Confidence            111111110000   0 00             0   000              000000 01111222222  2233332


Q ss_pred             hhCcchHhhhhcccEEEEcCC-hHhHHHHHHHHHHC----CCEEEEE--cCChhhHHHHHhCCccEEecccCC
Q psy78           455 DQMPELIPRIIVKGAIFARMS-SDQKQQLVLELQQL----GYYVAMC--GDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       455 ~~~~~~~~~~~~~~~v~~~~~-p~~K~~~i~~L~~~----~~~V~a~--GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      +.....-..... ...+.++. ..+|+.+++.|++.    .+++++|  |||.||++||+.||+||||++-..
T Consensus       590 ~~L~~~~l~v~~-g~rfleI~~gvdKG~AL~~L~e~~gI~~~eViafalGDs~NDisMLe~Ag~gVAM~~~~~  661 (694)
T PRK14502        590 NHIQQSGLEYSF-GGRFYEVTGGNDKGKAIKILNELFRLNFGNIHTFGLGDSENDYSMLETVDSPILVQRPGN  661 (694)
T ss_pred             HHHHHcCcEEEE-CCEEEEeCCCCCHHHHHHHHHHHhCCCccceEEEEcCCcHhhHHHHHhCCceEEEcCCCC
Confidence            222111001111 22344444 34899999999986    3567888  999999999999999999987654

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=99.34  E-value=8.9e-13  Score=126.84  Aligned_cols=171  Identities=12%  Similarity=0.122  Sum_probs=95.7

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC--ceEEEec-----Ccchhh
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP--KVYFTVS-----GVSAIQ  419 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~--~~~~~~~-----~~~~~~  419 (523)
                      +.+-+ ++++ ++++|++++++|||+...+..+.+++++..+ +.++..||+.+......  ...+...     ......
T Consensus        17 ~~~~~-~~~~-~~~~gi~~viaTGR~~~~v~~~~~~l~l~~~-~~~I~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (236)
T TIGR02471        17 LASFV-ELLR-GSGDAVGFGIATGRSVESAKSRYAKLNLPSP-DVLIARVGTEIYYGPELQPDRFWQKHIDHDWRRQAVV   93 (236)
T ss_pred             HHHHH-HHHH-hcCCCceEEEEeCCCHHHHHHHHHhCCCCCC-CEEEECCCceEEeCCCCCCChhHHHHHhcCCCHHHHH
Confidence            44444 6666 7999999999999999999999999998643 37899999875322110  0000000     000000


Q ss_pred             hhhhhcccCchhhhhccCC--CceEEEEeccc---HHHHHhhCcchHh--hhhcccEEEEcCChH--hHHHHHHHHHHC-
Q psy78           420 TKAKKLNYSKTEEELGLSS--GAYKFAVTGKS---WELIRDQMPELIP--RIIVKGAIFARMSSD--QKQQLVLELQQL-  489 (523)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~--~~~~l~i~~~~---~~~l~~~~~~~~~--~~~~~~~v~~~~~p~--~K~~~i~~L~~~-  489 (523)
                      .....+.  ....+.....  .+..+...++.   ...+.+.......  ........+.++.|.  +|+.+++.+.++ 
T Consensus        94 ~~~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ei~~~~~~K~~al~~l~~~~  171 (236)
T TIGR02471        94 EALADIP--GLTLQDDQEQGPFKISYLLDPEGEPILPQIRQRLRQQSQAAKVILSCGWFLDVLPLRASKGLALRYLSYRW  171 (236)
T ss_pred             HHHhcCC--CcEeCChhcCCCeeEEEEECcccchHHHHHHHHHHhccCCEEEEEECCceEEEeeCCCChHHHHHHHHHHh
Confidence            0000000  0000001111  12233333321   1222211111000  000011112355555  899999999886 


Q ss_pred             ---CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           490 ---GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       490 ---~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                         .+++++|||+.||++||+.||+||||+||.+++
T Consensus       172 g~~~~~~i~~GD~~nD~~ml~~~~~~iav~na~~~~  207 (236)
T TIGR02471       172 GLPLEQILVAGDSGNDEEMLRGLTLGVVVGNHDPEL  207 (236)
T ss_pred             CCCHHHEEEEcCCccHHHHHcCCCcEEEEcCCcHHH
Confidence               347999999999999999999999999998764

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=99.30  E-value=6.8e-12  Score=122.48  Aligned_cols=168  Identities=11%  Similarity=0.109  Sum_probs=98.4

Q ss_pred             CCCcchHHHHHHHHh-CCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcch---hhhh
Q psy78           346 RLKPQTEGVIKELKD-ARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA---IQTK  421 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~-~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~---~~~~  421 (523)
                      .+.++++++|++|++ .|+.++++|||+...+..+.+.+++     .++..||....+.... ........+.   +...
T Consensus        36 ~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~~~~~-----~~i~~nGa~i~~~~~~-~~~~~l~~~~~~~i~~~  109 (266)
T PRK10187         36 VVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRF-----PLAGVHGAERRDINGK-THIVHLPDAIARDISVQ  109 (266)
T ss_pred             cCCHHHHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcCcccc-----eEEEeCCCeeecCCCC-eeeccCChhHHHHHHHH
Confidence            578999999999998 7999999999999999888776653     4778888876543322 1111111111   1111


Q ss_pred             hhhcccCchhhhhccCCCceEEEEec----cc---HHHHHhhCcchHh-hhhcccEEEEcCChH--hHHHHHHHHHHC--
Q psy78           422 AKKLNYSKTEEELGLSSGAYKFAVTG----KS---WELIRDQMPELIP-RIIVKGAIFARMSSD--QKQQLVLELQQL--  489 (523)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~l~i~~----~~---~~~l~~~~~~~~~-~~~~~~~v~~~~~p~--~K~~~i~~L~~~--  489 (523)
                      ..........  ...+.....+....    +.   ...+.+...+.+. ..+.....+.++.|.  +|+.+++.+.++  
T Consensus       110 l~~~~~~~pg--~~ve~k~~~~~~h~r~~~~~~~~~~~l~~~i~~~~~~~~~~~g~~~lEi~p~g~~Kg~al~~ll~~~~  187 (266)
T PRK10187        110 LHTALAQLPG--AELEAKGMAFALHYRQAPQHEDALLALAQRITQIWPQLALQPGKCVVEIKPRGTNKGEAIAAFMQEAP  187 (266)
T ss_pred             HHHHhccCCC--cEEEeCCcEEEEECCCCCccHHHHHHHHHHHHhhCCceEEeCCCEEEEeeCCCCCHHHHHHHHHHhcC
Confidence            1110000000  00011111111111    11   1111111111111 011122345566665  899999999886  


Q ss_pred             --CCEEEEEcCChhhHHHHHhC----CccEEecccCCC
Q psy78           490 --GYYVAMCGDGANDCGALRAA----HAGISLSEAESP  521 (523)
Q Consensus       490 --~~~V~a~GDG~ND~~MLk~A----~vGIAMgna~~~  521 (523)
                        .+.+++|||+.||.+||+.+    |+||+|||+.+.
T Consensus       188 ~~~~~v~~~GD~~nD~~mf~~~~~~~g~~vavg~a~~~  225 (266)
T PRK10187        188 FAGRTPVFVGDDLTDEAGFAVVNRLGGISVKVGTGATQ  225 (266)
T ss_pred             CCCCeEEEEcCCccHHHHHHHHHhcCCeEEEECCCCCc
Confidence              46899999999999999999    999999999764

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=99.13  E-value=2.8e-10  Score=106.79  Aligned_cols=108  Identities=27%  Similarity=0.278  Sum_probs=82.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .+++|++.+.++.++++|++++++||-+..-+.++++.+|++..-...+.....                          
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d~~~an~l~~~dG--------------------------  129 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGIDYVVANELEIDDG--------------------------  129 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCchheeeEEEEeCC--------------------------
Confidence            789999999999999999999999999999999999999997432221111100                          


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGA  500 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~  500 (523)
                                         ..+|.                    ...-.+..+.|...++.+.+.    .+.++|+|||.
T Consensus       130 -------------------~ltG~--------------------v~g~~~~~~~K~~~l~~~~~~~g~~~~~~~a~gDs~  170 (212)
T COG0560         130 -------------------KLTGR--------------------VVGPICDGEGKAKALRELAAELGIPLEETVAYGDSA  170 (212)
T ss_pred             -------------------EEece--------------------eeeeecCcchHHHHHHHHHHHcCCCHHHeEEEcCch
Confidence                               01111                    122234457899999777764    35799999999


Q ss_pred             hhHHHHHhCCccEEecc
Q psy78           501 NDCGALRAAHAGISLSE  517 (523)
Q Consensus       501 ND~~MLk~A~vGIAMgn  517 (523)
                      ||+|||+.||.+||..-
T Consensus       171 nDlpml~~ag~~ia~n~  187 (212)
T COG0560         171 NDLPMLEAAGLPIAVNP  187 (212)
T ss_pred             hhHHHHHhCCCCeEeCc
Confidence            99999999999999864

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=99.12  E-value=2.1e-10  Score=107.69  Aligned_cols=163  Identities=16%  Similarity=0.162  Sum_probs=91.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cC-cchhhhhhh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SG-VSAIQTKAK  423 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~-~~~~~~~~~  423 (523)
                      ++.+++.++|++|+++|++++++|||+...+..+.++++     ..++..||+.......  ..+.. .+ ...+.....
T Consensus        17 ~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~-----~~~i~~nGa~i~~~~~--~~~~~~~~~~~~~~~~~~   89 (204)
T TIGR01484        17 ELSPETIEALERLREAGVKVVLVTGRSLAEIKELLKQLP-----LPLIAENGALIFYPGE--ILYIEPSDVFEEILGIKE   89 (204)
T ss_pred             cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCC-----CCEEECCCcEEEECCE--EEEEcccccHHHHHHhhh
Confidence            588999999999999999999999999999999988742     4588888877653221  12221 00 011110000


Q ss_pred             hcccC----c---hhhhhccCCCceEEEEecc----c-HHHHHhhCcchH---h--hhhcccEEEEcCChH--hHHHHHH
Q psy78           424 KLNYS----K---TEEELGLSSGAYKFAVTGK----S-WELIRDQMPELI---P--RIIVKGAIFARMSSD--QKQQLVL  484 (523)
Q Consensus       424 ~~~~~----~---~~~~~~~~~~~~~l~i~~~----~-~~~l~~~~~~~~---~--~~~~~~~v~~~~~p~--~K~~~i~  484 (523)
                      .+...    .   .............+...+.    . ...+.+......   .  .+......+.++.|.  +|+.+++
T Consensus        90 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ev~p~~~~K~~~~~  169 (204)
T TIGR01484        90 EIGAELKSLSEHYVGTFIEDKAIAVAIHYVGAELGQELDSKMRERLEKIGRNDLELEAIYVGKTDLEVLPAGVDKGSALQ  169 (204)
T ss_pred             hcCceeeeeccccccceeecccceeeEEEeccchhhHHHHHHHHHHHhhccccCcEEEEEecCCEEEEecCCCChHHHHH
Confidence            00000    0   0000000011111111111    0 111111100000   0  011012234455664  8999999


Q ss_pred             HHHHC----CCEEEEEcCChhhHHHHHhCCccEEe
Q psy78           485 ELQQL----GYYVAMCGDGANDCGALRAAHAGISL  515 (523)
Q Consensus       485 ~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAM  515 (523)
                      .+.++    .+.++++||+.||.+|++.+|+||||
T Consensus       170 ~~~~~~~~~~~~~~~~GD~~nD~~~~~~~~~~vam  204 (204)
T TIGR01484       170 ALLKELNGKRDEILAFGDSGNDEEMFEVAGLAVAV  204 (204)
T ss_pred             HHHHHhCCCHHHEEEEcCCHHHHHHHHHcCCceEC
Confidence            99876    36799999999999999999999998

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=99.12  E-value=1.7e-10  Score=115.07  Aligned_cols=111  Identities=23%  Similarity=0.229  Sum_probs=81.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      -++.|++++.|+.|++.|+++.++||.....+..+.+++|++.    ++. |.....+                      
T Consensus       180 l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~----~~a-n~lei~d----------------------  232 (322)
T PRK11133        180 LPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA----AVA-NELEIMD----------------------  232 (322)
T ss_pred             CCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe----EEE-eEEEEEC----------------------
Confidence            4689999999999999999999999999888889999999852    111 1000000                      


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEE-EcCChHhHHHHHHHHHHC----CCEEEEEcCC
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIF-ARMSSDQKQQLVLELQQL----GYYVAMCGDG  499 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~p~~K~~~i~~L~~~----~~~V~a~GDG  499 (523)
                                    .    .+++                     .+. .-+..+.|...++.++++    .++++|||||
T Consensus       233 --------------g----~ltg---------------------~v~g~iv~~k~K~~~L~~la~~lgi~~~qtIaVGDg  273 (322)
T PRK11133        233 --------------G----KLTG---------------------NVLGDIVDAQYKADTLTRLAQEYEIPLAQTVAIGDG  273 (322)
T ss_pred             --------------C----EEEe---------------------EecCccCCcccHHHHHHHHHHHcCCChhhEEEEECC
Confidence                          0    0000                     000 012346799999988875    4789999999


Q ss_pred             hhhHHHHHhCCccEEecccCCCC
Q psy78           500 ANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       500 ~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      .||++|++.||+|||| ||.+.|
T Consensus       274 ~NDl~m~~~AGlgiA~-nAkp~V  295 (322)
T PRK11133        274 ANDLPMIKAAGLGIAY-HAKPKV  295 (322)
T ss_pred             HHHHHHHHHCCCeEEe-CCCHHH
Confidence            9999999999999999 887654

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=99.07  E-value=8.8e-10  Score=106.01  Aligned_cols=56  Identities=5%  Similarity=-0.008  Sum_probs=49.3

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGL  402 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~  402 (523)
                      ++...+.++++|++|+++|+.++++|||+...+..+.+++++.   .++|+.||+.+..
T Consensus        16 ~~~~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~~Lgl~---~p~I~eNGA~I~~   71 (302)
T PRK12702         16 EFNSYGAARQALAALERRSIPLVLYSLRTRAQLEHLCRQLRLE---HPFICEDGSAIYV   71 (302)
T ss_pred             CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCC---CeEEEeCCcEEEE
Confidence            3457788999999999999999999999999999999999985   3789999987653

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=99.02  E-value=2e-09  Score=100.62  Aligned_cols=103  Identities=22%  Similarity=0.239  Sum_probs=79.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCe-EEEee-cCCCCCCCCCceEEEecCcchhhhhhh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGET-VVDVS-AVPGGLKECPKVYFTVSGVSAIQTKAK  423 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~-~i~~n-g~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (523)
                      ++.|++++.|+.+|+.| +++++||-....+.++++++|++..-+. ....+ |                          
T Consensus        68 ~l~pga~ell~~lk~~~-~~~IVS~~~~~~~~~il~~lgi~~~~an~l~~~~~g--------------------------  120 (203)
T TIGR02137        68 KPLEGAVEFVDWLRERF-QVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSD--------------------------  120 (203)
T ss_pred             CCCccHHHHHHHHHhCC-eEEEEeCChHHHHHHHHHHcCCchhhceeeEEecCC--------------------------
Confidence            68999999999999985 9999999999999999999999631100 00000 0                          


Q ss_pred             hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhH
Q psy78           424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDC  503 (523)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~  503 (523)
                                          .++|.                     .  ...+..|...++.+++.+..++++|||.||+
T Consensus       121 --------------------~~tG~---------------------~--~~~~~~K~~~l~~l~~~~~~~v~vGDs~nDl  157 (203)
T TIGR02137       121 --------------------RVVGY---------------------Q--LRQKDPKRQSVIAFKSLYYRVIAAGDSYNDT  157 (203)
T ss_pred             --------------------eeECe---------------------e--ecCcchHHHHHHHHHhhCCCEEEEeCCHHHH
Confidence                                00010                     0  1245689999999988787899999999999


Q ss_pred             HHHHhCCccEEeccc
Q psy78           504 GALRAAHAGISLSEA  518 (523)
Q Consensus       504 ~MLk~A~vGIAMgna  518 (523)
                      +|++.||+||||.-.
T Consensus       158 ~ml~~Ag~~ia~~ak  172 (203)
T TIGR02137       158 TMLSEAHAGILFHAP  172 (203)
T ss_pred             HHHHhCCCCEEecCC
Confidence            999999999999753

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=98.99  E-value=8.8e-10  Score=99.42  Aligned_cols=89  Identities=16%  Similarity=0.179  Sum_probs=68.2

Q ss_pred             HHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchh
Q psy78           352 EGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTE  431 (523)
Q Consensus       352 ~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (523)
                      -.+|+.|+++|+++.|+|+.+...+...++.+|+..                                            
T Consensus        40 ~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~lgi~~--------------------------------------------   75 (169)
T TIGR02726        40 GMGVIVLQLCGIDVAIITSKKSGAVRHRAEELKIKR--------------------------------------------   75 (169)
T ss_pred             HHHHHHHHHCCCEEEEEECCCcHHHHHHHHHCCCcE--------------------------------------------
Confidence            468999999999999999999999999999999841                                            


Q ss_pred             hhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCC--hHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhC
Q psy78           432 EELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMS--SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       432 ~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                            ++....  |+.-..+++.+.-..+++++|||+.||++|++.|
T Consensus        76 --------------------------------------~f~~~kpkp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~a  117 (169)
T TIGR02726        76 --------------------------------------FHEGIKKKTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRV  117 (169)
T ss_pred             --------------------------------------EEecCCCCHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHC
Confidence                                                  111111  2222233333332357899999999999999999


Q ss_pred             CccEEecccCCCC
Q psy78           510 HAGISLSEAESPI  522 (523)
Q Consensus       510 ~vGIAMgna~~~v  522 (523)
                      |+++||+||.+++
T Consensus       118 g~~~am~nA~~~l  130 (169)
T TIGR02726       118 GLAVAVGDAVADV  130 (169)
T ss_pred             CCeEECcCchHHH
Confidence            9999999997653

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=98.94  E-value=2.3e-09  Score=95.83  Aligned_cols=84  Identities=18%  Similarity=0.229  Sum_probs=67.2

Q ss_pred             HHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhh
Q psy78           354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE  433 (523)
Q Consensus       354 aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (523)
                      +|++|+++|+++.|+||++...+..+++.+|+..                                              
T Consensus        36 ~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~~gi~~----------------------------------------------   69 (154)
T TIGR01670        36 GIRCALKSGIEVAIITGRKAKLVEDRCKTLGITH----------------------------------------------   69 (154)
T ss_pred             HHHHHHHCCCEEEEEECCCCHHHHHHHHHcCCCE----------------------------------------------
Confidence            8999999999999999999999999999999851                                              


Q ss_pred             hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC
Q psy78           434 LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       434 ~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                          .+..  ...|...++.+.++    .+.++++||+.||++|++.|
T Consensus        70 ------------------------------------~~~~--~~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~a  111 (154)
T TIGR01670        70 ------------------------------------LYQG--QSNKLIAFSDILEKLALAPENVAYIGDDLIDWPVMEKV  111 (154)
T ss_pred             ------------------------------------EEec--ccchHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHC
Confidence                                                0110  12345555555442    56899999999999999999


Q ss_pred             CccEEecccCCC
Q psy78           510 HAGISLSEAESP  521 (523)
Q Consensus       510 ~vGIAMgna~~~  521 (523)
                      |++++|.++.+.
T Consensus       112 g~~~~v~~~~~~  123 (154)
T TIGR01670       112 GLSVAVADAHPL  123 (154)
T ss_pred             CCeEecCCcCHH
Confidence            999999998653

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=98.87  E-value=1.1e-09  Score=105.81  Aligned_cols=163  Identities=12%  Similarity=0.118  Sum_probs=89.9

Q ss_pred             HHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCce--EEE-----ecCcchhhhhhhhcccCch
Q psy78           358 LKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV--YFT-----VSGVSAIQTKAKKLNYSKT  430 (523)
Q Consensus       358 Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~  430 (523)
                      ..+.++.++++|||+...+..+.++.++.. .+.+++.+|..+........  .|.     ..+...+.+....+..-..
T Consensus        31 ~~~~~~~~v~~TGRs~~~~~~~~~~~~l~~-Pd~~I~svGt~I~~~~~~~~d~~w~~~i~~~w~~~~v~~~l~~~~~l~~  109 (247)
T PF05116_consen   31 QARPEILFVYVTGRSLESVLRLLREYNLPQ-PDYIITSVGTEIYYGENWQPDEEWQAHIDERWDRERVEEILAELPGLRP  109 (247)
T ss_dssp             HHCCGEEEEEE-SS-HHHHHHHHHHCT-EE--SEEEETTTTEEEESSTTEE-HHHHHHHHTT--HHHHHHHHHCHCCEEE
T ss_pred             hhCCCceEEEECCCCHHHHHHHHHhCCCCC-CCEEEecCCeEEEEcCCCcChHHHHHHHHhcCChHHHHHHHHHhhCccc
Confidence            447789999999999999999999999854 46788888876544110000  000     0011111111111100001


Q ss_pred             hhhhccCCCceEEEEecccHHHHHhhCcchHhh------hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcC
Q psy78           431 EEELGLSSGAYKFAVTGKSWELIRDQMPELIPR------IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGD  498 (523)
Q Consensus       431 ~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~------~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GD  498 (523)
                      .........+..+.+..+......+.+...+..      +..+.....++.|.  +|+.+++.|+++    .+.|+++||
T Consensus       110 q~~~~q~~~k~sy~~~~~~~~~~~~~i~~~l~~~~l~~~~i~s~~~~ldilP~~a~K~~Al~~L~~~~~~~~~~vl~aGD  189 (247)
T PF05116_consen  110 QPESEQRPFKISYYVDPDDSADILEEIRARLRQRGLRVNVIYSNGRDLDILPKGASKGAALRYLMERWGIPPEQVLVAGD  189 (247)
T ss_dssp             GGCCCGCCTCECEEEETTSHCHHHHHHHHHHHCCTCEEEEEECTCCEEEEEETT-SHHHHHHHHHHHHT--GGGEEEEES
T ss_pred             CCccccCCeeEEEEEecccchhHHHHHHHHHHHcCCCeeEEEccceeEEEccCCCCHHHHHHHHHHHhCCCHHHEEEEeC
Confidence            111112233455566654443322221111111      11111224455564  899999999997    467999999


Q ss_pred             ChhhHHHHHhCCccEEecccCCC
Q psy78           499 GANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       499 G~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +.||.+||..++.||.+|||.++
T Consensus       190 SgND~~mL~~~~~~vvV~Na~~e  212 (247)
T PF05116_consen  190 SGNDLEMLEGGDHGVVVGNAQPE  212 (247)
T ss_dssp             SGGGHHHHCCSSEEEE-TTS-HH
T ss_pred             CCCcHHHHcCcCCEEEEcCCCHH
Confidence            99999999999999999999875

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=98.80  E-value=1.1e-08  Score=94.32  Aligned_cols=84  Identities=19%  Similarity=0.229  Sum_probs=67.7

Q ss_pred             HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78           353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE  432 (523)
Q Consensus       353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (523)
                      .+++.|+++|+++.++||++...+..+++++|+..                                             
T Consensus        55 ~~i~~L~~~Gi~v~I~T~~~~~~v~~~l~~lgl~~---------------------------------------------   89 (183)
T PRK09484         55 YGIRCLLTSGIEVAIITGRKSKLVEDRMTTLGITH---------------------------------------------   89 (183)
T ss_pred             HHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCce---------------------------------------------
Confidence            79999999999999999999999999999999841                                             


Q ss_pred             hhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHh
Q psy78           433 ELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRA  508 (523)
Q Consensus       433 ~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~  508 (523)
                                                           ++.  ...+|...++.+.+.    .++++++||+.||++|++.
T Consensus        90 -------------------------------------~f~--g~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~  130 (183)
T PRK09484         90 -------------------------------------LYQ--GQSNKLIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEK  130 (183)
T ss_pred             -------------------------------------eec--CCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHH
Confidence                                                 111  113455666655543    4689999999999999999


Q ss_pred             CCccEEecccCC
Q psy78           509 AHAGISLSEAES  520 (523)
Q Consensus       509 A~vGIAMgna~~  520 (523)
                      ||++++++++.+
T Consensus       131 aG~~~~v~~~~~  142 (183)
T PRK09484        131 VGLSVAVADAHP  142 (183)
T ss_pred             CCCeEecCChhH
Confidence            999999987643

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=98.71  E-value=6.4e-08  Score=90.44  Aligned_cols=108  Identities=20%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.+.|+.|+++|++++++||.....+..+++.+|+...-+..+......        .                 
T Consensus        80 ~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~~~~~~~~~~~~~g--------~-----------------  134 (201)
T TIGR01491        80 SLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPDYVYSNELVFDEKG--------F-----------------  134 (201)
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCCeEEEEEEEEcCCC--------e-----------------
Confidence            689999999999999999999999999999999999999752100111000000        0                 


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGAN  501 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~N  501 (523)
                                         ..+                     ..+....+..|..+++.+.+.    .++++++||+.|
T Consensus       135 -------------------~~p---------------------~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~  174 (201)
T TIGR01491       135 -------------------IQP---------------------DGIVRVTFDNKGEAVERLKRELNPSLTETVAVGDSKN  174 (201)
T ss_pred             -------------------Eec---------------------ceeeEEccccHHHHHHHHHHHhCCCHHHEEEEcCCHh
Confidence                               000                     011123355677777776553    467999999999


Q ss_pred             hHHHHHhCCccEEeccc
Q psy78           502 DCGALRAAHAGISLSEA  518 (523)
Q Consensus       502 D~~MLk~A~vGIAMgna  518 (523)
                      |++|++.||+++|++..
T Consensus       175 D~~~a~~ag~~~a~~~~  191 (201)
T TIGR01491       175 DLPMFEVADISISLGDE  191 (201)
T ss_pred             HHHHHHhcCCeEEECCC
Confidence            99999999999999753

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=98.69  E-value=1.3e-07  Score=105.48  Aligned_cols=170  Identities=12%  Similarity=0.098  Sum_probs=92.0

Q ss_pred             CCCcchHHHHHHHHh-CCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           346 RLKPQTEGVIKELKD-ARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~-~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .+.+++.++|++|.+ .|+.|+++|||+..........+++     .++..||........ .+................
T Consensus       514 ~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~~~~l-----~liaenG~~i~~~~~-~w~~~~~~~~~w~~~v~~  587 (726)
T PRK14501        514 VPDKELRDLLRRLAADPNTDVAIISGRDRDTLERWFGDLPI-----HLVAEHGAWSRAPGG-EWQLLEPVATEWKDAVRP  587 (726)
T ss_pred             CCCHHHHHHHHHHHcCCCCeEEEEeCCCHHHHHHHhCCCCe-----EEEEeCCEEEeCCCC-ceEECCCcchhHHHHHHH
Confidence            478999999999999 5999999999999988776654432     477777765542211 111100000000000000


Q ss_pred             cccCchhh--hhccCCCceEEEEe--c--ccHHHH-HhhCcchHhhhhc-------ccEEEEcCChH--hHHHHHHHHHH
Q psy78           425 LNYSKTEE--ELGLSSGAYKFAVT--G--KSWELI-RDQMPELIPRIIV-------KGAIFARMSSD--QKQQLVLELQQ  488 (523)
Q Consensus       425 ~~~~~~~~--~~~~~~~~~~l~i~--~--~~~~~l-~~~~~~~~~~~~~-------~~~v~~~~~p~--~K~~~i~~L~~  488 (523)
                      +.......  ..........+...  .  .++... .+.....+.....       ......++.|.  +|+.+++.+.+
T Consensus       588 il~~~~~~~~gs~ie~k~~~l~~~~r~~d~~~~~~~a~~l~~~l~~~~~~~~~~v~~g~~~veV~p~~vnKG~al~~ll~  667 (726)
T PRK14501        588 ILEEFVDRTPGSFIEEKEASLAWHYRNADPELGEARANELILALSSLLSNAPLEVLRGNKVVEVRPAGVNKGRAVRRLLE  667 (726)
T ss_pred             HHHHHHhcCCCcEEEEcceEEEEEccCCCHHHHHHHHHHHHHHHHHHhcCCCeEEEECCeEEEEEECCCCHHHHHHHHHh
Confidence            00000000  00001111112111  1  111110 0001111111111       11234455564  89999999998


Q ss_pred             C--CCEEEEEcCChhhHHHHHhC---CccEEecccCCC
Q psy78           489 L--GYYVAMCGDGANDCGALRAA---HAGISLSEAESP  521 (523)
Q Consensus       489 ~--~~~V~a~GDG~ND~~MLk~A---~vGIAMgna~~~  521 (523)
                      .  .+.+++|||+.||.+||+.+   +++|+|||+.+.
T Consensus       668 ~~~~d~vl~~GD~~nDe~Mf~~~~~~~~~v~vG~~~s~  705 (726)
T PRK14501        668 AGPYDFVLAIGDDTTDEDMFRALPETAITVKVGPGESR  705 (726)
T ss_pred             cCCCCEEEEECCCCChHHHHHhcccCceEEEECCCCCc
Confidence            6  46899999999999999996   799999997653

>PLN02423 phosphomannomutase

Probab=98.69  E-value=7.4e-08  Score=92.97  Aligned_cols=47  Identities=19%  Similarity=0.181  Sum_probs=39.2

Q ss_pred             EEEcCChH--hHHHHHHHHHHCCCEEEEEcC----ChhhHHHHHh-CCccEEecc
Q psy78           470 IFARMSSD--QKQQLVLELQQLGYYVAMCGD----GANDCGALRA-AHAGISLSE  517 (523)
Q Consensus       470 v~~~~~p~--~K~~~i~~L~~~~~~V~a~GD----G~ND~~MLk~-A~vGIAMgn  517 (523)
                      .+.++.|.  +|+.+++.|+ ..++|+||||    |.||++||+. --.|+++.+
T Consensus       179 ~~iDi~~~gvnKg~al~~L~-~~~e~~aFGD~~~~~~ND~eMl~~~~~~~~~~~~  232 (245)
T PLN02423        179 ISFDVFPQGWDKTYCLQFLE-DFDEIHFFGDKTYEGGNDHEIFESERTIGHTVTS  232 (245)
T ss_pred             EEEEEeeCCCCHHHHHHHhc-CcCeEEEEeccCCCCCCcHHHHhCCCcceEEeCC
Confidence            35566665  8999999999 8899999999    8999999997 557777764

>KOG1615|consensus

Probab=98.62  E-value=4.4e-08  Score=86.92  Aligned_cols=109  Identities=24%  Similarity=0.252  Sum_probs=77.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeE--EEeecCCCCCCCCCceEEEecCcchhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETV--VDVSAVPGGLKECPKVYFTVSGVSAIQTKA  422 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~--i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~  422 (523)
                      -.++|++++.+..|+++|.++.++||.-...+.+++.+|||+..+.+.  +.+.                          
T Consensus        87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~fd--------------------------  140 (227)
T KOG1615|consen   87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELLFD--------------------------  140 (227)
T ss_pred             CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheeeec--------------------------
Confidence            347899999999999999999999999999999999999997532211  0000                          


Q ss_pred             hhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC--CCEEEEEcCCh
Q psy78           423 KKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL--GYYVAMCGDGA  500 (523)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~--~~~V~a~GDG~  500 (523)
                                            .+|+..-         +.      ..-.-+....|+.+++.+++.  ...++|+|||.
T Consensus       141 ----------------------~~Gk~~g---------fd------~~~ptsdsggKa~~i~~lrk~~~~~~~~mvGDGa  183 (227)
T KOG1615|consen  141 ----------------------KDGKYLG---------FD------TNEPTSDSGGKAEVIALLRKNYNYKTIVMVGDGA  183 (227)
T ss_pred             ----------------------cCCcccc---------cc------cCCccccCCccHHHHHHHHhCCChheeEEecCCc
Confidence                                  0000000         00      000111224799999999985  56799999999


Q ss_pred             hhHHHHHhCCccEEec
Q psy78           501 NDCGALRAAHAGISLS  516 (523)
Q Consensus       501 ND~~MLk~A~vGIAMg  516 (523)
                      ||++|+.-|+.=|+.|
T Consensus       184 tDlea~~pa~afi~~~  199 (227)
T KOG1615|consen  184 TDLEAMPPADAFIGFG  199 (227)
T ss_pred             cccccCCchhhhhccC
Confidence            9999999877655554

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=98.55  E-value=7.1e-08  Score=82.81  Aligned_cols=86  Identities=24%  Similarity=0.275  Sum_probs=73.0

Q ss_pred             HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78           353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE  432 (523)
Q Consensus       353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (523)
                      ..|+.+++.|+++.|+|||....+..-+++||+..                                             
T Consensus        42 ~Gik~l~~~Gi~vAIITGr~s~ive~Ra~~LGI~~---------------------------------------------   76 (170)
T COG1778          42 HGIKLLLKSGIKVAIITGRDSPIVEKRAKDLGIKH---------------------------------------------   76 (170)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCHHHHHHHHHcCCce---------------------------------------------
Confidence            57899999999999999999999999999999941                                             


Q ss_pred             hhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHh
Q psy78           433 ELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRA  508 (523)
Q Consensus       433 ~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~  508 (523)
                                                           ++  .-..+|..+.+.|.+.    .++++.+||-.||+|+|+.
T Consensus        77 -------------------------------------~~--qG~~dK~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm~~  117 (170)
T COG1778          77 -------------------------------------LY--QGISDKLAAFEELLKKLNLDPEEVAYVGDDLVDLPVMEK  117 (170)
T ss_pred             -------------------------------------ee--echHhHHHHHHHHHHHhCCCHHHhhhhcCccccHHHHHH
Confidence                                                 11  0126788888887775    5789999999999999999


Q ss_pred             CCccEEecccCCCC
Q psy78           509 AHAGISLSEAESPI  522 (523)
Q Consensus       509 A~vGIAMgna~~~v  522 (523)
                      .|+++|..+|.+.+
T Consensus       118 vGls~a~~dAh~~v  131 (170)
T COG1778         118 VGLSVAVADAHPLL  131 (170)
T ss_pred             cCCcccccccCHHH
Confidence            99999999998754

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=98.55  E-value=6.1e-07  Score=84.21  Aligned_cols=103  Identities=24%  Similarity=0.235  Sum_probs=77.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.+.++.|+++ +++.++||.....+..+.+++|+...-...+...+..                          
T Consensus        68 ~~~pg~~e~L~~L~~~-~~~~IvS~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~--------------------------  120 (205)
T PRK13582         68 DPLPGAVEFLDWLRER-FQVVILSDTFYEFAGPLMRQLGWPTLFCHSLEVDEDG--------------------------  120 (205)
T ss_pred             CCCCCHHHHHHHHHhc-CCEEEEeCCcHHHHHHHHHHcCCchhhcceEEECCCC--------------------------
Confidence            4689999999999999 9999999999999999999999852110001000000                          


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEE-cCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFA-RMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                        .                        .... ...|..|...++.++..++.++++|||.||++
T Consensus       121 ------------------~------------------------i~~~~~~~p~~k~~~l~~~~~~~~~~v~iGDs~~D~~  158 (205)
T PRK13582        121 ------------------M------------------------ITGYDLRQPDGKRQAVKALKSLGYRVIAAGDSYNDTT  158 (205)
T ss_pred             ------------------e------------------------EECccccccchHHHHHHHHHHhCCeEEEEeCCHHHHH
Confidence                              0                        0000 11356788888888888889999999999999


Q ss_pred             HHHhCCccEEecc
Q psy78           505 ALRAAHAGISLSE  517 (523)
Q Consensus       505 MLk~A~vGIAMgn  517 (523)
                      |.+.||+|++.+.
T Consensus       159 ~~~aa~~~v~~~~  171 (205)
T PRK13582        159 MLGEADAGILFRP  171 (205)
T ss_pred             HHHhCCCCEEECC
Confidence            9999999998764

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=98.55  E-value=2.7e-07  Score=87.62  Aligned_cols=106  Identities=26%  Similarity=0.301  Sum_probs=74.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++++.|+.|+++|+++.|+||.+...+..+++.+|++..-+..+..++..                          
T Consensus        85 ~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~--------------------------  138 (219)
T TIGR00338        85 PLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLDAAFANRLEVEDGK--------------------------  138 (219)
T ss_pred             CcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEeeEEEEECCE--------------------------
Confidence            589999999999999999999999999999999999999863100000000000                          


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEE-cCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFA-RMSSDQKQQLVLELQQL----GYYVAMCGDGA  500 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~p~~K~~~i~~L~~~----~~~V~a~GDG~  500 (523)
                                         +++                     .+.. ...+..|..+++.+.+.    .++++++||+.
T Consensus       139 -------------------~~~---------------------~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~  178 (219)
T TIGR00338       139 -------------------LTG---------------------LVEGPIVDASYKGKTLLILLRKEGISPENTVAVGDGA  178 (219)
T ss_pred             -------------------EEE---------------------EecCcccCCcccHHHHHHHHHHcCCCHHHEEEEECCH
Confidence                               000                     0000 01123466666666554    35799999999


Q ss_pred             hhHHHHHhCCccEEecc
Q psy78           501 NDCGALRAAHAGISLSE  517 (523)
Q Consensus       501 ND~~MLk~A~vGIAMgn  517 (523)
                      ||++|++.||++++|+.
T Consensus       179 ~Di~aa~~ag~~i~~~~  195 (219)
T TIGR00338       179 NDLSMIKAAGLGIAFNA  195 (219)
T ss_pred             HHHHHHHhCCCeEEeCC
Confidence            99999999999999964

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=98.47  E-value=5.1e-07  Score=84.51  Aligned_cols=109  Identities=17%  Similarity=0.142  Sum_probs=77.8

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCC-CCeEEE-eecCCCCCCCCCceEEEecCcchhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP-GETVVD-VSAVPGGLKECPKVYFTVSGVSAIQTK  421 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~-~~~~i~-~ng~~~~~~~~~~~~~~~~~~~~~~~~  421 (523)
                      ..++.+++.+.|+.++++|++++++||.+...+..+++.+|++.- ...+.. .+|                        
T Consensus        85 ~~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~~~~~~~l~~~~~g------------------------  140 (202)
T TIGR01490        85 ESILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGIDNAIGTRLEESEDG------------------------  140 (202)
T ss_pred             HHhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCcceEecceEEcCCC------------------------
Confidence            456899999999999999999999999999999999999998621 000000 000                        


Q ss_pred             hhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEc
Q psy78           422 AKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCG  497 (523)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~G  497 (523)
                                            ..+|+                    .....+.++.|...++.+.+.    .+.++++|
T Consensus       141 ----------------------~~~g~--------------------~~~~~~~g~~K~~~l~~~~~~~~~~~~~~~~~g  178 (202)
T TIGR01490       141 ----------------------IYTGN--------------------IDGNNCKGEGKVHALAELLAEEQIDLKDSYAYG  178 (202)
T ss_pred             ----------------------EEeCC--------------------ccCCCCCChHHHHHHHHHHHHcCCCHHHcEeee
Confidence                                  00000                    000112356788878776653    34789999


Q ss_pred             CChhhHHHHHhCCccEEeccc
Q psy78           498 DGANDCGALRAAHAGISLSEA  518 (523)
Q Consensus       498 DG~ND~~MLk~A~vGIAMgna  518 (523)
                      |+.||++|++.||.++++...
T Consensus       179 Ds~~D~~~~~~a~~~~~v~~~  199 (202)
T TIGR01490       179 DSISDLPLLSLVGHPYVVNPD  199 (202)
T ss_pred             CCcccHHHHHhCCCcEEeCCC
Confidence            999999999999999988653

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=98.41  E-value=8.9e-07  Score=81.96  Aligned_cols=38  Identities=34%  Similarity=0.545  Sum_probs=36.0

Q ss_pred             cchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       349 ~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      +++.+.|+.++++|++++|+||.+...+.++++.+|++
T Consensus        92 ~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~  129 (192)
T PF12710_consen   92 PDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID  129 (192)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence            67779999999999999999999999999999999996

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=98.41  E-value=1.5e-06  Score=79.41  Aligned_cols=40  Identities=28%  Similarity=0.366  Sum_probs=38.0

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      +++++.+.++.++++|++++++||.+...+.++++.+|+.
T Consensus        74 ~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~  113 (177)
T TIGR01488        74 LRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID  113 (177)
T ss_pred             cCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence            6799999999999999999999999999999999999985

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=98.40  E-value=1.2e-06  Score=75.74  Aligned_cols=45  Identities=27%  Similarity=0.417  Sum_probs=40.7

Q ss_pred             eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ...++.+++.+.+++|+++|++++++||+....+...++.+|+..
T Consensus        21 ~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~~~   65 (139)
T cd01427          21 EELELYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGLDD   65 (139)
T ss_pred             ccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCCch
Confidence            344789999999999999999999999999999999999998853

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=98.40  E-value=2.5e-06  Score=80.67  Aligned_cols=115  Identities=10%  Similarity=0.059  Sum_probs=76.1

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK  423 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (523)
                      +.+++|++.+.++.|+++|+++.|+||.....+.++++.++..   ..+. .|......   ..+...            
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~---~~i~-~n~~~~~~---~~~~~~------------  128 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEK---DRIY-CNEADFSN---EYIHID------------  128 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCc---ccEE-eceeEeeC---CeeEEe------------
Confidence            3579999999999999999999999999999898888877432   1111 11110000   000000            


Q ss_pred             hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhH
Q psy78           424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDC  503 (523)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~  503 (523)
                                             ..        .+..        .....-....|..+++.++...+.++++|||.||+
T Consensus       129 -----------------------~p--------~~~~--------~~~~~~cg~~K~~~l~~~~~~~~~~i~iGDg~~D~  169 (214)
T TIGR03333       129 -----------------------WP--------HPCD--------GTCQNQCGCCKPSLIRKLSEPNDYHIVIGDSVTDV  169 (214)
T ss_pred             -----------------------CC--------CCCc--------cccccCCCCCHHHHHHHHhhcCCcEEEEeCCHHHH
Confidence                                   00        0000        00001113579999998887778899999999999


Q ss_pred             HHHHhCCccEEec
Q psy78           504 GALRAAHAGISLS  516 (523)
Q Consensus       504 ~MLk~A~vGIAMg  516 (523)
                      +|.+.||+++|=+
T Consensus       170 ~~a~~Ad~~~ar~  182 (214)
T TIGR03333       170 EAAKQSDLCFARD  182 (214)
T ss_pred             HHHHhCCeeEehH
Confidence            9999999987743

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=98.31  E-value=4.8e-06  Score=79.05  Aligned_cols=110  Identities=14%  Similarity=0.135  Sum_probs=73.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      +++|++.+.++.|+++|+++.|+||-....+.++.+.+ +..  ..++.... ....   ..+...              
T Consensus        74 ~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~~--~~i~~n~~-~~~~---~~~~~~--------------  132 (219)
T PRK09552         74 EIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IPK--EQIYCNGS-DFSG---EYITIT--------------  132 (219)
T ss_pred             CcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CCc--CcEEEeEE-EecC---CeeEEe--------------
Confidence            68999999999999999999999999999999999888 642  22222111 0000   000000              


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEE-EEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI-FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v-~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                                     .+.  +.     .. +.......|..+++.+....+.++++|||.||+.
T Consensus       133 -------------------------------kp~--p~-----~~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~  174 (219)
T PRK09552        133 -------------------------------WPH--PC-----DEHCQNHCGCCKPSLIRKLSDTNDFHIVIGDSITDLE  174 (219)
T ss_pred             -------------------------------ccC--Cc-----cccccccCCCchHHHHHHhccCCCCEEEEeCCHHHHH
Confidence                                           000  00     00 0000123488888888777788999999999999


Q ss_pred             HHHhCCccEE
Q psy78           505 ALRAAHAGIS  514 (523)
Q Consensus       505 MLk~A~vGIA  514 (523)
                      |.+.||+.+|
T Consensus       175 aa~~Ag~~~a  184 (219)
T PRK09552        175 AAKQADKVFA  184 (219)
T ss_pred             HHHHCCccee
Confidence            9999999776

>smart00775 LNS2 LNS2 domain

Probab=98.26  E-value=8.5e-06  Score=72.84  Aligned_cols=105  Identities=14%  Similarity=0.122  Sum_probs=73.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH---HHHHHc---CccCCCCeEEEeecCCCCCCCCCceEEEecCcch
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAI---SVAKEC---GIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA  417 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~---~ia~~l---gi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~  417 (523)
                      ++.+.+++++++++++++|++++++|||+...+.   ...+++   |...+..++++.|+.......             
T Consensus        25 ~~~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t~~~l~~~~~~~~~lp~g~li~~~g~~~~~~~-------------   91 (157)
T smart00775       25 KDWTHPGVAKLYRDIQNNGYKILYLTARPIGQADRTRSYLSQIKQDGHNLPHGPVLLSPDRLFAALH-------------   91 (157)
T ss_pred             cCcCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHHHHHHHHhhhccccCCCceEEEcCCcchhhhh-------------
Confidence            4678999999999999999999999999998874   566552   333344677777765421100             


Q ss_pred             hhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCCh-HhHHHHHHHHHHC-----CC
Q psy78           418 IQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSS-DQKQQLVLELQQL-----GY  491 (523)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p-~~K~~~i~~L~~~-----~~  491 (523)
                                                           .             .+. .-.| +.|...++.+.+.     ..
T Consensus        92 -------------------------------------~-------------e~i-~~~~~~~K~~~l~~i~~~~~~~~~~  120 (157)
T smart00775       92 -------------------------------------R-------------EVI-SKKPEVFKIACLRDIKSLFPPQGNP  120 (157)
T ss_pred             -------------------------------------c-------------ccc-cCCHHHHHHHHHHHHHHhcCCCCCC
Confidence                                                 0             011 1123 3477778877773     35


Q ss_pred             EEEEEcCChhhHHHHHhCCcc
Q psy78           492 YVAMCGDGANDCGALRAAHAG  512 (523)
Q Consensus       492 ~V~a~GDG~ND~~MLk~A~vG  512 (523)
                      -+++|||+.+|+.+-+++|+.
T Consensus       121 f~~~~gn~~~D~~~y~~~gi~  141 (157)
T smart00775      121 FYAGFGNRITDVISYSAVGIP  141 (157)
T ss_pred             EEEEeCCCchhHHHHHHcCCC
Confidence            567899999999999998864

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=98.26  E-value=3.1e-06  Score=77.99  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=76.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      -++.+++.+.++.|++.|+++.++|+.+...+..+.+.+|+...-+.++ .+.......  ..                 
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~~f~~i~-~~~~~~~~~--g~-----------------  130 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEKDVFIEIY-SNPASFDND--GR-----------------  130 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCChhheeEEe-ccCceECCC--Cc-----------------
Confidence            4789999999999999999999999999999999999998853211222 111100000  00                 


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEc-CChHhHHHHHHHHHHC-CCEEEEEcCChhh
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFAR-MSSDQKQQLVLELQQL-GYYVAMCGDGAND  502 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~~p~~K~~~i~~L~~~-~~~V~a~GDG~ND  502 (523)
                                        +.....                  ....+.. .....|..+++.+++. .+.++++|||.||
T Consensus       131 ------------------~~~~~~------------------~~~~~~~~~~g~~K~~~~~~~~~~~~~~~i~iGD~~~D  174 (188)
T TIGR01489       131 ------------------HIVWPH------------------HCHGCCSCPCGCCKGKVIHKLSEPKYQHIIYIGDGVTD  174 (188)
T ss_pred             ------------------EEEecC------------------CCCccCcCCCCCCHHHHHHHHHhhcCceEEEECCCcch
Confidence                              000000                  0000111 1123689999999887 8899999999999


Q ss_pred             HHHHHhCCccEE
Q psy78           503 CGALRAAHAGIS  514 (523)
Q Consensus       503 ~~MLk~A~vGIA  514 (523)
                      ++|-+.||+-.|
T Consensus       175 ~~aa~~~d~~~a  186 (188)
T TIGR01489       175 VCPAKLSDVVFA  186 (188)
T ss_pred             hchHhcCCcccc
Confidence            999999987554

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PLN02954 phosphoserine phosphatase

Probab=98.13  E-value=1.5e-05  Score=75.94  Aligned_cols=41  Identities=29%  Similarity=0.400  Sum_probs=38.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.++.|+++|+++.|+||.....+..+++.+|++
T Consensus        84 ~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~  124 (224)
T PLN02954         84 RLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP  124 (224)
T ss_pred             CCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence            47899999999999999999999999999999999999985

>PLN02580 trehalose-phosphatase

Probab=98.11  E-value=2.3e-05  Score=79.44  Aligned_cols=52  Identities=19%  Similarity=0.096  Sum_probs=42.0

Q ss_pred             EEcCChH---hHHHHHHHHHHCC----C-E--EEEEcCChhhHHHHHh-----CCccEEecccCCCC
Q psy78           471 FARMSSD---QKQQLVLELQQLG----Y-Y--VAMCGDGANDCGALRA-----AHAGISLSEAESPI  522 (523)
Q Consensus       471 ~~~~~p~---~K~~~i~~L~~~~----~-~--V~a~GDG~ND~~MLk~-----A~vGIAMgna~~~v  522 (523)
                      ..++.|.   +|+.+++.+.++.    . .  +++|||..||.+||+.     +|+||+|||+..+.
T Consensus       291 vlEVrP~~g~~KG~Av~~Ll~~~g~~~~d~~~pi~iGDD~TDedmF~~L~~~~~G~~I~Vgn~~~~t  357 (384)
T PLN02580        291 VLEVRPVIDWNKGKAVEFLLESLGLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSSVPKES  357 (384)
T ss_pred             EEEEecCCCCCHHHHHHHHHHhcCCCcccceeEEEECCCchHHHHHHhhhccCCceEEEEecCCCCc
Confidence            4566663   9999999998862    1 2  4899999999999996     69999999976543

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=98.03  E-value=1.4e-05  Score=89.60  Aligned_cols=49  Identities=10%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             ccceeeeeeeeccCCCcchHHHHHHH-HhCCCcEEEEcCCCHhhHHHHHH
Q psy78           333 KDLEFLGLIILENRLKPQTEGVIKEL-KDARVKVVMITGDNIQTAISVAK  381 (523)
Q Consensus       333 ~dl~~lG~i~~~d~lr~~t~~aI~~L-k~~Gi~vvi~TGr~~~~a~~ia~  381 (523)
                      -|+|++-.-.....+.+++.++|++| ++.|+.|+++|||+..+......
T Consensus       603 yDGTLlp~~~~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~~L~~~f~  652 (854)
T PLN02205        603 YDGTLMPQASIDKSPSSKSIDILNTLCRDKNNMVFIVSARSRKTLADWFS  652 (854)
T ss_pred             cCCcccCCccccCCCCHHHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHhC
Confidence            34455433222336778999999997 78899999999999999887654

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=98.02  E-value=3.7e-05  Score=72.36  Aligned_cols=107  Identities=14%  Similarity=0.099  Sum_probs=74.5

Q ss_pred             CCCcchHHHHH-HHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           346 RLKPQTEGVIK-ELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       346 ~lr~~t~~aI~-~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .+.|++.++|+ .++++|++++|+|+-+...+.++++..++... ..+++.+ ....                       
T Consensus        94 ~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~~~~~~~-~~~i~t~-le~~-----------------------  148 (210)
T TIGR01545        94 TAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFDSNFIHR-LNLIASQ-IERG-----------------------  148 (210)
T ss_pred             CCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHhcccccc-CcEEEEE-eEEe-----------------------
Confidence            57899999996 78889999999999999999999999766421 1222111 0000                       


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH-CCCEEEEEcCChhhH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ-LGYYVAMCGDGANDC  503 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~-~~~~V~a~GDG~ND~  503 (523)
                                           +|.                   ......+..+.|..-++.... ..+...|-||+.||.
T Consensus       149 ---------------------~gg-------------------~~~g~~c~g~~Kv~rl~~~~~~~~~~~~aYsDS~~D~  188 (210)
T TIGR01545       149 ---------------------NGG-------------------WVLPLRCLGHEKVAQLEQKIGSPLKLYSGYSDSKQDN  188 (210)
T ss_pred             ---------------------CCc-------------------eEcCccCCChHHHHHHHHHhCCChhheEEecCCcccH
Confidence                                 000                   001123455788887775543 234567999999999


Q ss_pred             HHHHhCCccEEecc
Q psy78           504 GALRAAHAGISLSE  517 (523)
Q Consensus       504 ~MLk~A~vGIAMgn  517 (523)
                      |||+.||.++++..
T Consensus       189 pmL~~a~~~~~Vnp  202 (210)
T TIGR01545       189 PLLAFCEHRWRVSK  202 (210)
T ss_pred             HHHHhCCCcEEECc
Confidence            99999999998864

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=97.99  E-value=5.4e-05  Score=71.91  Aligned_cols=44  Identities=27%  Similarity=0.353  Sum_probs=41.0

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ...+-|++++++..|+++|++..++|+++...+..+.+.+|+..
T Consensus        87 ~~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~~  130 (220)
T COG0546          87 ESRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLAD  130 (220)
T ss_pred             cCccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCcc
Confidence            55788999999999999999999999999999999999999864

>PRK08238 hypothetical protein; Validated

Probab=97.98  E-value=3.9e-05  Score=80.81  Aligned_cols=97  Identities=18%  Similarity=0.203  Sum_probs=71.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      +++|++.+.+++++++|++++++||.+...+..+++.+|+.   +.++..++.                           
T Consensus        72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGlF---d~Vigsd~~---------------------------  121 (479)
T PRK08238         72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGLF---DGVFASDGT---------------------------  121 (479)
T ss_pred             CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC---CEEEeCCCc---------------------------
Confidence            47899999999999999999999999999999999999972   122222110                           


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGA  505 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~M  505 (523)
                                                                    ....|+.|...++..... +...++||+.||++|
T Consensus       122 ----------------------------------------------~~~kg~~K~~~l~~~l~~-~~~~yvGDS~~Dlp~  154 (479)
T PRK08238        122 ----------------------------------------------TNLKGAAKAAALVEAFGE-RGFDYAGNSAADLPV  154 (479)
T ss_pred             ----------------------------------------------cccCCchHHHHHHHHhCc-cCeeEecCCHHHHHH
Confidence                                                          123345565554432222 336778999999999


Q ss_pred             HHhCCccEEecccC
Q psy78           506 LRAAHAGISLSEAE  519 (523)
Q Consensus       506 Lk~A~vGIAMgna~  519 (523)
                      ++.||-+++++...
T Consensus       155 ~~~A~~av~Vn~~~  168 (479)
T PRK08238        155 WAAARRAIVVGASP  168 (479)
T ss_pred             HHhCCCeEEECCCH
Confidence            99999999998653

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=97.95  E-value=7e-05  Score=71.22  Aligned_cols=43  Identities=21%  Similarity=0.301  Sum_probs=39.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ..++.|++.++++.|+++|++++++||.....+....+.+|+.
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~  133 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA  133 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc
Confidence            3568899999999999999999999999999999999999885

>PRK11590 hypothetical protein; Provisional

Probab=97.95  E-value=5e-05  Score=71.61  Aligned_cols=107  Identities=12%  Similarity=0.012  Sum_probs=75.2

Q ss_pred             CCCcchHHHH-HHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           346 RLKPQTEGVI-KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       346 ~lr~~t~~aI-~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .+.|++.+.| +.++++|++++++|+.+..-+.++++.+|+.. ...+++..- .                         
T Consensus        95 ~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~~~~-~~~~i~t~l-~-------------------------  147 (211)
T PRK11590         95 TAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTPWLP-RVNLIASQM-Q-------------------------  147 (211)
T ss_pred             cCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHccccc-cCceEEEEE-E-------------------------
Confidence            4589999999 57888999999999999999999999999631 122322110 0                         


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH-CCCEEEEEcCChhhH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ-LGYYVAMCGDGANDC  503 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~-~~~~V~a~GDG~ND~  503 (523)
                                        ...+|.                    .....+..+.|...++.... ......|-||+.||.
T Consensus       148 ------------------~~~tg~--------------------~~g~~c~g~~K~~~l~~~~~~~~~~~~aY~Ds~~D~  189 (211)
T PRK11590        148 ------------------RRYGGW--------------------VLTLRCLGHEKVAQLERKIGTPLRLYSGYSDSKQDN  189 (211)
T ss_pred             ------------------EEEccE--------------------ECCccCCChHHHHHHHHHhCCCcceEEEecCCcccH
Confidence                              000010                    01123455788887776542 345568999999999


Q ss_pred             HHHHhCCccEEecc
Q psy78           504 GALRAAHAGISLSE  517 (523)
Q Consensus       504 ~MLk~A~vGIAMgn  517 (523)
                      |||+.|+.++++..
T Consensus       190 pmL~~a~~~~~vnp  203 (211)
T PRK11590        190 PLLYFCQHRWRVTP  203 (211)
T ss_pred             HHHHhCCCCEEECc
Confidence            99999999998864

>TIGR00685 T6PP trehalose-phosphatase

Probab=97.92  E-value=4.2e-05  Score=73.85  Aligned_cols=41  Identities=22%  Similarity=0.220  Sum_probs=35.6

Q ss_pred             hHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC--------CccEEec
Q psy78           476 SDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA--------HAGISLS  516 (523)
Q Consensus       476 p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A--------~vGIAMg  516 (523)
                      +.+|+.+++.+.+.    ...++++||+.||.+|++.+        +.||+|+
T Consensus       165 ~~~Kg~a~~~~~~~~~~~~~~~i~iGD~~~D~~~~~~~~~~~~~~g~~~v~v~  217 (244)
T TIGR00685       165 FVNKGEIVKRLLWHQPGSGISPVYLGDDITDEDAFRVVNNQWGNYGFYPVPIG  217 (244)
T ss_pred             CCCHHHHHHHHHHhcccCCCceEEEcCCCcHHHHHHHHhcccCCCCeEEEEEe
Confidence            34899999998876    35799999999999999999        5899995

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=97.78  E-value=0.00018  Score=70.58  Aligned_cols=42  Identities=19%  Similarity=0.206  Sum_probs=38.3

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.|++.++|+.|+++|++++++||.+...+..+.+.+|+.
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~  141 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG  141 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH
Confidence            467899999999999999999999999998888888888875

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=97.77  E-value=0.00017  Score=67.60  Aligned_cols=42  Identities=21%  Similarity=0.313  Sum_probs=38.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.+++.++|++|+++|+++.++||.+...+....+.+|+.
T Consensus        74 ~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~  115 (205)
T TIGR01454        74 VEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL  115 (205)
T ss_pred             cccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh
Confidence            367899999999999999999999999999898888999885

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=97.76  E-value=0.00018  Score=67.67  Aligned_cols=41  Identities=15%  Similarity=0.258  Sum_probs=38.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|+.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus        85 ~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~  125 (213)
T TIGR01449        85 SVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA  125 (213)
T ss_pred             ccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH
Confidence            68899999999999999999999999999999999999985

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=97.69  E-value=0.00023  Score=69.01  Aligned_cols=45  Identities=18%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG  389 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~  389 (523)
                      -+++|++.+.++.|+++|+++.++||-....+..+++++|+..+.
T Consensus       120 l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~  164 (277)
T TIGR01544       120 VMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPN  164 (277)
T ss_pred             CccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcC
Confidence            468999999999999999999999999999999999999986544

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=97.68  E-value=0.00016  Score=68.66  Aligned_cols=43  Identities=14%  Similarity=0.166  Sum_probs=39.5

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      .++.|++.++|+.|+++|++++++||.....+..+.+.+|+..
T Consensus        91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~~  133 (222)
T PRK10826         91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLRD  133 (222)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcchh
Confidence            4688999999999999999999999999999999999999863

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=97.60  E-value=0.00031  Score=66.30  Aligned_cols=41  Identities=20%  Similarity=0.061  Sum_probs=38.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|+.|+++|+++.++||.+...+..+.+.+|+.
T Consensus        82 ~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~  122 (214)
T PRK13288         82 TEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD  122 (214)
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence            47899999999999999999999999999999999999985

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=97.53  E-value=0.00073  Score=64.56  Aligned_cols=42  Identities=19%  Similarity=0.142  Sum_probs=37.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus        94 ~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~  135 (229)
T PRK13226         94 SQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE  135 (229)
T ss_pred             CeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch
Confidence            357899999999999999999999999988888888888875

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=97.53  E-value=0.00031  Score=64.12  Aligned_cols=52  Identities=19%  Similarity=0.208  Sum_probs=43.0

Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCC
Q psy78           348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG  401 (523)
Q Consensus       348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~  401 (523)
                      .+.+...+.+|+++|+.|+.+|.........+-+.+|+.+  -+.+.-||..++
T Consensus        25 ~~pA~pv~~el~d~G~~Vi~~SSKT~aE~~~l~~~l~v~~--~p~iaEnG~aI~   76 (274)
T COG3769          25 WQPAAPVLLELKDAGVPVILCSSKTRAEMLYLQKSLGVQG--LPLIAENGAAIY   76 (274)
T ss_pred             CCccchHHHHHHHcCCeEEEeccchHHHHHHHHHhcCCCC--CceeecCCceEE
Confidence            3567899999999999999999999999999999999863  456666666544

>PLN03017 trehalose-phosphatase

Probab=97.47  E-value=0.001  Score=66.98  Aligned_cols=62  Identities=10%  Similarity=0.083  Sum_probs=46.5

Q ss_pred             cceeeeeeeecc--CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCC
Q psy78           334 DLEFLGLIILEN--RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG  401 (523)
Q Consensus       334 dl~~lG~i~~~d--~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~  401 (523)
                      |+|++-+..-.+  .+.++++++|++|+ +|+.++++|||+...+..+.   ++  .+-+++..||....
T Consensus       119 DGTL~Piv~~p~~a~i~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~---~l--~~l~l~g~hGa~i~  182 (366)
T PLN03017        119 DGTLSPIVDDPDKAFMSSKMRRTVKKLA-KCFPTAIVTGRCIDKVYNFV---KL--AELYYAGSHGMDIK  182 (366)
T ss_pred             CCcCcCCcCCcccccCCHHHHHHHHHHh-cCCcEEEEeCCCHHHHHHhh---cc--cCceEEEcCCcEEe
Confidence            455554443223  48899999999999 78999999999999988773   33  34567888887654

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.44  E-value=7.4e-05  Score=71.42  Aligned_cols=54  Identities=24%  Similarity=0.399  Sum_probs=48.5

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccc
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVIN  261 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~  261 (523)
                      .+.++...+.+++++++++|||+||+++++++.+++.+|+|+                           |+++|+++++|
T Consensus       177 ~~~~~~~~~~~~i~~l~~~~P~~l~~~~~~~~~~~~~~~~~~---------------------------~i~v~~~~a~E  229 (230)
T PF00122_consen  177 SGISFFKSFLFAISLLIVLIPCALPLALPLSLAIAARRLAKN---------------------------GIIVKNLSALE  229 (230)
T ss_dssp             TTCHCCHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHHHHHT---------------------------TEEESSTTHHH
T ss_pred             cccccccccccccceeeeecccceeehHHHHHHHHHHHHHHC---------------------------CEEEeCccccc
Confidence            345667899999999999999999999999999999999999                           99999999887


Q ss_pred             c
Q psy78           262 V  262 (523)
Q Consensus       262 ~  262 (523)
                      .
T Consensus       230 ~  230 (230)
T PF00122_consen  230 A  230 (230)
T ss_dssp             H
T ss_pred             C
Confidence            3

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=97.44  E-value=0.00092  Score=63.31  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=39.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.+++.+.|+.|+++|+++.++||.+...+..+.+.+|+.
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~  127 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWT  127 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhh
Confidence            478999999999999999999999999999999999999875

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=97.44  E-value=0.00078  Score=62.69  Aligned_cols=43  Identities=21%  Similarity=0.325  Sum_probs=38.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+++.+...++|+.|+++|+++.++||.+...+..+.+.+|+.
T Consensus       104 ~~~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~  146 (197)
T TIGR01548       104 EDETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE  146 (197)
T ss_pred             ccccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch
Confidence            3446667799999999999999999999999999999999985

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.42  E-value=0.00065  Score=67.70  Aligned_cols=44  Identities=14%  Similarity=0.180  Sum_probs=41.0

Q ss_pred             eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ..+++.+++.++|++|+++|++++++|||+...+..+.+.+++.
T Consensus       184 ~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~~~~~l~~l~~~  227 (300)
T PHA02530        184 KEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVCEEDTVEWLRQT  227 (300)
T ss_pred             ccCCCChhHHHHHHHHHhCCCEEEEEeCCChhhHHHHHHHHHHc
Confidence            56789999999999999999999999999999999999999875

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.00068  Score=60.15  Aligned_cols=110  Identities=11%  Similarity=0.095  Sum_probs=72.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCC-CCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDP-GETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~-~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .++|+-++.++.++++++.++++||....-+.++.++++=... .+.-+..|...+...                     
T Consensus        73 ~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgke~i~~idi~sn~~~ih~d---------------------  131 (220)
T COG4359          73 KIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGKERIYCIDIVSNNDYIHID---------------------  131 (220)
T ss_pred             ccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccccceeeeEEeecCceEcCC---------------------
Confidence            5899999999999999999999999998888888887651100 001111111100000                     


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                    ..+.+..+                        .......+|...|+.+++..+.+.++|||.-|++
T Consensus       132 --------------g~h~i~~~------------------------~ds~fG~dK~~vI~~l~e~~e~~fy~GDsvsDls  173 (220)
T COG4359         132 --------------GQHSIKYT------------------------DDSQFGHDKSSVIHELSEPNESIFYCGDSVSDLS  173 (220)
T ss_pred             --------------CceeeecC------------------------CccccCCCcchhHHHhhcCCceEEEecCCccccc
Confidence                          00000000                        0011224899999999999999999999999999


Q ss_pred             HHHhCCccEE
Q psy78           505 ALRAAHAGIS  514 (523)
Q Consensus       505 MLk~A~vGIA  514 (523)
                      +=+.+|+=.|
T Consensus       174 aaklsDllFA  183 (220)
T COG4359         174 AAKLSDLLFA  183 (220)
T ss_pred             HhhhhhhHhh
Confidence            9888876544

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=97.30  E-value=0.00072  Score=64.52  Aligned_cols=40  Identities=18%  Similarity=0.160  Sum_probs=35.5

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCC----CHhhHHHHHHHcCcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGD----NIQTAISVAKECGII  386 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr----~~~~a~~ia~~lgi~  386 (523)
                      +.+.+++.|+.++++|+++.++|+|    ...++..+.+.+|++
T Consensus       115 p~~~a~elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~  158 (237)
T TIGR01672       115 PKEVARQLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP  158 (237)
T ss_pred             chhHHHHHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc
Confidence            4455999999999999999999999    667888999999995

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=97.25  E-value=0.0012  Score=62.86  Aligned_cols=41  Identities=17%  Similarity=0.149  Sum_probs=35.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCC----HhhHHHHHHHcCc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDN----IQTAISVAKECGI  385 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~----~~~a~~ia~~lgi  385 (523)
                      -.+.+++++.|+.++++|+++.++|||+    ..++..+.+.+|+
T Consensus       113 a~p~~Ga~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gi  157 (237)
T PRK11009        113 SIPKEVARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHI  157 (237)
T ss_pred             CcchHHHHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCC
Confidence            4467889999999999999999999996    4477788888888

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=97.21  E-value=0.0036  Score=58.21  Aligned_cols=41  Identities=15%  Similarity=0.288  Sum_probs=37.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|++|+++|+++.++|+-+...+....+.+|+.
T Consensus        92 ~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~  132 (198)
T TIGR01428        92 PPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD  132 (198)
T ss_pred             CCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh
Confidence            57799999999999999999999999988888888889875

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=97.20  E-value=0.0023  Score=61.98  Aligned_cols=42  Identities=17%  Similarity=0.086  Sum_probs=38.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++.|++.++|+.|+++|+++.|+|+.+...+....+.+|+..
T Consensus       108 ~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~  149 (248)
T PLN02770        108 KPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLSD  149 (248)
T ss_pred             CcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCChh
Confidence            578999999999999999999999999999999999999863

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=97.20  E-value=0.0017  Score=63.64  Aligned_cols=41  Identities=12%  Similarity=0.268  Sum_probs=38.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.|+.|+++|+++.++|+.+...+....+.+|+.
T Consensus       142 ~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~  182 (273)
T PRK13225        142 QLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR  182 (273)
T ss_pred             CcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh
Confidence            57899999999999999999999999999999999999985

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=97.17  E-value=0.0019  Score=55.81  Aligned_cols=41  Identities=29%  Similarity=0.394  Sum_probs=36.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCC--------HhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDN--------IQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~--------~~~a~~ia~~lgi~  386 (523)
                      ++.+++.++++.|+++|++++++|+.+        ...+....+.+|+.
T Consensus        25 ~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~   73 (132)
T TIGR01662        25 ILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP   73 (132)
T ss_pred             eeCCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence            578999999999999999999999998        66777788888873

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=97.16  E-value=0.0024  Score=61.91  Aligned_cols=42  Identities=24%  Similarity=0.181  Sum_probs=38.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++.|++.+.|+.|+++|+++.++||.+...+..+.+.+|+..
T Consensus        99 ~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~  140 (253)
T TIGR01422        99 SPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG  140 (253)
T ss_pred             ccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999999999999998863

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=97.08  E-value=0.0032  Score=59.57  Aligned_cols=41  Identities=17%  Similarity=0.254  Sum_probs=37.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|++|+++|++++++|+.+...+....+.+|+.
T Consensus        94 ~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~  134 (221)
T TIGR02253        94 RVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR  134 (221)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH
Confidence            57899999999999999999999999888888888888885

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=96.98  E-value=0.0067  Score=57.69  Aligned_cols=42  Identities=14%  Similarity=0.211  Sum_probs=37.3

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.|++.+.++.|+++|+++.++|+-+...+....+.+|+.
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~  133 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD  133 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH
Confidence            357899999999999999999999998888888877888875

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=96.97  E-value=0.0057  Score=59.52  Aligned_cols=42  Identities=14%  Similarity=0.294  Sum_probs=38.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++.+++++.|+.|+++|+++.|+|+.+...+..+.+.+|+..
T Consensus       109 ~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~~  150 (260)
T PLN03243        109 RLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGMEG  150 (260)
T ss_pred             ccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCHh
Confidence            578999999999999999999999999999999999999853

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=96.96  E-value=0.0037  Score=56.21  Aligned_cols=43  Identities=14%  Similarity=0.255  Sum_probs=39.6

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ..++.+++.++|++|+++|++++++|+.+...+....+++|+.
T Consensus        75 ~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~  117 (176)
T PF13419_consen   75 KLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD  117 (176)
T ss_dssp             GEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG
T ss_pred             ccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc
Confidence            4468899999999999999999999999999999999999986

...

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=96.95  E-value=0.0029  Score=60.03  Aligned_cols=43  Identities=14%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             cCCCcchHHHHHHH--HhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           345 NRLKPQTEGVIKEL--KDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       345 d~lr~~t~~aI~~L--k~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      =|+.|+.+++++.+  ++.|+.+.|+|.-+..-...+.+.-|+..
T Consensus        70 ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~~  114 (234)
T PF06888_consen   70 IPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLRD  114 (234)
T ss_pred             CCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCcc
Confidence            36789999999999  56799999999999999999999999864

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=96.88  E-value=0.0027  Score=58.13  Aligned_cols=39  Identities=21%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|+.|+++|+++.++|+...  +....+.+|+.
T Consensus        87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--~~~~l~~~~l~  125 (185)
T TIGR01990        87 DVLPGIKNLLDDLKKNNIKIALASASKN--APTVLEKLGLI  125 (185)
T ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCcc--HHHHHHhcCcH
Confidence            6789999999999999999999998643  45667778875

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=96.86  E-value=0.009  Score=54.44  Aligned_cols=40  Identities=18%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++++.|+++|++++++|+-+... ..+..++|+.
T Consensus        85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~  124 (183)
T TIGR01509        85 KPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR  124 (183)
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH
Confidence            678999999999999999999999988877 5555557775

HAD subfamilies caused by an overly broad single model.

>PRK11587 putative phosphatase; Provisional

Probab=96.84  E-value=0.0085  Score=56.67  Aligned_cols=40  Identities=15%  Similarity=0.292  Sum_probs=34.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI  385 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi  385 (523)
                      ++.|++.++|+.|+++|+++.++|+.+...+....+..|+
T Consensus        83 ~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l  122 (218)
T PRK11587         83 TALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGL  122 (218)
T ss_pred             eeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCC
Confidence            5789999999999999999999999887766666666666

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=96.83  E-value=0.0081  Score=58.77  Aligned_cols=41  Identities=20%  Similarity=0.105  Sum_probs=36.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++-|++.++|+.|+++|+++.++||.+...+..+.+.+++.
T Consensus       101 ~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~  141 (267)
T PRK13478        101 TPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQ  141 (267)
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhc
Confidence            56899999999999999999999999999888888877764

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=96.81  E-value=0.003  Score=57.90  Aligned_cols=40  Identities=20%  Similarity=0.306  Sum_probs=35.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.|++.++|+.|+++|+++.++|+.  ..+..+.+.+|++
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~  126 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT  126 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH
Confidence            468999999999999999999999998  5577778888875

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=96.77  E-value=0.01  Score=53.79  Aligned_cols=50  Identities=18%  Similarity=0.107  Sum_probs=41.4

Q ss_pred             eeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCC-CHhhHHHHHHHcCcc
Q psy78           337 FLGLIILENRLKPQTEGVIKELKDARVKVVMITGD-NIQTAISVAKECGII  386 (523)
Q Consensus       337 ~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr-~~~~a~~ia~~lgi~  386 (523)
                      ......-+-++.|++.++++.|+++|+++.++|+. ....+..+.+.+|+.
T Consensus        36 ~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~~~L~~~~l~   86 (174)
T TIGR01685        36 IIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAYEILGTFEIT   86 (174)
T ss_pred             EEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHhCCcC
Confidence            44444445568899999999999999999999987 888888888888874

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=96.74  E-value=0.011  Score=60.20  Aligned_cols=41  Identities=15%  Similarity=0.276  Sum_probs=38.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.+++.+.|+.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus       216 ~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~  256 (381)
T PLN02575        216 RLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR  256 (381)
T ss_pred             CcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH
Confidence            46799999999999999999999999999999999999985

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=96.74  E-value=0.0062  Score=64.55  Aligned_cols=42  Identities=7%  Similarity=0.159  Sum_probs=39.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++.|++.+.|+.|+++|+++.++|+.+...+..+.+.+|+..
T Consensus       330 ~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~~  371 (459)
T PRK06698        330 ALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLDQ  371 (459)
T ss_pred             CcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcHh
Confidence            678999999999999999999999999999999999999853

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=96.73  E-value=0.008  Score=59.43  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=34.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECG  384 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lg  384 (523)
                      ++.|++.+.|+.|+++|+++.++|+.+......+.+.++
T Consensus       144 ~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~  182 (286)
T PLN02779        144 PLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLL  182 (286)
T ss_pred             CchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhc
Confidence            578999999999999999999999998888877766553

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=96.61  E-value=0.014  Score=56.71  Aligned_cols=43  Identities=9%  Similarity=0.140  Sum_probs=34.2

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH---HHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTA---ISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a---~~ia~~lgi~  386 (523)
                      ..++-|++.+.++.|+++|+++.++|+|+....   ....+..|+.
T Consensus       116 ~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~~~~~T~~~Lkk~Gi~  161 (266)
T TIGR01533       116 QAKPVAGALDFLNYANSKGVKIFYVSNRSEKEKAATLKNLKRFGFP  161 (266)
T ss_pred             CCCcCccHHHHHHHHHHCCCeEEEEeCCCcchHHHHHHHHHHcCcC
Confidence            345679999999999999999999999985443   3455667774

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>KOG3120|consensus

Probab=96.59  E-value=0.0094  Score=54.72  Aligned_cols=116  Identities=17%  Similarity=0.178  Sum_probs=75.6

Q ss_pred             cCCCcchHHHHHHHHhCCC-cEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARV-KVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK  423 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi-~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (523)
                      =|+.|+..++|+.+++.|. .+.|+|--+...+..+.+..|+..-=.. |.-|.+..+....                  
T Consensus        83 iP~~Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~d~F~~-IfTNPa~~da~G~------------------  143 (256)
T KOG3120|consen   83 IPIVPGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIHDLFSE-IFTNPACVDASGR------------------  143 (256)
T ss_pred             CCCCccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHHHHHHH-HhcCCcccCCCCc------------------
Confidence            3678999999999999997 8999999999999999999987420000 1111111110000                  


Q ss_pred             hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHh--HHHHHHHHHHC-------CCEEE
Q psy78           424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQ--KQQLVLELQQL-------GYYVA  494 (523)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~--K~~~i~~L~~~-------~~~V~  494 (523)
                                         +.+.+         ++         ...-|...|.+  |+.++..+...       -+.++
T Consensus       144 -------------------L~v~p---------yH---------~~hsC~~CPsNmCKg~Vl~~~~~s~~~~gv~yer~i  186 (256)
T KOG3120|consen  144 -------------------LLVRP---------YH---------TQHSCNLCPSNMCKGLVLDELVASQLKDGVRYERLI  186 (256)
T ss_pred             -------------------EEeec---------CC---------CCCccCcCchhhhhhHHHHHHHHHHhhcCCceeeEE
Confidence                               00000         00         01234445654  88888877653       24789


Q ss_pred             EEcCChhh-HHHHHhCCccEEec
Q psy78           495 MCGDGAND-CGALRAAHAGISLS  516 (523)
Q Consensus       495 a~GDG~ND-~~MLk~A~vGIAMg  516 (523)
                      .+|||.|| +|+++..+--+||-
T Consensus       187 YvGDG~nD~CP~l~Lr~~D~amp  209 (256)
T KOG3120|consen  187 YVGDGANDFCPVLRLRACDVAMP  209 (256)
T ss_pred             EEcCCCCCcCcchhcccCceecc
Confidence            99999999 68888888888884

>TIGR01675 plant-AP plant acid phosphatase

Probab=96.53  E-value=0.018  Score=54.38  Aligned_cols=43  Identities=9%  Similarity=0.224  Sum_probs=34.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhh---HHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~---a~~ia~~lgi~  386 (523)
                      +-+.-|++.++++.|+++|++|+++|||+...   +..-.++.|++
T Consensus       118 ~apaip~al~l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~  163 (229)
T TIGR01675       118 AAPALPEGLKLYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFT  163 (229)
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCC
Confidence            34678999999999999999999999999765   33444556765

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=96.46  E-value=0.015  Score=51.37  Aligned_cols=41  Identities=20%  Similarity=0.370  Sum_probs=32.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCH---------------hhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNI---------------QTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~---------------~~a~~ia~~lgi~  386 (523)
                      ++.|++.++++.|+++|+++.++|..+.               ..+....+.+|+.
T Consensus        27 ~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~   82 (147)
T TIGR01656        27 QLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQLGVA   82 (147)
T ss_pred             EEcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHhCCCc
Confidence            4689999999999999999999998652               3445566677763

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PLN02940 riboflavin kinase

Probab=96.43  E-value=0.011  Score=61.06  Aligned_cols=41  Identities=17%  Similarity=0.194  Sum_probs=35.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHH-HcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK-ECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~-~lgi~  386 (523)
                      ++.|++.+.|+.|+++|+++.|+|+.+...+....+ ..|+.
T Consensus        93 ~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~  134 (382)
T PLN02940         93 KALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK  134 (382)
T ss_pred             CCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH
Confidence            577999999999999999999999998888776665 56764

>PRK06769 hypothetical protein; Validated

Probab=96.33  E-value=0.015  Score=52.86  Aligned_cols=27  Identities=26%  Similarity=0.361  Sum_probs=24.8

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCH
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNI  373 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~  373 (523)
                      +-|+++++|++|+++|+++.++|+.+.
T Consensus        29 ~~pgv~e~L~~Lk~~G~~l~I~Tn~~~   55 (173)
T PRK06769         29 LFPFTKASLQKLKANHIKIFSFTNQPG   55 (173)
T ss_pred             ECCCHHHHHHHHHHCCCEEEEEECCch
Confidence            679999999999999999999998763

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=96.30  E-value=0.023  Score=52.97  Aligned_cols=40  Identities=13%  Similarity=0.311  Sum_probs=33.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++-|++.++|+.|+++|+++.++|+-+.. +....+.+|+.
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~-~~~~l~~~~l~  144 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFDSR-LRGLLEALGLL  144 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCchh-HHHHHHHCCcH
Confidence            57799999999999999999999986654 46677777774

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=96.30  E-value=0.018  Score=50.98  Aligned_cols=40  Identities=18%  Similarity=0.318  Sum_probs=34.5

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      +....+++.+.++.|+++|+++.++|+.+...+....+..
T Consensus        62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~  101 (154)
T TIGR01549        62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH  101 (154)
T ss_pred             hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH
Confidence            3345689999999999999999999999999888777765

HAD subfamilies caused by an overly broad single model.

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=96.29  E-value=0.015  Score=52.62  Aligned_cols=40  Identities=33%  Similarity=0.412  Sum_probs=33.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCC-HhhHHHHHHHcCc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDN-IQTAISVAKECGI  385 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~-~~~a~~ia~~lgi  385 (523)
                      .+.+++.++|++|+++|++++++|+.+ ...+..+.+.+|+
T Consensus        43 ~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~~~~~~~~~~gl   83 (170)
T TIGR01668        43 EAYPALRDWIEELKAAGRKLLIVSNNAGEQRAKAVEKALGI   83 (170)
T ss_pred             CcChhHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHcCC
Confidence            577999999999999999999999988 5666667777765

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=96.24  E-value=0.025  Score=51.74  Aligned_cols=26  Identities=31%  Similarity=0.356  Sum_probs=24.3

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCC
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDN  372 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~  372 (523)
                      +.|++.++|++|+++|+++.++|..+
T Consensus        30 ~~pgv~e~L~~Lk~~g~~l~I~Tn~~   55 (181)
T PRK08942         30 PIPGSIEAIARLKQAGYRVVVATNQS   55 (181)
T ss_pred             ECCCHHHHHHHHHHCCCEEEEEeCCc
Confidence            67999999999999999999999876

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=96.24  E-value=0.0057  Score=54.10  Aligned_cols=42  Identities=14%  Similarity=0.056  Sum_probs=37.3

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .-+++|++.+.|+.|+ +++++.|+|.-+...+..+.+.+++.
T Consensus        43 ~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~~~~~~~il~~l~~~   84 (148)
T smart00577       43 YVKKRPGVDEFLKRAS-ELFELVVFTAGLRMYADPVLDLLDPK   84 (148)
T ss_pred             EEEECCCHHHHHHHHH-hccEEEEEeCCcHHHHHHHHHHhCcC
Confidence            3457999999999999 57999999999999999999988874

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=96.08  E-value=0.032  Score=50.09  Aligned_cols=40  Identities=25%  Similarity=0.364  Sum_probs=31.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCC---------------HhhHHHHHHHcCc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDN---------------IQTAISVAKECGI  385 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~---------------~~~a~~ia~~lgi  385 (523)
                      ++-|++.++|++|+++|++++++|--+               ...+..+.+++|+
T Consensus        29 ~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~~~gl   83 (161)
T TIGR01261        29 RFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFRSQGI   83 (161)
T ss_pred             eECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHHCCC
Confidence            356899999999999999999999742               3345566677776

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>PLN02151 trehalose-phosphatase

Probab=95.92  E-value=0.055  Score=54.48  Aligned_cols=48  Identities=6%  Similarity=0.097  Sum_probs=36.0

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCC
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPG  400 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~  400 (523)
                      +.++++++|++|. ++..++|+|||+...+..+.   ++.  .-.+...+|...
T Consensus       121 ~~~~~~~aL~~La-~~~~vaIvSGR~~~~l~~~~---~~~--~l~laGsHG~e~  168 (354)
T PLN02151        121 MSKKMRNTVRKLA-KCFPTAIVSGRCREKVSSFV---KLT--ELYYAGSHGMDI  168 (354)
T ss_pred             CCHHHHHHHHHHh-cCCCEEEEECCCHHHHHHHc---CCc--cceEEEeCCcee
Confidence            7899999999999 56799999999999887764   321  234555666553

>TIGR01686 FkbH FkbH-like domain

Probab=95.85  E-value=0.025  Score=56.86  Aligned_cols=36  Identities=19%  Similarity=0.219  Sum_probs=33.2

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHH
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE  382 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~  382 (523)
                      +.+++.++|++|+++|+++.++|.-+...+..+.+.
T Consensus        32 ~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a~~~l~~   67 (320)
T TIGR01686        32 LHKTLQEKIKTLKKQGFLLALASKNDEDDAKKVFER   67 (320)
T ss_pred             cHHHHHHHHHHHHhCCCEEEEEcCCCHHHHHHHHHh
Confidence            468999999999999999999999999999888877

The C-terminal portion of this domain is unique to this family (by BLAST).

>PLN02645 phosphoglycolate phosphatase

Probab=95.80  E-value=0.047  Score=54.70  Aligned_cols=48  Identities=17%  Similarity=0.300  Sum_probs=40.0

Q ss_pred             eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHH---HHcCcc
Q psy78           339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVA---KECGII  386 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia---~~lgi~  386 (523)
                      |++.-.+.+-|++.++|++|+++|++++++|+++..+...++   +.+|+.
T Consensus        37 Gtl~~~~~~~~ga~e~l~~lr~~g~~~~~~TN~~~~~~~~~~~~l~~lGi~   87 (311)
T PLN02645         37 GVIWKGDKLIEGVPETLDMLRSMGKKLVFVTNNSTKSRAQYGKKFESLGLN   87 (311)
T ss_pred             CCeEeCCccCcCHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHCCCC
Confidence            666666778899999999999999999999999977776666   456664

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=95.79  E-value=0.026  Score=48.47  Aligned_cols=39  Identities=10%  Similarity=0.073  Sum_probs=33.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCC-CHhhHHHHHHHcC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGD-NIQTAISVAKECG  384 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr-~~~~a~~ia~~lg  384 (523)
                      ++.+++.+.|+.|+++|+++.++|+. +...+..+.+..+
T Consensus        29 ~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~~l~~~~   68 (128)
T TIGR01681        29 VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYELLKIFE   68 (128)
T ss_pred             HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHHHHHhcc
Confidence            67899999999999999999999999 7776767666665

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=95.76  E-value=0.041  Score=51.94  Aligned_cols=41  Identities=15%  Similarity=0.324  Sum_probs=37.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++.|++.++|++|+++ ++++++|+.+...+....+.+|+..
T Consensus        97 ~~~~g~~~~L~~l~~~-~~~~i~Sn~~~~~~~~~l~~~~l~~  137 (224)
T TIGR02254        97 QLLPGAFELMENLQQK-FRLYIVTNGVRETQYKRLRKSGLFP  137 (224)
T ss_pred             eeCccHHHHHHHHHhc-CcEEEEeCCchHHHHHHHHHCCcHh
Confidence            5789999999999999 9999999999998888999999853

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PRK09449 dUMP phosphatase; Provisional

Probab=95.61  E-value=0.097  Score=49.53  Aligned_cols=40  Identities=18%  Similarity=0.236  Sum_probs=35.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|+.|+ +|+++.++|......+....+.+|+.
T Consensus        95 ~~~~g~~~~L~~L~-~~~~~~i~Tn~~~~~~~~~l~~~~l~  134 (224)
T PRK09449         95 TPLPGAVELLNALR-GKVKMGIITNGFTELQQVRLERTGLR  134 (224)
T ss_pred             ccCccHHHHHHHHH-hCCeEEEEeCCcHHHHHHHHHhCChH
Confidence            47899999999999 68999999998888888888888875

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=95.59  E-value=0.077  Score=47.86  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=31.1

Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCHh------------hHHHHHHHcCcc
Q psy78           348 KPQTEGVIKELKDARVKVVMITGDNIQ------------TAISVAKECGII  386 (523)
Q Consensus       348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~------------~a~~ia~~lgi~  386 (523)
                      -|++.++|++|+++|+++.++|..+..            .+..+.+.+|+.
T Consensus        44 ~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~~~~i~~~l~~~gl~   94 (166)
T TIGR01664        44 YPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVP   94 (166)
T ss_pred             cCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHHHHHHHHHHHHcCCC
Confidence            489999999999999999999965432            345667778873

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>PLN02811 hydrolase

Probab=95.56  E-value=0.062  Score=50.85  Aligned_cols=32  Identities=19%  Similarity=0.406  Sum_probs=27.8

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTA  376 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a  376 (523)
                      .++.|++.+.|+.|+++|+++.++||-+....
T Consensus        77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~  108 (220)
T PLN02811         77 SDLMPGAERLVRHLHAKGIPIAIATGSHKRHF  108 (220)
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCchhhH
Confidence            45789999999999999999999999876544

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=95.41  E-value=0.13  Score=48.59  Aligned_cols=41  Identities=7%  Similarity=0.180  Sum_probs=34.1

Q ss_pred             eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      .+.++.|++.++|++|+++|+++.|+|..+......+.+..
T Consensus        92 ~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~  132 (220)
T TIGR01691        92 LTSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHS  132 (220)
T ss_pred             cccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhc
Confidence            34568999999999999999999999998877666665544

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PF00689 Cation_ATPase_C: Cation transporting ATPase, C-terminus; InterPro: IPR006068 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.38  E-value=0.033  Score=50.94  Aligned_cols=99  Identities=17%  Similarity=0.268  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHhhhhcc-ccccccccCCCCccCCccchhHHHHHHHHHHhhheeeec--CCCcc-cccccchhHHHH
Q psy78             3 FQLILMVSMQIISFIIVHKF-AWFEPFVYTNAISYSCYENYAVFSISMFQYIILAITFSQ--GKPYR-TPIYKNKLFILS   78 (523)
Q Consensus         3 ~q~~i~~~~q~~~~~~~~~q-~w~~~~~~~~~~~~~~~~nt~~Fl~s~~qyi~~~~v~s~--G~Pfr-~~~~~N~~~~~~   78 (523)
                      .+-+++.++.+++|++.... .|-...    .+.......|+.|....+.++...++.-.  ++.|+ +++.+|+.+..+
T Consensus        56 ~~g~~~~~~~~~~f~~~~~~~~~~~~~----~~~~~~~a~T~~F~~lv~~q~~~~~~~r~~~~~~~~~~~~~~N~~l~~~  131 (182)
T PF00689_consen   56 IQGLIMAAACFFAFFLGLYIFGWDEET----NNDNLAQAQTMAFTALVLSQLFNAFNCRSRRRSVFRFRGIFSNKWLLIA  131 (182)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSTCSSSHH----HTTCHHHHHHHHHHHHHHHHHHHHHHTSSSSSTCTT-STGGGSHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccc----chhHHHHHHHHHHHHHHHHHHhhhcccccccccceecccccccchHHHH
Confidence            35566667777777665542 111000    00114557788899888888888766644  57788 899999999999


Q ss_pred             HHHHHHHhhheeecCchHHHHhccccCCC
Q psy78            79 IIIMTWVCIYITLIPSEFIIQFLQLRFPP  107 (523)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  107 (523)
                      +++.+++.+.++..|  .+++.|++.+++
T Consensus       132 ~~~~~~l~~~i~~~P--~~~~~f~~~~l~  158 (182)
T PF00689_consen  132 ILISIALQILIVYVP--GLNRIFGTAPLP  158 (182)
T ss_dssp             HHHHHHHHHHHHHST--THHHHST----T
T ss_pred             HHHHHHHHHHHhcch--hhHhhhcccCCC
Confidence            999998888777775  578889998665

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the conserved C-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+ (3.6.3.6 from EC), Na+ (3.6.3.7 from EC), Ca2+ (3.6.3.8 from EC), Na+/K+ (3.6.3.9 from EC), and H+/K+ (3.6.3.10 from EC). In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. More information about this protein can be found at Protein of the Month: ATP Synthases [].; PDB: 3A3Y_A 2ZXE_A 2XZB_A 3B9B_A 3N5K_A 3FPS_A 3B9R_A 1WPG_C 2AGV_A 2O9J_A ....

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=95.16  E-value=0.096  Score=50.37  Aligned_cols=48  Identities=19%  Similarity=0.190  Sum_probs=38.3

Q ss_pred             eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH--HHHHHcCcc
Q psy78           339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAI--SVAKECGII  386 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~--~ia~~lgi~  386 (523)
                      |.+.-..++-|++.++|++|+++|+++.++|.-+.....  ...+++|+.
T Consensus        17 G~l~~~~~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~~~~~~L~~~gl~   66 (242)
T TIGR01459        17 GVIIDGNHTYPGAVQNLNKIIAQGKPVYFVSNSPRNIFSLHKTLKSLGIN   66 (242)
T ss_pred             cccccCCccCccHHHHHHHHHHCCCEEEEEeCCCCChHHHHHHHHHCCCC
Confidence            555556778999999999999999999999986554443  566788885

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=95.04  E-value=0.037  Score=53.53  Aligned_cols=61  Identities=18%  Similarity=0.247  Sum_probs=50.4

Q ss_pred             eeeeeccCCCcchHHHHHHHHhCCCcEEEEcC---CCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78           339 GLIILENRLKPQTEGVIKELKDARVKVVMITG---DNIQTAISVAKECGIIDPGETVVDVSAVP  399 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TG---r~~~~a~~ia~~lgi~~~~~~~i~~ng~~  399 (523)
                      |++.-.+.+-+++.++|++|+++|++++++||   |+........+.+|++...+.+++.++..
T Consensus        10 Gtl~~~~~~i~~a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~   73 (249)
T TIGR01457        10 GTMYKGKERIPEAETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMAT   73 (249)
T ss_pred             CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHH
Confidence            55555666677999999999999999999995   88998888899999987667777776653

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=94.97  E-value=0.084  Score=46.59  Aligned_cols=67  Identities=21%  Similarity=0.315  Sum_probs=51.6

Q ss_pred             HHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78           297 LSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTA  376 (523)
Q Consensus       297 ~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a  376 (523)
                      .+.+..+|++.+.+-   +                  |.|++..  =..+..|+.++-+.+++++|++++++|--+...+
T Consensus        20 ~~~L~~~Gikgvi~D---l------------------DNTLv~w--d~~~~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV   76 (175)
T COG2179          20 PDILKAHGIKGVILD---L------------------DNTLVPW--DNPDATPELRAWLAELKEAGIKVVVVSNNKESRV   76 (175)
T ss_pred             HHHHHHcCCcEEEEe---c------------------cCceecc--cCCCCCHHHHHHHHHHHhcCCEEEEEeCCCHHHH
Confidence            456788898877643   1                  2233321  1234789999999999999999999999999999


Q ss_pred             HHHHHHcCcc
Q psy78           377 ISVAKECGII  386 (523)
Q Consensus       377 ~~ia~~lgi~  386 (523)
                      ...++.+|++
T Consensus        77 ~~~~~~l~v~   86 (175)
T COG2179          77 ARAAEKLGVP   86 (175)
T ss_pred             HhhhhhcCCc
Confidence            9999999985

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=94.94  E-value=0.11  Score=52.64  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGD  371 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr  371 (523)
                      -++.|++.++|++|+++|++++|+|+-
T Consensus        29 ~~l~pGV~e~L~~Lk~~G~kL~IvTNq   55 (354)
T PRK05446         29 LAFEPGVIPALLKLQKAGYKLVMVTNQ   55 (354)
T ss_pred             ceECcCHHHHHHHHHhCCCeEEEEECC
Confidence            457899999999999999999999983

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=94.90  E-value=0.16  Score=47.18  Aligned_cols=32  Identities=19%  Similarity=0.440  Sum_probs=27.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAI  377 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~  377 (523)
                      ++.|++.++|+.|+++|+++.++|.-+.....
T Consensus        84 ~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~  115 (199)
T PRK09456         84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHTT  115 (199)
T ss_pred             ccCHHHHHHHHHHHhCCCcEEEEcCCchhhHH
Confidence            47899999999999999999999998765543

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=94.79  E-value=0.045  Score=53.18  Aligned_cols=55  Identities=20%  Similarity=0.345  Sum_probs=42.1

Q ss_pred             eeeeeeccC----CCcchHHHHHHHHhCCCcEEEEcCCCHhh---HHHHHHHcCccCCCCeE
Q psy78           338 LGLIILENR----LKPQTEGVIKELKDARVKVVMITGDNIQT---AISVAKECGIIDPGETV  392 (523)
Q Consensus       338 lG~i~~~d~----lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~---a~~ia~~lgi~~~~~~~  392 (523)
                      =|++.-.++    +-|++.++|++|+++|++++++|||+..+   .....+++|++-..+.+
T Consensus         9 DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i   70 (257)
T TIGR01458         9 SGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEV   70 (257)
T ss_pred             CCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHe
Confidence            355555566    88999999999999999999999988776   45556677886433333

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=94.77  E-value=0.22  Score=45.32  Aligned_cols=27  Identities=19%  Similarity=0.256  Sum_probs=24.2

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCH
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNI  373 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~  373 (523)
                      +.|++.++|++|+++|+++.++|.-+.
T Consensus        27 ~~pgv~e~L~~Lk~~G~~l~i~TN~~~   53 (176)
T TIGR00213        27 FIDGVIDALRELKKMGYALVLVTNQSG   53 (176)
T ss_pred             ECCCHHHHHHHHHHCCCEEEEEeCCcc
Confidence            568999999999999999999997653

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=94.68  E-value=0.081  Score=49.57  Aligned_cols=30  Identities=27%  Similarity=0.376  Sum_probs=26.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQ  374 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~  374 (523)
                      -++.|++.++++.|+++|+++.++|..+..
T Consensus        93 ~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~  122 (211)
T TIGR02247        93 TKLRPSMMAAIKTLRAKGFKTACITNNFPT  122 (211)
T ss_pred             cccChhHHHHHHHHHHCCCeEEEEeCCCCc
Confidence            357899999999999999999999986543

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=94.37  E-value=0.11  Score=49.80  Aligned_cols=48  Identities=27%  Similarity=0.259  Sum_probs=32.2

Q ss_pred             EcCChHhHHHHHHHHHHCC-------CEEEEEcCChhhHHHHHhC------CccEEecccC
Q psy78           472 ARMSSDQKQQLVLELQQLG-------YYVAMCGDGANDCGALRAA------HAGISLSEAE  519 (523)
Q Consensus       472 ~~~~p~~K~~~i~~L~~~~-------~~V~a~GDG~ND~~MLk~A------~vGIAMgna~  519 (523)
                      .+..-.+|+.+++.+.+..       .-++++||...|-+|++..      |++|.++..+
T Consensus       159 vrp~~~~KG~av~~ll~~~~~~~~~~~~~l~~GDD~tDE~~f~~~~~~~~~~~~i~V~~~~  219 (235)
T PF02358_consen  159 VRPPGVNKGSAVRRLLEELPFAGPKPDFVLYIGDDRTDEDAFRALRELEEGGFGIKVGSVS  219 (235)
T ss_dssp             EE-TT--HHHHHHHHHTTS---------EEEEESSHHHHHHHHTTTTS----EEEEES---
T ss_pred             EEeCCCChHHHHHHHHHhcCccccccceeEEecCCCCCHHHHHHHHhcccCCCCeEEEeec
Confidence            3333347999999999873       2589999999999999983      5677777653

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>PLN02177 glycerol-3-phosphate acyltransferase

Probab=94.28  E-value=0.28  Score=52.17  Aligned_cols=42  Identities=19%  Similarity=0.154  Sum_probs=31.8

Q ss_pred             hHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecc
Q psy78           476 SDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSE  517 (523)
Q Consensus       476 p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgn  517 (523)
                      -++|...++..........+.||+.||.+||+.|+.+++.+.
T Consensus       174 Ge~Kv~rl~~~~g~~~~~~aYgDS~sD~plL~~a~e~y~V~~  215 (497)
T PLN02177        174 GDHKRDAVLKEFGDALPDLGLGDRETDHDFMSICKEGYMVPR  215 (497)
T ss_pred             cHHHHHHHHHHhCCCCceEEEECCccHHHHHHhCCccEEeCC
Confidence            357877776433221223899999999999999999999886

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=93.76  E-value=0.081  Score=45.15  Aligned_cols=33  Identities=12%  Similarity=0.075  Sum_probs=29.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHH
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAI  377 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~  377 (523)
                      +++.+++.+++++++++|+.++++|||+.....
T Consensus        23 ~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~   55 (126)
T TIGR01689        23 VAPILAVIEKLRHYKALGFEIVISSSRNMRTYE   55 (126)
T ss_pred             cccCHHHHHHHHHHHHCCCEEEEECCCCchhhh
Confidence            457889999999999999999999999987654

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=93.75  E-value=0.28  Score=57.30  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=37.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+-|++.+.|+.|+++|+++.|+|+.....+....+.+|+.
T Consensus       161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~  201 (1057)
T PLN02919        161 IGFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLP  201 (1057)
T ss_pred             ccCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCC
Confidence            36799999999999999999999999999998888999884

>COG4030 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.64  E-value=0.29  Score=45.30  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=29.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++++.|++.= ..+++|---.+-+..+|..+|+.
T Consensus        83 ~lvPgA~etm~~l~~~~-tp~v~STSY~qy~~r~a~~ig~P  122 (315)
T COG4030          83 KLVPGAEETMATLQERW-TPVVISTSYTQYLRRTASMIGVP  122 (315)
T ss_pred             ccCCChHHHHHHHhccC-CceEEeccHHHHHHHHHHhcCCC
Confidence            46799999999998874 44445544455677888888884

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=93.55  E-value=0.25  Score=45.11  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.+++.++|++|+   .+++++|..+...+....+.+|+.
T Consensus        84 ~~~~g~~~~L~~L~---~~~~i~Tn~~~~~~~~~l~~~gl~  121 (184)
T TIGR01993        84 KPDPELRNLLLRLP---GRKIIFTNGDRAHARRALNRLGIE  121 (184)
T ss_pred             CCCHHHHHHHHhCC---CCEEEEeCCCHHHHHHHHHHcCcH
Confidence            46789999999997   478999999998899999999985

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK10444 UMP phosphatase; Provisional

Probab=93.54  E-value=0.11  Score=50.22  Aligned_cols=56  Identities=20%  Similarity=0.310  Sum_probs=45.2

Q ss_pred             eeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc---CccCCCCeEE
Q psy78           338 LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC---GIIDPGETVV  393 (523)
Q Consensus       338 lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l---gi~~~~~~~i  393 (523)
                      =|++.-.+++-|++.++|++|+++|++++++|||+..+...+++++   |++-+.+.++
T Consensus         9 DGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~   67 (248)
T PRK10444          9 DGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFY   67 (248)
T ss_pred             CCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEe
Confidence            4667777788999999999999999999999999998888777764   6754444443

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=93.35  E-value=0.25  Score=45.21  Aligned_cols=38  Identities=18%  Similarity=0.164  Sum_probs=32.2

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      +.| ..+.|+.|++. ++..++||.+...+....+.+|+.
T Consensus        89 ~~~-~~e~L~~L~~~-~~l~I~T~~~~~~~~~~l~~~~l~  126 (188)
T PRK10725         89 PLP-LIEVVKAWHGR-RPMAVGTGSESAIAEALLAHLGLR  126 (188)
T ss_pred             Ccc-HHHHHHHHHhC-CCEEEEcCCchHHHHHHHHhCCcH
Confidence            344 46899999876 899999999999999999999985

>TIGR01684 viral_ppase viral phosphatase

Probab=93.34  E-value=0.24  Score=48.40  Aligned_cols=52  Identities=10%  Similarity=0.128  Sum_probs=42.9

Q ss_pred             CC-cchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78           347 LK-PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP  399 (523)
Q Consensus       347 lr-~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~  399 (523)
                      +| |++.++|++|+++|++++++|+.+...+....+++|++..- ..+..+|..
T Consensus       146 irdPgV~EaL~~LkekGikLaIaTS~~Re~v~~~L~~lGLd~YF-dvIIs~Gdv  198 (301)
T TIGR01684       146 IRDPRIYDSLTELKKRGCILVLWSYGDRDHVVESMRKVKLDRYF-DIIISGGHK  198 (301)
T ss_pred             cCCHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHcCCCccc-CEEEECCcc
Confidence            45 99999999999999999999999999999999999997422 345555543

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=93.28  E-value=0.2  Score=47.78  Aligned_cols=41  Identities=22%  Similarity=0.200  Sum_probs=31.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH---HHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAIS---VAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~---ia~~lgi~  386 (523)
                      +.-|++.+.++.++++|++|+++|||+...-..   =.++.|+.
T Consensus       115 ~aip~a~~l~~~~~~~G~~V~~iT~R~~~~r~~T~~nL~~~G~~  158 (229)
T PF03767_consen  115 PAIPGALELYNYARSRGVKVFFITGRPESQREATEKNLKKAGFP  158 (229)
T ss_dssp             EEETTHHHHHHHHHHTTEEEEEEEEEETTCHHHHHHHHHHHTTS
T ss_pred             cccHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHHHHHHcCCC
Confidence            456789999999999999999999998763222   24455654

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>PHA02597 30

Probab=93.19  E-value=0.38  Score=44.45  Aligned_cols=40  Identities=15%  Similarity=0.133  Sum_probs=27.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++-|++.+++++|++++ +.+++|..+........+.+++.
T Consensus        74 ~~~pG~~e~L~~L~~~~-~~~i~Tn~~~~~~~~~~~~~~l~  113 (197)
T PHA02597         74 SAYDDALDVINKLKEDY-DFVAVTALGDSIDALLNRQFNLN  113 (197)
T ss_pred             cCCCCHHHHHHHHHhcC-CEEEEeCCccchhHHHHhhCCHH
Confidence            47899999999999985 56666765544444445566653

2 hypothetical protein; Provisional

>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant

Probab=93.19  E-value=0.22  Score=56.96  Aligned_cols=54  Identities=11%  Similarity=0.087  Sum_probs=38.5

Q ss_pred             cchHHHHHHHH----hCCCcEEEEcCCCHhhHHHHHHHcCccC-CCCeEEEeecCCCCC
Q psy78           349 PQTEGVIKELK----DARVKVVMITGDNIQTAISVAKECGIID-PGETVVDVSAVPGGL  402 (523)
Q Consensus       349 ~~t~~aI~~Lk----~~Gi~vvi~TGr~~~~a~~ia~~lgi~~-~~~~~i~~ng~~~~~  402 (523)
                      +..++.++.++    ...+.++++|||+...+..+.++.|+.. .-+.+|+..|..++.
T Consensus       787 ~~l~~~~~~~~~~~~~~~igfv~aTGR~l~~~~~~l~~~~lp~~~PD~lI~~vGTeIyy  845 (1050)
T TIGR02468       787 QIIKNIFEAVRKERMEGSSGFILSTSMTISEIQSFLKSGGLNPTDFDALICNSGSELYY  845 (1050)
T ss_pred             HHHHHHHHHHhccccCCceEEEEEcCCCHHHHHHHHHhCCCCCCCCCEEEeCCCcceec
Confidence            33344455565    2347899999999999999999999963 345667777766544

Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=93.09  E-value=0.83  Score=44.92  Aligned_cols=48  Identities=17%  Similarity=0.317  Sum_probs=36.7

Q ss_pred             eeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH---HHHHcCcc
Q psy78           339 GLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS---VAKECGII  386 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~---ia~~lgi~  386 (523)
                      |++.-.+..-+++.++|++|+++|++++++||++..+...   -.+.+|++
T Consensus        11 Gtl~~~~~~~~ga~e~l~~L~~~g~~~~~~Tnns~~~~~~~~~~l~~~G~~   61 (279)
T TIGR01452        11 GVLWLGERVVPGAPELLDRLARAGKAALFVTNNSTKSRAEYALKFARLGFN   61 (279)
T ss_pred             CceEcCCeeCcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            4555566777889999999999999999999987655444   34556764

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=92.98  E-value=0.078  Score=61.10  Aligned_cols=61  Identities=20%  Similarity=0.262  Sum_probs=58.2

Q ss_pred             hHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCc
Q psy78           186 LWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGS  265 (523)
Q Consensus       186 ~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~  265 (523)
                      +..++..++++++++||||||++++++++.++.+|+|+                           ++++|+++++|.+|+
T Consensus       236 ~~~~~~~~i~l~v~~iP~~Lp~~vti~l~~~~~~m~~~---------------------------~ilvk~~~~iE~lg~  288 (917)
T TIGR01116       236 AIYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAKK---------------------------NAIVRKLPSVETLGC  288 (917)
T ss_pred             HHHHHHHHHhhhhhccccccHHHHHHHHHHHHHHHHHC---------------------------CcEecCcHHHHhccC
Confidence            45667789999999999999999999999999999999                           999999999999999


Q ss_pred             eeEEeecc
Q psy78           266 INCVCFDK  273 (523)
Q Consensus       266 v~~v~fDK  273 (523)
                      ++++||||
T Consensus       289 v~~ic~DK  296 (917)
T TIGR01116       289 TTVICSDK  296 (917)
T ss_pred             ceEEEecC
Confidence            99999999

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=92.80  E-value=0.71  Score=53.85  Aligned_cols=65  Identities=15%  Similarity=0.138  Sum_probs=48.6

Q ss_pred             cchhHHHHHHHHHHhhheee-e-cCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78            40 ENYAVFSISMFQYIILAITF-S-QGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP  107 (523)
Q Consensus        40 ~nt~~Fl~s~~qyi~~~~v~-s-~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  107 (523)
                      .-|..|....+.++..++.- + ..++|+.+ ++|++++.++++.+++.++++..|  .++.+|+..+++
T Consensus       892 ~~t~~f~~~v~~q~~~~~~~R~~~~~~f~~~-~~n~~l~~~~~~~~~l~~~~~~~p--~~~~~f~~~~l~  958 (997)
T TIGR01106       892 CHTAFFVSIVVVQWADLIICKTRRNSVFQQG-MKNKILIFGLFEETALAAFLSYCP--GMGVALRMYPLK  958 (997)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccCcccccccC-CcCHHHHHHHHHHHHHHHHHHHhh--hhHHHhccccCC
Confidence            45778888888777776643 2 34568888 799999999888888877766644  467889987766

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=92.75  E-value=0.82  Score=40.48  Aligned_cols=35  Identities=17%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHH
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISV  379 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~i  379 (523)
                      |..++++.+..++++++|++++=+|+|+...+...
T Consensus        26 d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~T   60 (157)
T PF08235_consen   26 DWTHPGAAELYRKIADNGYKILYLTARPIGQANRT   60 (157)
T ss_pred             hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHH
Confidence            68899999999999999999999999997765543

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=92.38  E-value=0.63  Score=43.84  Aligned_cols=39  Identities=5%  Similarity=0.198  Sum_probs=33.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.+++.++|+.|   ++++.++|+.+...+....+.+|+.
T Consensus        87 ~~~~~gv~~~L~~L---~~~~~ivTn~~~~~~~~~l~~~~l~  125 (221)
T PRK10563         87 LEPIAGANALLESI---TVPMCVVSNGPVSKMQHSLGKTGML  125 (221)
T ss_pred             CCcCCCHHHHHHHc---CCCEEEEeCCcHHHHHHHHHhcChH
Confidence            45678999999998   4999999999888888888888875

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=92.19  E-value=0.18  Score=41.27  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             eeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH---HHHHcCccC
Q psy78           338 LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS---VAKECGIID  387 (523)
Q Consensus       338 lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~---ia~~lgi~~  387 (523)
                      =|++...+++-|++.++|++|+++|.+++++|-.+..+...   -.+.+|+.-
T Consensus         6 dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~   58 (101)
T PF13344_consen    6 DGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPV   58 (101)
T ss_dssp             TTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT-
T ss_pred             ccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCC
Confidence            46666778899999999999999999999999776555433   346678764

...

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=92.10  E-value=1.2  Score=43.29  Aligned_cols=159  Identities=11%  Similarity=0.057  Sum_probs=80.7

Q ss_pred             cCCCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEE--ecCcc---hh
Q psy78           345 NRLKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFT--VSGVS---AI  418 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~--~~~~~---~~  418 (523)
                      ..+.++..++|++|..+ ...++|+|||+.........-.+     -.++..||.........-....  .....   .+
T Consensus        39 a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~~l~~~~~v~~-----i~l~aehGa~~r~~~g~~~~~~~~~~~~~~~~~v  113 (266)
T COG1877          39 AVPDDRLLSLLQDLASDPRNVVAIISGRSLAELERLFGVPG-----IGLIAEHGAEVRDPNGKWWINLAEEADLRWLKEV  113 (266)
T ss_pred             cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHhcCCCC-----ccEEEecceEEecCCCCeeEecCHHHHhhHHHHH
Confidence            34788999999999998 44799999999998877655322     2456666655422211111100  00000   00


Q ss_pred             hhhhhhcccCchhhhhccCCCceEEEEe----cccHH---HHHh---hCcch-HhhhhcccEEEEcCChHhHHHHHHHHH
Q psy78           419 QTKAKKLNYSKTEEELGLSSGAYKFAVT----GKSWE---LIRD---QMPEL-IPRIIVKGAIFARMSSDQKQQLVLELQ  487 (523)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~----~~~~~---~l~~---~~~~~-~~~~~~~~~v~~~~~p~~K~~~i~~L~  487 (523)
                      ....+........  ...+.....+...    .++..   .+..   ..... ..-...+..+.++.+-.+|+.+++.+.
T Consensus       114 ~~~l~~~v~r~pG--s~iE~K~~a~~~Hyr~a~~~~~~~~a~~~~~~~~~~~~~~v~~gk~vVEvrp~~~~KG~a~~~i~  191 (266)
T COG1877         114 AAILEYYVERTPG--SYIERKGFAVALHYRNAEDDEGAALALAEAATLINELKLRVTPGKMVVELRPPGVSKGAAIKYIM  191 (266)
T ss_pred             HHHHHHHhhcCCC--eEEEEcCcEEEEeeccCCchhhHHHHHHHHHhccccccEEEEeCceEEEEeeCCcchHHHHHHHH
Confidence            0000000000000  0011111111111    01100   0000   00001 111122344556666668999999888


Q ss_pred             HC----CCEEEEEcCChhhHHHHHhCC
Q psy78           488 QL----GYYVAMCGDGANDCGALRAAH  510 (523)
Q Consensus       488 ~~----~~~V~a~GDG~ND~~MLk~A~  510 (523)
                      +.    +..+++.||-.-|-.|++..+
T Consensus       192 ~~~~~~~~~~~~aGDD~TDE~~F~~v~  218 (266)
T COG1877         192 DELPFDGRFPIFAGDDLTDEDAFAAVN  218 (266)
T ss_pred             hcCCCCCCcceecCCCCccHHHHHhhc
Confidence            86    335899999999999999987

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=91.76  E-value=0.44  Score=45.11  Aligned_cols=42  Identities=14%  Similarity=0.246  Sum_probs=39.3

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.|++.+.++.|+++|+.+.++|+.+...+..+.+.+|+.
T Consensus        85 ~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~  126 (221)
T COG0637          85 LKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL  126 (221)
T ss_pred             CCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh
Confidence            468899999999999999999999999999999999999986

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=91.62  E-value=1  Score=40.51  Aligned_cols=43  Identities=26%  Similarity=0.377  Sum_probs=36.3

Q ss_pred             ccCCCcchHHHHHHHHhCCCc--EEEEcCC-------CHhhHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVK--VVMITGD-------NIQTAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~--vvi~TGr-------~~~~a~~ia~~lgi~  386 (523)
                      ++++.++..+.+++|++.+..  ++|+|--       ....|..+.+.+|+.
T Consensus        57 ~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~a~~~~~~lgIp  108 (168)
T PF09419_consen   57 EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGERAEALEKALGIP  108 (168)
T ss_pred             cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHHHHHHHHhhCCc
Confidence            567889999999999999874  9999975       367788899999974

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=91.54  E-value=0.68  Score=53.67  Aligned_cols=66  Identities=17%  Similarity=0.170  Sum_probs=44.7

Q ss_pred             CCccchhHHHHHHHHHHhhheee---ecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78            37 SCYENYAVFSISMFQYIILAITF---SQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP  107 (523)
Q Consensus        37 ~~~~nt~~Fl~s~~qyi~~~~v~---s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  107 (523)
                      ....+|..|..-.|.++...+.-   +.+.+|+ ++++|++|+.++++.+++.+.++    ++++..|++.+++
T Consensus       846 ~~~~~t~~f~~~v~~~~~~~~~~r~~~~~~~~~-~~~~n~~~~~~~~~~~~l~~~~~----~~~~~~f~~~~l~  914 (941)
T TIGR01517       846 QGELNTIVFNTFVLLQLFNEINARKLYERNVFE-GLFKNRIFVTIMGFTFGFQVIIV----EFGGSFFSTVSLS  914 (941)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHccCCcccccc-cccccHHHHHHHHHHHHHHHHHH----HHHHHHhcccCCC
Confidence            46678999977666666655443   2234565 88999998888877777664433    2567888887654

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=91.01  E-value=0.51  Score=46.16  Aligned_cols=51  Identities=16%  Similarity=0.137  Sum_probs=41.1

Q ss_pred             CcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78           348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP  399 (523)
Q Consensus       348 r~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~  399 (523)
                      .|++.++|++|+++|+++.++|+.+...+....+.+|+...- .++..+|..
T Consensus       150 dp~V~EtL~eLkekGikLaIvTNg~Re~v~~~Le~lgL~~yF-DvII~~g~i  200 (303)
T PHA03398        150 DPFVYDSLDELKERGCVLVLWSYGNREHVVHSLKETKLEGYF-DIIICGGRK  200 (303)
T ss_pred             ChhHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHcCCCccc-cEEEECCCc
Confidence            399999999999999999999988888888999999996432 244455443

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=90.66  E-value=0.72  Score=53.20  Aligned_cols=69  Identities=16%  Similarity=0.366  Sum_probs=55.2

Q ss_pred             cCCccchhHHHHHHHHHHhhheeeecCCCcccc-cccchhHHHHHHHHHHHhhheeecCchHHHHhccccC
Q psy78            36 YSCYENYAVFSISMFQYIILAITFSQGKPYRTP-IYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRF  105 (523)
Q Consensus        36 ~~~~~nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~-~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  105 (523)
                      .....+++.+.++.+|.+.++.+.+.++||++. +++|+++..++++..++.+...+.|.... ..|+..+
T Consensus       816 ~~~~~t~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~l~l~~~~~~~~~~-~~f~~~~  885 (917)
T COG0474         816 QALLQTTAFTVLVLIQLLLTLAVRSRGRPFLSSLLFSNKYLWLALLVIIILQLLIIFLPPLNL-KIFQPTP  885 (917)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchhhcccccCHHHHHHHHHHHHHHHHHHHhHHhHh-hhccCCC
Confidence            455677777888888999999999999999988 59999999999999999888777665432 4555543

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=90.14  E-value=1  Score=51.63  Aligned_cols=76  Identities=12%  Similarity=0.141  Sum_probs=51.5

Q ss_pred             chhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHHHHH
Q psy78            41 NYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAI  120 (523)
Q Consensus        41 nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~~~~  120 (523)
                      .|..|+...+-++...+..-..   |.|+|+|+++...+++.+++.+..+..|.-+++.+|.+.++|. .+...++.+.+
T Consensus       772 ~t~~f~~~~~~~~~~~~~~R~~---~~~~~~n~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~~-~~~~~~~~~~~  847 (867)
T TIGR01524       772 QSGWFVVGLLSQTLVVHMIRTE---KIPFIQSRAAAPVMIATLLVMALGIIIPFSPLGHSIGLVSLPL-SYFPWLIAILV  847 (867)
T ss_pred             HHHHHHHHHHHHHHHHHhhCcC---CCCcCcchHHHHHHHHHHHHHHHHHHhchhhhhhhhccccCCc-cHHHHHHHHHH
Confidence            4667887777666665544322   3477889999988888888887777666645678899887763 44444444433

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=90.01  E-value=1.8  Score=41.93  Aligned_cols=31  Identities=19%  Similarity=0.262  Sum_probs=27.2

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQ  374 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~  374 (523)
                      +.+.-|++.+..+.++++|++|+++|||...
T Consensus       143 ~ApAlp~al~ly~~l~~~G~kIf~VSgR~e~  173 (275)
T TIGR01680       143 EAPALPETLKNYNKLVSLGFKIIFLSGRLKD  173 (275)
T ss_pred             cCCCChHHHHHHHHHHHCCCEEEEEeCCchh
Confidence            3456789999999999999999999999864

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=89.77  E-value=0.22  Score=58.08  Aligned_cols=60  Identities=20%  Similarity=0.366  Sum_probs=57.8

Q ss_pred             HHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCCce
Q psy78           187 WDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSGSI  266 (523)
Q Consensus       187 ~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~~v  266 (523)
                      .+.+.++++++|+++|+|||+++|++++.|++||+|+                           ++++|+..++|.+|.+
T Consensus       307 ~~~~~~av~l~Va~VPegLp~~vti~La~g~~rMak~---------------------------~~lVr~L~avEtLG~v  359 (1053)
T TIGR01523       307 KEVAIYAICLAISIIPESLIAVLSITMAMGAANMSKR---------------------------NVIVRKLDALEALGAV  359 (1053)
T ss_pred             HHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhc---------------------------CCEeccchhhhhccCc
Confidence            4677889999999999999999999999999999999                           9999999999999999


Q ss_pred             eEEeecc
Q psy78           267 NCVCFDK  273 (523)
Q Consensus       267 ~~v~fDK  273 (523)
                      +++|+||
T Consensus       360 tvICsDK  366 (1053)
T TIGR01523       360 NDICSDK  366 (1053)
T ss_pred             cEEEecC
Confidence            9999999

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=88.68  E-value=3.1  Score=37.85  Aligned_cols=35  Identities=20%  Similarity=0.119  Sum_probs=28.6

Q ss_pred             hHHHHHHHHHHC---CCEEEEEcCChhhHHHHHhCCcc
Q psy78           478 QKQQLVLELQQL---GYYVAMCGDGANDCGALRAAHAG  512 (523)
Q Consensus       478 ~K~~~i~~L~~~---~~~V~a~GDG~ND~~MLk~A~vG  512 (523)
                      ..+.+.+.+.++   .....++||...|+.+=..||++
T Consensus       107 ~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi~  144 (181)
T COG0241         107 KPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGIK  144 (181)
T ss_pred             ChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCCC
Confidence            457777777776   47789999999999998888876

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=87.89  E-value=2.1  Score=38.51  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=31.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEc-CCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMIT-GDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~T-Gr~~~~a~~ia~~lgi~  386 (523)
                      .+-|++.++|+.|+++|+++.+|| -+.+..|+.+.+.+++.
T Consensus        45 ~lypdv~~iL~~L~~~gv~lavASRt~~P~~A~~~L~~l~i~   86 (169)
T PF12689_consen   45 SLYPDVPEILQELKERGVKLAVASRTDEPDWARELLKLLEID   86 (169)
T ss_dssp             ---TTHHHHHHHHHHCT--EEEEE--S-HHHHHHHHHHTT-C
T ss_pred             EeCcCHHHHHHHHHHCCCEEEEEECCCChHHHHHHHHhcCCC
Confidence            367999999999999999999999 46788999999999986

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=87.54  E-value=3.2  Score=39.63  Aligned_cols=30  Identities=10%  Similarity=-0.036  Sum_probs=24.5

Q ss_pred             CCCEEEEEcCC-hhhHHHHHhCCccEEeccc
Q psy78           489 LGYYVAMCGDG-ANDCGALRAAHAGISLSEA  518 (523)
Q Consensus       489 ~~~~V~a~GDG-~ND~~MLk~A~vGIAMgna  518 (523)
                      ..+++++|||+ ..|+.+=+.||+-.+..+.
T Consensus       179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~  209 (238)
T PRK10748        179 PIGEILHVGDDLTTDVAGAIRCGMQACWINP  209 (238)
T ss_pred             ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence            36789999999 6999999999987665553

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=86.66  E-value=11  Score=43.43  Aligned_cols=48  Identities=13%  Similarity=0.216  Sum_probs=35.9

Q ss_pred             CCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78           347 LKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP  399 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~  399 (523)
                      +.+++.++|++|.+. +..|+|+|||+..........+++     .++..||..
T Consensus       623 p~p~l~~~L~~L~~dp~n~VaIVSGR~~~~Le~~fg~~~L-----~LaAEHG~~  671 (934)
T PLN03064        623 LHPELKEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDM-----WLAAENGMF  671 (934)
T ss_pred             CCHHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhCCCCc-----eEEeeCCeE
Confidence            557889999999876 678999999999988776654432     345555544

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=86.57  E-value=1.8  Score=38.73  Aligned_cols=39  Identities=18%  Similarity=0.160  Sum_probs=29.1

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHH----HHHHHcCc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAI----SVAKECGI  385 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~----~ia~~lgi  385 (523)
                      +++-+++.|..=++.|=.++.+|||.+....    .+++...|
T Consensus       115 PKevA~qLI~MHq~RGD~i~FvTGRt~gk~d~vsk~Lak~F~i  157 (237)
T COG3700         115 PKEVARQLIDMHQRRGDAIYFVTGRTPGKTDTVSKTLAKNFHI  157 (237)
T ss_pred             hHHHHHHHHHHHHhcCCeEEEEecCCCCcccccchhHHhhccc
Confidence            4566788888889999999999999876443    44444445

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=86.29  E-value=14  Score=42.18  Aligned_cols=48  Identities=15%  Similarity=0.139  Sum_probs=35.6

Q ss_pred             CCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCC
Q psy78           347 LKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP  399 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~  399 (523)
                      +.++..++|++|.+. +..|+|+|||+..........++     -.++..||..
T Consensus       533 p~~~l~~~L~~L~~d~~~~V~IvSGR~~~~L~~~~~~~~-----l~l~aeHG~~  581 (797)
T PLN03063        533 LHPELKETLKALCSDPKTTVVVLSRSGKDILDKNFGEYN-----IWLAAENGMF  581 (797)
T ss_pred             CCHHHHHHHHHHHcCCCCEEEEEeCCCHHHHHHHhCCCC-----CcEEEeCCEE
Confidence            677899999999876 77899999999998877654332     2345555544

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=85.89  E-value=2.9  Score=48.25  Aligned_cols=76  Identities=13%  Similarity=0.175  Sum_probs=52.1

Q ss_pred             hhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHHHHHHH
Q psy78            42 YAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVIYLAIC  121 (523)
Q Consensus        42 t~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~~~~~~  121 (523)
                      |+.|....+-++...+..=.   .|.|+++|++....+++.+++.+..+..|.++++.+|++.++|. .+...++++.+.
T Consensus       808 ~~~F~~~~~~q~~~~~~~R~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~-~~~~~~~~~~~~  883 (902)
T PRK10517        808 SGWFVVGLLSQTLIVHMIRT---RRIPFIQSRAAWPLMIMTLIVMAVGIALPFSPLASYLQLQALPL-SYFPWLVAILAG  883 (902)
T ss_pred             HHHHHHHHHHHHHHHHhhcc---CCCCcccchHHHHHHHHHHHHHHHHHHhhHHHHHHhhCCcCCCh-hHHHHHHHHHHH
Confidence            45577776666655543322   14488999999888888888888777778778889999988773 454444444443

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=84.42  E-value=5.3  Score=37.51  Aligned_cols=43  Identities=19%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      .-+..+++.+++++++++ +++.++|--.........+++|+..
T Consensus        97 ~~~~~~~~~~~L~~l~~~-~~l~ilTNg~~~~~~~~l~~~gl~~  139 (229)
T COG1011          97 LLPDYPEALEALKELGKK-YKLGILTNGARPHQERKLRQLGLLD  139 (229)
T ss_pred             hCccChhHHHHHHHHHhh-ccEEEEeCCChHHHHHHHHHcCChh
Confidence            346789999999999999 9999999877777888899999753

>KOG4383|consensus

Probab=84.22  E-value=2.2  Score=45.80  Aligned_cols=55  Identities=20%  Similarity=0.259  Sum_probs=51.1

Q ss_pred             ccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       333 ~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++-.|.|++.++-+.+.+....|+.|-++-|+.+-.|-.+....+-+|+++|+..
T Consensus       813 sGQIf~GlVs~~Yea~ldiVriIdgL~naCiRfVYFS~EdELkSkVFAEKlGiEa  867 (1354)
T KOG4383|consen  813 SGQIFCGLVSLHYEAILDIVRIIDGLDNACIRFVYFSKEDELKSKVFAEKLGIEA  867 (1354)
T ss_pred             ccchhhhhhhhhccchhhHHHHHHHhhhhheeeeeecchHHHHHHHHHHHhcccc
Confidence            5667899999999999999999999999999999999999999999999999964

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=82.46  E-value=2.5  Score=40.41  Aligned_cols=54  Identities=15%  Similarity=0.247  Sum_probs=41.6

Q ss_pred             eeeeeccCCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHH-cCccCCCCeE
Q psy78           339 GLIILENRLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKE-CGIIDPGETV  392 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~-lgi~~~~~~~  392 (523)
                      |++.-.+.+-+++.++|+.++++|++++++|   ||+.........+ +|+....+.+
T Consensus         7 GvL~~~~~~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~~~l~~~~g~~~~~~~i   64 (236)
T TIGR01460         7 GVLWLGHKPIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYAEKLSSLLGVDVSPDQI   64 (236)
T ss_pred             CccCcCCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHhcCCCCCHHHe
Confidence            5555566777899999999999999999998   8888877666666 7875433333

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=81.39  E-value=4.6  Score=43.30  Aligned_cols=39  Identities=18%  Similarity=0.324  Sum_probs=30.9

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCH------------hhHHHHHHHcCc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNI------------QTAISVAKECGI  385 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~------------~~a~~ia~~lgi  385 (523)
                      +-|++.++|++|+++|++++|+|.-+.            ..+..+.+++|+
T Consensus       198 l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~~G~~~~~~~~~ki~~iL~~lgi  248 (526)
T TIGR01663       198 IFPEIPEKLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGV  248 (526)
T ss_pred             cccCHHHHHHHHHHCCCEEEEEECCcccccCcccHHHHHHHHHHHHHHcCC
Confidence            469999999999999999999997544            235566666665

Note that the EC number for the kinase function is: 2.7.1.78

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=80.43  E-value=5.5  Score=46.00  Aligned_cols=64  Identities=9%  Similarity=0.123  Sum_probs=43.5

Q ss_pred             chhHHHHHHHHHHhhheeeecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78            41 NYAVFSISMFQYIILAITFSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP  107 (523)
Q Consensus        41 nt~~Fl~s~~qyi~~~~v~s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  107 (523)
                      .|..|....+-++...+..=..   |.|+++|++....+++.+++.+..+..|..+++.+|++.++|
T Consensus       807 ~t~~f~~l~~~q~~~~~~~R~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~f~~~~l~  870 (903)
T PRK15122        807 QSGWFIEGLLSQTLVVHMLRTQ---KIPFIQSTAALPVLLTTGLIMAIGIYIPFSPLGAMVGLEPLP  870 (903)
T ss_pred             HHHHHHHHHHHHHHHHHhhCcC---CCCcCcchHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCCCC
Confidence            4667888777776665544222   347788988777676666666666656655678899988776

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=80.14  E-value=7.4  Score=44.95  Aligned_cols=66  Identities=9%  Similarity=0.116  Sum_probs=47.4

Q ss_pred             cchhHHHHHHHHHHhhheeeec--CCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78            40 ENYAVFSISMFQYIILAITFSQ--GKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP  107 (523)
Q Consensus        40 ~nt~~Fl~s~~qyi~~~~v~s~--G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  107 (523)
                      ..|..|..-.+.++...+..-.  ...|+..+++|++|...+++.+++.+.++..  |.++.+|+..+++
T Consensus       788 ~~t~~f~~~v~~q~~~~~~~r~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~--p~~~~~f~~~~l~  855 (884)
T TIGR01522       788 DTTMTFTCFVFFDMFNALACRSQTKSVFEIGFFSNRMFNYAVGGSIIGQLLVIYF--PPLQSVFQTEALS  855 (884)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCccccccCcccCHHHHHHHHHHHHHHHHHHHH--HHHHHHHcCCCCC
Confidence            4578888888877777666532  3448878899999988888877776655543  4567889887654

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	523
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	2e-29
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	3e-29
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	3e-27
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	4e-26
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	5e-25
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	1e-10
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	2e-05
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	2e-10
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	7e-07
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	5e-10
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	2e-04
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	1e-09
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	4e-06
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	1e-09
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	6e-04
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	4e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
3gwi_A	170	Magnesium-transporting ATPase, P-type 1; P-type AT	1e-05
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	3e-05

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score =  122 bits (308), Expect = 2e-29
 Identities = 52/230 (22%), Positives = 86/230 (37%), Gaps = 38/230 (16%)

Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKH---LNYMKREDIEKDLEFLGLIILENRL 347
           E   +   E    G RV+      L  + Y      +  +      DL F+GL+ + +  
Sbjct: 541 EAFQNAYLELGGLGERVLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPP 600

Query: 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
           +      + + + A +KV+M+TGD+  TA ++AK  GII  G   ++  A          
Sbjct: 601 RAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVGIISEGNETIEDIAARLN------ 654

Query: 408 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIR---DQMPELIPRI 464
                                           A    V G   +L     + + +++   
Sbjct: 655 ----------------------IPIGQVNPRDAKACVVHGS--DLKDLSTEVLDDILHY- 689

Query: 465 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 514
                +FAR S  QK  +V   Q+ G  VA+ GDG ND  AL+ A  G++
Sbjct: 690 -HTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVA 738

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score =  121 bits (307), Expect = 3e-29
 Identities = 51/230 (22%), Positives = 84/230 (36%), Gaps = 38/230 (16%)

Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKH---LNYMKREDIEKDLEFLGLIILENRL 347
           E   +        G RV+      LS +DY      +          L F GL+ + +  
Sbjct: 546 EAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPP 605

Query: 348 KPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPK 407
           +      + + + A ++V+M+TGD+  TA ++A   GII  G                  
Sbjct: 606 RATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVGIISEGS----------------- 648

Query: 408 VYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIR---DQMPELIPRI 464
                      +T        +   +      A    + G   +L      ++ E +   
Sbjct: 649 -----------ETVEDIAARLRVPVDQVNRKDARACVINGM--QLKDMDPSELVEALRTH 695

Query: 465 IVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 514
                +FAR S  QK  +V   Q+LG  VA+ GDG ND  AL+ A  G++
Sbjct: 696 --PEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVA 743

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score =  115 bits (290), Expect = 3e-27
 Identities = 46/226 (20%), Positives = 84/226 (37%), Gaps = 60/226 (26%)

Query: 289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK 348
           + + ++S++ +Y E+G R +A+A         + +    +E      EF+GL+ L +  +
Sbjct: 439 LSKKVLSIIDKYAERGLRSLAVA--------RQVVPEKTKESPGAPWEFVGLLPLFDPPR 490

Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
             +   I+   +  V V MITGD +       +  G+   G  +   SA+ G        
Sbjct: 491 HDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGM---GTNMYPSSALLGT------- 540

Query: 409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 468
                            + +     +                             +I K 
Sbjct: 541 ---------------HKDANLASIPVE---------------------------ELIEKA 558

Query: 469 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGIS 514
             FA +  + K ++V +LQ+  + V M GDG ND  AL+ A  GI+
Sbjct: 559 DGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIA 604

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score =  111 bits (281), Expect = 4e-26
 Identities = 63/232 (27%), Positives = 92/232 (39%), Gaps = 65/232 (28%)

Query: 291 ENIVSVLSEYT--EQGYRVIALASRTLS--IEDYKHLNYMKREDIEKDLEFLGLIILENR 346
           E I+SV+ E+       R +ALA+R      E+    +  +  + E DL F+G++ +   
Sbjct: 544 EKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGM--- 600

Query: 347 LKPQTEGV---IKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLK 403
           L P  + V   I+  +DA ++V+MITGDN  TAI++ +  GI    E V D         
Sbjct: 601 LDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVADR-------- 652

Query: 404 ECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMP--ELI 461
                                                   A TG+  E   D +P  E  
Sbjct: 653 ----------------------------------------AYTGR--EF--DDLPLAEQR 668

Query: 462 PRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
                +   FAR+    K ++V  LQ      AM GDG ND  AL+ A  GI
Sbjct: 669 -EACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGI 719

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score =  108 bits (272), Expect = 5e-25
 Identities = 42/228 (18%), Positives = 77/228 (33%), Gaps = 69/228 (30%)

Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQ 350
           +   + ++E+  +G+R + +A                R+  E   E LG++   +  +  
Sbjct: 496 QAYKNKVAEFATRGFRSLGVA----------------RKRGEGSWEILGIMPCMDPPRHD 539

Query: 351 TEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF 410
           T   + E K   + + M+TGD +  A   +++ G+   G  + +   +  G         
Sbjct: 540 TYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGL---GTNIYNAERLGLGGGG------ 590

Query: 411 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI 470
                                 E+                              +     
Sbjct: 591 -----------------DMPGSEVY---------------------------DFVEAADG 606

Query: 471 FARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
           FA +    K  +V  LQQ GY VAM GDG ND  +L+ A  GI++  +
Sbjct: 607 FAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKADTGIAVEGS 654

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* Length = 280

 Score = 61.3 bits (150), Expect = 1e-10
 Identities = 20/52 (38%), Positives = 33/52 (63%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
           + E  G+I L +R++P++   I +LK   +K +M+TGDN   A  VA+E G+
Sbjct: 132 NGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGL 183

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A* Length = 280

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
            +K + V E+QQ  Y  AM GDG ND  AL  A  GI
Sbjct: 193 HEKAEKVKEVQQ-KYVTAMVGDGVNDAPALAQADVGI 228

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A* Length = 263

 Score = 60.5 bits (148), Expect = 2e-10
 Identities = 10/52 (19%), Positives = 28/52 (53%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
           + E +    + +  +P  +  +++LK+  +K+++++GD       ++KE  I
Sbjct: 124 NGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNI 175

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A* Length = 263

 Score = 49.8 bits (120), Expect = 7e-07
 Identities = 15/44 (34%), Positives = 25/44 (56%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
            ++ +S + K +++ +L+Q G  V M GDG ND  AL  A   +
Sbjct: 178 YYSNLSPEDKVRIIEKLKQNGNKVLMIGDGVNDAAALALADVSV 221

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Length = 287

 Score = 59.4 bits (145), Expect = 5e-10
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
           +    G+I + + LK   +  ++ELK   +KV MITGDN ++A ++++E  +
Sbjct: 151 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 202

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I Length = 287

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
            QK + V +LQ     VA  GDG ND  AL  A  GI
Sbjct: 212 HQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 247

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736

 Score = 59.9 bits (146), Expect = 1e-09
 Identities = 19/52 (36%), Positives = 35/52 (67%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
           D + + L+++E+ +K  T   I EL+ + +++VM+TGD+ +TA +VA   GI
Sbjct: 542 DGKTVALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGI 593

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736

 Score = 48.7 bits (117), Expect = 4e-06
 Identities = 19/44 (43%), Positives = 25/44 (56%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
           + A +  + K ++V EL+  G  VAM GDG ND  AL  A  GI
Sbjct: 596 VVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKADIGI 639

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
           +    G+I + + LK   +  ++ELK   +KV MITGDN ++A ++++E  +
Sbjct: 445 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 496

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645

 Score = 41.7 bits (99), Expect = 6e-04
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 470 IFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
           + A +   QK + V +LQ     VA  GDG ND  AL  A  GI
Sbjct: 499 VIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGI 541

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723

 Score = 58.3 bits (142), Expect = 4e-09
 Identities = 17/52 (32%), Positives = 32/52 (61%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGI 385
           +    G+I + + LK   +  ++ELK   +KV MITGDN ++A ++++E  +
Sbjct: 523 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL 574

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 3e-08
 Identities = 32/214 (14%), Positives = 66/214 (30%), Gaps = 35/214 (16%)

Query: 150 KS------CKYIGIENELDSNYMWPKLSSDPEPNYEILRGRSLWDIVIKSLDI-ITIVIP 202
           K+      C    ++ ++D    W  L +   P   +   + L   +  +          
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222

Query: 203 PALPATMTVGKLYALTRLKKYNISCI------NSRVINLMTVG-KLYALTRLKKYNISCI 255
             L       +L  L + K Y    +      N++  N   +  K+   TR         
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR--------- 273

Query: 256 NSRVINVSGSINCVCFDKMFESTGWTLEEPM----KFVPENIVSVLSEYTEQGY-RVIAL 310
             +V +   +           S   T +E      K++ +     L         R +++
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCRPQDLPREVLTTNPRRLSI 332

Query: 311 ASRTLS-----IEDYKHLNYMKRED-IEKDLEFL 338
            + ++       +++KH+N  K    IE  L  L
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 53/412 (12%), Positives = 107/412 (25%), Gaps = 124/412 (30%)

Query: 97  IIQFLQLRFPPNM------QFPLIVIYLAICNFVLSLFIENFIIHYLLMIKFKRWSNDYK 150
           I+   +  F  N         P  ++     + ++           L      +     +
Sbjct: 21  ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80

Query: 151 SCKYIGIENELDSNYMW--------PKLSSDPEPNYEILRGRSLWDIVIKSLDIITIVIP 202
                 +E  L  NY +         +  S     Y   R R L++           V  
Sbjct: 81  KF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR-LYNDNQ--------VFA 127

Query: 203 PALPATMTVGKLYALTRLKK--YNISCINSRVINLMT-VGKLYALTRLKKYNISCINSRV 259
                   V +L    +L++    +    + +I+ +   GK            + +   V
Sbjct: 128 K-----YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK------------TWVALDV 170

Query: 260 INVSGSINCVCFDKMFESTGWTLEEPMKF----VPENIVSVL--------SEYTEQGYRV 307
              S  + C    K+F    W     +       PE ++ +L          +T +    
Sbjct: 171 CL-SYKVQCKMDFKIF----W-----LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220

Query: 308 IALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVM 367
             +  R  SI+       +K +  E       L++L N    Q         +   K+++
Sbjct: 221 SNIKLRIHSIQAEL-RRLLKSKPYEN-----CLLVLLN---VQNAKAWNAF-NLSCKILL 270

Query: 368 ITGD-NIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLN 426
            T    +   +S A          T + +      L                        
Sbjct: 271 TTRFKQVTDFLSAAT--------TTHISLDHHSMTLTP---------------------- 300

Query: 427 YSKTEEELGLSSGAYKFA-VTGKSWELIRDQMPELIPRIIVKGAIFARMSSD 477
               +E   L               + +  ++    PR +   +I A    D
Sbjct: 301 ----DEVKSL------LLKYLDCRPQDLPREVLTTNPRRL---SIIAESIRD 339

>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli} Length = 170

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLI 341
             I  V      QG RV+A+A++ L   +  +     +   E DL   G I
Sbjct: 115 RKIKRVTDTLNRQGLRVVAVATKYLPAREGDY-----QRADESDLILEGYI 160

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A Length = 206

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 17/37 (45%), Positives = 20/37 (54%)

Query: 477 DQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
           D K+Q V+  + L Y V   GD  ND   L  AHAGI
Sbjct: 132 DPKRQSVIAFKSLYYRVIAAGDSYNDTTMLSEAHAGI 168

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	523
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	100.0
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	100.0
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	100.0
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	100.0
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	100.0
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	100.0
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	100.0
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	100.0
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	99.62
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	99.69
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	99.64
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	99.61
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	99.61
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	99.6
3dao_A	283	Putative phosphatse; structural genomics, joint ce	99.58
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	99.55
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	99.54
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	99.5
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	99.49
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	99.49
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	99.49
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	99.48
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	99.47
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	99.47
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	99.44
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	99.44
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	99.43
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	99.39
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	99.38
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	99.38
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	99.35
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	99.34
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	99.31
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	99.29
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	99.23
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	99.22
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.2
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	99.19
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	99.17
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.1
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.08
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.05
3mmz_A	176	Putative HAD family hydrolase; structural genomics	98.99
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	98.97
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	98.94
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	98.93
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	98.91
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	98.84
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	98.79
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	98.77
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	98.74
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	98.73
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	98.69
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	98.67
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	98.65
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	98.63
3fvv_A	232	Uncharacterized protein; unknown function, structu	98.62
1te2_A	226	Putative phosphatase; structural genomics, phospha	98.6
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	98.55
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	98.51
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	98.51
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	98.5
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	98.5
4gxt_A	385	A conserved functionally unknown protein; structur	98.5
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	98.49
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	98.49
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	98.48
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	98.47
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	98.46
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	98.46
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	98.43
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	98.42
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	98.42
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	98.42
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	98.4
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	98.38
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	98.33
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	98.33
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	98.31
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	98.31
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	98.3
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	98.28
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	98.25
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	98.25
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	98.25
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	98.24
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	98.23
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	98.23
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	98.23
2hsz_A	243	Novel predicted phosphatase; structural genomics,	98.22
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	98.19
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	98.16
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	98.15
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	98.14
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	98.14
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	98.12
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	98.12
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	98.12
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	98.1
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	98.09
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	98.08
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	98.07
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	98.07
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	98.06
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	98.04
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	98.03
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	98.03
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	98.03
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	98.03
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	98.0
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	98.0
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	97.99
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	97.97
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	97.92
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	97.86
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	97.86
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	97.83
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	97.83
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	97.81
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	97.78
2o2x_A	218	Hypothetical protein; structural genomics, joint c	97.75
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	97.7
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	97.56
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	97.38
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	97.28
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	97.27
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	97.27
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	97.23
3gwi_A	170	Magnesium-transporting ATPase, P-type 1; P-type AT	97.22
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	97.16
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	97.09
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.93
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	96.88
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	96.8
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	96.76
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	96.75
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	96.73
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	96.72
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	96.62
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	96.49
2zg6_A	220	Putative uncharacterized protein ST2620, probable	96.31
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	96.12
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	95.99
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	95.91
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	95.8
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	95.19
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	95.07
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	93.28
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	93.07
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	92.61
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	92.5
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	91.26
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	90.18
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	89.96
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	87.94
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	86.75
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	86.33
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	85.65
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	83.56
1svj_A	156	Potassium-transporting ATPase B chain; alpha-beta	82.65
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	80.92

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=100.00  E-value=5.5e-37  Score=349.90  Aligned_cols=309  Identities=24%  Similarity=0.297  Sum_probs=208.9

Q ss_pred             ecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehh
Q psy78           181 LRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKL  241 (523)
Q Consensus       181 ~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~  241 (523)
                      +.+.++.+++.+++++++++||||||+++|++++.|+.||+|+|++                |+++   +|+|+|+|.++
T Consensus       322 ~~~~~~~~~~~~~i~l~v~~iPe~Lp~~vti~la~~~~rmak~~~lvr~l~avE~LG~v~~IcsDKTGTLT~n~m~v~~~  401 (1034)
T 3ixz_A          322 CIGYTFLRAMVFFMAIVVAYVPEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHL  401 (1034)
T ss_pred             HhcchHHHHHHHHHHHHHheeccccHHHHHHHHHHHHHHHhhCCeEecChHHHHhhcCCcEEEcCCCCCcccCeEEEEEE
Confidence            4678899999999999999999999999999999999999999974                3444   89999999998


Q ss_pred             hhhhhcc------------------------ccceeeecCCc-------------------------------------c
Q psy78           242 YALTRLK------------------------KYNISCINSRV-------------------------------------I  260 (523)
Q Consensus       242 ~~~~~~~------------------------~~~il~~~~~~-------------------------------------~  260 (523)
                      |..+...                        ....+|.+...                                     .
T Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~lc~~a~~~~~~~~~~~~~~~~~gdp~e~All~~~~~~~~~~~~~~  481 (1034)
T 3ixz_A          402 WFDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYR  481 (1034)
T ss_pred             EECCccccccCcccccccccCcCCHHHHHHHHHHHHhccceeccCcCCCcccCceeccCchHHHHHHHHHHhCCChHHHH
Confidence            7643221                        01112211100                                     0


Q ss_pred             ccCCceeEEeecccccc--ccccccC-------------CC-------------------CcchhHHHHHHHHHhhccCe
Q psy78           261 NVSGSINCVCFDKMFES--TGWTLEE-------------PM-------------------KFVPENIVSVLSEYTEQGYR  306 (523)
Q Consensus       261 ~~~~~v~~v~fDK~~~~--~~~~~~~-------------~~-------------------~~~~~~~~~~~~~~~~~G~r  306 (523)
                      +...++..+.||...+.  +-....+             ++                   ++.++.+.+..++++++|+|
T Consensus       482 ~~~~~~~~~pF~s~rk~m~~v~~~~~~~~~~~~l~~KGApe~il~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~G~R  561 (1034)
T 3ixz_A          482 ERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGER  561 (1034)
T ss_pred             HhCcceEEeeecCCCceEEEEEEecCCCCccEEEEEeCChHHHHHHhHHhhcCCceecCCHHHHHHHHHHHHHHHhcCcH
Confidence            01122344445541110  0000000             00                   12235567788899999999


Q ss_pred             EEEEEEecCCchhHHHhhh---cchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           307 VIALASRTLSIEDYKHLNY---MKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       307 ~l~~a~k~l~~~~~~~~~~---~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      |+++|+|.++.+.......   ...+..|+|++|+|+++++|++|+++++||++|+++||+++|+|||++.++.++++++
T Consensus       562 vLa~A~~~l~~~~~~~~~~~~~~~~~~~e~~l~~lGlv~i~Dp~r~~~~~aI~~l~~aGI~vvmiTGd~~~tA~~ia~~l  641 (1034)
T 3ixz_A          562 VLGFCQLYLSEKDYPPGYAFDVEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASV  641 (1034)
T ss_pred             hheEeEEecChhhcccccccchhhhhccccCcEEEEEEeccCCCchhHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHc
Confidence            9999999987542211110   1223468999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhh
Q psy78           384 GIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPR  463 (523)
Q Consensus       384 gi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~  463 (523)
                      |+..++...+.                         .........   .............+++..+..+.+   +.+..
T Consensus       642 gi~~~~~~~i~-------------------------~~~~~~~~~---~~~~~~~~~~~~~~~g~~l~~~~~---~~l~~  690 (1034)
T 3ixz_A          642 GIISEGSETVE-------------------------DIAARLRVP---VDQVNRKDARACVINGMQLKDMDP---SELVE  690 (1034)
T ss_pred             CCCCCCchHHH-------------------------HHHHhhCcc---chhccccccceeEEecHhhhhCCH---HHHHH
Confidence            99753221100                         000000000   000001112234455554433221   12222


Q ss_pred             hhc--ccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec-ccCC
Q psy78           464 IIV--KGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS-EAES  520 (523)
Q Consensus       464 ~~~--~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg-na~~  520 (523)
                      ...  ...+++|++|++|..+++.+++.++.|+|+|||.||++||+.||+||||| ||.+
T Consensus       691 ~~~~~~~~v~ar~~P~~K~~iv~~lq~~g~~V~a~GDG~ND~~mLk~A~vGIAMg~ng~d  750 (1034)
T 3ixz_A          691 ALRTHPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSD  750 (1034)
T ss_pred             HHHhCCceEEEecCHHHHHHHHHHHHHcCCEEEEECCcHHhHHHHHHCCeeEEeCCccCH
Confidence            222  22589999999999999999999999999999999999999999999999 7654

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=100.00  E-value=8.1e-37  Score=340.43  Aligned_cols=278  Identities=22%  Similarity=0.329  Sum_probs=196.2

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~  242 (523)
                      .+.++.+++.+++++++++||||||+++|++++.|+.||+|+|++                |+++   +|+|+|+|.+.+
T Consensus       266 ~~~~~~~~~~~~v~llv~aiP~aLp~~vti~la~g~~r~ak~~ilvk~~~aiE~Lg~v~~Ic~DKTGTLT~n~m~v~~~~  345 (885)
T 3b8c_A          266 QRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNL  345 (885)
T ss_dssp             TCSCSTTHHHHHHHHTTTTCCSSTTTHHHHTTTHHHHHHTTTSCCCSSGGGHHHHTTCCCCEEECCCCCSCCCCCCCSCC
T ss_pred             ccCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCeEeCCchHHHHHhCCCEEEECCCCCcccCceEEEEEE
Confidence            345778899999999999999999999999999999999999974                3444   899999997422


Q ss_pred             --------hhhhccccceeeec---CCcc---------------ccCCceeEEeeccccccc--------c--ccc--cC
Q psy78           243 --------ALTRLKKYNISCIN---SRVI---------------NVSGSINCVCFDKMFEST--------G--WTL--EE  284 (523)
Q Consensus       243 --------~~~~~~~~~il~~~---~~~~---------------~~~~~v~~v~fDK~~~~~--------~--~~~--~~  284 (523)
                              ..+++.....+|.+   .+.+               +....++.+.||...+..        +  +..  ..
T Consensus       346 ~~~~~~~~~~~~ll~~aa~~~~~~~~~p~~~Al~~~~~~~~~~~~~~~~~~~~pF~s~~k~~sv~~~~~~g~~~~~~KGa  425 (885)
T 3b8c_A          346 VEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGA  425 (885)
T ss_dssp             CCSSCSSTTHHHHHHHHHHHCCSSSCCSHHHHHHHTTCCTTCCCCSSCCBCCCCCCTTTCCCCCBBCSSSSCBCBCCCCS
T ss_pred             EeccCCCCCHHHHHHHHHHHhCCCCCCchHHHHHHHhhchhhHhhcCceeecccCCcccceEEEEEEecCCcEEEEEeCC
Confidence                    11122111112211   1100               111233444555411100        0  000  11


Q ss_pred             CC---------CcchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCcchHHHH
Q psy78           285 PM---------KFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKPQTEGVI  355 (523)
Q Consensus       285 ~~---------~~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI  355 (523)
                      ++         ...++.+.+.+++++++|+|++++|+++++.+        .++..|+|++++|+++++|++||+++++|
T Consensus       426 ~e~il~~c~~~~~~~~~~~~~~~~~a~~G~rvl~vA~~~~~~~--------~~~~~e~~l~~lGli~i~Dp~R~~a~~aI  497 (885)
T 3b8c_A          426 PEQILELAKASNDLSKKVLSIIDKYAERGLRSLAVARQVVPEK--------TKESPGAPWEFVGLLPLFDPPRHDSAETI  497 (885)
T ss_dssp             GGGTSSSSCCCSTTTTTHHHHHHHHTTTTCEEEEECCBCCCSS--------SSSCCCCCCCCCEEEEECCCCCHHHHHHH
T ss_pred             HHHHHHhccCchhhHHHHHHHHHHHHhCCCeEEEEEEeccccc--------cccccccCcEEEEEEEeecccchhHHHHH
Confidence            10         13456788889999999999999999988642        13456789999999999999999999999


Q ss_pred             HHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhc
Q psy78           356 KELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELG  435 (523)
Q Consensus       356 ~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (523)
                      ++|+++||+++|+|||+..+|..+|+++|+..+..     ++        ..+     ...+...   .           
T Consensus       498 ~~l~~aGI~v~MiTGD~~~tA~~iA~~lGi~~~~~-----~~--------~~l-----~g~~~~~---~-----------  545 (885)
T 3b8c_A          498 RRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMY-----PS--------SAL-----LGTHKDA---N-----------  545 (885)
T ss_dssp             HHHHHTTCCCEEEESSCHHHHTHHHHTTTCTTCCS-----TT--------SSC-----CBGGGGT---T-----------
T ss_pred             HHHHHcCCcEEEEcCCChHHHHHHHHHhCCccccC-----Cc--------cee-----ecccccc---c-----------
Confidence            99999999999999999999999999999963100     00        000     0000000   0           


Q ss_pred             cCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEe
Q psy78           436 LSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISL  515 (523)
Q Consensus       436 ~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAM  515 (523)
                               +++.+           +.+...+..++++++|+||..+++.+++.++.|+|+|||.||+|||+.||+||||
T Consensus       546 ---------~~~~~-----------l~~~~~~~~v~arv~P~~K~~iV~~lq~~g~~Vam~GDGvNDapaLk~AdvGIAm  605 (885)
T 3b8c_A          546 ---------LASIP-----------VEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAV  605 (885)
T ss_dssp             ---------SCCSC-----------HHHHHHTSCCEECCCHHHHHHHHHHHHHTTCCCCBCCCSSTTHHHHHHSSSCCCC
T ss_pred             ---------cchhH-----------HHHHHhhCcEEEEECHHHHHHHHHHHHHCCCeEEEEcCCchhHHHHHhCCEeEEe
Confidence                     00111           1222334468999999999999999999999999999999999999999999999


Q ss_pred             cccC
Q psy78           516 SEAE  519 (523)
Q Consensus       516 gna~  519 (523)
                      |++.
T Consensus       606 g~gt  609 (885)
T 3b8c_A          606 ADAT  609 (885)
T ss_dssp             SSSH
T ss_pred             CCcc
Confidence            9864

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=100.00  E-value=1.5e-36  Score=338.21  Aligned_cols=269  Identities=23%  Similarity=0.311  Sum_probs=191.7

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehhh
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKLY  242 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~~  242 (523)
                      ++.++.+++.+++++++++||||||+++|++++.|+.+|+|+|++                |+++   +|+|+|+|.+++
T Consensus       315 ~~~~~~~~l~~av~llV~aiP~aLp~~vti~la~g~~~mak~~ilvk~~~aiE~Lg~v~vIc~DKTGTLT~n~m~v~~~~  394 (920)
T 1mhs_A          315 RSNPIVQILEFTLAITIIGVPVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPY  394 (920)
T ss_dssp             TTCCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTTCCCCCTTTHHHHHTCCEEEEETBTTTBSSCSCCCCCB
T ss_pred             cCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHhCCeEEecCchhhhhccCcEEEECCCCCccccceeEEEEe
Confidence            466788999999999999999999999999999999999999874                3444   899999998886


Q ss_pred             hhh-----hccccceeeec-------CC----------------ccccCCceeEEeeccccccccccc------------
Q psy78           243 ALT-----RLKKYNISCIN-------SR----------------VINVSGSINCVCFDKMFESTGWTL------------  282 (523)
Q Consensus       243 ~~~-----~~~~~~il~~~-------~~----------------~~~~~~~v~~v~fDK~~~~~~~~~------------  282 (523)
                      ..+     ++.....+|.+       |-                ..+.....+.+.||...+......            
T Consensus       395 ~~~g~~~~~ll~~a~l~~~~~~~~~~P~e~Al~~~~~~~~~~~~~~~~~~~~~~~pF~s~~k~ms~iv~~~~g~~~~~~K  474 (920)
T 1mhs_A          395 TVAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVSKKVVAVVESPQGERITCVK  474 (920)
T ss_dssp             CCSCCCCTHHHHHHHHSCCCSSCSCCSHHHHHHHHHHHSSSCCGGGSCCCEEEEEEEETTTTEEEEEECCSSSSCEEEEE
T ss_pred             ecCCCCHHHHHHHHHHhcCCcccCCChHHHHHHHHHHhcccchhhccccceeEEeeccCCCCeEEEEEEeCCCcEEEEEe
Confidence            532     11111112211       10                001112344555654111000000            


Q ss_pred             cCCC---------C----cchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCc
Q psy78           283 EEPM---------K----FVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKP  349 (523)
Q Consensus       283 ~~~~---------~----~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~  349 (523)
                      ..++         .    +.++.+.+.+++++++|+|++++|++..                |.+++++|+++++|++||
T Consensus       475 Gape~il~~c~~~~~~~~~~~~~~~~~~~~~a~~G~RvL~vA~~~~----------------e~~l~~lGli~i~Dp~R~  538 (920)
T 1mhs_A          475 GAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGVARKRG----------------EGSWEILGIMPCMDPPRH  538 (920)
T ss_dssp             ECHHHHHHHCCCSSCCCHHHHHHHHHHHHHHHTSSCCCCEECCCSS----------------SCSCCCCBBCCCCCCCCH
T ss_pred             CCHHHHHHhccccCCCCHHHHHHHHHHHHHHHhCCCEEEEEEEecc----------------ccccEEEEEEEEeccccc
Confidence            0000         0    1134566778899999999999998742                467999999999999999


Q ss_pred             chHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCc
Q psy78           350 QTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSK  429 (523)
Q Consensus       350 ~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (523)
                      +++++|++||++||+++|+|||++.+|..+|+++|++...   +  ++....                            
T Consensus       539 ea~~aI~~l~~aGI~v~MiTGD~~~TA~aIA~~lGI~~~~---~--~~~~~~----------------------------  585 (920)
T 1mhs_A          539 DTYKTVCEAKTLGLSIKMLTGDAVGIARETSRQLGLGTNI---Y--NAERLG----------------------------  585 (920)
T ss_dssp             HHHHHHHHHHHHTCEEEEEESSCHHHHHHHHHHHTSSCSC---C--CSSSSS----------------------------
T ss_pred             cHHHHHHHHhhcCceEEEEcCCCHHHHHHHHHHcCCCccc---c--Ccccee----------------------------
Confidence            9999999999999999999999999999999999996310   0  000000                            


Q ss_pred             hhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhC
Q psy78           430 TEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       430 ~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A  509 (523)
                                     ++|+.     ....+.+.+...+..+++|++|++|..+|+.+++.++.|+|+|||.||+|||+.|
T Consensus       586 ---------------~~g~~-----~~~~~el~~~~~~~~V~arv~P~~K~~iV~~Lq~~g~~Vam~GDGvNDapaLk~A  645 (920)
T 1mhs_A          586 ---------------LGGGG-----DMPGSEVYDFVEAADGFAEVFPQHKYNVVEILQQRGYLVAMTGDGVNDAPSLKKA  645 (920)
T ss_dssp             ---------------SCBCC-----CGGGGGGGTTTTTTSCEESCCSTHHHHHHHHHHTTTCCCEECCCCGGGHHHHHHS
T ss_pred             ---------------ecCcc-----cCCHHHHHHHHhhCeEEEEeCHHHHHHHHHHHHhCCCeEEEEcCCcccHHHHHhC
Confidence                           00000     0000112223334468999999999999999999999999999999999999999


Q ss_pred             CccEEecccC
Q psy78           510 HAGISLSEAE  519 (523)
Q Consensus       510 ~vGIAMgna~  519 (523)
                      |+|||||++.
T Consensus       646 dvGIAmg~gt  655 (920)
T 1mhs_A          646 DTGIAVEGSS  655 (920)
T ss_dssp             SEEEEETTSC
T ss_pred             CcCccccccc
Confidence            9999999864

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=100.00  E-value=1.7e-35  Score=337.23  Aligned_cols=309  Identities=25%  Similarity=0.330  Sum_probs=207.0

Q ss_pred             ecCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccc----------------cccc---cceeeeeeehh
Q psy78           181 LRGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNIS----------------CINS---RVINLMTVGKL  241 (523)
Q Consensus       181 ~~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~----------------~~~~---~t~~~m~v~~~  241 (523)
                      +.+.++.+++.++++++|++||||||+++|++++.|+.||+|+|++                |+++   +|+|+|+|.++
T Consensus       317 ~~~~~~~~~~~~~i~llv~~iP~~Lp~~vti~l~~~~~~mak~~ilvk~~~avE~Lg~v~~Ic~DKTGTLT~n~m~v~~~  396 (1028)
T 2zxe_A          317 ILGYSWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHM  396 (1028)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTTTEEESSTTHHHHHHHCCEEEECCCCCCBCSSCEEEEE
T ss_pred             HccCcHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHhhCCceeccchHhhhhcCceEEeccCCCCCCCCeEEEEEE
Confidence            3567888999999999999999999999999999999999999984                3443   89999999999


Q ss_pred             hhhhhccc------------------------cceeeecCC----------------------cc---------------
Q psy78           242 YALTRLKK------------------------YNISCINSR----------------------VI---------------  260 (523)
Q Consensus       242 ~~~~~~~~------------------------~~il~~~~~----------------------~~---------------  260 (523)
                      +..+....                        ...+|.+..                      ++               
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~alc~~~~~~~~~~~hp~~~~~~~gdp~E~Al~~~a~~~~~~~~~~~  476 (1028)
T 2zxe_A          397 WFDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDASESALLKCIELCCGSVQGMR  476 (1028)
T ss_dssp             EETTEEEECCCCTTCCSCCCCSSCHHHHHHHHHHHHSCCCEECTTCTTSCGGGSCEESCHHHHHHHHHHHHHHSCHHHHH
T ss_pred             EECCeeeeccCCCCccccccccCCHHHHHHHHHHHhcCCCeeecCCCCCccccceeCCCchHHHHHHHHHHhCCCHHHHH
Confidence            88875310                        011221100                      00               


Q ss_pred             ccCCceeEEeecccccc--ccccc-------------cCC-------------------CCcchhHHHHHHHHHhhccCe
Q psy78           261 NVSGSINCVCFDKMFES--TGWTL-------------EEP-------------------MKFVPENIVSVLSEYTEQGYR  306 (523)
Q Consensus       261 ~~~~~v~~v~fDK~~~~--~~~~~-------------~~~-------------------~~~~~~~~~~~~~~~~~~G~r  306 (523)
                      +....+..+.||...+.  +-...             ..+                   +.+.++.+.+.+++++++|+|
T Consensus       477 ~~~~~~~~~pF~s~rk~msvi~~~~~~~~~~~~~~~KGA~e~il~~c~~~~~~g~~~~l~~~~~~~~~~~~~~~a~~G~R  556 (1028)
T 2zxe_A          477 DRNPKIVEIPFNSTNKYQLSIHENEKSSESRYLLVMKGAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGER  556 (1028)
T ss_dssp             HHSCEEEEECCCTTTCEEEEEEECSCTTTCCEEEEEEECHHHHHTTEEEECBTTBCCBCCHHHHHHHHHHHHHHHHTTCE
T ss_pred             HhCceEEEeccCcccceEEEEEeccCCCCCcEEEEEeCCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence            00112233344431000  00000             000                   001235577788899999999


Q ss_pred             EEEEEEecCCchhHHHhhhcc---hhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           307 VIALASRTLSIEDYKHLNYMK---REDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       307 ~l~~a~k~l~~~~~~~~~~~~---~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      |+++|+|+++.+........+   .+..|+|++++|+++++|++||+++++|++|+++||+++|+|||+..+|..+|+++
T Consensus       557 vL~~A~~~l~~~~~~~~~~~~~~~~~~~e~~l~~lG~i~i~Dplr~~~~~aI~~l~~aGI~v~miTGD~~~tA~~ia~~l  636 (1028)
T 2zxe_A          557 VLGFCHFALPEDKYNEGYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGV  636 (1028)
T ss_dssp             EEEEEEEECCSTTSCTTCCCCTTTTCSCCSSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH
T ss_pred             EEEEEEEecCccccccccccchhhhhhhhcCeEEEeeeccCCCCChhHHHHHHHHHHcCCEEEEECCCCHHHHHHHHHHc
Confidence            999999998653211100011   12457899999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhh
Q psy78           384 GIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPR  463 (523)
Q Consensus       384 gi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~  463 (523)
                      |++.++...+.                      +.... ......     ..........+++|++++.+   .++.+..
T Consensus       637 gi~~~~~~~i~----------------------~~~~~-~~~~~~-----~~~~~~~~~~vi~G~~l~~~---~~~~l~~  685 (1028)
T 2zxe_A          637 GIISEGNETIE----------------------DIAAR-LNIPIG-----QVNPRDAKACVVHGSDLKDL---STEVLDD  685 (1028)
T ss_dssp             TSSCTTCCCHH----------------------HHHHH-TTCCGG-----GSCGGGCCEEEEEHHHHTTC---CHHHHHH
T ss_pred             CCCCCCchhHH----------------------HHHhh-cCcchh-----hccccccceEEEEcHHhhhC---CHHHHHH
Confidence            99743221100                      00000 000000     00001112345566544322   1122222


Q ss_pred             hhccc--EEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEec-ccCC
Q psy78           464 IIVKG--AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLS-EAES  520 (523)
Q Consensus       464 ~~~~~--~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMg-na~~  520 (523)
                      .....  .+++|++|++|..+++.+++.++.|+|+|||.||++||+.||+||||| ||.+
T Consensus       686 ~~~~~~~~v~ar~~P~~K~~iV~~lq~~g~~V~~iGDG~ND~paLk~AdvGIAmg~~gtd  745 (1028)
T 2zxe_A          686 ILHYHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKKADIGVAMGISGSD  745 (1028)
T ss_dssp             HHHHCSEEEEESCCHHHHHHHHHHHHHTTCCEEEEECSGGGHHHHHHSSEEEEESSSCCH
T ss_pred             HHhhCCcEEEEEcCHHHHHHHHHHHHhCCCEEEEEcCCcchHHHHHhCCceEEeCCccCH
Confidence            22222  489999999999999999999999999999999999999999999999 5643

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=100.00  E-value=1.6e-34  Score=316.24  Aligned_cols=206  Identities=26%  Similarity=0.367  Sum_probs=171.1

Q ss_pred             chHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccccCC
Q psy78           185 SLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINVSG  264 (523)
Q Consensus       185 ~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~~~  264 (523)
                      ++..++.+++++++++||||||+++|++++.++.+++|+                           |+++|+++++|.++
T Consensus       366 ~~~~~l~~ai~vlviacPcaL~la~p~a~~~~~~~~a~~---------------------------gilvk~~~alE~l~  418 (736)
T 3rfu_A          366 ALSYGLIAAVSVLIIACPCALGLATPMSIMVGVGKGAQS---------------------------GVLIKNAEALERME  418 (736)
T ss_dssp             STTHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHHHHHT---------------------------TEEESCHHHHHHHT
T ss_pred             hHHHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHHHHhhc---------------------------ceeechHHHHHHhc
Confidence            378899999999999999999999999999999999999                           99999999999999


Q ss_pred             ceeEEeeccc--cc-----cccccccCCC--------------Ccc----------------------------------
Q psy78           265 SINCVCFDKM--FE-----STGWTLEEPM--------------KFV----------------------------------  289 (523)
Q Consensus       265 ~v~~v~fDK~--~~-----~~~~~~~~~~--------------~~~----------------------------------  289 (523)
                      +++++||||.  ++     .++...+...              .+.                                  
T Consensus       419 ~v~~i~fDKTGTLT~g~~~v~~i~~~~~~~~~~l~~aa~le~~s~hPla~Aiv~~a~~~~~~~~~~~~f~~~~g~gv~~~  498 (736)
T 3rfu_A          419 KVNTLVVDKTGTLTEGHPKLTRIVTDDFVEDNALALAAALEHQSEHPLANAIVHAAKEKGLSLGSVEAFEAPTGKGVVGQ  498 (736)
T ss_dssp             SCCEEEECCBTTTBCSSCEEEEEEESSSCHHHHHHHHHHHHHSSCCHHHHHHHHHHHTTCCCCCCCSCCCCCTTTEEEEC
T ss_pred             CCCEEEEeCCCCCcCCceEEEEEEecCCCHHHHHHHHHHHhhcCCChHHHHHHHHHHhcCCCccCcccccccCCceEEEE
Confidence            9999999991  11     0100000000              000                                  


Q ss_pred             --------------------hhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCc
Q psy78           290 --------------------PENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKP  349 (523)
Q Consensus       290 --------------------~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~  349 (523)
                                          .+.+.+..+++..+|.|++.+|                     .|.+++|+++++|++|+
T Consensus       499 ~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~G~~vl~va---------------------~d~~~~G~i~i~D~i~~  557 (736)
T 3rfu_A          499 VDGHHVAIGNARLMQEHGGDNAPLFEKADELRGKGASVMFMA---------------------VDGKTVALLVVEDPIKS  557 (736)
T ss_dssp             SSSSCEEEESHHHHHHHCCCCHHHHHHHHHHHHTTCEEEEEE---------------------ETTEEEEEEEEECCBCS
T ss_pred             ECCEEEEEcCHHHHHHcCCChhHHHHHHHHHHhcCCeEEEEE---------------------ECCEEEEEEEeeccchh
Confidence                                0112223334444444444443                     57899999999999999


Q ss_pred             chHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCc
Q psy78           350 QTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSK  429 (523)
Q Consensus       350 ~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (523)
                      +++++|++|+++|++++|+|||+..++..+++++|++                                           
T Consensus       558 ~~~~aI~~L~~~Gi~v~mlTGd~~~~a~~ia~~lgi~-------------------------------------------  594 (736)
T 3rfu_A          558 STPETILELQQSGIEIVMLTGDSKRTAEAVAGTLGIK-------------------------------------------  594 (736)
T ss_dssp             SHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHTCC-------------------------------------------
T ss_pred             hHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCCC-------------------------------------------
Confidence            9999999999999999999999999999999999996                                           


Q ss_pred             hhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhC
Q psy78           430 TEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       430 ~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                             .+++++.|++|..+++.+++.++.|+|+|||.||++||+.|
T Consensus       595 ---------------------------------------~v~a~~~P~~K~~~v~~l~~~g~~V~~vGDG~ND~paL~~A  635 (736)
T 3rfu_A          595 ---------------------------------------KVVAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAKA  635 (736)
T ss_dssp             ---------------------------------------CEECSCCHHHHHHHHHHHHHHSCCEEEEECSSTTHHHHHHS
T ss_pred             ---------------------------------------EEEEecCHHHHHHHHHHHHhcCCEEEEEECChHhHHHHHhC
Confidence                                                   37889999999999999999999999999999999999999


Q ss_pred             CccEEecccCC
Q psy78           510 HAGISLSEAES  520 (523)
Q Consensus       510 ~vGIAMgna~~  520 (523)
                      |+||||||+.+
T Consensus       636 dvGIAmg~g~d  646 (736)
T 3rfu_A          636 DIGIAMGTGTD  646 (736)
T ss_dssp             SEEEEESSSCS
T ss_pred             CEEEEeCCccH
Confidence            99999999765

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=100.00  E-value=4.1e-34  Score=325.69  Aligned_cols=179  Identities=31%  Similarity=0.451  Sum_probs=138.9

Q ss_pred             hHHHHHHHHH--hhccCeEEEEEEecCCchhHH--HhhhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEE
Q psy78           291 ENIVSVLSEY--TEQGYRVIALASRTLSIEDYK--HLNYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVV  366 (523)
Q Consensus       291 ~~~~~~~~~~--~~~G~r~l~~a~k~l~~~~~~--~~~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vv  366 (523)
                      +.+.+.++++  +++|+||+++|+|+++.....  ......++.+|+|++++|+++++|++|++++++|++|+++|++++
T Consensus       544 ~~~~~~~~~~~~a~~GlRvLa~A~k~~~~~~~~~~~~~~~~~~~~e~~l~~lG~~~i~D~lr~~~~~~I~~l~~~Gi~v~  623 (995)
T 3ar4_A          544 EKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVI  623 (995)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEEEEEESSCCCGGGCCTTCGGGHHHHTCSEEEEEEEEEECCBCTTHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHhhhccceEEEEEEEecCccccccccccchhhhhhccCcEEEEEEeecCCCchhHHHHHHHHHHcCCEEE
Confidence            4566778889  999999999999998643211  001123456789999999999999999999999999999999999


Q ss_pred             EEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEe
Q psy78           367 MITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVT  446 (523)
Q Consensus       367 i~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~  446 (523)
                      |+|||+..+|..+|+++|+...+..+        .    .                                    .+++
T Consensus       624 miTGD~~~ta~~ia~~lgi~~~~~~i--------~----~------------------------------------~~~~  655 (995)
T 3ar4_A          624 MITGDNKGTAIAICRRIGIFGENEEV--------A----D------------------------------------RAYT  655 (995)
T ss_dssp             EEESSCHHHHHHHHHHHTSSCTTCCC--------T----T------------------------------------TEEE
T ss_pred             EECCCCHHHHHHHHHHcCcCCCCCcc--------c----c------------------------------------eEEE
Confidence            99999999999999999997432110        0    0                                    0122


Q ss_pred             cccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           447 GKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       447 ~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      |++++.+.   ++.+.+...+..+++|++|++|..+++.++++++.|+|+|||.||++||+.||+|||||++.+
T Consensus       656 g~~~~~l~---~~~~~~~~~~~~v~~r~~P~~K~~~v~~l~~~g~~v~~~GDG~ND~~alk~Advgiamg~g~~  726 (995)
T 3ar4_A          656 GREFDDLP---LAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTA  726 (995)
T ss_dssp             HHHHHTSC---HHHHHHHHHHCCEEESCCSSHHHHHHHHHHTTTCCEEEEECSGGGHHHHHHSTEEEEETTSCH
T ss_pred             chhhhhCC---HHHHHHHHhhCcEEEEeCHHHHHHHHHHHHHCCCEEEEEcCCchhHHHHHHCCeEEEeCCCCH
Confidence            22221111   112233344557999999999999999999999999999999999999999999999997654

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.3e-33  Score=310.67  Aligned_cols=227  Identities=23%  Similarity=0.277  Sum_probs=170.6

Q ss_pred             CCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCcccc
Q psy78           183 GRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINV  262 (523)
Q Consensus       183 ~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~  262 (523)
                      +.++..++.+++++++++||||||+++|+++..++.+++|+                           |+++|+++++|.
T Consensus       348 ~~~~~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~---------------------------gilvk~~~~lE~  400 (723)
T 3j09_A          348 HAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAEL---------------------------GILIKNADALEV  400 (723)
T ss_dssp             TCTTCCSHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTT---------------------------TCEESSTTHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHC---------------------------CeEEeChHHHHH
Confidence            45677889999999999999999999999999999999999                           999999999999


Q ss_pred             CCceeEEeeccc--cccccccc-----cCCC--------------CcchhHHHHHH-HHHhhccC---------------
Q psy78           263 SGSINCVCFDKM--FESTGWTL-----EEPM--------------KFVPENIVSVL-SEYTEQGY---------------  305 (523)
Q Consensus       263 ~~~v~~v~fDK~--~~~~~~~~-----~~~~--------------~~~~~~~~~~~-~~~~~~G~---------------  305 (523)
                      +|+++++||||.  ++.....+     .+.+              .+.|  ..+.+ +.....|.               
T Consensus       401 lg~v~~i~fDKTGTLT~g~~~v~~~~~~~~~~~~~l~~aa~~e~~s~hP--~~~Ai~~~a~~~~~~~~~~~~~~~~~g~g  478 (723)
T 3j09_A          401 AEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHP--IAEAIVKKALEHGIELGEPEKVEVIAGEG  478 (723)
T ss_dssp             GGGCCEEEEEHHHHTSCSCCEEEEEEESSSCHHHHHHHHHHHHTTCCSH--HHHHHHHHHHHTTCCCCSCCCCEEETTTE
T ss_pred             hhcCCEEEEcCCCccccCceEEEEEEeCCCCHHHHHHHHHHHhccCCCc--hhHHHHHHHHhcCCCcCCccceEEecCCc
Confidence            999999999991  11111000     0000              0011  11111 11111111               


Q ss_pred             -e--EEEEEEecCCch--------hHHHh-----hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEc
Q psy78           306 -R--VIALASRTLSIE--------DYKHL-----NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMIT  369 (523)
Q Consensus       306 -r--~l~~a~k~l~~~--------~~~~~-----~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~T  369 (523)
                       +  .+.++.+.+..+        .....     .......++.|++++|+++++|++||+++++|++|+++|++++|+|
T Consensus       479 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~va~~~~~~G~i~i~D~~~~~~~~~i~~l~~~Gi~v~~~T  558 (723)
T 3j09_A          479 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT  558 (723)
T ss_dssp             EEETTEEEECHHHHHHTTCCCCHHHHHHHHHHHTTTCEEEEEEETTEEEEEEEEECCSCTTHHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEEEEECCHHHHHhcCCCccHHHHHHHHHHHhcCCeEEEEEECCEEEEEEeecCCcchhHHHHHHHHHHCCCEEEEEC
Confidence             1  111222111000        00000     0001113456889999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEeccc
Q psy78           370 GDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKS  449 (523)
Q Consensus       370 Gr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  449 (523)
                      ||+..++..+++++|++                                                               
T Consensus       559 Gd~~~~a~~ia~~lgi~---------------------------------------------------------------  575 (723)
T 3j09_A          559 GDNWRSAEAISRELNLD---------------------------------------------------------------  575 (723)
T ss_dssp             SSCHHHHHHHHHHHTCS---------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHcCCc---------------------------------------------------------------
Confidence            99999999999999995                                                               


Q ss_pred             HHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           450 WELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       450 ~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                                         .+++++.|++|..+++.+++. +.|+|+|||.||++||+.||+||||||+.+.
T Consensus       576 -------------------~~~~~~~P~~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~vgiamg~g~~~  627 (723)
T 3j09_A          576 -------------------LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGSGSDV  627 (723)
T ss_dssp             -------------------EEECSCCTTCHHHHHHHHTTT-CCEEEEECSSTTHHHHHHSSEEEECCCCSCC
T ss_pred             -------------------EEEccCCHHHHHHHHHHHhcC-CeEEEEECChhhHHHHhhCCEEEEeCCCcHH
Confidence                               478999999999999999998 8999999999999999999999999988654

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=100.00  E-value=1.2e-33  Score=306.90  Aligned_cols=227  Identities=23%  Similarity=0.269  Sum_probs=171.2

Q ss_pred             CCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCcccc
Q psy78           183 GRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVINV  262 (523)
Q Consensus       183 ~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~~  262 (523)
                      +.++..++.+++++++++||||||+++|+++..++.+++|+                           |+++|+++++|.
T Consensus       270 ~~~~~~~~~~~i~vlvia~P~aL~la~p~a~~~~~~~~a~~---------------------------gilvk~~~~lE~  322 (645)
T 3j08_A          270 HAPLLFAFTTLIAVLVVACPCAFGLATPTALTVGMGKGAEL---------------------------GILIKNADALEV  322 (645)
T ss_dssp             SCSCCCTTTTTHHHHHHHSCTTHHHHHHHHHHHHHHHHHTT---------------------------CCCCSSTTHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHC---------------------------CeEecCchHHHH
Confidence            45677788999999999999999999999999999999999                           999999999999


Q ss_pred             CCceeEEeecccccccc--ccc-----cCCC--------------CcchhHHHHHH-HHHhhccC---------------
Q psy78           263 SGSINCVCFDKMFESTG--WTL-----EEPM--------------KFVPENIVSVL-SEYTEQGY---------------  305 (523)
Q Consensus       263 ~~~v~~v~fDK~~~~~~--~~~-----~~~~--------------~~~~~~~~~~~-~~~~~~G~---------------  305 (523)
                      +++++++||||.=+-|.  ...     .+.+              .+.|  ..+.+ +.....|.               
T Consensus       323 lg~v~~i~fDKTGTLT~~~~~v~~~~~~~~~~~~~l~~aa~~e~~s~hP--la~Aiv~~a~~~g~~~~~~~~~~~~~g~g  400 (645)
T 3j08_A          323 AEKVTAVIFDKTGTLTKGKPEVTDLVPLNGDERELLRLAAIAERRSEHP--IAEAIVKKALEHGIELGEPEKVEVIAGEG  400 (645)
T ss_dssp             GGGCCEEEEEGGGTSSSSCCEEEEEEESSSCHHHHHHHHHHHHTTCCSH--HHHHHHHHHHHTTCCCCSCCCCEEETTTE
T ss_pred             hhCCCEEEEcCcccccCCCeEEEEEEeCCCCHHHHHHHHHHHhhcCCCh--hHHHHHHHHHhcCCCcCCccceEEecCCc
Confidence            99999999999211111  100     0000              0111  11111 11111221               


Q ss_pred             -e--EEEEEEecCCch--------hHHHh-----hhcchhhhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEc
Q psy78           306 -R--VIALASRTLSIE--------DYKHL-----NYMKREDIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMIT  369 (523)
Q Consensus       306 -r--~l~~a~k~l~~~--------~~~~~-----~~~~~~~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~T  369 (523)
                       +  .+.++.+.+..+        .....     .......++.|++++|+++++|+++|+++++|++|+++|++++|+|
T Consensus       401 ~~~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~va~~~~~~G~i~~~D~l~~~~~~~i~~L~~~Gi~v~~~T  480 (645)
T 3j08_A          401 VVADGILVGNKRLMEDFGVAVSNEVELALEKLEREAKTAVIVARNGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMIT  480 (645)
T ss_dssp             EEETTEEEECHHHHHHTTCCCCHHHHHHHHHHHTTTCCCEEEEETTEEEEEEEEECCCTTTHHHHHHHHHHTTCEEEEEC
T ss_pred             eEEEEEEECCHHHHHhcCCCccHHHHHHHHHHHhcCCeEEEEEECCEEEEEEEecCCchhHHHHHHHHHHHCCCEEEEEe
Confidence             1  112222211000        00000     0001123556889999999999999999999999999999999999


Q ss_pred             CCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEeccc
Q psy78           370 GDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKS  449 (523)
Q Consensus       370 Gr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~  449 (523)
                      ||+..++..+++++|++                                                               
T Consensus       481 Gd~~~~a~~ia~~lgi~---------------------------------------------------------------  497 (645)
T 3j08_A          481 GDNWRSAEAISRELNLD---------------------------------------------------------------  497 (645)
T ss_dssp             SSCHHHHHHHHHHHTCS---------------------------------------------------------------
T ss_pred             CCCHHHHHHHHHHcCCC---------------------------------------------------------------
Confidence            99999999999999995                                                               


Q ss_pred             HHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           450 WELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       450 ~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                                         .+++++.|++|..+++.++++ +.|+|+|||.||++||+.||+||||||+.+.
T Consensus       498 -------------------~~~~~~~P~~K~~~v~~l~~~-~~v~~vGDg~ND~~al~~A~vgiamg~g~~~  549 (645)
T 3j08_A          498 -------------------LVIAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGSGSDV  549 (645)
T ss_dssp             -------------------EEECSCCTTCHHHHHHHHTTT-CCEEEEECSSSCHHHHHHSSEEEEECCCSCC
T ss_pred             -------------------EEEEeCCHHhHHHHHHHHhhC-CeEEEEeCCHhHHHHHHhCCEEEEeCCCcHH
Confidence                               478899999999999999998 8999999999999999999999999988654

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=99.62  E-value=4.1e-20  Score=179.52  Aligned_cols=109  Identities=23%  Similarity=0.416  Sum_probs=97.9

Q ss_pred             hhhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceE
Q psy78           330 DIEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVY  409 (523)
Q Consensus       330 ~~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~  409 (523)
                      ....+..+.|.+.+.++++|+++++|++|+++|++++|+||++...+..+++++|++                       
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~-----------------------  176 (263)
T 2yj3_A          120 AVYINGEPIASFNISDVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ-----------------------  176 (263)
Confidence            455677899999999999999999999999999999999999999999999999985                       


Q ss_pred             EEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC
Q psy78           410 FTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL  489 (523)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~  489 (523)
                                                                                 .++..+.|..|..+++.++..
T Consensus       177 -----------------------------------------------------------~~f~~~~p~~k~~~~~~l~~~  197 (263)
T 2yj3_A          177 -----------------------------------------------------------EYYSNLSPEDKVRIIEKLKQN  197 (263)
Confidence                                                                       244455688999999999988


Q ss_pred             CCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           490 GYYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       490 ~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      +++++|+|||.||++|++.||+||+||++.+
T Consensus       198 ~~~~~~VGD~~~D~~aa~~Agv~va~g~~~~  228 (263)
T 2yj3_A          198 GNKVLMIGDGVNDAAALALADVSVAMGNGVD  228 (263)
Confidence            8899999999999999999999999998643

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=99.69  E-value=3e-16  Score=154.26  Aligned_cols=104  Identities=34%  Similarity=0.462  Sum_probs=94.2

Q ss_pred             cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec
Q psy78           334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS  413 (523)
Q Consensus       334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~  413 (523)
                      |..+.+.+...+++.|+++++|+.|+++|+++.++||++...+..+++.+|+.                           
T Consensus       151 d~~~~~~~~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~---------------------------  203 (287)
T 3a1c_A          151 NGRVEGIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD---------------------------  203 (287)
T ss_dssp             TTEEEEEEEEECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS---------------------------
T ss_pred             CCEEEEEEEeccccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCc---------------------------
Confidence            46888998899999999999999999999999999999999999999999984                           


Q ss_pred             CcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEE
Q psy78           414 GVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYV  493 (523)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V  493 (523)
                                                                             .++..+.|..|..+++.+... +++
T Consensus       204 -------------------------------------------------------~~f~~i~~~~K~~~~~~l~~~-~~~  227 (287)
T 3a1c_A          204 -------------------------------------------------------LVIAEVLPHQKSEEVKKLQAK-EVV  227 (287)
T ss_dssp             -------------------------------------------------------EEECSCCTTCHHHHHHHHTTT-CCE
T ss_pred             -------------------------------------------------------eeeeecChHHHHHHHHHHhcC-CeE
Confidence                                                                   245556688999999999888 999


Q ss_pred             EEEcCChhhHHHHHhCCccEEecccCC
Q psy78           494 AMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       494 ~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      ++|||+.||++|.+.||+||+|+++.+
T Consensus       228 ~~vGDs~~Di~~a~~ag~~v~~~~~~~  254 (287)
T 3a1c_A          228 AFVGDGINDAPALAQADLGIAVGSGSD  254 (287)
T ss_dssp             EEEECTTTCHHHHHHSSEEEEECCCSC
T ss_pred             EEEECCHHHHHHHHHCCeeEEeCCCCH
Confidence            999999999999999999999998754

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=99.64  E-value=5.3e-16  Score=152.24  Aligned_cols=183  Identities=14%  Similarity=0.125  Sum_probs=109.9

Q ss_pred             cceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec
Q psy78           334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS  413 (523)
Q Consensus       334 dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~  413 (523)
                      |+|++.   -...+.+.++++|++++++|++++++|||+...+..+.+++|++   .++++.||+.+.+.....+.....
T Consensus        29 DGTLl~---~~~~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~---~~~I~~nGa~i~~~~~~~l~~~~l  102 (285)
T 3pgv_A           29 DGTLLS---PDHFLTPYAKETLKLLTARGINFVFATGRHYIDVGQIRDNLGIR---SYMITSNGARVHDSDGQQIFAHNL  102 (285)
T ss_dssp             CCCCSC---TTSCCCHHHHHHHHHHHTTTCEEEEECSSCGGGGHHHHHHHCSC---CEEEEGGGTEEECTTSCEEEECCC
T ss_pred             cCCCCC---CCCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCCC---ccEEEcCCeEEECCCCCEEEecCC
Confidence            455543   23568999999999999999999999999999999999999985   578899998765433322222222


Q ss_pred             CcchhhhhhhhcccC------------------chh----------------hhhccCCCceEEEEe-c--ccHHHHHhh
Q psy78           414 GVSAIQTKAKKLNYS------------------KTE----------------EELGLSSGAYKFAVT-G--KSWELIRDQ  456 (523)
Q Consensus       414 ~~~~~~~~~~~~~~~------------------~~~----------------~~~~~~~~~~~l~i~-~--~~~~~l~~~  456 (523)
                      +.+............                  ...                ...........+.+. .  +....+.+.
T Consensus       103 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~~~~~  182 (285)
T 3pgv_A          103 DRDIAADLFEIVRNDPKIVTNVYREDEWYMNRHRPEEMRFFKEAVFNYKLYEPGELDPQGISKVFFTCEDHEHLLPLEQA  182 (285)
T ss_dssp             CHHHHHHHTTTTTTCTTCEEEEEETTEEEESSCC-----CTTSCCCCEEECCTTCSCCSSEEEEEEECSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCeEEEEEcCCcEEEcCCCHHHHHHHHhcCCccEEecHHHcCCCCceEEEEeCCCHHHHHHHHHH
Confidence            111111100000000                  000                000001111223333 2  122222222


Q ss_pred             CcchHhh---hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           457 MPELIPR---IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       457 ~~~~~~~---~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ..+.+..   .......+.++.|.  +|+.+++.++++    .++++||||+.||++|++.||+|||||||.+++
T Consensus       183 l~~~~~~~~~~~~s~~~~~ei~~~~~~K~~al~~l~~~lgi~~~~~ia~GD~~NDi~ml~~ag~~vAm~Na~~~v  257 (285)
T 3pgv_A          183 MNARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAKMLGYTLSDCIAFGDGMNDAEMLSMAGKGCIMANAHQRL  257 (285)
T ss_dssp             HHHHHGGGEEEEESSTTEEEEEETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHHH
T ss_pred             HHHHhcCCEEEEEeCCceEEEecCCCChHHHHHHHHHHhCCCHHHEEEECCcHhhHHHHHhcCCEEEccCCCHHH
Confidence            2111111   01111123455554  799999999886    468999999999999999999999999998653

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=99.61  E-value=3.1e-15  Score=145.69  Aligned_cols=109  Identities=38%  Similarity=0.503  Sum_probs=97.8

Q ss_pred             hhccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEE
Q psy78           331 IEKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYF  410 (523)
Q Consensus       331 ~e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~  410 (523)
                      ...+..++|.+.+.++++|+++++|+.|+++|+++.++||++...+..+++.+|+.                        
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~------------------------  184 (280)
T 3skx_A          129 ILKNGEVSGVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------------------  184 (280)
T ss_dssp             EEETTEEEEEEEEEEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS------------------------
T ss_pred             EEECCEEEEEEEecCCCCHhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCh------------------------
Confidence            34567889999999999999999999999999999999999999999999999985                        


Q ss_pred             EecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCC
Q psy78           411 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLG  490 (523)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~  490 (523)
                                                                                ..+..+.|.+|...++.+.+..
T Consensus       185 ----------------------------------------------------------~~f~~~~~~~k~~~~k~~~~~~  206 (280)
T 3skx_A          185 ----------------------------------------------------------DYFAEVLPHEKAEKVKEVQQKY  206 (280)
T ss_dssp             ----------------------------------------------------------EEECSCCGGGHHHHHHHHHTTS
T ss_pred             ----------------------------------------------------------hHhHhcCHHHHHHHHHHHHhcC
Confidence                                                                      3566777889999999998876


Q ss_pred             CEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           491 YYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       491 ~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                       +++||||+.||++|++.||+||||||+.+++
T Consensus       207 -~~~~vGD~~nDi~~~~~Ag~~va~~~~~~~~  237 (280)
T 3skx_A          207 -VTAMVGDGVNDAPALAQADVGIAIGAGTDVA  237 (280)
T ss_dssp             -CEEEEECTTTTHHHHHHSSEEEECSCCSSSC
T ss_pred             -CEEEEeCCchhHHHHHhCCceEEecCCcHHH
Confidence             6799999999999999999999999987653

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=99.61  E-value=3.5e-16  Score=152.84  Aligned_cols=177  Identities=18%  Similarity=0.167  Sum_probs=103.9

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec-Ccchhhhhh-
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS-GVSAIQTKA-  422 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~-~~~~~~~~~-  422 (523)
                      ..+.+.++++|++++++|++++++|||+...+..+.+++|+..+..++++.||+ .............. ..+...... 
T Consensus        21 ~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa-i~~~~~~~~~~~~~~~~~~~~~i~~   99 (279)
T 3mpo_A           21 NELAQATIDAVQAAKAQGIKVVLCTGRPLTGVQPYLDAMDIDGDDQYAITFNGS-VAQTISGKVLTNHSLTYEDYIDLEA   99 (279)
T ss_dssp             ---CHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCCSSSCEEEEGGGT-EEEETTSCEEEECCCCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCCCCCCEEEEcCcE-EEECCCCCEEEecCCCHHHHHHHHH
Confidence            458999999999999999999999999999999999999998767789999998 54333333333221 111111100 


Q ss_pred             --hhcccC-----------------c---------------hhhhhcc-CCCceEEEEec--ccHHHHHhhCcchHhh--
Q psy78           423 --KKLNYS-----------------K---------------TEEELGL-SSGAYKFAVTG--KSWELIRDQMPELIPR--  463 (523)
Q Consensus       423 --~~~~~~-----------------~---------------~~~~~~~-~~~~~~l~i~~--~~~~~l~~~~~~~~~~--  463 (523)
                        ......                 .               ....... ......+.+..  +..+.+.+.....+..  
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~~~  179 (279)
T 3mpo_A          100 WARKVRAHFQIETPDYIYTANKDISAYTIAESYLVRMLIQYREVSETPRDLTISKAMFVDYPQVIEQVKANMPQDFKDRF  179 (279)
T ss_dssp             HHHHTTCCEEEECSSCEEECCSBCCHHHHHHHHHHTCCEEECCGGGSCTTCCCCEEEEECCHHHHHHHHHHCCHHHHHHE
T ss_pred             HHHHcCCeEEEEECCEEEEcCCcchHHHHHHhhccCCcceecCHHHhhccCCcEEEEEcCCHHHHHHHHHHHHHHhCCCE
Confidence              000000                 0               0000000 11112222222  2233344444332221  


Q ss_pred             -hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           464 -IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       464 -~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                       .......+.++.|.  +|+.+++.+.++    .++++||||+.||++|++.||+|||||||.+++
T Consensus       180 ~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~na~~~~  245 (279)
T 3mpo_A          180 SVVQSAPYFIEVMNRRASKGGTLSELVDQLGLTADDVMTLGDQGNDLTMIKYAGLGVAMGNAIDEV  245 (279)
T ss_dssp             EEECCSSSEEEEEESSCCHHHHHHHHHHHTTCCGGGEEEC--CCTTHHHHHHSTEECBC---CCHH
T ss_pred             EEEEecCceEEEecCCCChHHHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcCceeeccCCCHHH
Confidence             11112224455554  799999999886    468999999999999999999999999998753

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=99.60  E-value=6.9e-16  Score=150.71  Aligned_cols=178  Identities=12%  Similarity=0.170  Sum_probs=108.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQTKA  422 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~~~  422 (523)
                      ...+.+.++++|++++++|++++++|||+...+..+.+++|++....++++.||+.+.+.......... .+.+......
T Consensus        20 ~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~~~~~~i~~nGa~i~~~~~~~~~~~~~l~~~~~~~i~   99 (279)
T 4dw8_A           20 KKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPNEVVPVLY   99 (279)
T ss_dssp             TSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTGGGTTCEEEEGGGTEEEETTTCCEEEECCCCGGGHHHHH
T ss_pred             CCccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHHHHHHhCCCCCCCEEEEeCCeEEEECCCCeEEEEecCCHHHHHHHH
Confidence            346899999999999999999999999999999999999998655678899999876644333333322 2211111100


Q ss_pred             h---hcccC-------------c-------------------hhhhhccCCCceEEEEecc--cHHHHHhhCcchHhh--
Q psy78           423 K---KLNYS-------------K-------------------TEEELGLSSGAYKFAVTGK--SWELIRDQMPELIPR--  463 (523)
Q Consensus       423 ~---~~~~~-------------~-------------------~~~~~~~~~~~~~l~i~~~--~~~~l~~~~~~~~~~--  463 (523)
                      .   .....             .                   .............+.+.+.  ..+.+.+...+.+..  
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~~~  179 (279)
T 4dw8_A          100 ECARTNHLSILTYDGAEIVTENSLDPYVQKEAFLNKMAIRETNDFLTDITLPVAKCLIVGDAGKLIPVESELCIRLQGKI  179 (279)
T ss_dssp             HHHHHTTCEEEEEETTEEEESCTTCHHHHHHHHHHTCEEEECSCHHHHSCSCCSCEEEESCHHHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHcCCEEEEEECCEEEEeCCCCHHHHHHhhhcCCCcccHHHHHHhhcCCceEEEEeCCHHHHHHHHHHHHHHhcCCE
Confidence            0   00000             0                   0000000111111222221  222222221111110  


Q ss_pred             -hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           464 -IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       464 -~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                       .......+.++.|.  +|+.+++.++++    .++++||||+.||++|++.||+|||||||.++
T Consensus       180 ~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~na~~~  244 (279)
T 4dw8_A          180 NVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEP  244 (279)
T ss_dssp             EEEEEETTEEEEECTTCCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHH
T ss_pred             EEEEcCCcEEEEecCCCChHHHHHHHHHHcCCCHHHEEEECCChhhHHHHHHcCcEEEcCCCcHH
Confidence             11111123455555  899999999886    56899999999999999999999999999764

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=99.58  E-value=4.2e-16  Score=152.81  Aligned_cols=172  Identities=16%  Similarity=0.106  Sum_probs=104.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhh---h
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQT---K  421 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~---~  421 (523)
                      .+.+.++++|++++++|++++++|||+...+..+.++++..   .++++.||+.+...  ....+.. .+......   .
T Consensus        39 ~i~~~~~~al~~l~~~G~~v~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~~~--~~~i~~~~l~~~~~~~i~~~  113 (283)
T 3dao_A           39 LIDPEYMSVIDRLIDKGIIFVVCSGRQFSSEFKLFAPIKHK---LLYITDGGTVVRTP--KEILKTYPMDEDIWKGMCRM  113 (283)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHTGGGGGG---CEEEETTTTEEECS--SCEEEECCCCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC---cEEEECCCcEEEEC--CEEEEEecCCHHHHHHHHHH
Confidence            68999999999999999999999999999999998888764   47888888876552  2222222 11111110   0


Q ss_pred             hhhc--c------c---------Cc-h--hhhh-------------ccC-CCceEEEEe--cccHHHHHhhCcchHhh--
Q psy78           422 AKKL--N------Y---------SK-T--EEEL-------------GLS-SGAYKFAVT--GKSWELIRDQMPELIPR--  463 (523)
Q Consensus       422 ~~~~--~------~---------~~-~--~~~~-------------~~~-~~~~~l~i~--~~~~~~l~~~~~~~~~~--  463 (523)
                      ....  .      .         .. .  ....             ... .....+.+.  .+..+.+.+...+.+..  
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ki~i~~~~~~~~~~~~~l~~~~~~~~  193 (283)
T 3dao_A          114 VRDELPACDYFAATPDFCFAEDGGSPIFHLLRDSYGFEMREVDDITRLDRNDIIKFTVFHPDKCEELCTPVFIPAWNKKA  193 (283)
T ss_dssp             HHHHCTTCEEEEECSSCEEESCTTSHHHHHHHHTSCCCEEECSCGGGCCCSCCCEEEEECSSCHHHHHTTTHHHHHTTTE
T ss_pred             HHHhcCCceEEEEeCCeEEEeCCCHHHHHHHHHhhcCCceEcCCHHHcCccCceEEEEEcChHHHHHHHHHHHHHhcCCE
Confidence            0000  0      0         00 0  0000             000 122223322  33333322221111111  


Q ss_pred             -hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           464 -IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       464 -~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                       .......+.++.|.  +|+.+++.++++    .++++||||+.||++|++.||+|||||||.+++
T Consensus       194 ~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~e~ia~GD~~NDi~ml~~ag~~vam~na~~~~  259 (283)
T 3dao_A          194 HLAAAGKEWVDCNAKGVSKWTALSYLIDRFDLLPDEVCCFGDNLNDIEMLQNAGISYAVSNARQEV  259 (283)
T ss_dssp             EEEEETTTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEEETTSCHHH
T ss_pred             EEEEecCceEEEeeCCCcHHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHhCCCEEEcCCCCHHH
Confidence             11111123455554  799999999986    468999999999999999999999999998653

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.55  E-value=2.2e-15  Score=148.01  Aligned_cols=175  Identities=14%  Similarity=0.096  Sum_probs=102.9

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK  423 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (523)
                      ...+.+.++++|++++++|++++++|||+...+..+.+++|++   .++++.||+.+.+.....+.....+.+.......
T Consensus        21 ~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~---~~~i~~nGa~i~~~~~~~~~~~~l~~~~~~~i~~   97 (290)
T 3dnp_A           21 NGKIHQATKDAIEYVKKKGIYVTLVTNRHFRSAQKIAKSLKLD---AKLITHSGAYIAEKIDAPFFEKRISDDHTFNIVQ   97 (290)
T ss_dssp             TSCCCHHHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHTTCC---SCEEEGGGTEEESSTTSCSEECCCCHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHHcCCC---CeEEEcCCeEEEcCCCCEEEecCCCHHHHHHHHH
Confidence            3468999999999999999999999999999999999999985   3788889887654222222222211111111000


Q ss_pred             hcccC---------c---------h--------------------------hhhhccCCCceEEEE--ecccHHHHHhhC
Q psy78           424 KLNYS---------K---------T--------------------------EEELGLSSGAYKFAV--TGKSWELIRDQM  457 (523)
Q Consensus       424 ~~~~~---------~---------~--------------------------~~~~~~~~~~~~l~i--~~~~~~~l~~~~  457 (523)
                      .+...         .         .                          ............+.+  +.+....+.+..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l  177 (290)
T 3dnp_A           98 VLESYQCNIRLLHEKYSIGNKKKVNSNLLGKALIHPSDPIFYPVQFVESLSDLLMDEPVSAPVIEVYTEHDIQHDITETI  177 (290)
T ss_dssp             HHHTSSCEEEEECSSCEEECCCCCCCHHHHHSCCCCCBTTTBCEEECSCHHHHHHHSCCCCSEEEEECCGGGHHHHHHHH
T ss_pred             HHHHcCceEEEEECCcEEeeccccchhhhhhhhccccccccccccccCCHHHHHhcCCCCceEEEEeCCHHHHHHHHHHH
Confidence            00000         0         0                          000000001111111  122222222211


Q ss_pred             cchHhhh--hcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           458 PELIPRI--IVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       458 ~~~~~~~--~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      ......+  ......+.++.|.  +|+.+++.++++    .+++++|||+.||++|++.||+|||||||.++
T Consensus       178 ~~~~~~~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~na~~~  249 (290)
T 3dnp_A          178 TKAFPAVDVIRVNDEKLNIVPKGVSKEAGLALVASELGLSMDDVVAIGHQYDDLPMIELAGLGVAMGNAVPE  249 (290)
T ss_dssp             HHHCTTEEEEEEETTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHH
T ss_pred             HhhCCcEEEEEeCCCeEEEEECCCCHHHHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcCCEEEecCCcHH
Confidence            0000000  0011113344453  799999999886    46899999999999999999999999999765

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=99.54  E-value=3.8e-15  Score=145.94  Aligned_cols=178  Identities=14%  Similarity=0.161  Sum_probs=109.3

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec-Ccchhh---
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS-GVSAIQ---  419 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~-~~~~~~---  419 (523)
                      +..+.++++++|++++++|++++++|||+...+..+.++++++.+..++++.||+.+.+.......+... +.+...   
T Consensus        20 ~~~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~~~l~l~~~~~~~I~~NGa~i~~~~~~~~i~~~~l~~~~~~~i~   99 (282)
T 1rkq_A           20 DHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLE   99 (282)
T ss_dssp             TSCCCHHHHHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCCSTTCEEEEGGGTEEEETTTCCEEEECCBCHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCCCCeEEEeCCeEEEECCCCeEEEEecCCHHHHHHHH
Confidence            3468899999999999999999999999999999999999987655689999998776532233333221 111110   


Q ss_pred             hhhhh--c-----------ccC----chh---------------hhhcc-CCCceEEEEec--ccHHHHHhhCcchHhh-
Q psy78           420 TKAKK--L-----------NYS----KTE---------------EELGL-SSGAYKFAVTG--KSWELIRDQMPELIPR-  463 (523)
Q Consensus       420 ~~~~~--~-----------~~~----~~~---------------~~~~~-~~~~~~l~i~~--~~~~~l~~~~~~~~~~-  463 (523)
                      .....  .           ...    ...               ..... ......+.+.+  +..+.+.+.....+.. 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~~  179 (282)
T 1rkq_A          100 KLSREVGSHFHALDRTTLYTANRDISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEK  179 (282)
T ss_dssp             HHHHHHTCEEEEECSSCEEECCSSCCHHHHHHHHHTTCCEEECCGGGSCTTCCBCEEEEECCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHcCCEEEEEECCEEEEcCCchhHHHHHHhhhccCCccccchhHhcccCCceEEEEECCHHHHHHHHHHHHHHhcCC
Confidence            00000  0           000    000               00000 00111122222  2233344433322211 


Q ss_pred             h--hcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           464 I--IVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       464 ~--~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +  ..+...+.++.|.  +|+.+++.+++.    .+++++|||+.||++|++.||+||||||+.++
T Consensus       180 ~~~~~s~~~~lei~~~~~~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va~~n~~~~  245 (282)
T 1rkq_A          180 YTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPS  245 (282)
T ss_dssp             EEEEEEETTEEEEEETTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHH
T ss_pred             EEEEEeCCceEEecCCCCCCHHHHHHHHHHhCCCHHHEEEECCcHHHHHHHHHCCcEEEecCCcHH
Confidence            1  1111123556665  899999999875    46899999999999999999999999998653

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=99.50  E-value=8.9e-15  Score=141.15  Aligned_cols=169  Identities=19%  Similarity=0.165  Sum_probs=98.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhhh--
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQTK--  421 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~~--  421 (523)
                      ..+.+.++++|++++++|++++++|||+...+..+.++++++.    +++.||..+...  ....+.. .+.+.....  
T Consensus        19 ~~i~~~~~~al~~l~~~G~~~~~aTGR~~~~~~~~~~~l~~~~----~i~~nGa~i~~~--~~~i~~~~~~~~~~~~i~~   92 (258)
T 2pq0_A           19 KQLPLSTIEAVRRLKQSGVYVAIATGRAPFMFEHVRKQLGIDS----FVSFNGQYVVFE--GNVLYKQPLRREKVRALTE   92 (258)
T ss_dssp             SCCCHHHHHHHHHHHHTTCEEEEECSSCGGGSHHHHHHHTCCC----EEEGGGTEEEET--TEEEEECCCCHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHCCCEEEEECCCChHHHHHHHHhcCCCE----EEECCCCEEEEC--CEEEEEecCCHHHHHHHHH
Confidence            4689999999999999999999999999999999999998752    677787755321  1122211 111111000  


Q ss_pred             -hhhcc-------cCc--------hh--------------h-h-hccCCCceEEEEeccc--HHHHHhhCcchHhhhhcc
Q psy78           422 -AKKLN-------YSK--------TE--------------E-E-LGLSSGAYKFAVTGKS--WELIRDQMPELIPRIIVK  467 (523)
Q Consensus       422 -~~~~~-------~~~--------~~--------------~-~-~~~~~~~~~l~i~~~~--~~~l~~~~~~~~~~~~~~  467 (523)
                       .....       ...        ..              . . .........+.+.++.  ...+.+..+. + .....
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~-~~~~~  170 (258)
T 2pq0_A           93 EAHKNGHPLVFMDAEKMRASIGDHPHIHVSMASLKFAHPPVDPLYYENKDIYQALLFCRAEEEEPYVRNYPE-F-RFVRW  170 (258)
T ss_dssp             HHHHTTCCEEEECSSCEEESSSSCHHHHHHHHHTTCCCCCBCTTGGGGSCCCEEEECSCHHHHHHHHHHCTT-E-EEEEE
T ss_pred             HHHhCCCeEEEEeCCcEEEecCCcHHHHHHHHhhcCCccccccchhhccCceEEEEECCHHHHHHHHHhCCC-e-EEEEe
Confidence             00000       000        00              0 0 0000112223333321  1112111110 0 00000


Q ss_pred             cEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           468 GAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       468 ~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      ...+.++.|.  +|+.+++.++++    .++++||||+.||++|++.||+|||||||.++
T Consensus       171 ~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~ia~GDs~NDi~ml~~ag~~vam~na~~~  230 (258)
T 2pq0_A          171 HDVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVGTGVAMGNAHEE  230 (258)
T ss_dssp             ETTEEEEEESSCCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHHHSSEEEEETTCCHH
T ss_pred             CCceEEEEECCCChHHHHHHHHHHhCCCHHHEEEECCcHHhHHHHHhCCcEEEeCCCcHH
Confidence            1112334443  899999999985    57899999999999999999999999998764

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=99.49  E-value=1.1e-14  Score=137.84  Aligned_cols=168  Identities=10%  Similarity=0.034  Sum_probs=99.7

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceE-EEecCcchhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVY-FTVSGVSAIQTKA  422 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~-~~~~~~~~~~~~~  422 (523)
                      ..+++++++++|++|+++|++++++|||+...+..+++++|++.   ++++.||+.+.... .... +...- +..... 
T Consensus        20 ~~~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~~~~~l~~~~---~~I~~NGa~i~~~~-~~~i~~~~~l-~~~~~i-   93 (227)
T 1l6r_A           20 DRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGING---PVFGENGGIMFDND-GSIKKFFSNE-GTNKFL-   93 (227)
T ss_dssp             TSCBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCCS---CEEEGGGTEEECTT-SCEEESSCSH-HHHHHH-
T ss_pred             CCcCCHHHHHHHHHHHHCCCEEEEECCCCcHHHHHHHHHhCCCC---eEEEeCCcEEEeCC-CCEEEEeccH-HHHHHH-
Confidence            45689999999999999999999999999999999999999853   58899998765432 2222 11100 000000 


Q ss_pred             hhccc---CchhhhhccCCCceE-EEE--ecccHHHHHhhCcchHhhhhcccEEEEcCCh--HhHHHHHHHHHHC----C
Q psy78           423 KKLNY---SKTEEELGLSSGAYK-FAV--TGKSWELIRDQMPELIPRIIVKGAIFARMSS--DQKQQLVLELQQL----G  490 (523)
Q Consensus       423 ~~~~~---~~~~~~~~~~~~~~~-l~i--~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p--~~K~~~i~~L~~~----~  490 (523)
                      ..+..   ............... ...  +.+..+.+.+.+ . + ... ....+.++.|  .+|+.+++.++++    .
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~-~~~~~~ei~~~~~~K~~~l~~l~~~~~~~~  169 (227)
T 1l6r_A           94 EEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESR-G-F-VIF-YSGYSWHLMNRGEDKAFAVNKLKEMYSLEY  169 (227)
T ss_dssp             HHHTTTSSCBCCGGGGGCSSSEEEBCCGGGHHHHHHHHHTT-T-E-EEE-EETTEEEEEETTCSHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHhcCCccccccceecccceEEecCCHHHHHHHHHhc-C-E-EEE-ecCcEEEEecCCCCHHHHHHHHHHHhCcCH
Confidence            00000   000000000000000 000  011112222211 0 0 000 1112345556  4899999999875    3


Q ss_pred             CEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           491 YYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       491 ~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +++++|||+.||++|++.||+||||||+.++
T Consensus       170 ~~~~~iGD~~nD~~m~~~ag~~va~~n~~~~  200 (227)
T 1l6r_A          170 DEILVIGDSNNDMPMFQLPVRKACPANATDN  200 (227)
T ss_dssp             GGEEEECCSGGGHHHHTSSSEEEECTTSCHH
T ss_pred             HHEEEECCcHHhHHHHHHcCceEEecCchHH
Confidence            6799999999999999999999999998653

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=99.49  E-value=5.5e-15  Score=146.20  Aligned_cols=177  Identities=14%  Similarity=0.052  Sum_probs=105.6

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHH--HHcC-ccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVA--KECG-IIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQ  419 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia--~~lg-i~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~  419 (523)
                      ...+.++++++|++|+++|++++++|||+...+..+.  ++++ ++.+..++++.||+.+... .....+.. .+.+...
T Consensus        43 ~~~is~~~~~al~~l~~~Gi~v~iaTGR~~~~~~~~~~~~~l~~~~~~~~~~I~~NGa~i~~~-~~~~i~~~~l~~~~~~  121 (301)
T 2b30_A           43 DIKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTIVYDQ-IGYTLLDETIETDVYA  121 (301)
T ss_dssp             TTCSCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCHHHHHHHTCCSCSEEEGGGTEEECT-TCCEEEECCCCHHHHH
T ss_pred             CCccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHhhHHhhcccccCCCeEEEcCCeEEEeC-CCCEEEEccCCHHHHH
Confidence            3568899999999999999999999999999999999  9999 8655467999999877653 22333322 1111111


Q ss_pred             h---hhhh--c-c---c--Cc---------h-hhh---------------hccCC-CceEEEE--ecccHHHHHhhCcch
Q psy78           420 T---KAKK--L-N---Y--SK---------T-EEE---------------LGLSS-GAYKFAV--TGKSWELIRDQMPEL  460 (523)
Q Consensus       420 ~---~~~~--~-~---~--~~---------~-~~~---------------~~~~~-~~~~l~i--~~~~~~~l~~~~~~~  460 (523)
                      .   ....  + .   .  ..         . ...               ..... ....+.+  ..+..+.+.+.+...
T Consensus       122 ~i~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ki~~~~~~~~~~~~~~~l~~~  201 (301)
T 2b30_A          122 ELISYLVEKNLVNQTIFHRGESNYVTEDNKYADFLQKMYSENRSIIIRHNEMLKYRTMNKLMIVLDPSESKTVIGNLKQK  201 (301)
T ss_dssp             HHHHHHHHTTCGGGEEEEETTEEEEETTCTTTTHHHHHHSCCCCEEECHHHHTTCCCCSEEEECCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCceEEEEEeCCEEEEcCchHHHHHHHHhhccCCceeecchhhhccCCceEEEEECCHHHHHHHHHHHHHH
Confidence            0   0000  0 0   0  00         0 000               00000 1111111  112222222211111


Q ss_pred             Hh---hhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           461 IP---RIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       461 ~~---~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +.   ....+...+.++.|.  +|+.+++.+.+.    .+++++|||+.||++|++.||+|||||||.++
T Consensus       202 ~~~~~~~~~s~~~~lei~~~~~~K~~~l~~l~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va~~na~~~  271 (301)
T 2b30_A          202 FKNKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFAVANATDS  271 (301)
T ss_dssp             STTTEEEEECTTSCEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHSCSEEEECTTCCHH
T ss_pred             hcCCEEEEEeCCcceEecCCCCCcHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCeEEEcCCcHH
Confidence            10   001111123445554  899999999875    46899999999999999999999999998653

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.49  E-value=1.1e-14  Score=141.15  Aligned_cols=169  Identities=15%  Similarity=0.198  Sum_probs=95.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCC-CCCCCCceEEEec-Ccchhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPG-GLKECPKVYFTVS-GVSAIQTKA  422 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~-~~~~~~~~~~~~~-~~~~~~~~~  422 (523)
                      ..+.+.++++|++++++|++++++|||+.... ...+++++    ..+++.||+.. ....  ...+... +.+......
T Consensus        29 ~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~-~~~~~l~~----~~~i~~nGa~i~~~~~--~~~~~~~l~~~~~~~i~  101 (268)
T 3r4c_A           29 HKVSQSSIDALKKVHDSGIKIVIATGRAASDL-HEIDAVPY----DGVIALNGAECVLRDG--SVIRKVAIPAQDFRKSM  101 (268)
T ss_dssp             CSCCHHHHHHHHHHHHTTCEEEEECSSCTTCC-GGGTTSCC----CEEEEGGGTEEEETTS--CEEEECCCCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHCCCEEEEEcCCChHHh-HHHHhcCC----CcEEEeCCcEEEEcCC--eEEEEecCCHHHHHHHH
Confidence            46899999999999999999999999998876 34455665    35788888876 5432  2222221 111111000


Q ss_pred             hhcccC-----------------chh-----------------hh-h--ccCCCceEEEEecccHHHHHhhCcchHhhhh
Q psy78           423 KKLNYS-----------------KTE-----------------EE-L--GLSSGAYKFAVTGKSWELIRDQMPELIPRII  465 (523)
Q Consensus       423 ~~~~~~-----------------~~~-----------------~~-~--~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~  465 (523)
                      ......                 ...                 .. .  .....+.......+....+.+..+..  ...
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  179 (268)
T 3r4c_A          102 ELAREFDFAVALELNEGVFVNRLTPTVEQIAGIVEHPVPPVVDIEEMFERKECCQLCFYFDEEAEQKVMPLLSGL--SAT  179 (268)
T ss_dssp             HHHHHTTCEEEEEETTEEEESCCCHHHHHHHHHHTCCCCCBCCHHHHHHHSCCCCEEEECCHHHHHHHGGGCTTE--EEE
T ss_pred             HHHHHcCcEEEEEECCEEEEeCCcHHHHHHHHHcCCCCCcccchHHHhccCceEEEEEecChHHHHHHHHhCCCc--EEE
Confidence            000000                 000                 00 0  00000111111111111111111100  000


Q ss_pred             cccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           466 VKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       466 ~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      .....+.++.|.  +|+.+++.++++    .++++||||+.||++|++.||+|||||||.+++
T Consensus       180 ~~~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~ia~GD~~NDi~m~~~ag~~vam~na~~~~  242 (268)
T 3r4c_A          180 RWHPLFADVNVAGTSKATGLSLFADYYRVKVSEIMACGDGGNDIPMLKAAGIGVAMGNASEKV  242 (268)
T ss_dssp             EEETTEEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHHH
T ss_pred             EecCCeEEEeeCCCCHHHHHHHHHHHcCCCHHHEEEECCcHHhHHHHHhCCCeEEeCCCcHHH
Confidence            011113444454  899999999986    468999999999999999999999999998653

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=99.48  E-value=5.3e-15  Score=141.28  Aligned_cols=163  Identities=10%  Similarity=0.075  Sum_probs=93.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe--cCcchhhh-hh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV--SGVSAIQT-KA  422 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~--~~~~~~~~-~~  422 (523)
                      .+.++++++|++|+++| +++++|||+...+..+.+++      .++++.||+.+..  .....+..  .....+.. ..
T Consensus        23 ~i~~~~~~al~~l~~~g-~v~iaTGR~~~~~~~~~~~l------~~~I~~nGa~i~~--~~~~~~~~~~~~~~~l~~~~~   93 (239)
T 1u02_A           23 YADAGLLSLISDLKERF-DTYIVTGRSPEEISRFLPLD------INMICYHGACSKI--NGQIVYNNGSDRFLGVFDRIY   93 (239)
T ss_dssp             CCCHHHHHHHHHHHHHS-EEEEECSSCHHHHHHHSCSS------CEEEEGGGTEEEE--TTEEEECTTGGGGHHHHHHHH
T ss_pred             CCCHHHHHHHHHHhcCC-CEEEEeCCCHHHHHHHhccc------hheEEECCEEEee--CCeeeecccccccchhhHHHH
Confidence            68899999999999999 99999999999998886654      3788999987654  22222110  00000000 00


Q ss_pred             hhcccC---chhhhhccCCCceEEEEe---c---ccHHHHHhhCcchHhhh-hcccEEEEcCChH--hHHHHHHHHHHCC
Q psy78           423 KKLNYS---KTEEELGLSSGAYKFAVT---G---KSWELIRDQMPELIPRI-IVKGAIFARMSSD--QKQQLVLELQQLG  490 (523)
Q Consensus       423 ~~~~~~---~~~~~~~~~~~~~~l~i~---~---~~~~~l~~~~~~~~~~~-~~~~~v~~~~~p~--~K~~~i~~L~~~~  490 (523)
                      ..+...   ............+.....   .   +..+.+.+..... ..+ +.....+.++.|.  +|+.+++.|+++.
T Consensus        94 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~lei~~~~~~Kg~al~~l~~~~  172 (239)
T 1u02_A           94 EDTRSWVSDFPGLRIYRKNLAVLYHLGLMGADMKPKLRSRIEEIARI-FGVETYYGKMIIELRVPGVNKGSAIRSVRGER  172 (239)
T ss_dssp             HHHTTHHHHSTTCEEEEETTEEEEECTTSCSTTHHHHHHHHHHHHHH-HTCEEEECSSEEEEECTTCCHHHHHHHHHTTS
T ss_pred             HHHHHHHhhCCCcEEEecCCEEEEEcCCCChhHHHHHHHHHHHHhcc-CCcEEEeCCcEEEEEcCCCCHHHHHHHHHhhC
Confidence            000000   000000000000100000   0   0111111111110 011 1111224556665  8999999999984


Q ss_pred             CEEEEEcCChhhHHHHHhC--CccEEecccC
Q psy78           491 YYVAMCGDGANDCGALRAA--HAGISLSEAE  519 (523)
Q Consensus       491 ~~V~a~GDG~ND~~MLk~A--~vGIAMgna~  519 (523)
                      . |++|||+.||++||+.|  |+|||||||.
T Consensus       173 g-via~GD~~ND~~Ml~~a~~g~~vam~Na~  202 (239)
T 1u02_A          173 P-AIIAGDDATDEAAFEANDDALTIKVGEGE  202 (239)
T ss_dssp             C-EEEEESSHHHHHHHHTTTTSEEEEESSSC
T ss_pred             C-eEEEeCCCccHHHHHHhhCCcEEEECCCC
Confidence            4 99999999999999999  9999999994

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=99.47  E-value=1e-14  Score=141.66  Aligned_cols=170  Identities=15%  Similarity=0.168  Sum_probs=99.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec-Ccchhhh---
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS-GVSAIQT---  420 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~-~~~~~~~---  420 (523)
                      ..+.+.++++|++++++|++++++|||+...+..+.++++++    .+++.||.....  .....+... +.+....   
T Consensus        21 ~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~~~~~----~~i~~nGa~i~~--~~~~~~~~~l~~~~~~~i~~   94 (274)
T 3fzq_A           21 YGIPESAKHAIRLCQKNHCSVVICTGRSMGTIQDDVLSLGVD----GYIAGGGNYIQY--HGELLYNQSFNQRLIKEVVC   94 (274)
T ss_dssp             TBCCHHHHHHHHHHHHTTCEEEEECSSCTTTSCHHHHTTCCS----EEEETTTTEEEE--TTEEEEECCCCHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCC----EEEecCccEEEE--CCEEEEEcCCCHHHHHHHHH
Confidence            358999999999999999999999999999999999988875    367777766542  122222211 1111110   


Q ss_pred             hhhhcccC------------c-------------------------------hhhhhccCCCceEEEEecc--cHHHHHh
Q psy78           421 KAKKLNYS------------K-------------------------------TEEELGLSSGAYKFAVTGK--SWELIRD  455 (523)
Q Consensus       421 ~~~~~~~~------------~-------------------------------~~~~~~~~~~~~~l~i~~~--~~~~l~~  455 (523)
                      ........            .                               .............+.+...  ..+.+.+
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~  174 (274)
T 3fzq_A           95 LLKKREVAFSIESQEKVFMNQKAKEIFETMNQLKGTNSCINKQHIQEKITYENNIEEYKSQDIHKICLWSNEKVFDEVKD  174 (274)
T ss_dssp             HHHHHTCEEEEECSSCEEECHHHHHHHHHHHHTTTSCCTTHHHHCCSSSCCCCCGGGCSSCCCCEEEEECCHHHHHHHHH
T ss_pred             HHHHCCceEEEEeCCceEeCCchHHHHHHHHhhhccchhhhhhhhhhhcccccchhhhcccCeEEEEEEcCHHHHHHHHH
Confidence            00000000            0                               0000000111122222211  1222222


Q ss_pred             hCcchHhhhhcccE--EEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           456 QMPELIPRIIVKGA--IFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       456 ~~~~~~~~~~~~~~--v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      .+...+ .......  .+.++.|.  +|+.+++.++++    .+++++|||+.||++|++.||+|||||||.++
T Consensus       175 ~l~~~~-~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~na~~~  247 (274)
T 3fzq_A          175 ILQDKM-ELAQRDISSQYYEIIQKDFHKGKAIKRLQERLGVTQKETICFGDGQNDIVMFQASDVTIAMKNSHQQ  247 (274)
T ss_dssp             HHGGGE-EEEEEEGGGTEEEEEETTCSHHHHHHHHHHHHTCCSTTEEEECCSGGGHHHHHTCSEEEEETTSCHH
T ss_pred             Hhhcce-EEEeccCCCceEEEeeCCCCHHHHHHHHHHHcCCCHHHEEEECCChhHHHHHHhcCceEEecCccHH
Confidence            222111 0000000  12234443  799999999886    57899999999999999999999999999765

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=99.47  E-value=8.6e-14  Score=133.66  Aligned_cols=168  Identities=13%  Similarity=0.113  Sum_probs=97.2

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCC------------CceEEE
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKEC------------PKVYFT  411 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~------------~~~~~~  411 (523)
                      .+...++++++|++|+++|++++++|||+...+..+.+++|++   .++++.||+.+.....            ....+.
T Consensus        15 ~~~~~~~~~~~l~~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~~---~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~i~~   91 (249)
T 2zos_A           15 PGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVE---TPFISENGSAIFIPKGYFPFDVKGKEVGNYIVIE   91 (249)
T ss_dssp             TTSCSGGGHHHHHHHHHTTEEEEEBCSSCHHHHHHHHHHHTCC---SCEEETTTTEEECCTTCCC------CCCCCCEEE
T ss_pred             CCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC---ccEEEeCCeEEEccCCcccccccccccCceEEEe
Confidence            3433355999999999999999999999999999999999885   3688899887654321            222222


Q ss_pred             e-cCcchhhh---hhhh---cc-cCc---hhh-h----------h-ccCCCceEEEEecc-c-HHHHHhhCcchHhhhhc
Q psy78           412 V-SGVSAIQT---KAKK---LN-YSK---TEE-E----------L-GLSSGAYKFAVTGK-S-WELIRDQMPELIPRIIV  466 (523)
Q Consensus       412 ~-~~~~~~~~---~~~~---~~-~~~---~~~-~----------~-~~~~~~~~l~i~~~-~-~~~l~~~~~~~~~~~~~  466 (523)
                      . .+......   ....   +. ...   ... .          . ........+...+. . .+.+.+ . . + ....
T Consensus        92 ~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~-~-~~~~  167 (249)
T 2zos_A           92 LGIRVEKIREELKKLENIYGLKYYGNSTKEEIEKFTGMPPELVPLAMEREYSETIFEWSRDGWEEVLVE-G-G-F-KVTM  167 (249)
T ss_dssp             CSCCHHHHHHHHHHHHHHHTCEEGGGSCHHHHHHHHCCCTTTHHHHHCCSSCEEEEECSSSCHHHHHHH-T-T-C-EEEE
T ss_pred             cCCCHHHHHHHHHHHHhhcCEEEecCCCHHHHHHHhCCChhHhhhhhhhhhcCceEecCCHHHHHHHHh-C-C-E-EEEe
Confidence            2 12111110   0000   00 000   000 0          0 00000111222221 1 111211 0 0 0 0000


Q ss_pred             ccEEEEcCCh-HhHHHHHHHHHHC-----CCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           467 KGAIFARMSS-DQKQQLVLELQQL-----GYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       467 ~~~v~~~~~p-~~K~~~i~~L~~~-----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                      . ..+.++.| .+|+.+++.++++     .++|+||||+.||++||+.||+|||||||.
T Consensus       168 s-~~~~ei~~g~sKg~al~~l~~~~~~~~~~~viafGD~~NDi~Ml~~ag~~va~gna~  225 (249)
T 2zos_A          168 G-SRFYTVHGNSDKGKAAKILLDFYKRLGQIESYAVGDSYNDFPMFEVVDKVFIVGSLK  225 (249)
T ss_dssp             C-SSSEEEECSCCHHHHHHHHHHHHHTTSCEEEEEEECSGGGHHHHTTSSEEEEESSCC
T ss_pred             c-CCeEEEeCCCChHHHHHHHHHHhccCCCceEEEECCCcccHHHHHhCCcEEEeCCCC
Confidence            0 01223333 4799999999875     368999999999999999999999999998

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=99.44  E-value=1.6e-14  Score=142.96  Aligned_cols=173  Identities=12%  Similarity=0.117  Sum_probs=100.8

Q ss_pred             cCCCcc-hHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec-Ccchhhh--
Q psy78           345 NRLKPQ-TEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS-GVSAIQT--  420 (523)
Q Consensus       345 d~lr~~-t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~-~~~~~~~--  420 (523)
                      ..+.+. ++++|++++++|+.++++|||+...+..+.+++++.   .++++.||+.+..  .....+... +.+....  
T Consensus        53 ~~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~i~~nGa~i~~--~~~~i~~~~l~~~~~~~i~  127 (304)
T 3l7y_A           53 GSYDHNRFQRILKQLQERDIRFVVASSNPYRQLREHFPDCHEQ---LTFVGENGANIIS--KNQSLIEVFQQREDIASII  127 (304)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHTTCTTTGGG---SEEEEGGGTEEEE--TTEEEEECCCCHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhCCC---CcEEeCCCcEEEE--CCEEEEEecCCHHHHHHHH
Confidence            347777 899999999999999999999999998887777653   5788888876532  222222221 1111111  


Q ss_pred             -hhhh-c-cc--------------C-chh-----------------hhhccCCCceEEEEe--cccHHHHHhhCcchHhh
Q psy78           421 -KAKK-L-NY--------------S-KTE-----------------EELGLSSGAYKFAVT--GKSWELIRDQMPELIPR  463 (523)
Q Consensus       421 -~~~~-~-~~--------------~-~~~-----------------~~~~~~~~~~~l~i~--~~~~~~l~~~~~~~~~~  463 (523)
                       .... . ..              . ...                 ...........+.+.  .+..+.+.+.+...+..
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~  207 (304)
T 3l7y_A          128 YFIEEKYPQAVIALSGEKKGYLKKGVSENIVKMLSPFFPVLELVNSFSPLPDERFFKLTLQVKEEESAQIMKAIADYKTS  207 (304)
T ss_dssp             HHHHHHCTTSEEEEEESSCEEEETTSCHHHHHHHTTSCSSEEEESCCSSCC-CCEEEEEEECCGGGHHHHHHHHHTSTTT
T ss_pred             HHHHHhcCCeEEEEEcCCCEeeeCCCCHHHHHHHHHHhccceecCCHHHcCcCCeEEEEEEcCHHHHHHHHHHHHHhcCC
Confidence             0000 0 00              0 000                 000001111222222  22233333222111111


Q ss_pred             ----hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           464 ----IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       464 ----~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                          .......+.++.|.  +|+.+++.++++    .+++++|||+.||++|++.||+|||||||.+++
T Consensus       208 ~~~~~~~s~~~~~ei~~~~~~K~~al~~l~~~lgi~~~e~i~~GDs~NDi~m~~~ag~~vam~na~~~~  276 (304)
T 3l7y_A          208 QRLVGTASGFGYIDIITKGLHKGWALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMANAPKNV  276 (304)
T ss_dssp             TTEEEEECSTTEEEEEETTCSHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHCTEEEECTTSCHHH
T ss_pred             CeEEEEEcCCceEEEEcCCCCHHHHHHHHHHHhCcCHHHEEEECCCHHHHHHHHhcCCeEEcCCcCHHH
Confidence                11111123444454  799999999886    478999999999999999999999999998653

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=99.44  E-value=3.9e-14  Score=137.62  Aligned_cols=174  Identities=13%  Similarity=0.110  Sum_probs=102.1

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhh--
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQT--  420 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~--  420 (523)
                      ...+.++++++|++ +++|++++++|||+...+..+.+++|++.  .++++.||+.+... .....+.. .+.+....  
T Consensus        17 ~~~i~~~~~~al~~-~~~Gi~v~iaTGR~~~~~~~~~~~l~~~~--~~~I~~NGa~i~~~-~~~~i~~~~l~~~~~~~i~   92 (268)
T 1nf2_A           17 NLEISEKDRRNIEK-LSRKCYVVFASGRMLVSTLNVEKKYFKRT--FPTIAYNGAIVYLP-EEGVILNEKIPPEVAKDII   92 (268)
T ss_dssp             TSCCCHHHHHHHHH-HTTTSEEEEECSSCHHHHHHHHHHHSSSC--CCEEEGGGTEEEET-TTEEEEECCBCHHHHHHHH
T ss_pred             CCccCHHHHHHHHH-HhCCCEEEEECCCChHHHHHHHHHhCCCC--CeEEEeCCeEEECC-CCCEEEecCCCHHHHHHHH
Confidence            34588999999999 99999999999999999999999999853  26899999876543 22333321 11111110  


Q ss_pred             -hhhhccc-------------Cc--h----------------hhhhcc-CCCceEEEEec--ccHHHHHhhCcchHhh--
Q psy78           421 -KAKKLNY-------------SK--T----------------EEELGL-SSGAYKFAVTG--KSWELIRDQMPELIPR--  463 (523)
Q Consensus       421 -~~~~~~~-------------~~--~----------------~~~~~~-~~~~~~l~i~~--~~~~~l~~~~~~~~~~--  463 (523)
                       .......             ..  .                ...... ......+.+.+  +..+.+.+.+...+..  
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~~~  172 (268)
T 1nf2_A           93 EYIKPLNVHWQAYIDDVLYSEKDNEEIKSYARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDELKEILSERFKDVV  172 (268)
T ss_dssp             HHHGGGCCCEEEECSSCEEESSCCHHHHHHHHHTTCCEEECTTHHHHHHHHCBSEEEEECCHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHhCCCEEEEEECCEEEECCChHHHHHHHhhcCCceEecCCHHHhcccCCceEEEEECCHHHHHHHHHHHHHHhcCCE
Confidence             0000000             00  0                000000 00111112211  1122222211111100  


Q ss_pred             -hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           464 -IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       464 -~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                       .......+.++.|.  +|+.+++.+.++    .+++++|||+.||++|++.||+||||||+.++
T Consensus       173 ~~~~s~~~~~ei~~~~~~K~~~~~~~~~~~~~~~~~~~~~GD~~nD~~~~~~ag~~v~~~n~~~~  237 (268)
T 1nf2_A          173 KVFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEK  237 (268)
T ss_dssp             EEEEEETTEEEEECTTCCHHHHHHHHHHHHTCCGGGEEEEECSHHHHHHHTTCSEEEECTTSCHH
T ss_pred             EEEEecCceEEEeCCCCChHHHHHHHHHHcCCCHHHeEEEcCchhhHHHHHHcCCEEEecCCCHH
Confidence             00011113455555  899999999885    46899999999999999999999999998654

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=99.43  E-value=2.6e-15  Score=148.27  Aligned_cols=120  Identities=13%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhh
Q psy78           343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKA  422 (523)
Q Consensus       343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~  422 (523)
                      ...+++|+++++++.|+++|++++|+||+...++.++++++|++.++..+.. |.....+.   ..              
T Consensus       138 ~~i~l~~g~~e~i~~l~~~gi~v~ivSgg~~~~i~~i~~~~g~~~~~~~i~~-n~l~~~~~---~~--------------  199 (297)
T 4fe3_A          138 SDVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVS-NFMDFDEN---GV--------------  199 (297)
T ss_dssp             SCCCBCBTHHHHHHHHHHTTCCEEEEEEEEHHHHHHHHHHTTCCCTTEEEEE-ECEEECTT---SB--------------
T ss_pred             cCCCCCCcHHHHHHHHHHcCCeEEEEeCCcHHHHHHHHHHcCCCcccceEEe-eeEEEccc---ce--------------
Confidence            3578999999999999999999999999999999999999999754433322 21110000   00              


Q ss_pred             hhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhh
Q psy78           423 KKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGAND  502 (523)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND  502 (523)
                                         .....++.                  ...+++..|.+|...+..+++.++.|+|+|||.||
T Consensus       200 -------------------~~~~~~~~------------------i~~~~k~~~~~k~~~~~~~~~~~~~v~~vGDGiND  242 (297)
T 4fe3_A          200 -------------------LKGFKGEL------------------IHVFNKHDGALKNTDYFSQLKDNSNIILLGDSQGD  242 (297)
T ss_dssp             -------------------EEEECSSC------------------CCTTCHHHHHHTCHHHHHHTTTCCEEEEEESSGGG
T ss_pred             -------------------eEeccccc------------------cchhhcccHHHHHHHHHHhhccCCEEEEEeCcHHH
Confidence                               00000000                  01233445667888888888889999999999999


Q ss_pred             HHHHH---hCCccEEecc
Q psy78           503 CGALR---AAHAGISLSE  517 (523)
Q Consensus       503 ~~MLk---~A~vGIAMgn  517 (523)
                      ++|++   .|++|||||=
T Consensus       243 a~m~k~l~~advgiaiGf  260 (297)
T 4fe3_A          243 LRMADGVANVEHILKIGY  260 (297)
T ss_dssp             GGTTTTCSCCSEEEEEEE
T ss_pred             HHHHhCccccCeEEEEEe
Confidence            99954   8999999993

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=99.39  E-value=1.2e-13  Score=134.68  Aligned_cols=172  Identities=13%  Similarity=0.126  Sum_probs=100.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCC-CCCCC---c-eEEE-ecCcchh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG-LKECP---K-VYFT-VSGVSAI  418 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~-~~~~~---~-~~~~-~~~~~~~  418 (523)
                      +.+.++++++|++|+++|++++++|||+...+..+.++++++.  .++++.||+.+. .....   . ..+. ..+....
T Consensus        25 ~~~~~~~~~~l~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~~--~~~I~~NGa~i~~~~~~~~~~~~~~~~~~l~~~~~  102 (275)
T 1xvi_A           25 SYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQG--LPLIAENGAVIQLAEQWQEIDGFPRIISGISHGEI  102 (275)
T ss_dssp             CCSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHTTCTT--SCEEEGGGTEEECCTTCTTSTTTTEEECSSCHHHH
T ss_pred             CcCCHHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCCC--CeEEEeCCCeEEecCcccccCceEEEecCCCHHHH
Confidence            4467889999999999999999999999999999999999853  368999998764 32111   1 1222 2221111


Q ss_pred             h---hhh-h--hcccCch----h--h-h----------h-ccCCCceEEEEec--ccHHHHHhhCcchHhhhhcccEEEE
Q psy78           419 Q---TKA-K--KLNYSKT----E--E-E----------L-GLSSGAYKFAVTG--KSWELIRDQMPELIPRIIVKGAIFA  472 (523)
Q Consensus       419 ~---~~~-~--~~~~~~~----~--~-~----------~-~~~~~~~~l~i~~--~~~~~l~~~~~~~~~~~~~~~~v~~  472 (523)
                      .   ... .  .......    .  . .          . ........+....  +..+.+.+.....-...... ..+.
T Consensus       103 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~l  181 (275)
T 1xvi_A          103 SLVLNTLREKEHFKFTTFDDVDDATIAEWTGLSRSQAALTQLHEASVTLIWRDSDERMAQFTARLNELGLQFMQG-ARFW  181 (275)
T ss_dssp             HHHHHHHHHHHCCCEEEGGGSCHHHHHHHHCCCHHHHHHHHCCSSCEEEEECSCHHHHHHHHHHHHHTTEEEEEC-SSCE
T ss_pred             HHHHHHHHHhhCcceeccCcCCHHHHHHhhCCchHHHHHHHhhccCceeEecCCHHHHHHHHHHHHhhCeEEEEC-CceE
Confidence            1   100 0  0000000    0  0 0          0 0001111222222  12222222211100001111 1234


Q ss_pred             cCChH--hHHHHHHHHHHC-----CCE--EEEEcCChhhHHHHHhCCccEEecccC
Q psy78           473 RMSSD--QKQQLVLELQQL-----GYY--VAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       473 ~~~p~--~K~~~i~~L~~~-----~~~--V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                      ++.|.  +|+.+++.+.++     .++  +++|||+.||++|++.||+||||+||.
T Consensus       182 eI~~~~~~K~~~l~~l~~~~~~~~~~~~~~~~~GD~~nD~~m~~~ag~~va~~n~~  237 (275)
T 1xvi_A          182 HVLDASAGKDQAANWIIATYQQLSGKRPTTLGLGDGPNDAPLLEVMDYAVIVKGLN  237 (275)
T ss_dssp             EEEETTCCHHHHHHHHHHHHHHHHSSCCEEEEEESSGGGHHHHHTSSEEEECCCCC
T ss_pred             EEecCCCCHHHHHHHHHHHhhhcccccCcEEEECCChhhHHHHHhCCceEEecCCC
Confidence            55555  799999988764     346  999999999999999999999999997

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=99.38  E-value=2.8e-13  Score=130.78  Aligned_cols=167  Identities=13%  Similarity=0.083  Sum_probs=94.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCC----------ceEEEec-C
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECP----------KVYFTVS-G  414 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~----------~~~~~~~-~  414 (523)
                      .+.+.++++|++++++|++++++|||+...+.    ++|+.   .+++..||+.+......          ....... .
T Consensus        16 ~i~~~~~~al~~l~~~Gi~v~iaTGR~~~~~~----~l~~~---~~~i~~nGa~i~~~~~~~~~~~~~~~~~~~~~~~~~   88 (259)
T 3zx4_A           16 GELGPAREALERLRALGVPVVPVTAKTRKEVE----ALGLE---PPFIVENGGGLYLPRDWPVRAGRPKGGYRVVSLAWP   88 (259)
T ss_dssp             SSCSTTHHHHHHHHHTTCCEEEBCSSCHHHHH----HTTCC---SSEEEGGGTEEEEETTCSSCCSEEETTEEEEECSCC
T ss_pred             cCCHHHHHHHHHHHHCCCeEEEEeCCCHHHHH----HcCCC---CcEEEECCcEEEeCCCCcccccccCCceEEEEcCCC
Confidence            68899999999999999999999999998886    77763   46788888765543332          1222211 1


Q ss_pred             cchhhhh---hhh-c--ccCchh-----------------hhh-ccCCCceEEEEecccHHHHHhhCcchHhhhhcccEE
Q psy78           415 VSAIQTK---AKK-L--NYSKTE-----------------EEL-GLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAI  470 (523)
Q Consensus       415 ~~~~~~~---~~~-~--~~~~~~-----------------~~~-~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v  470 (523)
                      .+.....   ... .  ......                 ... ........+....+..+.+.+.+...-........ 
T Consensus        89 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~s~~-  167 (259)
T 3zx4_A           89 YRKVRARLREAEALAGRPILGYGDLTAEAVARLTGLSREAARRAKAREYDETLVLCPEEVEAVLEALEAVGLEWTHGGR-  167 (259)
T ss_dssp             HHHHHHHHHHHHHHHTSCCCBGGGBCHHHHHHHHCCCHHHHHHHTCCSSCEEBCCCTTTHHHHHHHHHHTTCEEEECSS-
T ss_pred             HHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHcCCCHHHhhhhhccccceeEEeCcHHHHHHHHHHHHCCcEEEecCc-
Confidence            1111110   000 0  000000                 000 00000011111111222222221110000111111 


Q ss_pred             EEcCCh-HhHHHHHHHHHHC----C--CEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           471 FARMSS-DQKQQLVLELQQL----G--YYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       471 ~~~~~p-~~K~~~i~~L~~~----~--~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      +.++.| .+|+.+++.++++    .  +++++|||+.||++|++.||+||||+||.+
T Consensus       168 ~~ei~~~~~K~~~l~~l~~~~~i~~~~~~~~~~GD~~nD~~m~~~ag~~va~~na~~  224 (259)
T 3zx4_A          168 FYHAAKGADKGRAVARLRALWPDPEEARFAVGLGDSLNDLPLFRAVDLAVYVGRGDP  224 (259)
T ss_dssp             SEEEESSCCHHHHHHHHHHTCSSHHHHTSEEEEESSGGGHHHHHTSSEEEECSSSCC
T ss_pred             eEEEcCCCCHHHHHHHHHHHhCCCCCCceEEEEeCCHHHHHHHHhCCCeEEeCChhh
Confidence            112222 5899999999987    3  889999999999999999999999999987

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=99.38  E-value=7.6e-14  Score=135.76  Aligned_cols=172  Identities=17%  Similarity=0.121  Sum_probs=97.6

Q ss_pred             cCCCcch-HHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhh--
Q psy78           345 NRLKPQT-EGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQT--  420 (523)
Q Consensus       345 d~lr~~t-~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~--  420 (523)
                      ..+.+++ +++|++|+++|++++++|||+...+.++.+++++   ..++++.||+.+...  ....+.. .+.+....  
T Consensus        19 ~~i~~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~---~~~~I~~NGa~i~~~--~~~i~~~~l~~~~~~~i~   93 (271)
T 1rlm_A           19 KTYNQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKD---EISFVAENGALVYEH--GKQLFHGELTRHESRIVI   93 (271)
T ss_dssp             SCCCHHHHHHHHHHHHHHTCEEEEECSSCHHHHGGGCTTTTT---TSEEEEGGGTEEEET--TEEEEECCCCHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHhcCC---CCEEEECCccEEEEC--CeEEEEecCCHHHHHHHH
Confidence            4578885 9999999999999999999999998888777664   346888888765421  1222221 11111100  


Q ss_pred             -hhhhc------------------------------ccCchhhhh--ccCCCceEEEE-e-cccHHHHHhhCcchHhh--
Q psy78           421 -KAKKL------------------------------NYSKTEEEL--GLSSGAYKFAV-T-GKSWELIRDQMPELIPR--  463 (523)
Q Consensus       421 -~~~~~------------------------------~~~~~~~~~--~~~~~~~~l~i-~-~~~~~~l~~~~~~~~~~--  463 (523)
                       .....                              .........  ........+.+ + .+....+.+.....+..  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~i~~~~~~~~~~~~~l~~~~~~~~  173 (271)
T 1rlm_A           94 GELLKDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIM  173 (271)
T ss_dssp             HHHHTCTTCEEEEEESSCEEEETTSCHHHHHHHHTTCSSEEEESCGGGCCSCEEEEEEECCGGGHHHHHHHHHHHTTTSS
T ss_pred             HHHHhCCCccEEEEeCCCEEeeCCCCHHHHHHHHHhCCCCEEeCchhhCCCceEEEEEEcCHHHHHHHHHHHHHHcCCcE
Confidence             00000                              000000000  00111222222 2 22233222221111111  


Q ss_pred             -hhcccEEEEcCCh--HhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           464 -IIVKGAIFARMSS--DQKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       464 -~~~~~~v~~~~~p--~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                       .......+.++.|  .+|+.+++.++++    .+++++|||+.||++|++.||+|||||||.++
T Consensus       174 ~~~~s~~~~~ei~~~~~~K~~~~~~l~~~l~i~~~~~~~~GD~~nD~~m~~~ag~~va~~na~~~  238 (271)
T 1rlm_A          174 KPVTSGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAEN  238 (271)
T ss_dssp             EEEECSTTEEEEECTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHCSEEEECTTCCHH
T ss_pred             EEEeccCCeEEEEcCCCChHHHHHHHHHHhCCCHHHEEEECCcHHHHHHHHHcCCeEEeCCccHH
Confidence             0111111223334  3899999999886    46899999999999999999999999998754

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=99.35  E-value=2.1e-13  Score=133.92  Aligned_cols=56  Identities=16%  Similarity=0.222  Sum_probs=48.2

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGL  402 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~  402 (523)
                      +..+.+.++++|++++++|++++++|||+...+..+.++++++   .++++.||+.+..
T Consensus        19 ~~~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~~~~~l~~~---~~~I~~NGa~i~~   74 (288)
T 1nrw_A           19 KHQVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIK---TWVISANGAVIHD   74 (288)
T ss_dssp             TSCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGTCC---CEEEEGGGTEEEC
T ss_pred             CCccCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC---CcEEEcCCeEEEc
Confidence            3458899999999999999999999999999999999888874   3588888876554

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=99.34  E-value=2.8e-14  Score=136.62  Aligned_cols=171  Identities=15%  Similarity=0.201  Sum_probs=94.9

Q ss_pred             cchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe---cCc--chhhhhhh
Q psy78           349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV---SGV--SAIQTKAK  423 (523)
Q Consensus       349 ~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~---~~~--~~~~~~~~  423 (523)
                      +.++++|++++ +|++++++|||+...+..+.+++++..+ .++++.||+.+.........+..   ...  ........
T Consensus        22 ~~~~~~l~~~~-~gi~v~iaTGR~~~~~~~~~~~l~l~~~-~~~I~~NGa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (244)
T 1s2o_A           22 EHLQEYLGDRR-GNFYLAYATGRSYHSARELQKQVGLMEP-DYWLTAVGSEIYHPEGLDQHWADYLSEHWQRDILQAIAD   99 (244)
T ss_dssp             HHHHHHHHTTG-GGEEEEEECSSCHHHHHHHHHHHTCCCC-SEEEETTTTEEEETTEECHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHhc-CCCEEEEEcCCCHHHHHHHHHHcCCCCC-CEEEECCCcEEEeCCCcChHHHHHHhccccHHHHHHHHH
Confidence            57788888865 6899999999999999999999988532 57889999865432100000000   000  00000000


Q ss_pred             hcccCchhhhhccCCCceEEEEeccc----HHHHHhhCcch--HhhhhcccEEEEcCChH--hHHHHHHHHHHC----CC
Q psy78           424 KLNYSKTEEELGLSSGAYKFAVTGKS----WELIRDQMPEL--IPRIIVKGAIFARMSSD--QKQQLVLELQQL----GY  491 (523)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~i~~~~----~~~l~~~~~~~--~~~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~  491 (523)
                      ................+..+....+.    .+.+.+.....  -.....+...+.++.|.  +|+.+++.+.++    .+
T Consensus       100 ~~~~~~~~~~~~~~~~ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~~~lei~~~~~~K~~~l~~l~~~~~~~~~  179 (244)
T 1s2o_A          100 GFEALKPQSPLEQNPWKISYHLDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNATQYLQQHLAMEPS  179 (244)
T ss_dssp             TCTTEEECCGGGCBTTBEEEEECTTSCTHHHHHHHHHHHTSSCCEEEEEETTTEEEEEETTCSHHHHHHHHHHHTTCCGG
T ss_pred             hccCccccCcccCCCeEEEEEeChhhHHHHHHHHHHHHHhcCCCeEEEEecCceEEeccCCCChHHHHHHHHHHhCCCHH
Confidence            00000000000011122222223222    11222111100  00011111124455565  899999999986    36


Q ss_pred             EEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           492 YVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       492 ~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      ++++|||+.||++|++.||+|||||||.++
T Consensus       180 ~~~~~GD~~nD~~m~~~~g~~va~~na~~~  209 (244)
T 1s2o_A          180 QTLVCGDSGNDIGLFETSARGVIVRNAQPE  209 (244)
T ss_dssp             GEEEEECSGGGHHHHTSSSEEEECTTCCHH
T ss_pred             HEEEECCchhhHHHHhccCcEEEEcCCcHH
Confidence            799999999999999999999999998754

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=99.31  E-value=9.4e-13  Score=124.86  Aligned_cols=167  Identities=13%  Similarity=0.133  Sum_probs=96.7

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK  423 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (523)
                      +..+.++++++|++++++|++++++|||+...+..+.+.+|++.   ++++.||+.... . ....+...- +.......
T Consensus        18 ~~~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~~---~~i~~nGa~i~~-~-~~~~~~~~l-~~~~~i~~   91 (231)
T 1wr8_A           18 NRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSG---PVVAEDGGAISY-K-KKRIFLASM-DEEWILWN   91 (231)
T ss_dssp             TSCBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCS---CEEEGGGTEEEE-T-TEEEESCCC-SHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHcCCCC---eEEEeCCcEEEe-C-CEEEEeccH-HHHHHHHH
Confidence            34588999999999999999999999999999999999998753   477888765432 1 111111111 11111000


Q ss_pred             hcc-----cCchhhhhccCCCceEEEEe-c---ccHHHHHhhCcchHhhhhcccEEEEcCCh--HhHHHHHHHHHHC---
Q psy78           424 KLN-----YSKTEEELGLSSGAYKFAVT-G---KSWELIRDQMPELIPRIIVKGAIFARMSS--DQKQQLVLELQQL---  489 (523)
Q Consensus       424 ~~~-----~~~~~~~~~~~~~~~~l~i~-~---~~~~~l~~~~~~~~~~~~~~~~v~~~~~p--~~K~~~i~~L~~~---  489 (523)
                      .+.     ......... ..... ...+ +   +....+.+.+...+. .. ....+.++.|  ..|+.+++.+.++   
T Consensus        92 ~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~ei~~~~~~K~~~~~~~~~~~~~  167 (231)
T 1wr8_A           92 EIRKRFPNARTSYTMPD-RRAGL-VIMRETINVETVREIINELNLNLV-AV-DSGFAIHVKKPWINKGSGIEKASEFLGI  167 (231)
T ss_dssp             HHHHHCTTCCBCTTGGG-CSSCE-EECTTTSCHHHHHHHHHHTTCSCE-EE-ECSSCEEEECTTCCHHHHHHHHHHHHTS
T ss_pred             HHHHhCCCceEEecCCC-ceeeE-EEECCCCCHHHHHHHHHhcCCcEE-EE-ecCcEEEEecCCCChHHHHHHHHHHcCC
Confidence            000     000000000 00011 1112 1   112222222211110 00 0011233333  3799999998875   


Q ss_pred             -CCEEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           490 -GYYVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       490 -~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                       .+++++|||+.||++|++.||+||||+|+.+
T Consensus       168 ~~~~~~~iGD~~nD~~~~~~ag~~v~~~~~~~  199 (231)
T 1wr8_A          168 KPKEVAHVGDGENDLDAFKVVGYKVAVAQAPK  199 (231)
T ss_dssp             CGGGEEEEECSGGGHHHHHHSSEEEECTTSCH
T ss_pred             CHHHEEEECCCHHHHHHHHHcCCeEEecCCCH
Confidence             4679999999999999999999999999865

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=99.29  E-value=1.3e-13  Score=132.09  Aligned_cols=172  Identities=14%  Similarity=0.095  Sum_probs=98.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc--CCCCeEEEeecCCCCCCCCCceEEEec-----Ccc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII--DPGETVVDVSAVPGGLKECPKVYFTVS-----GVS  416 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~--~~~~~~i~~ng~~~~~~~~~~~~~~~~-----~~~  416 (523)
                      +.++.++++++|++|+++|++++++|||+...   +.+.++..  ....++++.||+.+...  ....+...     +..
T Consensus        19 ~~~i~~~~~~~l~~l~~~g~~~~iaTGR~~~~---~~~~l~~~~~~~~~~~i~~NGa~i~~~--~~~i~~~~i~~~l~~~   93 (246)
T 3f9r_A           19 RLCQTDEMRALIKRARGAGFCVGTVGGSDFAK---QVEQLGRDVLTQFDYVFAENGLLAYRN--GLEIHRQSLLNALGND   93 (246)
T ss_dssp             TSCCCHHHHHHHHHHHHTTCEEEEECSSCHHH---HHHHHCTTHHHHCSEEEEGGGTEEEET--TEEEEECCHHHHTCHH
T ss_pred             CCccCHHHHHHHHHHHHCCCEEEEECCCCHHH---HHHHhhhhccccCCEEEECCCcEEEEC--CEEEEEeeccccCCHH
Confidence            34689999999999999999999999999984   56667642  12357899999877653  33333322     111


Q ss_pred             hhhhhhhh-------cccCchhhhhccCCCceEEEEec--c--------cH----------HHHHhhCcchHhhh----h
Q psy78           417 AIQTKAKK-------LNYSKTEEELGLSSGAYKFAVTG--K--------SW----------ELIRDQMPELIPRI----I  465 (523)
Q Consensus       417 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~i~~--~--------~~----------~~l~~~~~~~~~~~----~  465 (523)
                      ........       ....... ...............  .        .+          +.+.+.+.+.+...    .
T Consensus        94 ~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  172 (246)
T 3f9r_A           94 RIVKFVKKTLRLIADLDIPVQR-GTFVEYRNGMINVSPIGRNCSQAERDEFEVYDNEHRVRASLIAELENSFPDFGLKYS  172 (246)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCCC-SCCEEECSSCEEECSSCTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHCGGGCEEEE
T ss_pred             HHHHHHHHHHhhhhceeeecCC-ceEEEeecceeccccccccCchhhceeeeEecccchHHHHHHHHHHhhCcCCcEEEE
Confidence            11111000       0000000 000000000011100  0        00          01111111111111    1


Q ss_pred             cccEEEEcCChH--hHHHHHHHHHHCCCEEEEEcC----ChhhHHHHHhCC-ccEEecccCCC
Q psy78           466 VKGAIFARMSSD--QKQQLVLELQQLGYYVAMCGD----GANDCGALRAAH-AGISLSEAESP  521 (523)
Q Consensus       466 ~~~~v~~~~~p~--~K~~~i~~L~~~~~~V~a~GD----G~ND~~MLk~A~-vGIAMgna~~~  521 (523)
                      .+...+.++.|.  +|+.+++.|++..++++||||    |.||++||+.|| +|++|+|+.+.
T Consensus       173 ~sg~~~leI~~~gv~Kg~al~~L~~~~~ev~afGD~~~~g~NDi~Ml~~a~~~g~~v~n~~~~  235 (246)
T 3f9r_A          173 IGGQISFDVFPVGWDKTYCLQFVEDDFEEIHFFGDKTQEGGNDYEIYTDKRTIGHKVTSYKDT  235 (246)
T ss_dssp             EETTTEEEEEETTCSGGGGGGGTTTTCSEEEEEESCCSTTSTTHHHHTCTTSEEEECSSHHHH
T ss_pred             ecCCeEEEEEeCCCCHHHHHHHHHcCcccEEEEeCCCCCCCCCHHHHhCCCccEEEeCCHHHH
Confidence            111224556665  899999999987789999999    699999999997 89999998764

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=99.23  E-value=7.4e-13  Score=127.93  Aligned_cols=170  Identities=15%  Similarity=0.133  Sum_probs=93.3

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEe-cCcchhhhh---h
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTV-SGVSAIQTK---A  422 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~-~~~~~~~~~---~  422 (523)
                      +.+.++++|++++++|++++++|||+ ..+..+.++++....-..+++.||+.+..  .....+.. .+.+.....   .
T Consensus        21 i~~~~~~al~~l~~~G~~~~iaTGR~-~~~~~~~~~l~~~~~~~~~i~~nGa~i~~--~~~~i~~~~l~~~~~~~i~~~~   97 (261)
T 2rbk_A           21 IPSSTIEALEAAHAKGLKIFIATGRP-KAIINNLSELQDRNLIDGYITMNGAYCFV--GEEVIYKSAIPQEEVKAMAAFC   97 (261)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEECSSC-GGGCCSCHHHHHTTCCCEEEEGGGTEEEE--TTEEEEECCCCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHCCCEEEEECCCh-HHHHHHHHHhCcccccCeEEEeCCEEEEE--CCEEEEecCCCHHHHHHHHHHH
Confidence            88999999999999999999999999 88888888887211012478888876543  12222221 111111100   0


Q ss_pred             hhcccC-------c-------hhhh-hc----c-------------CCCceEEEEeccc--HHHHHhhCcchHhhhhccc
Q psy78           423 KKLNYS-------K-------TEEE-LG----L-------------SSGAYKFAVTGKS--WELIRDQMPELIPRIIVKG  468 (523)
Q Consensus       423 ~~~~~~-------~-------~~~~-~~----~-------------~~~~~~l~i~~~~--~~~l~~~~~~~~~~~~~~~  468 (523)
                      ......       .       .... ..    .             ......+.+.++.  ...+.+.++. + ....+.
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~-~-~~~~s~  175 (261)
T 2rbk_A           98 EKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPT-C-EIGRWY  175 (261)
T ss_dssp             HHHTCCEEEECSSCEEEESCCHHHHHHTTTTTCCCCCCBCCHHHHHTSCCSEEEECCCHHHHHHHGGGSTT-C-EEECSS
T ss_pred             HHcCCeEEEEeCCcEEEeCccHHHHHHHHHhhcccCCCccccchhccCceeEEEEEeCHHHHHHHHHhcCC-e-EEEEec
Confidence            000000       0       0000 00    0             0111122222211  1111111110 0 000000


Q ss_pred             EEEEcCCh--HhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           469 AIFARMSS--DQKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       469 ~v~~~~~p--~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      ..+.++.|  .+|+.+++.++++    .+++++|||+.||++|++.||+|+||+|+.++
T Consensus       176 ~~~~ei~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~~v~~~n~~~~  234 (261)
T 2rbk_A          176 PAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKED  234 (261)
T ss_dssp             TTCCEEESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHH
T ss_pred             CCeEEecCCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCceEEecCccHH
Confidence            01112233  3799999998875    46899999999999999999999999998753

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=99.22  E-value=4e-13  Score=128.66  Aligned_cols=171  Identities=13%  Similarity=0.155  Sum_probs=91.2

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC--CCCeEEEeecCCCCCCCCCceEEEec-----Ccc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID--PGETVVDVSAVPGGLKECPKVYFTVS-----GVS  416 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~--~~~~~i~~ng~~~~~~~~~~~~~~~~-----~~~  416 (523)
                      +..+.++++++|++|+++ ++++++|||+...   +.+++++..  ...++++.||+.+..  .....+...     +.+
T Consensus        21 ~~~i~~~~~~al~~l~~~-i~v~iaTGR~~~~---~~~~l~~~~~~~~~~~I~~NGa~i~~--~~~~i~~~~l~~~l~~~   94 (246)
T 2amy_A           21 RQKITKEMDDFLQKLRQK-IKIGVVGGSDFEK---VQEQLGNDVVEKYDYVFPENGLVAYK--DGKLLCRQNIQSHLGEA   94 (246)
T ss_dssp             TSCCCHHHHHHHHHHTTT-SEEEEECSSCHHH---HHHHHCTTHHHHCSEEESGGGTEEEE--TTEEEEECCHHHHHCHH
T ss_pred             CcccCHHHHHHHHHHHhC-CeEEEEcCCCHHH---HHHHhccccccccCEEEECCCcEEEe--CCcEEEeeecccccCHH
Confidence            345899999999999999 9999999998754   556776421  124688899987654  223333321     111


Q ss_pred             hhhh---hhhh----cccCchhhhhccCCCceEEEEec-------c---cHHHHHh-hC-----cchHhhhhcc--cE--
Q psy78           417 AIQT---KAKK----LNYSKTEEELGLSSGAYKFAVTG-------K---SWELIRD-QM-----PELIPRIIVK--GA--  469 (523)
Q Consensus       417 ~~~~---~~~~----~~~~~~~~~~~~~~~~~~l~i~~-------~---~~~~l~~-~~-----~~~~~~~~~~--~~--  469 (523)
                      ....   ....    ....... ...............       .   .+..... ..     ...+......  ..  
T Consensus        95 ~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  173 (246)
T 2amy_A           95 LIQDLINYCLSYIAKIKLPKKR-GTFIEFRNGMLNVSPIGRSCSQEERIEFYELDKKENIRQKFVADLRKEFAGKGLTFS  173 (246)
T ss_dssp             HHHHHHHHHHHHHHHCCCSCCC-SCSEEEETTEEEECSSCTTCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTSCEEEE
T ss_pred             HHHHHHHHHHhcCceEEEecCC-ceeEecccceeehhhhcCcCchhhhhhheeecCCHHHHHHHHHHHHHhcCCCcEEEE
Confidence            1111   0000    0000000 000000000000000       0   0000100 00     0011111111  11  


Q ss_pred             ----EEEcCChH--hHHHHHHHHHHC--CCEEEEEcC----ChhhHHHHHhCCc-cEEecccCCCC
Q psy78           470 ----IFARMSSD--QKQQLVLELQQL--GYYVAMCGD----GANDCGALRAAHA-GISLSEAESPI  522 (523)
Q Consensus       470 ----v~~~~~p~--~K~~~i~~L~~~--~~~V~a~GD----G~ND~~MLk~A~v-GIAMgna~~~v  522 (523)
                          .+.++.|.  +|+.+++.| ..  .++|+||||    |.||++||+.||. |+|||||.+++
T Consensus       174 ~s~~~~leI~~~~~~Kg~al~~l-~~i~~~~viafGD~~~~~~ND~~Ml~~a~~ag~av~Na~~~v  238 (246)
T 2amy_A          174 IGGQISFDVFPDGWDKRYCLRHV-ENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAPEDTR  238 (246)
T ss_dssp             EETTTEEEEEETTCSGGGGGGGT-TTSCCSEEEEEECSCC---CCCHHHHCTTEEEEECSSHHHHH
T ss_pred             EcCCcEEEEecCCCchHHHHHHH-hCCCHHHEEEECCCCCCCCCcHHHHHhCCcceEEeeCCCHHH
Confidence                13455554  899999999 32  579999999    9999999999998 99999997653

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.20  E-value=6e-12  Score=115.91  Aligned_cols=86  Identities=21%  Similarity=0.229  Sum_probs=71.4

Q ss_pred             HHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchh
Q psy78           352 EGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTE  431 (523)
Q Consensus       352 ~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (523)
                      ..+|+.|+++|+++.|+||++...+..+++++|+..                                            
T Consensus        58 ~~~l~~L~~~G~~~~ivT~~~~~~~~~~l~~lgi~~--------------------------------------------   93 (195)
T 3n07_A           58 GYGVKALMNAGIEIAIITGRRSQIVENRMKALGISL--------------------------------------------   93 (195)
T ss_dssp             HHHHHHHHHTTCEEEEECSSCCHHHHHHHHHTTCCE--------------------------------------------
T ss_pred             HHHHHHHHHCCCEEEEEECcCHHHHHHHHHHcCCcE--------------------------------------------
Confidence            345999999999999999999999999999999851                                            


Q ss_pred             hhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHH
Q psy78           432 EELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALR  507 (523)
Q Consensus       432 ~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk  507 (523)
                                                            ++...  +.|..+++.+.+.    .+++++|||+.||++|++
T Consensus        94 --------------------------------------~~~~~--k~k~~~~~~~~~~~~~~~~~~~~vGD~~nDi~~~~  133 (195)
T 3n07_A           94 --------------------------------------IYQGQ--DDKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVME  133 (195)
T ss_dssp             --------------------------------------EECSC--SSHHHHHHHHHHHHCCCGGGEEEEESSGGGHHHHT
T ss_pred             --------------------------------------EeeCC--CCcHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHH
Confidence                                                  12112  4577777777664    578999999999999999


Q ss_pred             hCCccEEecccCCC
Q psy78           508 AAHAGISLSEAESP  521 (523)
Q Consensus       508 ~A~vGIAMgna~~~  521 (523)
                      .||++++|+|+.+.
T Consensus       134 ~ag~~va~~na~~~  147 (195)
T 3n07_A          134 KVALRVCVADGHPL  147 (195)
T ss_dssp             TSSEEEECTTSCHH
T ss_pred             HCCCEEEECChHHH
Confidence            99999999998653

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=99.19  E-value=9.7e-13  Score=127.28  Aligned_cols=49  Identities=16%  Similarity=0.209  Sum_probs=41.3

Q ss_pred             EcCChH--hHHHHHHHHHHC--CCEEEEEcC----ChhhHHHHHhCC-ccEEecccCCC
Q psy78           472 ARMSSD--QKQQLVLELQQL--GYYVAMCGD----GANDCGALRAAH-AGISLSEAESP  521 (523)
Q Consensus       472 ~~~~p~--~K~~~i~~L~~~--~~~V~a~GD----G~ND~~MLk~A~-vGIAMgna~~~  521 (523)
                      .++.|.  +|+.+++.| ..  .++|+||||    |.||++||+.|| .|+||+||.++
T Consensus       189 leI~~~~vsKg~al~~l-~gi~~~~viafGDs~~~~~NDi~Ml~~~~~~g~av~NA~~~  246 (262)
T 2fue_A          189 FDVFPEGWDKRYCLDSL-DQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSPQDT  246 (262)
T ss_dssp             EEEEETTCSTTHHHHHH-TTSCCSEEEEEESCCSTTSTTHHHHHSTTSEEEECSSHHHH
T ss_pred             EEEecCCCCHHHHHHHH-HCCCHHHEEEECCCCCCCCCCHHHHhcCccCcEEecCCCHH
Confidence            344554  799999999 32  578999999    999999999999 59999999764

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=99.17  E-value=9.6e-12  Score=111.54  Aligned_cols=96  Identities=18%  Similarity=0.056  Sum_probs=75.0

Q ss_pred             ccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHH--HcCccCCCCeEEEeecCCCCCCCCCceEE
Q psy78           333 KDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK--ECGIIDPGETVVDVSAVPGGLKECPKVYF  410 (523)
Q Consensus       333 ~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~--~lgi~~~~~~~i~~ng~~~~~~~~~~~~~  410 (523)
                      .+...++.+.++|.      .+|+.|+++|+++.|+||+  ..+..+++  .+|++                        
T Consensus        29 ~~g~~~~~f~~~D~------~~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~~l~lgi~------------------------   76 (168)
T 3ewi_A           29 GDQKEIISYDVKDA------IGISLLKKSGIEVRLISER--ACSKQTLSALKLDCK------------------------   76 (168)
T ss_dssp             SSCCCEEEEEHHHH------HHHHHHHHTTCEEEEECSS--CCCHHHHHTTCCCCC------------------------
T ss_pred             CCCCEEEEEecCcH------HHHHHHHHCCCEEEEEeCc--HHHHHHHHHhCCCcE------------------------
Confidence            44556666666665      4899999999999999999  67778888  44541                        


Q ss_pred             EecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC-
Q psy78           411 TVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL-  489 (523)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~-  489 (523)
                                                                                 ++  ..+++|..+++.++++ 
T Consensus        77 -----------------------------------------------------------~~--~g~~~K~~~l~~~~~~~   95 (168)
T 3ewi_A           77 -----------------------------------------------------------TE--VSVSDKLATVDEWRKEM   95 (168)
T ss_dssp             -----------------------------------------------------------EE--CSCSCHHHHHHHHHHHT
T ss_pred             -----------------------------------------------------------EE--ECCCChHHHHHHHHHHc
Confidence                                                                       00  1124688888887775 


Q ss_pred             ---CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           490 ---GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       490 ---~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                         .+++++|||+.||++|++.||+++||+|+.++
T Consensus        96 gi~~~~~~~vGD~~nDi~~~~~ag~~~a~~na~~~  130 (168)
T 3ewi_A           96 GLCWKEVAYLGNEVSDEECLKRVGLSAVPADACSG  130 (168)
T ss_dssp             TCCGGGEEEECCSGGGHHHHHHSSEEEECTTCCHH
T ss_pred             CcChHHEEEEeCCHhHHHHHHHCCCEEEeCChhHH
Confidence               57899999999999999999999999998753

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.10  E-value=7.4e-11  Score=107.16  Aligned_cols=90  Identities=21%  Similarity=0.243  Sum_probs=74.0

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLN  426 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (523)
                      +.+++.++|++|+++|++++++|||+...+..+++++|+..                                       
T Consensus        36 ~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~~lgl~~---------------------------------------   76 (180)
T 1k1e_A           36 FHVRDGLGIKMLMDADIQVAVLSGRDSPILRRRIADLGIKL---------------------------------------   76 (180)
T ss_dssp             EEHHHHHHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCCE---------------------------------------
T ss_pred             eccchHHHHHHHHHCCCeEEEEeCCCcHHHHHHHHHcCCce---------------------------------------
Confidence            45677899999999999999999999999999999999851                                       


Q ss_pred             cCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhh
Q psy78           427 YSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGAND  502 (523)
Q Consensus       427 ~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND  502 (523)
                                                                 ++..  ...|..+++.+.+.    .+++++|||+.||
T Consensus        77 -------------------------------------------~~~~--~k~k~~~~~~~~~~~~~~~~~~~~vGD~~~D  111 (180)
T 1k1e_A           77 -------------------------------------------FFLG--KLEKETACFDLMKQAGVTAEQTAYIGDDSVD  111 (180)
T ss_dssp             -------------------------------------------EEES--CSCHHHHHHHHHHHHTCCGGGEEEEECSGGG
T ss_pred             -------------------------------------------eecC--CCCcHHHHHHHHHHcCCCHHHEEEECCCHHH
Confidence                                                       1111  14566666666554    3789999999999


Q ss_pred             HHHHHhCCccEEecccCC
Q psy78           503 CGALRAAHAGISLSEAES  520 (523)
Q Consensus       503 ~~MLk~A~vGIAMgna~~  520 (523)
                      ++|++.||++++|+|+.+
T Consensus       112 i~~~~~ag~~~~~~~~~~  129 (180)
T 1k1e_A          112 LPAFAACGTSFAVADAPI  129 (180)
T ss_dssp             HHHHHHSSEEEECTTSCH
T ss_pred             HHHHHHcCCeEEeCCccH
Confidence            999999999999998764

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.08  E-value=1.8e-10  Score=107.32  Aligned_cols=85  Identities=21%  Similarity=0.235  Sum_probs=72.7

Q ss_pred             HHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhh
Q psy78           354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE  433 (523)
Q Consensus       354 aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (523)
                      +|+.|+++|+++.++||++...+..+++++|++                                               
T Consensus        84 ~L~~L~~~G~~l~I~T~~~~~~~~~~l~~lgi~-----------------------------------------------  116 (211)
T 3ij5_A           84 GIRCLITSDIDVAIITGRRAKLLEDRANTLGIT-----------------------------------------------  116 (211)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCC-----------------------------------------------
T ss_pred             HHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc-----------------------------------------------
Confidence            999999999999999999999999999999985                                               


Q ss_pred             hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC
Q psy78           434 LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       434 ~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                         .++...  +.|..+++.+++.    .++++++||+.||++|++.|
T Consensus       117 -----------------------------------~~f~~~--k~K~~~l~~~~~~lg~~~~~~~~vGDs~nDi~~~~~a  159 (211)
T 3ij5_A          117 -----------------------------------HLYQGQ--SDKLVAYHELLATLQCQPEQVAYIGDDLIDWPVMAQV  159 (211)
T ss_dssp             -----------------------------------EEECSC--SSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTS
T ss_pred             -----------------------------------hhhccc--CChHHHHHHHHHHcCcCcceEEEEcCCHHHHHHHHHC
Confidence                                               122222  5677777777765    67899999999999999999


Q ss_pred             CccEEecccCCCC
Q psy78           510 HAGISLSEAESPI  522 (523)
Q Consensus       510 ~vGIAMgna~~~v  522 (523)
                      |++++|+|+.+.+
T Consensus       160 g~~~a~~~~~~~~  172 (211)
T 3ij5_A          160 GLSVAVADAHPLL  172 (211)
T ss_dssp             SEEEECTTSCTTT
T ss_pred             CCEEEeCCccHHH
Confidence            9999999987653

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.05  E-value=2.3e-10  Score=104.75  Aligned_cols=83  Identities=27%  Similarity=0.280  Sum_probs=70.9

Q ss_pred             HHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhh
Q psy78           354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE  433 (523)
Q Consensus       354 aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (523)
                      +|+.|+++|+++.++||++...+..+++++|++.                                              
T Consensus        54 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgl~~----------------------------------------------   87 (189)
T 3mn1_A           54 GIKMLIASGVTTAIISGRKTAIVERRAKSLGIEH----------------------------------------------   87 (189)
T ss_dssp             HHHHHHHTTCEEEEECSSCCHHHHHHHHHHTCSE----------------------------------------------
T ss_pred             HHHHHHHCCCEEEEEECcChHHHHHHHHHcCCHH----------------------------------------------
Confidence            9999999999999999999999999999999851                                              


Q ss_pred             hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC
Q psy78           434 LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       434 ~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                          ++...  .+|..+++.+.+.    .++++++||+.||++|++.|
T Consensus        88 ------------------------------------~f~~~--~~K~~~~~~~~~~~g~~~~~~~~vGD~~nDi~~~~~a  129 (189)
T 3mn1_A           88 ------------------------------------LFQGR--EDKLVVLDKLLAELQLGYEQVAYLGDDLPDLPVIRRV  129 (189)
T ss_dssp             ------------------------------------EECSC--SCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHS
T ss_pred             ------------------------------------HhcCc--CChHHHHHHHHHHcCCChhHEEEECCCHHHHHHHHHC
Confidence                                                22222  5677777777765    57899999999999999999


Q ss_pred             CccEEecccCC
Q psy78           510 HAGISLSEAES  520 (523)
Q Consensus       510 ~vGIAMgna~~  520 (523)
                      |+|++|+|+.+
T Consensus       130 g~~~~~~~~~~  140 (189)
T 3mn1_A          130 GLGMAVANAAS  140 (189)
T ss_dssp             SEEEECTTSCH
T ss_pred             CCeEEeCCccH
Confidence            99999999764

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=98.99  E-value=6.7e-10  Score=100.44  Aligned_cols=82  Identities=15%  Similarity=0.199  Sum_probs=69.3

Q ss_pred             HHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhh
Q psy78           354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE  433 (523)
Q Consensus       354 aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (523)
                      +|++|+++|+++.++||++...+..+++++|++     +                                         
T Consensus        47 ~l~~L~~~g~~~~i~T~~~~~~~~~~~~~lgi~-----~-----------------------------------------   80 (176)
T 3mmz_A           47 GIAALRKSGLTMLILSTEQNPVVAARARKLKIP-----V-----------------------------------------   80 (176)
T ss_dssp             HHHHHHHTTCEEEEEESSCCHHHHHHHHHHTCC-----E-----------------------------------------
T ss_pred             HHHHHHHCCCeEEEEECcChHHHHHHHHHcCCe-----e-----------------------------------------
Confidence            899999999999999999999999999999983     1                                         


Q ss_pred             hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC
Q psy78           434 LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       434 ~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                           +...  +.|..+++.+.+.    .++++++||+.||++|++.|
T Consensus        81 -------------------------------------~~~~--~~k~~~l~~~~~~~~~~~~~~~~vGD~~nD~~~~~~a  121 (176)
T 3mmz_A           81 -------------------------------------LHGI--DRKDLALKQWCEEQGIAPERVLYVGNDVNDLPCFALV  121 (176)
T ss_dssp             -------------------------------------EESC--SCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHS
T ss_pred             -------------------------------------EeCC--CChHHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHC
Confidence                                                 1111  5577777776664    47899999999999999999


Q ss_pred             CccEEecccCC
Q psy78           510 HAGISLSEAES  520 (523)
Q Consensus       510 ~vGIAMgna~~  520 (523)
                      |+|++|+|+.+
T Consensus       122 g~~v~~~~~~~  132 (176)
T 3mmz_A          122 GWPVAVASAHD  132 (176)
T ss_dssp             SEEEECTTCCH
T ss_pred             CCeEECCChhH
Confidence            99999999764

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=98.97  E-value=6.2e-10  Score=102.66  Aligned_cols=107  Identities=19%  Similarity=0.209  Sum_probs=76.4

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK  423 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (523)
                      +.++.++++++++.++++|++++++||++...+..+.+.+|++.    + ..++....+   .                 
T Consensus        74 ~~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~---~-----------------  128 (211)
T 1l7m_A           74 RITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDY----A-FANRLIVKD---G-----------------  128 (211)
T ss_dssp             TCCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCSE----E-EEEEEEEET---T-----------------
T ss_pred             hCCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCCe----E-EEeeeEEEC---C-----------------
Confidence            34678899999999999999999999999988888888888741    1 111100000   0                 


Q ss_pred             hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEc-CChHhHHHHHHHHHHC----CCEEEEEcC
Q psy78           424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFAR-MSSDQKQQLVLELQQL----GYYVAMCGD  498 (523)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~-~~p~~K~~~i~~L~~~----~~~V~a~GD  498 (523)
                                          ..++                     ....+ ..+.+|...+..+.++    .+++++|||
T Consensus       129 --------------------~~~~---------------------~~~~~~~~~~~K~~~l~~~~~~lgi~~~~~~~iGD  167 (211)
T 1l7m_A          129 --------------------KLTG---------------------DVEGEVLKENAKGEILEKIAKIEGINLEDTVAVGD  167 (211)
T ss_dssp             --------------------EEEE---------------------EEECSSCSTTHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred             --------------------EEcC---------------------CcccCccCCccHHHHHHHHHHHcCCCHHHEEEEec
Confidence                                0000                     01111 1245788888877764    467999999


Q ss_pred             ChhhHHHHHhCCccEEec
Q psy78           499 GANDCGALRAAHAGISLS  516 (523)
Q Consensus       499 G~ND~~MLk~A~vGIAMg  516 (523)
                      +.||++|++.||++++|+
T Consensus       168 ~~~Di~~~~~ag~~~~~~  185 (211)
T 1l7m_A          168 GANDISMFKKAGLKIAFC  185 (211)
T ss_dssp             SGGGHHHHHHCSEEEEES
T ss_pred             ChhHHHHHHHCCCEEEEC
Confidence            999999999999999998

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=98.94  E-value=5.1e-10  Score=102.64  Aligned_cols=83  Identities=20%  Similarity=0.208  Sum_probs=66.1

Q ss_pred             HHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhh
Q psy78           354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE  433 (523)
Q Consensus       354 aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (523)
                      +|+.|+++|+++.++||++...+..+++.+|++.                                              
T Consensus        54 ~l~~L~~~g~~~~ivTn~~~~~~~~~l~~lgl~~----------------------------------------------   87 (191)
T 3n1u_A           54 GLKLLMAAGIQVAIITTAQNAVVDHRMEQLGITH----------------------------------------------   87 (191)
T ss_dssp             HHHHHHHTTCEEEEECSCCSHHHHHHHHHHTCCE----------------------------------------------
T ss_pred             HHHHHHHCCCeEEEEeCcChHHHHHHHHHcCCcc----------------------------------------------
Confidence            4999999999999999999999999999999851                                              


Q ss_pred             hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH----CCCEEEEEcCChhhHHHHHhC
Q psy78           434 LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ----LGYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       434 ~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~----~~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                          ++...  +.|..+++.+.+    ..+++++|||+.||++|++.|
T Consensus        88 ------------------------------------~~~~~--kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~a  129 (191)
T 3n1u_A           88 ------------------------------------YYKGQ--VDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQV  129 (191)
T ss_dssp             ------------------------------------EECSC--SSCHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHS
T ss_pred             ------------------------------------ceeCC--CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHC
Confidence                                                11111  223344444333    367899999999999999999


Q ss_pred             CccEEecccCC
Q psy78           510 HAGISLSEAES  520 (523)
Q Consensus       510 ~vGIAMgna~~  520 (523)
                      |++++|+|+.+
T Consensus       130 g~~~~~~~~~~  140 (191)
T 3n1u_A          130 GLGVAVSNAVP  140 (191)
T ss_dssp             SEEEECTTCCH
T ss_pred             CCEEEeCCccH
Confidence            99999999864

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=98.93  E-value=4.5e-10  Score=102.76  Aligned_cols=102  Identities=19%  Similarity=0.236  Sum_probs=77.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.+.++.|+++|+++.++||.+...+..+ +.+|+... ...+....                            
T Consensus        79 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~~~-~~~~~~~~----------------------------  128 (201)
T 4ap9_A           79 NVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KELGDEFM-ANRAIFED----------------------------  128 (201)
T ss_dssp             CCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSEEE-EEEEEEET----------------------------
T ss_pred             CCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCchhh-eeeEEeeC----------------------------
Confidence            7899999999999999999999999988887777 77776421 00000000                            


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGA  505 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~M  505 (523)
                                            .                   ........|..|+.+++.+  ..+++++|||+.||++|
T Consensus       129 ----------------------~-------------------~~~~~~~~~~~k~~~l~~l--~~~~~i~iGD~~~Di~~  165 (201)
T 4ap9_A          129 ----------------------G-------------------KFQGIRLRFRDKGEFLKRF--RDGFILAMGDGYADAKM  165 (201)
T ss_dssp             ----------------------T-------------------EEEEEECCSSCHHHHHGGG--TTSCEEEEECTTCCHHH
T ss_pred             ----------------------C-------------------ceECCcCCccCHHHHHHhc--CcCcEEEEeCCHHHHHH
Confidence                                  0                   0001234456799999988  67889999999999999


Q ss_pred             HHhCCccEEecccCC
Q psy78           506 LRAAHAGISLSEAES  520 (523)
Q Consensus       506 Lk~A~vGIAMgna~~  520 (523)
                      ++.||+||+|+|+.+
T Consensus       166 ~~~ag~~v~~~~~~~  180 (201)
T 4ap9_A          166 FERADMGIAVGREIP  180 (201)
T ss_dssp             HHHCSEEEEESSCCT
T ss_pred             HHhCCceEEECCCCc
Confidence            999999999999864

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=98.91  E-value=1.6e-09  Score=108.43  Aligned_cols=108  Identities=21%  Similarity=0.280  Sum_probs=78.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.++++.|+++|+++.++||.+...+..+++++|+...-...+.....                           
T Consensus       178 ~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~d~---------------------------  230 (335)
T 3n28_A          178 PLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLDYAQSNTLEIVSG---------------------------  230 (335)
T ss_dssp             CCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEEEEEETT---------------------------
T ss_pred             CcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCCeEEeeeeEeeCC---------------------------
Confidence            68899999999999999999999999999999999999985210000000000                           


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEE-EcCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIF-ARMSSDQKQQLVLELQQL----GYYVAMCGDGA  500 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~  500 (523)
                                        .+++                     .+. ....++.|..+++.+.+.    .+++++||||.
T Consensus       231 ------------------~~tg---------------------~~~~~~~~~kpk~~~~~~~~~~lgi~~~~~v~vGDs~  271 (335)
T 3n28_A          231 ------------------KLTG---------------------QVLGEVVSAQTKADILLTLAQQYDVEIHNTVAVGDGA  271 (335)
T ss_dssp             ------------------EEEE---------------------EEESCCCCHHHHHHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred             ------------------eeee---------------------eecccccChhhhHHHHHHHHHHcCCChhhEEEEeCCH
Confidence                              0000                     000 112345777777777664    57899999999


Q ss_pred             hhHHHHHhCCccEEecccCC
Q psy78           501 NDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       501 ND~~MLk~A~vGIAMgna~~  520 (523)
                      ||++|++.||+|||| |+.+
T Consensus       272 nDi~~a~~aG~~va~-~~~~  290 (335)
T 3n28_A          272 NDLVMMAAAGLGVAY-HAKP  290 (335)
T ss_dssp             GGHHHHHHSSEEEEE-SCCH
T ss_pred             HHHHHHHHCCCeEEe-CCCH
Confidence            999999999999999 7654

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=98.84  E-value=4.6e-09  Score=93.46  Aligned_cols=83  Identities=20%  Similarity=0.112  Sum_probs=67.9

Q ss_pred             HHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhh
Q psy78           354 VIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEE  433 (523)
Q Consensus       354 aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (523)
                      +|+.|+++|+++.++||++...+..+++++|+..                                              
T Consensus        39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~~----------------------------------------------   72 (164)
T 3e8m_A           39 GIFWAHNKGIPVGILTGEKTEIVRRRAEKLKVDY----------------------------------------------   72 (164)
T ss_dssp             HHHHHHHTTCCEEEECSSCCHHHHHHHHHTTCSE----------------------------------------------
T ss_pred             HHHHHHHCCCEEEEEeCCChHHHHHHHHHcCCCE----------------------------------------------
Confidence            8999999999999999999999999999999851                                              


Q ss_pred             hccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhC
Q psy78           434 LGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRAA  509 (523)
Q Consensus       434 ~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A  509 (523)
                                                          .+...  +.|..+++.+.+.    .++++++||+.||++|++.|
T Consensus        73 ------------------------------------~~~~~--kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~a  114 (164)
T 3e8m_A           73 ------------------------------------LFQGV--VDKLSAAEELCNELGINLEQVAYIGDDLNDAKLLKRV  114 (164)
T ss_dssp             ------------------------------------EECSC--SCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHTTS
T ss_pred             ------------------------------------eeccc--CChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHC
Confidence                                                12112  3455555555543    57899999999999999999


Q ss_pred             CccEEecccCC
Q psy78           510 HAGISLSEAES  520 (523)
Q Consensus       510 ~vGIAMgna~~  520 (523)
                      |++++|+|+.+
T Consensus       115 g~~~~~~~~~~  125 (164)
T 3e8m_A          115 GIAGVPASAPF  125 (164)
T ss_dssp             SEEECCTTSCH
T ss_pred             CCeEEcCChHH
Confidence            99999998754

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=98.79  E-value=5.9e-09  Score=96.71  Aligned_cols=109  Identities=25%  Similarity=0.260  Sum_probs=78.8

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      -++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+...-+.++.....                          
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~~~f~~~~~~~~~--------------------------  127 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLDAAFSNTLIVEND--------------------------  127 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCSEEEEEEEEEETT--------------------------
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcchhccceeEEeCC--------------------------
Confidence            458899999999999999999999999999999999999985211111110000                          


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcC-ChHhHHHHHHHHHHC----CCEEEEEcCC
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARM-SSDQKQQLVLELQQL----GYYVAMCGDG  499 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~p~~K~~~i~~L~~~----~~~V~a~GDG  499 (523)
                                     .    .+                     ..+.... ..+.|..+++.+.+.    .+++++|||+
T Consensus       128 ---------------~----~~---------------------~~~~~~~~~~k~k~~~~~~~~~~~g~~~~~~i~vGDs  167 (217)
T 3m1y_A          128 ---------------A----LN---------------------GLVTGHMMFSHSKGEMLLVLQRLLNISKTNTLVVGDG  167 (217)
T ss_dssp             ---------------E----EE---------------------EEEEESCCSTTHHHHHHHHHHHHHTCCSTTEEEEECS
T ss_pred             ---------------E----EE---------------------eeeccCCCCCCChHHHHHHHHHHcCCCHhHEEEEeCC
Confidence                           0    00                     0011111 245777777777664    5789999999


Q ss_pred             hhhHHHHHhCCccEEecccCC
Q psy78           500 ANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       500 ~ND~~MLk~A~vGIAMgna~~  520 (523)
                      .||++|++.||++++| |+.+
T Consensus       168 ~~Di~~a~~aG~~~~~-~~~~  187 (217)
T 3m1y_A          168 ANDLSMFKHAHIKIAF-NAKE  187 (217)
T ss_dssp             GGGHHHHTTCSEEEEE-SCCH
T ss_pred             HHHHHHHHHCCCeEEE-CccH
Confidence            9999999999999999 7654

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=98.77  E-value=1e-09  Score=107.34  Aligned_cols=51  Identities=20%  Similarity=0.163  Sum_probs=42.3

Q ss_pred             EEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           471 FARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       471 ~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +.++.|.  +|+.+++.+.+.    .+++++|||+.||++|++.||+||+|+|+.++
T Consensus       202 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag~~~~~~~~~~~  258 (289)
T 3gyg_A          202 DVDFIPIGTGKNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGNGYLLKNATQE  258 (289)
T ss_dssp             EEEEEESCCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEECTTCCHH
T ss_pred             EEEEEeCCCCHHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCCcEEEECCccHH
Confidence            3444443  799999988875    46799999999999999999999999998653

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=98.74  E-value=1.4e-08  Score=90.06  Aligned_cols=90  Identities=18%  Similarity=0.259  Sum_probs=69.7

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLN  426 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  426 (523)
                      +.+++.++|++|+++|++++++||++...+..+++.+|+..                                       
T Consensus        37 ~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~~---------------------------------------   77 (162)
T 2p9j_A           37 FNVLDGIGIKLLQKMGITLAVISGRDSAPLITRLKELGVEE---------------------------------------   77 (162)
T ss_dssp             EEHHHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHTTCCE---------------------------------------
T ss_pred             ecccHHHHHHHHHHCCCEEEEEeCCCcHHHHHHHHHcCCHh---------------------------------------
Confidence            45778999999999999999999999999999999999851                                       


Q ss_pred             cCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH----CCCEEEEEcCChhh
Q psy78           427 YSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ----LGYYVAMCGDGAND  502 (523)
Q Consensus       427 ~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~----~~~~V~a~GDG~ND  502 (523)
                                                                 .+..  ++.|...++.+.+    ..++++++||+.||
T Consensus        78 -------------------------------------------~~~~--~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~D  112 (162)
T 2p9j_A           78 -------------------------------------------IYTG--SYKKLEIYEKIKEKYSLKDEEIGFIGDDVVD  112 (162)
T ss_dssp             -------------------------------------------EEEC--C--CHHHHHHHHHHTTCCGGGEEEEECSGGG
T ss_pred             -------------------------------------------hccC--CCCCHHHHHHHHHHcCCCHHHEEEECCCHHH
Confidence                                                       1111  1223344433333    25689999999999


Q ss_pred             HHHHHhCCccEEecccCC
Q psy78           503 CGALRAAHAGISLSEAES  520 (523)
Q Consensus       503 ~~MLk~A~vGIAMgna~~  520 (523)
                      ++|.+.||++++++|+.+
T Consensus       113 i~~a~~ag~~~~~~~~~~  130 (162)
T 2p9j_A          113 IEVMKKVGFPVAVRNAVE  130 (162)
T ss_dssp             HHHHHHSSEEEECTTSCH
T ss_pred             HHHHHHCCCeEEecCccH
Confidence            999999999999988653

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=98.73  E-value=1.5e-08  Score=92.48  Aligned_cols=86  Identities=17%  Similarity=0.215  Sum_probs=68.7

Q ss_pred             HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78           353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE  432 (523)
Q Consensus       353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (523)
                      .+|++|+++|++++++||++...+..+++++|+..                                             
T Consensus        60 ~~l~~L~~~g~~v~ivT~~~~~~~~~~l~~lgl~~---------------------------------------------   94 (188)
T 2r8e_A           60 YGIRCALTSDIEVAIITGRKAKLVEDRCATLGITH---------------------------------------------   94 (188)
T ss_dssp             HHHHHHHTTTCEEEEECSSCCHHHHHHHHHHTCCE---------------------------------------------
T ss_pred             HHHHHHHHCCCeEEEEeCCChHHHHHHHHHcCCce---------------------------------------------
Confidence            48999999999999999999999999999999851                                             


Q ss_pred             hhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHh
Q psy78           433 ELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRA  508 (523)
Q Consensus       433 ~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~  508 (523)
                                                           ++..  .+.|..+++.+.+.    .++++++||+.||++|++.
T Consensus        95 -------------------------------------~~~~--~kpk~~~~~~~~~~~g~~~~~~~~iGD~~~Di~~a~~  135 (188)
T 2r8e_A           95 -------------------------------------LYQG--QSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEK  135 (188)
T ss_dssp             -------------------------------------EECS--CSCSHHHHHHHHHHHTCCGGGEEEEESSGGGHHHHTT
T ss_pred             -------------------------------------eecC--CCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHH
Confidence                                                 1111  13345555555543    4689999999999999999


Q ss_pred             CCccEEecccCCCC
Q psy78           509 AHAGISLSEAESPI  522 (523)
Q Consensus       509 A~vGIAMgna~~~v  522 (523)
                      ||++++++|+.+++
T Consensus       136 ag~~~~~~~~~~~~  149 (188)
T 2r8e_A          136 VGLSVAVADAHPLL  149 (188)
T ss_dssp             SSEEEECTTSCTTT
T ss_pred             CCCEEEecCcCHHH
Confidence            99999999876543

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=98.69  E-value=1.7e-08  Score=104.11  Aligned_cols=108  Identities=21%  Similarity=0.261  Sum_probs=78.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.+.++.|+++|+++.++||.+...+..+++.+|++..-...+.....                           
T Consensus       256 ~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~~~~~~~l~~~dg---------------------------  308 (415)
T 3p96_A          256 ELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLDYVAANELEIVDG---------------------------  308 (415)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCSEEEEECEEEETT---------------------------
T ss_pred             ccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCccceeeeeEEEeCC---------------------------
Confidence            78999999999999999999999999999999999999985210000000000                           


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEE-EcCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIF-ARMSSDQKQQLVLELQQL----GYYVAMCGDGA  500 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~  500 (523)
                                        .+++                     .+. .-..++.|..+++.+.+.    .++++++||+.
T Consensus       309 ------------------~~tg---------------------~~~~~v~~~kpk~~~~~~~~~~~gi~~~~~i~vGD~~  349 (415)
T 3p96_A          309 ------------------TLTG---------------------RVVGPIIDRAGKATALREFAQRAGVPMAQTVAVGDGA  349 (415)
T ss_dssp             ------------------EEEE---------------------EECSSCCCHHHHHHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred             ------------------EEEe---------------------eEccCCCCCcchHHHHHHHHHHcCcChhhEEEEECCH
Confidence                              0000                     000 012256788888777764    47899999999


Q ss_pred             hhHHHHHhCCccEEecccCC
Q psy78           501 NDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       501 ND~~MLk~A~vGIAMgna~~  520 (523)
                      ||++|++.||+|+|+ |+.+
T Consensus       350 ~Di~~a~~aG~~va~-~~~~  368 (415)
T 3p96_A          350 NDIDMLAAAGLGIAF-NAKP  368 (415)
T ss_dssp             GGHHHHHHSSEEEEE-SCCH
T ss_pred             HHHHHHHHCCCeEEE-CCCH
Confidence            999999999999999 6544

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=98.67  E-value=3.7e-08  Score=97.56  Aligned_cols=107  Identities=23%  Similarity=0.288  Sum_probs=76.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.++++.|+++|+++.++||.+...+..+++.+|++..-+..+...+..                          
T Consensus       179 ~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~~~f~~~l~~~dg~--------------------------  232 (317)
T 4eze_A          179 TLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLDYAFSNTVEIRDNV--------------------------  232 (317)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEECEEEETTE--------------------------
T ss_pred             EECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCCeEEEEEEEeeCCe--------------------------
Confidence            488999999999999999999999999999999999999852100011000000                          


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEE-cCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFA-RMSSDQKQQLVLELQQL----GYYVAMCGDGA  500 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~-~~~p~~K~~~i~~L~~~----~~~V~a~GDG~  500 (523)
                                         .+|                     .+.. ...++.|..+++.+.+.    .++++++||+.
T Consensus       233 -------------------~tg---------------------~i~~~~~~~kpkp~~~~~~~~~lgv~~~~~i~VGDs~  272 (317)
T 4eze_A          233 -------------------LTD---------------------NITLPIMNAANKKQTLVDLAARLNIATENIIACGDGA  272 (317)
T ss_dssp             -------------------EEE---------------------EECSSCCCHHHHHHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred             -------------------eee---------------------eEecccCCCCCCHHHHHHHHHHcCCCcceEEEEeCCH
Confidence                               000                     0000 11345677777666553    57899999999


Q ss_pred             hhHHHHHhCCccEEecccC
Q psy78           501 NDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       501 ND~~MLk~A~vGIAMgna~  519 (523)
                      ||++|++.||+|+++ |+.
T Consensus       273 ~Di~aa~~AG~~va~-~~~  290 (317)
T 4eze_A          273 NDLPMLEHAGTGIAW-KAK  290 (317)
T ss_dssp             GGHHHHHHSSEEEEE-SCC
T ss_pred             HHHHHHHHCCCeEEe-CCC
Confidence            999999999999999 443

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=98.65  E-value=2.6e-08  Score=91.70  Aligned_cols=101  Identities=19%  Similarity=0.205  Sum_probs=74.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCC--CeEEEeecCCCCCCCCCceEEEecCcchhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG--ETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKA  422 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~--~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~  422 (523)
                      ..+.+++.+.++.|+++|++++++|+.+...+....+.+|+...-  ..++.                            
T Consensus        69 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~i~~----------------------------  120 (205)
T 3m9l_A           69 SRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLADCFAEADVLG----------------------------  120 (205)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGGGSCGGGEEC----------------------------
T ss_pred             CCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCchhhcCcceEEe----------------------------
Confidence            356789999999999999999999999999999999999885210  00000                            


Q ss_pred             hhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcC-ChHhHHHHHHHHHH----CCCEEEEEc
Q psy78           423 KKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARM-SSDQKQQLVLELQQ----LGYYVAMCG  497 (523)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-~p~~K~~~i~~L~~----~~~~V~a~G  497 (523)
                                                                       .+. ..+.|..+++.+.+    ..+++++||
T Consensus       121 -------------------------------------------------~~~~~~kp~~~~~~~~~~~~g~~~~~~i~iG  151 (205)
T 3m9l_A          121 -------------------------------------------------RDEAPPKPHPGGLLKLAEAWDVSPSRMVMVG  151 (205)
T ss_dssp             -------------------------------------------------TTTSCCTTSSHHHHHHHHHTTCCGGGEEEEE
T ss_pred             -------------------------------------------------CCCCCCCCCHHHHHHHHHHcCCCHHHEEEEC
Confidence                                                             000 01223333444333    357899999


Q ss_pred             CChhhHHHHHhCCc-cEEecccCCCC
Q psy78           498 DGANDCGALRAAHA-GISLSEAESPI  522 (523)
Q Consensus       498 DG~ND~~MLk~A~v-GIAMgna~~~v  522 (523)
                      |+.||++|.+.||+ +|+|+|+.+++
T Consensus       152 D~~~Di~~a~~aG~~~i~v~~~~~~~  177 (205)
T 3m9l_A          152 DYRFDLDCGRAAGTRTVLVNLPDNPW  177 (205)
T ss_dssp             SSHHHHHHHHHHTCEEEECSSSSCSC
T ss_pred             CCHHHHHHHHHcCCEEEEEeCCCCcc
Confidence            99999999999999 99999987653

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=98.63  E-value=4.4e-08  Score=91.25  Aligned_cols=98  Identities=13%  Similarity=0.131  Sum_probs=75.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      ..+.+++.+.++.|+++|+++.++|+.....+..+.+.+|+...-+.+                                
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~--------------------------------  132 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLAFYFDAI--------------------------------  132 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCGGGCSEE--------------------------------
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCHhheeee--------------------------------
Confidence            357899999999999999999999999999899999999875211111                                


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCC--hHhHHHHHHHHHHC----CCEEEEEcC
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMS--SDQKQQLVLELQQL----GYYVAMCGD  498 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~--p~~K~~~i~~L~~~----~~~V~a~GD  498 (523)
                                                                   +..+..  .+.|..+++.+.++    .+++++|||
T Consensus       133 ---------------------------------------------~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~i~iGD  167 (226)
T 3mc1_A          133 ---------------------------------------------VGSSLDGKLSTKEDVIRYAMESLNIKSDDAIMIGD  167 (226)
T ss_dssp             ---------------------------------------------EEECTTSSSCSHHHHHHHHHHHHTCCGGGEEEEES
T ss_pred             ---------------------------------------------eccCCCCCCCCCHHHHHHHHHHhCcCcccEEEECC
Confidence                                                         111111  23456666665553    578999999


Q ss_pred             ChhhHHHHHhCCc---cEEecccC
Q psy78           499 GANDCGALRAAHA---GISLSEAE  519 (523)
Q Consensus       499 G~ND~~MLk~A~v---GIAMgna~  519 (523)
                      +.||++|.+.||+   +|+||++.
T Consensus       168 ~~~Di~~a~~aG~~~i~v~~g~~~  191 (226)
T 3mc1_A          168 REYDVIGALKNNLPSIGVTYGFGS  191 (226)
T ss_dssp             SHHHHHHHHTTTCCEEEESSSSSC
T ss_pred             CHHHHHHHHHCCCCEEEEccCCCC
Confidence            9999999999999   99998864

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=98.62  E-value=2e-07  Score=87.40  Aligned_cols=105  Identities=20%  Similarity=0.199  Sum_probs=75.0

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      .+.|++.+.|+.|+++|++++++||.+...+..+++.+|++.    ++...- .          ..  +           
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~~----~~~~~~-~----------~~--~-----------  143 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQH----LIATDP-E----------YR--D-----------  143 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCCE----EEECEE-E----------EE--T-----------
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCCE----EEEcce-E----------EE--C-----------
Confidence            579999999999999999999999999999999999999851    111000 0          00  0           


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEE-EcCChHhHHHHHHHHHHC-C------CEEEEEc
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIF-ARMSSDQKQQLVLELQQL-G------YYVAMCG  497 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~-~~~~p~~K~~~i~~L~~~-~------~~V~a~G  497 (523)
                                   .    ..++                     ... ....+..|...++.+.+. +      ++++++|
T Consensus       144 -------------~----~~~g---------------------~~~~~~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~vG  185 (232)
T 3fvv_A          144 -------------G----RYTG---------------------RIEGTPSFREGKVVRVNQWLAGMGLALGDFAESYFYS  185 (232)
T ss_dssp             -------------T----EEEE---------------------EEESSCSSTHHHHHHHHHHHHHTTCCGGGSSEEEEEE
T ss_pred             -------------C----EEee---------------------eecCCCCcchHHHHHHHHHHHHcCCCcCchhheEEEe
Confidence                         0    0000                     001 112345787777666543 3      6899999


Q ss_pred             CChhhHHHHHhCCccEEec
Q psy78           498 DGANDCGALRAAHAGISLS  516 (523)
Q Consensus       498 DG~ND~~MLk~A~vGIAMg  516 (523)
                      |+.||++|++.||+++++.
T Consensus       186 Ds~~D~~~~~~ag~~~~~~  204 (232)
T 3fvv_A          186 DSVNDVPLLEAVTRPIAAN  204 (232)
T ss_dssp             CCGGGHHHHHHSSEEEEES
T ss_pred             CCHhhHHHHHhCCCeEEEC
Confidence            9999999999999999984

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=98.60  E-value=1.7e-07  Score=86.90  Aligned_cols=41  Identities=12%  Similarity=0.111  Sum_probs=36.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.+++.|++++++|+.+...+....+.+|+.
T Consensus        94 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~  134 (226)
T 1te2_A           94 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR  134 (226)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG
T ss_pred             CcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcH
Confidence            46789999999999999999999999988888888888874

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=98.55  E-value=1.4e-07  Score=88.50  Aligned_cols=42  Identities=21%  Similarity=0.220  Sum_probs=38.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ..+.+++.+.++.|+++|++++++|+.+...+..+.+.+|+.
T Consensus       103 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~  144 (237)
T 4ex6_A          103 RLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLD  144 (237)
T ss_dssp             GGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGG
T ss_pred             CccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCch
Confidence            457899999999999999999999999999999999999885

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=98.51  E-value=2.3e-07  Score=89.95  Aligned_cols=106  Identities=9%  Similarity=0.016  Sum_probs=76.7

Q ss_pred             cCCCcchHHHHHHHHhCCC--cEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARV--KVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKA  422 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi--~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~  422 (523)
                      -++.|++.++++.|+++|+  +++++|+.+...+....+.+|+...-+.++......                       
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~~~fd~v~~~~~~~-----------------------  197 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIADLFDGLTYCDYSR-----------------------  197 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCTTSCSEEECCCCSS-----------------------
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCcccccceEEEeccCC-----------------------
Confidence            3578899999999999999  999999999999999999999863221111100000                       


Q ss_pred             hhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH----CC-CEEEEEc
Q psy78           423 KKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ----LG-YYVAMCG  497 (523)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~----~~-~~V~a~G  497 (523)
                                                                      .....++.|..+++.+.+    .. +++++||
T Consensus       198 ------------------------------------------------~~~~~~Kp~~~~~~~~~~~lgi~~~~~~i~vG  229 (282)
T 3nuq_A          198 ------------------------------------------------TDTLVCKPHVKAFEKAMKESGLARYENAYFID  229 (282)
T ss_dssp             ------------------------------------------------CSSCCCTTSHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred             ------------------------------------------------CcccCCCcCHHHHHHHHHHcCCCCcccEEEEc
Confidence                                                            000112334455555444    35 8899999


Q ss_pred             CChhhHHHHHhCCccEEecccCCC
Q psy78           498 DGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       498 DG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      |+.||+.|.+.||+|++|+++.+.
T Consensus       230 D~~~Di~~a~~aG~~~~~~~~~~~  253 (282)
T 3nuq_A          230 DSGKNIETGIKLGMKTCIHLVENE  253 (282)
T ss_dssp             SCHHHHHHHHHHTCSEEEEECSCC
T ss_pred             CCHHHHHHHHHCCCeEEEEEcCCc
Confidence            999999999999999999998764

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.51  E-value=1.1e-07  Score=88.19  Aligned_cols=41  Identities=17%  Similarity=0.137  Sum_probs=36.0

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.+++.|+++.++|+.+........+.+|+.
T Consensus        89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~  129 (225)
T 3d6j_A           89 ILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPD  129 (225)
T ss_dssp             EECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCT
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCch
Confidence            34689999999999999999999999988888888888774

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=98.50  E-value=4.6e-07  Score=83.25  Aligned_cols=104  Identities=20%  Similarity=0.255  Sum_probs=78.8

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      -++.|++.+.++.|+++ ++++++|+.+...+..+++.+|+...-+..+......                         
T Consensus        68 ~~~~~g~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~gl~~~f~~~~~~~~~~-------------------------  121 (206)
T 1rku_A           68 LKPLEGAVEFVDWLRER-FQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDSD-------------------------  121 (206)
T ss_dssp             CCCCTTHHHHHHHHHTT-SEEEEEEEEEHHHHHHHHHHTTCCCEEEEEEEECTTS-------------------------
T ss_pred             cCCCccHHHHHHHHHhc-CcEEEEECChHHHHHHHHHHcCCcceecceeEEcCCc-------------------------
Confidence            35789999999999999 9999999999999999999999852100000000000                         


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                                                .....-.-.|..|..+++.+...++++++|||+.||++
T Consensus       122 ------------------------------------------~~~~~~~p~p~~~~~~l~~l~~~~~~~~~iGD~~~Di~  159 (206)
T 1rku_A          122 ------------------------------------------RVVGYQLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTT  159 (206)
T ss_dssp             ------------------------------------------CEEEEECCSSSHHHHHHHHHHHTTCEEEEEECSSTTHH
T ss_pred             ------------------------------------------eEEeeecCCCchHHHHHHHHHhcCCEEEEEeCChhhHH
Confidence                                                      00001123567899999999888899999999999999


Q ss_pred             HHHhCCccEEec
Q psy78           505 ALRAAHAGISLS  516 (523)
Q Consensus       505 MLk~A~vGIAMg  516 (523)
                      |.+.||++++|.
T Consensus       160 ~a~~aG~~~~~~  171 (206)
T 1rku_A          160 MLSEAHAGILFH  171 (206)
T ss_dssp             HHHHSSEEEEES
T ss_pred             HHHhcCccEEEC
Confidence            999999999984

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=98.50  E-value=2.1e-07  Score=87.06  Aligned_cols=104  Identities=17%  Similarity=0.143  Sum_probs=66.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.+++.+.++.|+++|+++.++|+.+.  +..+.+.+|+...-+.++.                               
T Consensus        92 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl~~~f~~i~~-------------------------------  138 (233)
T 3nas_A           92 DLLPGIGRLLCQLKNENIKIGLASSSRN--APKILRRLAIIDDFHAIVD-------------------------------  138 (233)
T ss_dssp             GSCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCTTTCSEECC-------------------------------
T ss_pred             CcCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCcHhhcCEEee-------------------------------
Confidence            3789999999999999999999999854  7777888887531111100                               


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGA  505 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~M  505 (523)
                                           ++.                   .....-.|.--..+++.+.-..+++++|||+.||+.|
T Consensus       139 ---------------------~~~-------------------~~~~Kp~~~~~~~~~~~lgi~~~~~i~vGDs~~Di~~  178 (233)
T 3nas_A          139 ---------------------PTT-------------------LAKGKPDPDIFLTAAAMLDVSPADCAAIEDAEAGISA  178 (233)
T ss_dssp             ---------------------C----------------------------CCHHHHHHHHHTSCGGGEEEEECSHHHHHH
T ss_pred             ---------------------Hhh-------------------CCCCCCChHHHHHHHHHcCCCHHHEEEEeCCHHHHHH
Confidence                                 000                   0000000111123334443346889999999999999


Q ss_pred             HHhCCccEEecccCCCC
Q psy78           506 LRAAHAGISLSEAESPI  522 (523)
Q Consensus       506 Lk~A~vGIAMgna~~~v  522 (523)
                      .+.||++++|.|+.+++
T Consensus       179 a~~aG~~~~~~~~~~~~  195 (233)
T 3nas_A          179 IKSAGMFAVGVGQGQPM  195 (233)
T ss_dssp             HHHTTCEEEECC-----
T ss_pred             HHHcCCEEEEECCcccc
Confidence            99999999999987653

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=98.50  E-value=1.8e-07  Score=94.81  Aligned_cols=42  Identities=10%  Similarity=0.144  Sum_probs=39.5

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.|++++.++.||++|++|+|+||.....++++|+++|+.
T Consensus       220 ir~~p~~~eLi~~L~~~G~~v~IVSgg~~~~v~~ia~~lg~~  261 (385)
T 4gxt_A          220 IRTLDEMVDLYRSLEENGIDCYIVSASFIDIVRAFATDTNNN  261 (385)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHCTTSS
T ss_pred             ceeCHHHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHhCcc
Confidence            357899999999999999999999999999999999999975

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=98.49  E-value=3e-07  Score=84.66  Aligned_cols=41  Identities=15%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.|+++|+++.++||.+...+..+.+.+|+.
T Consensus        82 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~  122 (219)
T 3kd3_A           82 LLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIP  122 (219)
T ss_dssp             TBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCC
T ss_pred             cCChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCC
Confidence            47899999999999999999999999999999999999984

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=98.49  E-value=8.2e-08  Score=92.40  Aligned_cols=54  Identities=17%  Similarity=0.155  Sum_probs=44.3

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcC---CCHhhHHHHHHHcCccCCCCeEEEeecC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITG---DNIQTAISVAKECGIIDPGETVVDVSAV  398 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TG---r~~~~a~~ia~~lgi~~~~~~~i~~ng~  398 (523)
                      +++.+++++||++|+++|++++++||   |+........+++|++...+.++..++.
T Consensus        21 ~~~~~~~~~ai~~l~~~Gi~v~laTgrs~r~~~~~~~~l~~lg~~~~~~~ii~~~~~   77 (266)
T 3pdw_A           21 TEKIEEACEFVRTLKDRGVPYLFVTNNSSRTPKQVADKLVSFDIPATEEQVFTTSMA   77 (266)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCEEEEESCCSSCHHHHHHHHHHTTCCCCGGGEEEHHHH
T ss_pred             CEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHHHccCHHHH
Confidence            45668999999999999999999988   7777888888999997655666665553

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=98.48  E-value=2.1e-07  Score=84.76  Aligned_cols=40  Identities=15%  Similarity=0.226  Sum_probs=35.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.+++.|++++++|+.+..... ..+.+|+.
T Consensus        85 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~~~~  124 (207)
T 2go7_A           85 VLMPGAREVLAWADESGIQQFIYTHKGNNAFT-ILKDLGVE  124 (207)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHHTCG
T ss_pred             eeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHcCch
Confidence            46799999999999999999999999888777 77777764

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=98.47  E-value=1.1e-07  Score=94.77  Aligned_cols=45  Identities=16%  Similarity=0.255  Sum_probs=37.2

Q ss_pred             hHhHHHHHHHHHHCC--CEEEEEcCChhhHHHHHhC----CccEEecccCCC
Q psy78           476 SDQKQQLVLELQQLG--YYVAMCGDGANDCGALRAA----HAGISLSEAESP  521 (523)
Q Consensus       476 p~~K~~~i~~L~~~~--~~V~a~GDG~ND~~MLk~A----~vGIAMgna~~~  521 (523)
                      +.+|+.+++.+....  +.|++||||.||++|++.|    |+|||| ||.++
T Consensus       205 g~~K~~al~gi~~~~~~~~via~GDs~NDi~ml~~A~~~~g~~vam-na~~~  255 (332)
T 1y8a_A          205 AGEKAKIMRGYCESKGIDFPVVVGDSISDYKMFEAARGLGGVAIAF-NGNEY  255 (332)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCEEEECSGGGHHHHHHHHHTTCEEEEE-SCCHH
T ss_pred             CCCHHHHHhccChhhcCceEEEEeCcHhHHHHHHHHhhcCCeEEEe-cCCHH
Confidence            458999998655431  3399999999999999999    999999 98653

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=98.46  E-value=6.9e-07  Score=81.80  Aligned_cols=103  Identities=11%  Similarity=0.049  Sum_probs=72.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.+++.+.++.|++.|++++++|+.+...+....+.+|+...-+.++......                          
T Consensus        89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~--------------------------  142 (214)
T 3e58_A           89 LIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQGFFDIVLSGEEFK--------------------------  142 (214)
T ss_dssp             HBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGGGCSEEEEGGGCS--------------------------
T ss_pred             CcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcHhheeeEeeccccc--------------------------
Confidence            578999999999999999999999999999999999999853111111100000                          


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGA  505 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~M  505 (523)
                                                                   ...-.|.--..+++.+.-..+++++|||+.||+.|
T Consensus       143 ---------------------------------------------~~kp~~~~~~~~~~~~~~~~~~~~~iGD~~~Di~~  177 (214)
T 3e58_A          143 ---------------------------------------------ESKPNPEIYLTALKQLNVQASRALIIEDSEKGIAA  177 (214)
T ss_dssp             ---------------------------------------------SCTTSSHHHHHHHHHHTCCGGGEEEEECSHHHHHH
T ss_pred             ---------------------------------------------CCCCChHHHHHHHHHcCCChHHeEEEeccHhhHHH
Confidence                                                         00001112223344443346789999999999999


Q ss_pred             HHhCCccEEecccC
Q psy78           506 LRAAHAGISLSEAE  519 (523)
Q Consensus       506 Lk~A~vGIAMgna~  519 (523)
                      .+.||++++|.+..
T Consensus       178 a~~aG~~~~~~~~~  191 (214)
T 3e58_A          178 GVAADVEVWAIRDN  191 (214)
T ss_dssp             HHHTTCEEEEECCS
T ss_pred             HHHCCCEEEEECCC
Confidence            99999999998763

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=98.46  E-value=2.3e-07  Score=85.78  Aligned_cols=39  Identities=10%  Similarity=0.315  Sum_probs=32.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.+++.|+++.++|+.  ..+....+.+|+.
T Consensus        91 ~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~~l~  129 (221)
T 2wf7_A           91 DVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLT  129 (221)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHHHHTTCG
T ss_pred             CCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHcChH
Confidence            46789999999999999999999998  4456677777764

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=98.43  E-value=6.2e-07  Score=83.80  Aligned_cols=42  Identities=12%  Similarity=0.166  Sum_probs=38.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -.+.+++.+.++.|+++|+++.++|+.+...+....+.+|+.
T Consensus       102 ~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~  143 (231)
T 3kzx_A          102 FMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLT  143 (231)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCG
T ss_pred             ceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCch
Confidence            347899999999999999999999999999999999999985

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=98.42  E-value=9.7e-07  Score=82.14  Aligned_cols=42  Identities=12%  Similarity=0.221  Sum_probs=38.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.+++.++++.|+++|+++.++|+.+...+....+.+|+.
T Consensus        95 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~  136 (230)
T 3um9_A           95 LTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLT  136 (230)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCG
T ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCCh
Confidence            457899999999999999999999999998888888988875

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=98.42  E-value=1.3e-07  Score=91.13  Aligned_cols=57  Identities=11%  Similarity=0.141  Sum_probs=46.7

Q ss_pred             eeccCCCcchHHHHHHHHhCCCcEEEEcC---CCHhhHHHHHHHcCccCCCCeEEEeecC
Q psy78           342 ILENRLKPQTEGVIKELKDARVKVVMITG---DNIQTAISVAKECGIIDPGETVVDVSAV  398 (523)
Q Consensus       342 ~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TG---r~~~~a~~ia~~lgi~~~~~~~i~~ng~  398 (523)
                      .-.+++.++++++|++|+++|++++++||   |+........+++|++...+.+++.++.
T Consensus        20 l~~~~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~~~~~~l~~lg~~~~~~~ii~~~~~   79 (268)
T 3qgm_A           20 GKSVTPIPEGVEGVKKLKELGKKIIFVSNNSTRSRRILLERLRSFGLEVGEDEILVATYA   79 (268)
T ss_dssp             EETTEECHHHHHHHHHHHHTTCEEEEEECCSSSCHHHHHHHHHHTTCCCCGGGEEEHHHH
T ss_pred             ECCCEeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHHHHHHHHHHCCCCCCHHHeeCHHHH
Confidence            33556678999999999999999999999   6777778888899997666677776654

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=98.40  E-value=8.5e-07  Score=82.81  Aligned_cols=106  Identities=11%  Similarity=0.071  Sum_probs=73.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      -++.|++.++++.|+++|+++.++|+.+...+..+.+.+|+...-+.++......                         
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~-------------------------  152 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMSGLFDHVLSVDAVR-------------------------  152 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCTTTCSEEEEGGGTT-------------------------
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcHhhcCEEEEecccC-------------------------
Confidence            4567999999999999999999999999988888888888753211111110000                         


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                                                    ...-.|.--..+++.+.-..+++++|||+.||+.
T Consensus       153 ----------------------------------------------~~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~  186 (233)
T 3umb_A          153 ----------------------------------------------LYKTAPAAYALAPRAFGVPAAQILFVSSNGWDAC  186 (233)
T ss_dssp             ----------------------------------------------CCTTSHHHHTHHHHHHTSCGGGEEEEESCHHHHH
T ss_pred             ----------------------------------------------CCCcCHHHHHHHHHHhCCCcccEEEEeCCHHHHH
Confidence                                                          0000111122333444334678999999999999


Q ss_pred             HHHhCCccEEe----cccCCC
Q psy78           505 ALRAAHAGISL----SEAESP  521 (523)
Q Consensus       505 MLk~A~vGIAM----gna~~~  521 (523)
                      |.+.||++++|    +|+.++
T Consensus       187 ~a~~~G~~~~~v~~~~~~~~~  207 (233)
T 3umb_A          187 GATWHGFTTFWINRLGHPPEA  207 (233)
T ss_dssp             HHHHHTCEEEEECTTCCCCCS
T ss_pred             HHHHcCCEEEEEcCCCCCchh
Confidence            99999999999    776654

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=98.38  E-value=4.3e-07  Score=84.65  Aligned_cols=42  Identities=19%  Similarity=0.146  Sum_probs=38.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.+++.+.++.|++.|++++++|+.+...+....+.+|+.
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~  131 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLD  131 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCC
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchh
Confidence            356789999999999999999999999999899999988875

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=98.33  E-value=7.8e-07  Score=83.68  Aligned_cols=42  Identities=12%  Similarity=0.120  Sum_probs=38.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.|++.++++.|++.|++++++|+.+...+..+.+.+|+.
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~  150 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDID  150 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCG
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcH
Confidence            357899999999999999999999999999999999999885

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=98.33  E-value=7.9e-07  Score=85.11  Aligned_cols=41  Identities=24%  Similarity=0.219  Sum_probs=36.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.+++.|+++.++|+.+...+..+.+.+|+.
T Consensus       103 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~  143 (267)
T 1swv_A          103 SPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ  143 (267)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHT
T ss_pred             ccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc
Confidence            46789999999999999999999999988888888887764

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=98.31  E-value=8.5e-07  Score=82.65  Aligned_cols=108  Identities=23%  Similarity=0.213  Sum_probs=75.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      -++.|++.++|+.|+++|++++++||.+...+..+.+.+|+..  ..++... .          .+              
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~--~~~f~~~-~----------~~--------------  137 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPA--TNVFANR-L----------KF--------------  137 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCG--GGEEEEC-E----------EE--------------
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCCc--ccEEeee-E----------EE--------------
Confidence            3688999999999999999999999999999999999999852  0111000 0          00              


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcC-----ChHhHHHHHHHHHHC-C-CEEEEEc
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARM-----SSDQKQQLVLELQQL-G-YYVAMCG  497 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~-----~p~~K~~~i~~L~~~-~-~~V~a~G  497 (523)
                                           ..                  .......+.     .+..|..+++.+.+. + ++++++|
T Consensus       138 ---------------------~~------------------~~~~~~~~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~vG  178 (225)
T 1nnl_A          138 ---------------------YF------------------NGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIG  178 (225)
T ss_dssp             ---------------------CT------------------TSCEEEECTTSGGGSTTHHHHHHHHHHHHHCCSCEEEEE
T ss_pred             ---------------------cC------------------CCcEecCCCCCcccCCCchHHHHHHHHHHcCCCcEEEEe
Confidence                                 00                  000001111     123566666666554 3 6799999


Q ss_pred             CChhhHHHHHhCCccEEeccc
Q psy78           498 DGANDCGALRAAHAGISLSEA  518 (523)
Q Consensus       498 DG~ND~~MLk~A~vGIAMgna  518 (523)
                      |+.||+.|.+.||++|++++.
T Consensus       179 Ds~~Di~~a~~ag~~i~~~~~  199 (225)
T 1nnl_A          179 DGATDMEACPPADAFIGFGGN  199 (225)
T ss_dssp             SSHHHHTTTTTSSEEEEECSS
T ss_pred             CcHHhHHHHHhCCeEEEecCc
Confidence            999999999999999998764

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=98.31  E-value=1.3e-06  Score=81.64  Aligned_cols=99  Identities=9%  Similarity=0.054  Sum_probs=71.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      .+.|++.++++.++ +|++++++|+.+...+....+.+|+...-+.++.....                           
T Consensus       107 ~~~~~~~~~l~~l~-~g~~~~i~sn~~~~~~~~~l~~~~l~~~f~~~~~~~~~---------------------------  158 (240)
T 3qnm_A          107 GLMPHAKEVLEYLA-PQYNLYILSNGFRELQSRKMRSAGVDRYFKKIILSEDL---------------------------  158 (240)
T ss_dssp             CBSTTHHHHHHHHT-TTSEEEEEECSCHHHHHHHHHHHTCGGGCSEEEEGGGT---------------------------
T ss_pred             CcCccHHHHHHHHH-cCCeEEEEeCCchHHHHHHHHHcChHhhceeEEEeccC---------------------------
Confidence            56789999999999 99999999999988888888888875211111110000                           


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCCh-
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGA-  500 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~-  500 (523)
                                                                      -..+.|..+++.+.++    .+++++|||+. 
T Consensus       159 ------------------------------------------------~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~  190 (240)
T 3qnm_A          159 ------------------------------------------------GVLKPRPEIFHFALSATQSELRESLMIGDSWE  190 (240)
T ss_dssp             ------------------------------------------------TCCTTSHHHHHHHHHHTTCCGGGEEEEESCTT
T ss_pred             ------------------------------------------------CCCCCCHHHHHHHHHHcCCCcccEEEECCCch
Confidence                                                            0012334444444443    57899999995 


Q ss_pred             hhHHHHHhCCccEEecccCC
Q psy78           501 NDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       501 ND~~MLk~A~vGIAMgna~~  520 (523)
                      ||+.|.+.||++++|.|...
T Consensus       191 ~Di~~a~~aG~~~~~~~~~~  210 (240)
T 3qnm_A          191 ADITGAHGVGMHQAFYNVTE  210 (240)
T ss_dssp             TTHHHHHHTTCEEEEECCSC
T ss_pred             HhHHHHHHcCCeEEEEcCCC
Confidence            99999999999999999865

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=98.30  E-value=1.3e-06  Score=81.42  Aligned_cols=41  Identities=12%  Similarity=0.113  Sum_probs=36.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCC---HhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDN---IQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~---~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.|+++|+++.++|+.+   ........+.+|+.
T Consensus        99 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~  142 (235)
T 2om6_A           99 LVLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLM  142 (235)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCG
T ss_pred             CcCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcH
Confidence            358999999999999999999999998   77777888888874

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=98.28  E-value=2.6e-06  Score=79.54  Aligned_cols=41  Identities=17%  Similarity=0.275  Sum_probs=37.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.++.|+++|+++.++|+.+...+....+.+|+.
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~  135 (232)
T 1zrn_A           95 APFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLR  135 (232)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChH
Confidence            56799999999999999999999999998888888988875

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=98.25  E-value=3e-06  Score=79.70  Aligned_cols=41  Identities=17%  Similarity=0.212  Sum_probs=37.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus       105 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~  145 (240)
T 2no4_A          105 SAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLD  145 (240)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG
T ss_pred             CCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcH
Confidence            57799999999999999999999999999899999999885

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=98.25  E-value=1e-06  Score=84.51  Aligned_cols=41  Identities=20%  Similarity=0.055  Sum_probs=37.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.++++.|++.|+++.++|+.+...+..+.+.+|+.
T Consensus       111 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~  151 (277)
T 3iru_A          111 QLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQ  151 (277)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHT
T ss_pred             ccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcc
Confidence            57889999999999999999999999998888888888875

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=98.25  E-value=1.5e-06  Score=78.44  Aligned_cols=39  Identities=8%  Similarity=0.221  Sum_probs=33.2

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      +.|++.+.++.|+++|++++++|+.+. .+....+.+|+.
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~~-~~~~~l~~~~~~  121 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRND-QVLEILEKTSIA  121 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHTTCG
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCcH-HHHHHHHHcCCH
Confidence            679999999999999999999999864 566777777764

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=98.24  E-value=3e-06  Score=78.90  Aligned_cols=42  Identities=10%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.|++.++++.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus        82 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~  123 (222)
T 2nyv_A           82 TKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLS  123 (222)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCH
Confidence            356899999999999999999999999988888999999875

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=98.23  E-value=1.7e-06  Score=78.47  Aligned_cols=42  Identities=21%  Similarity=0.256  Sum_probs=38.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCC-HhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDN-IQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~-~~~a~~ia~~lgi~  386 (523)
                      .++.|++.++|++|+++|++++++||++ ...+..+.+.+|+.
T Consensus        67 ~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~~~~~l~~~gl~  109 (187)
T 2wm8_A           67 VRLYPEVPEVLKRLQSLGVPGAAASRTSEIEGANQLLELFDLF  109 (187)
T ss_dssp             ECCCTTHHHHHHHHHHHTCCEEEEECCSCHHHHHHHHHHTTCT
T ss_pred             cCcchhHHHHHHHHHHCCceEEEEeCCCChHHHHHHHHHcCcH
Confidence            3578999999999999999999999999 68899999999985

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=98.23  E-value=1.4e-06  Score=80.19  Aligned_cols=41  Identities=5%  Similarity=-0.030  Sum_probs=33.9

Q ss_pred             HHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           482 LVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       482 ~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      +++.+.-..+++++|||+.||++|.+.||++++|.|+.+++
T Consensus       159 ~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~~~~~~~~~~  199 (211)
T 2i6x_A          159 MIADSGMKPEETLFIDDGPANVATAERLGFHTYCPDNGENW  199 (211)
T ss_dssp             HHHHHCCCGGGEEEECSCHHHHHHHHHTTCEEECCCTTCCC
T ss_pred             HHHHhCCChHHeEEeCCCHHHHHHHHHcCCEEEEECCHHHH
Confidence            34444334678999999999999999999999999988764

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=98.23  E-value=1e-06  Score=79.16  Aligned_cols=39  Identities=21%  Similarity=0.174  Sum_probs=33.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCH---------------hhHHHHHHHcC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNI---------------QTAISVAKECG  384 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~---------------~~a~~ia~~lg  384 (523)
                      ++.|++.++|++|+++|+++.++|+++.               ..+....+.+|
T Consensus        27 ~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g   80 (179)
T 3l8h_A           27 IALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMG   80 (179)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTT
T ss_pred             eECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCC
Confidence            4789999999999999999999999985               44566666777

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=98.22  E-value=2.7e-06  Score=80.52  Aligned_cols=42  Identities=19%  Similarity=0.311  Sum_probs=38.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.|++.++++.|+++|++++++|+.+...+..+.+.+|+.
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~  154 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGID  154 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCch
Confidence            356789999999999999999999999999899999999985

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=98.19  E-value=8.4e-07  Score=85.35  Aligned_cols=55  Identities=20%  Similarity=0.347  Sum_probs=46.6

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHHcCccCCCCeEEEeecC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKECGIIDPGETVVDVSAV  398 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~lgi~~~~~~~i~~ng~  398 (523)
                      .+++.++++++|++|+++|++++++|   ||+........+++|++....+++..++.
T Consensus        31 ~~~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~~~~~~~~~~~lg~~~~~~~ii~~~~~   88 (271)
T 1vjr_A           31 DDSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDDAVVTSGEI   88 (271)
T ss_dssp             TTEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCCCGGGEEEHHHH
T ss_pred             CCEECcCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHcCCCCChhhEEcHHHH
Confidence            36678999999999999999999999   99999999999999987555566666543

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=98.16  E-value=3.9e-06  Score=78.19  Aligned_cols=41  Identities=20%  Similarity=0.164  Sum_probs=37.0

Q ss_pred             CCCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.|++.+.++.|+++ |+++.++|+.+...+....+.+|+.
T Consensus        93 ~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~  134 (234)
T 2hcf_A           93 TLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGID  134 (234)
T ss_dssp             EECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCS
T ss_pred             CcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCch
Confidence            4679999999999999 9999999999988888888888875

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=98.15  E-value=9e-07  Score=84.60  Aligned_cols=49  Identities=16%  Similarity=0.156  Sum_probs=40.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHHcCccCCCCeEEE
Q psy78           346 RLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKECGIIDPGETVVD  394 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~lgi~~~~~~~i~  394 (523)
                      .+.+++.++++.++++|++++++|   ||+...+....+++|+..+...++.
T Consensus        32 ~~~~~~~~a~~~l~~~G~~~~~~t~~~gr~~~~~~~~l~~~g~~~~~~~~~~   83 (271)
T 2x4d_A           32 TAIAGSVEAVARLKRSRLKVRFCTNESAASRAELVGQLQRLGFDISEQEVTA   83 (271)
T ss_dssp             EECTTHHHHHHHHHHSSSEEEEECCCCSSCHHHHHHHHHHTTCCCCGGGEEC
T ss_pred             ccCcCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHCCCCCCHHHeec
Confidence            367889999999999999999999   9999999988889888654344443

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=98.14  E-value=3.2e-06  Score=78.76  Aligned_cols=40  Identities=33%  Similarity=0.435  Sum_probs=36.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.|++.+.++.|++. +++.++|+.+...+....+.+|+.
T Consensus       100 ~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~~~  139 (234)
T 3u26_A          100 ELYPEVVEVLKSLKGK-YHVGMITDSDTEQAMAFLDALGIK  139 (234)
T ss_dssp             CBCTTHHHHHHHHTTT-SEEEEEESSCHHHHHHHHHHTTCG
T ss_pred             CcCcCHHHHHHHHHhC-CcEEEEECCCHHHHHHHHHHcCcH
Confidence            4679999999999999 999999999998888888888875

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=98.14  E-value=1.5e-06  Score=82.30  Aligned_cols=34  Identities=18%  Similarity=0.211  Sum_probs=29.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHH
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAIS  378 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~  378 (523)
                      -.+.+++.++++.|+++|+++.++|+.+...+..
T Consensus       111 ~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~  144 (250)
T 3l5k_A          111 AALMPGAEKLIIHLRKHGIPFALATSSRSASFDM  144 (250)
T ss_dssp             CCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHH
Confidence            3578999999999999999999999998765544

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=98.12  E-value=3.1e-06  Score=79.79  Aligned_cols=41  Identities=15%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.++.|+++|+++.++|+.+...+..+.+.+|+.
T Consensus       110 ~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~  150 (240)
T 2hi0_A          110 GPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPG  150 (240)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHSTT
T ss_pred             CcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc
Confidence            35689999999999999999999999888888888888874

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=98.12  E-value=1.3e-06  Score=82.14  Aligned_cols=46  Identities=15%  Similarity=0.239  Sum_probs=35.4

Q ss_pred             cchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHHcCccCCCCeEEE
Q psy78           349 PQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKECGIIDPGETVVD  394 (523)
Q Consensus       349 ~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~lgi~~~~~~~i~  394 (523)
                      +.++++++.+++.|++++++|   ||+.........++|++.....++.
T Consensus        22 ~~~~~~~~~l~~~g~~~~~~t~~~g~~~~~~~~~~~~~g~~~~~~~~~~   70 (250)
T 2c4n_A           22 PGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYT   70 (250)
T ss_dssp             TTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCGGGEEE
T ss_pred             cCHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEc
Confidence            334899999999999999999   8888888887777887533333433

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=98.12  E-value=2.4e-06  Score=79.30  Aligned_cols=90  Identities=19%  Similarity=0.179  Sum_probs=69.3

Q ss_pred             CCCcchHHHHHHHHhCC-CcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           346 RLKPQTEGVIKELKDAR-VKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~G-i~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      ++.+++.+.++.|+++| +++.++|+.+........+.+|+...-+                                  
T Consensus       105 ~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~~~~~f~----------------------------------  150 (234)
T 3ddh_A          105 ELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLSPYFD----------------------------------  150 (234)
T ss_dssp             CBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCGGGCS----------------------------------
T ss_pred             CcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhCcHhhhh----------------------------------
Confidence            56889999999999999 9999999998888888888888742110                                  


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCCh
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGA  500 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~  500 (523)
                                                                  .+...  ++.|..+++.+.++    .+++++|||+.
T Consensus       151 --------------------------------------------~~~~~--~kpk~~~~~~~~~~lgi~~~~~i~iGD~~  184 (234)
T 3ddh_A          151 --------------------------------------------HIEVM--SDKTEKEYLRLLSILQIAPSELLMVGNSF  184 (234)
T ss_dssp             --------------------------------------------EEEEE--SCCSHHHHHHHHHHHTCCGGGEEEEESCC
T ss_pred             --------------------------------------------eeeec--CCCCHHHHHHHHHHhCCCcceEEEECCCc
Confidence                                                        01111  12355555555553    67899999996


Q ss_pred             -hhHHHHHhCCccEEe
Q psy78           501 -NDCGALRAAHAGISL  515 (523)
Q Consensus       501 -ND~~MLk~A~vGIAM  515 (523)
                       ||+.|.+.||++++|
T Consensus       185 ~~Di~~a~~aG~~~v~  200 (234)
T 3ddh_A          185 KSDIQPVLSLGGYGVH  200 (234)
T ss_dssp             CCCCHHHHHHTCEEEE
T ss_pred             HHHhHHHHHCCCeEEE
Confidence             999999999999988

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=98.10  E-value=8.6e-06  Score=76.51  Aligned_cols=41  Identities=12%  Similarity=0.229  Sum_probs=33.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.+++.+.++.|+++|+++.++|+.+...+....+. |+.
T Consensus       107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~  147 (247)
T 3dv9_A          107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFP  147 (247)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HST
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHH
Confidence            45779999999999999999999999988877777776 774

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=98.09  E-value=2.9e-06  Score=80.20  Aligned_cols=94  Identities=19%  Similarity=0.167  Sum_probs=68.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.+++.++++.|++. ++++++|+.+...+..+.+.+|+.-  +.++.                               
T Consensus       120 ~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~g~~f--~~~~~-------------------------------  165 (254)
T 3umc_A          120 RPWPDTLAGMHALKAD-YWLAALSNGNTALMLDVARHAGLPW--DMLLC-------------------------------  165 (254)
T ss_dssp             EECTTHHHHHHHHTTT-SEEEECCSSCHHHHHHHHHHHTCCC--SEECC-------------------------------
T ss_pred             CCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHHHHcCCCc--ceEEe-------------------------------
Confidence            4578999999999986 9999999999988888888888730  00000                               


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHH----CCCEEEEEcCChh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQ----LGYYVAMCGDGAN  501 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~----~~~~V~a~GDG~N  501 (523)
                                           .+   .                    --..+.|..+++.+.+    ..+++++|||+.|
T Consensus       166 ---------------------~~---~--------------------~~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~  201 (254)
T 3umc_A          166 ---------------------AD---L--------------------FGHYKPDPQVYLGACRLLDLPPQEVMLCAAHNY  201 (254)
T ss_dssp             ---------------------HH---H--------------------HTCCTTSHHHHHHHHHHHTCCGGGEEEEESCHH
T ss_pred             ---------------------ec---c--------------------cccCCCCHHHHHHHHHHcCCChHHEEEEcCchH
Confidence                                 00   0                    0011234455554444    3678999999999


Q ss_pred             hHHHHHhCCccEEecc
Q psy78           502 DCGALRAAHAGISLSE  517 (523)
Q Consensus       502 D~~MLk~A~vGIAMgn  517 (523)
                      |++|.+.||++++|.|
T Consensus       202 Di~~a~~aG~~~~~~~  217 (254)
T 3umc_A          202 DLKAARALGLKTAFIA  217 (254)
T ss_dssp             HHHHHHHTTCEEEEEC
T ss_pred             hHHHHHHCCCeEEEEe
Confidence            9999999999999998

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=98.08  E-value=6.5e-06  Score=77.49  Aligned_cols=41  Identities=10%  Similarity=0.195  Sum_probs=34.8

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.+++.+.++.|+++|+++.++|+.+...+....+. |+.
T Consensus       108 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~  148 (243)
T 3qxg_A          108 AERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFP  148 (243)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HST
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHH
Confidence            35779999999999999999999999987777666666 764

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=98.07  E-value=4.4e-06  Score=77.04  Aligned_cols=95  Identities=19%  Similarity=0.149  Sum_probs=70.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.+.++.|++ |+++.++|+.+...+....+.+|+...-+.+                                 
T Consensus        84 ~~~~g~~~~l~~L~~-~~~l~i~T~~~~~~~~~~l~~~gl~~~f~~i---------------------------------  129 (210)
T 2ah5_A           84 QLFPQIIDLLEELSS-SYPLYITTTKDTSTAQDMAKNLEIHHFFDGI---------------------------------  129 (210)
T ss_dssp             EECTTHHHHHHHHHT-TSCEEEEEEEEHHHHHHHHHHTTCGGGCSEE---------------------------------
T ss_pred             CCCCCHHHHHHHHHc-CCeEEEEeCCCHHHHHHHHHhcCchhheeee---------------------------------
Confidence            467999999999999 9999999999888888888888885211111                                 


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGAN  501 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~N  501 (523)
                                                                  +..+-.++.|..+.+.+.++    .+++++|||+.|
T Consensus       130 --------------------------------------------~~~~~~~Kp~p~~~~~~~~~lg~~p~~~~~vgDs~~  165 (210)
T 2ah5_A          130 --------------------------------------------YGSSPEAPHKADVIHQALQTHQLAPEQAIIIGDTKF  165 (210)
T ss_dssp             --------------------------------------------EEECSSCCSHHHHHHHHHHHTTCCGGGEEEEESSHH
T ss_pred             --------------------------------------------ecCCCCCCCChHHHHHHHHHcCCCcccEEEECCCHH
Confidence                                                        11121123445555554443    578999999999


Q ss_pred             hHHHHHhCCc---cEEeccc
Q psy78           502 DCGALRAAHA---GISLSEA  518 (523)
Q Consensus       502 D~~MLk~A~v---GIAMgna  518 (523)
                      |+.|-+.||+   +|++|++
T Consensus       166 Di~~a~~aG~~~i~v~~~~~  185 (210)
T 2ah5_A          166 DMLGARETGIQKLAITWGFG  185 (210)
T ss_dssp             HHHHHHHHTCEEEEESSSSS
T ss_pred             HHHHHHHCCCcEEEEcCCCC
Confidence            9999999999   8888875

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=98.07  E-value=2.3e-06  Score=78.60  Aligned_cols=40  Identities=13%  Similarity=0.233  Sum_probs=35.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.++.|+++ +++.++|+.+...+..+.+.+|+.
T Consensus        83 ~~~~~~~~~l~~l~~~-~~~~i~s~~~~~~~~~~l~~~~l~  122 (209)
T 2hdo_A           83 ELYPGITSLFEQLPSE-LRLGIVTSQRRNELESGMRSYPFM  122 (209)
T ss_dssp             EECTTHHHHHHHSCTT-SEEEEECSSCHHHHHHHHTTSGGG
T ss_pred             CcCCCHHHHHHHHHhc-CcEEEEeCCCHHHHHHHHHHcChH
Confidence            4689999999999999 999999999988888888888774

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=98.06  E-value=1.3e-05  Score=73.08  Aligned_cols=40  Identities=15%  Similarity=0.261  Sum_probs=35.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.|++.+ ++.|+++ +++.++|+.+...+..+.+.+|+.
T Consensus        73 ~~~~~~~~~-l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~l~  112 (201)
T 2w43_A           73 LKAYEDTKY-LKEISEI-AEVYALSNGSINEVKQHLERNGLL  112 (201)
T ss_dssp             CEECGGGGG-HHHHHHH-SEEEEEESSCHHHHHHHHHHTTCG
T ss_pred             cccCCChHH-HHHHHhC-CeEEEEeCcCHHHHHHHHHHCCcH
Confidence            356799999 9999999 999999999988888889999875

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=98.04  E-value=3.9e-06  Score=77.88  Aligned_cols=38  Identities=5%  Similarity=0.082  Sum_probs=31.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.+++.+.++.++.   +++++|+.+...+..+.+.+|+.
T Consensus        87 ~~~~~~~~~l~~l~~---~~~i~s~~~~~~~~~~l~~~~l~  124 (229)
T 2fdr_A           87 KIIDGVKFALSRLTT---PRCICSNSSSHRLDMMLTKVGLK  124 (229)
T ss_dssp             CBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHHHHTTCG
T ss_pred             ccCcCHHHHHHHhCC---CEEEEECCChhHHHHHHHhCChH
Confidence            456788888888874   89999999988888888888874

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=98.03  E-value=5.6e-06  Score=77.91  Aligned_cols=114  Identities=12%  Similarity=0.169  Sum_probs=76.1

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      -++.|++.++|+.|+++|++++++|+.+...+..+++  |+... +.++........    ..+...             
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~--~l~~~-~~v~~~~~~~~~----~~~~~~-------------  135 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLE--GIVEK-DRIYCNHASFDN----DYIHID-------------  135 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHT--TTSCG-GGEEEEEEECSS----SBCEEE-------------
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHh--cCCCC-CeEEeeeeEEcC----CceEEe-------------
Confidence            4688999999999999999999999999888888877  76432 333322211000    000000             


Q ss_pred             cccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHH
Q psy78           425 LNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCG  504 (523)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~  504 (523)
                                          . .       +  +.  +      ..+.+.....|..+++.+....++++++||+.||+.
T Consensus       136 --------------------~-~-------k--p~--p------~~~~~~~~~~K~~~~~~~~~~~~~~~~vGDs~~Di~  177 (236)
T 2fea_A          136 --------------------W-P-------H--SC--K------GTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVE  177 (236)
T ss_dssp             --------------------C-T-------T--CC--C------TTCCSCCSSCHHHHHHHHCCTTCEEEEEECCGGGHH
T ss_pred             --------------------c-C-------C--CC--c------cccccccCCcHHHHHHHHhccCCeEEEEeCChHHHH
Confidence                                0 0       0  00  0      000111345788899888767889999999999999


Q ss_pred             HHHhCCccEEec
Q psy78           505 ALRAAHAGISLS  516 (523)
Q Consensus       505 MLk~A~vGIAMg  516 (523)
                      |.+.||+.++.+
T Consensus       178 ~a~~aG~~~~~~  189 (236)
T 2fea_A          178 AAKLSDLCFARD  189 (236)
T ss_dssp             HHHTCSEEEECH
T ss_pred             HHHhCCeeeech
Confidence            999999988753

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=98.03  E-value=1.2e-05  Score=73.02  Aligned_cols=40  Identities=8%  Similarity=0.181  Sum_probs=36.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.|++.+.++.|+++| +++++|+.+...+....+.+|+.
T Consensus        86 ~~~~~~~~~l~~l~~~g-~~~i~s~~~~~~~~~~l~~~~~~  125 (200)
T 3cnh_A           86 QPRPEVLALARDLGQRY-RMYSLNNEGRDLNEYRIRTFGLG  125 (200)
T ss_dssp             CBCHHHHHHHHHHTTTS-EEEEEECCCHHHHHHHHHHHTGG
T ss_pred             ccCccHHHHHHHHHHcC-CEEEEeCCcHHHHHHHHHhCCHH
Confidence            47799999999999999 99999999998888888888875

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=98.03  E-value=5.3e-06  Score=78.18  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=69.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.+++.++++.|++. +++.++|+.+...+..+.+.+|+.-        +...                          
T Consensus       116 ~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~~~f--------~~~~--------------------------  160 (254)
T 3umg_A          116 TPWPDSVPGLTAIKAE-YIIGPLSNGNTSLLLDMAKNAGIPW--------DVII--------------------------  160 (254)
T ss_dssp             CBCTTHHHHHHHHHHH-SEEEECSSSCHHHHHHHHHHHTCCC--------SCCC--------------------------
T ss_pred             cCCcCHHHHHHHHHhC-CeEEEEeCCCHHHHHHHHHhCCCCe--------eEEE--------------------------
Confidence            4678999999999997 9999999999988888888888730        0000                          


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChh
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGAN  501 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~N  501 (523)
                                          ..   +.                  .  ...+.|..+++.+.++    .+++++|||+.|
T Consensus       161 --------------------~~---~~------------------~--~~~kp~~~~~~~~~~~lgi~~~~~~~iGD~~~  197 (254)
T 3umg_A          161 --------------------GS---DI------------------N--RKYKPDPQAYLRTAQVLGLHPGEVMLAAAHNG  197 (254)
T ss_dssp             --------------------CH---HH------------------H--TCCTTSHHHHHHHHHHTTCCGGGEEEEESCHH
T ss_pred             --------------------Ec---Cc------------------C--CCCCCCHHHHHHHHHHcCCChHHEEEEeCChH
Confidence                                00   00                  0  0012234455554443    578999999999


Q ss_pred             hHHHHHhCCccEEeccc
Q psy78           502 DCGALRAAHAGISLSEA  518 (523)
Q Consensus       502 D~~MLk~A~vGIAMgna  518 (523)
                      |+.|.+.||++++|.|.
T Consensus       198 Di~~a~~aG~~~~~~~~  214 (254)
T 3umg_A          198 DLEAAHATGLATAFILR  214 (254)
T ss_dssp             HHHHHHHTTCEEEEECC
T ss_pred             hHHHHHHCCCEEEEEec
Confidence            99999999999999984

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=98.03  E-value=1.3e-05  Score=76.16  Aligned_cols=39  Identities=13%  Similarity=0.256  Sum_probs=35.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++++.|+  |+++.++|+.+...+..+.+.+|+.
T Consensus        93 ~~~~~~~~~l~~l~--g~~~~i~t~~~~~~~~~~l~~~gl~  131 (253)
T 1qq5_A           93 TPYPDAAQCLAELA--PLKRAILSNGAPDMLQALVANAGLT  131 (253)
T ss_dssp             CBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHHHHTTCG
T ss_pred             CCCccHHHHHHHHc--CCCEEEEeCcCHHHHHHHHHHCCch
Confidence            57799999999999  9999999999999898999999875

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=98.00  E-value=1.9e-05  Score=74.27  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=37.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.+++.+.++.|+++|+++.++|+.+...+....+.+|+.
T Consensus        94 ~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~  134 (241)
T 2hoq_A           94 REVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELD  134 (241)
T ss_dssp             CBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCG
T ss_pred             CCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcH
Confidence            46799999999999999999999999988888888888875

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=98.00  E-value=2.2e-06  Score=82.22  Aligned_cols=52  Identities=17%  Similarity=0.341  Sum_probs=45.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHHcCccCCCCeEEEeecC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKECGIIDPGETVVDVSAV  398 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~lgi~~~~~~~i~~ng~  398 (523)
                      .+ ++++++|++++++|++++++|   ||+...+....+++|+....+.+++.++.
T Consensus        22 ~i-~~~~eal~~l~~~G~~vvl~Tn~~gr~~~~~~~~l~~lg~~~~~~~ii~~~~~   76 (264)
T 3epr_A           22 RI-PAGERFIERLQEKGIPYMLVTNNTTRTPESVQEMLRGFNVETPLETIYTATMA   76 (264)
T ss_dssp             EC-HHHHHHHHHHHHHTCCEEEEECCCSSCHHHHHHHHHTTTCCCCGGGEEEHHHH
T ss_pred             EC-cCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCChhheecHHHH
Confidence            46 899999999999999999999   88888888999999997666677776664

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=97.99  E-value=4.3e-06  Score=79.60  Aligned_cols=42  Identities=10%  Similarity=0.068  Sum_probs=38.0

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -.+.+++.++++.|+++|++++++|+.+...+..+.+.+|+.
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~  150 (259)
T 4eek_A          109 VTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLT  150 (259)
T ss_dssp             CEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCH
T ss_pred             CCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChH
Confidence            456789999999999999999999999999999999988874

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=97.97  E-value=1.7e-05  Score=76.52  Aligned_cols=41  Identities=15%  Similarity=-0.010  Sum_probs=36.6

Q ss_pred             CCCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.|++. |+++.++|+.+...+....+.+|+.
T Consensus       114 ~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~  155 (275)
T 2qlt_A          114 IEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIK  155 (275)
T ss_dssp             EECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCC
T ss_pred             CcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCC
Confidence            3578999999999999 9999999999998888888888874

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=97.92  E-value=2e-05  Score=75.42  Aligned_cols=103  Identities=13%  Similarity=0.078  Sum_probs=70.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.++++.|+++|+++.++|+.+. .+..+.+.+|+...-+.++...                             
T Consensus       106 ~~~~~~~~~l~~l~~~g~~~~i~tn~~~-~~~~~l~~~gl~~~f~~~~~~~-----------------------------  155 (263)
T 3k1z_A          106 QVLDGAEDTLRECRTRGLRLAVISNFDR-RLEGILGGLGLREHFDFVLTSE-----------------------------  155 (263)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEEESCCT-THHHHHHHTTCGGGCSCEEEHH-----------------------------
T ss_pred             eECcCHHHHHHHHHhCCCcEEEEeCCcH-HHHHHHHhCCcHHhhhEEEeec-----------------------------
Confidence            4679999999999999999999999766 4678888888752111111000                             


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCCh-hhHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGA-NDCG  504 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~-ND~~  504 (523)
                                             .   .                ....-.|.--..+++.+.-..+++++|||+. ||+.
T Consensus       156 -----------------------~---~----------------~~~Kp~~~~~~~~~~~~g~~~~~~~~vGD~~~~Di~  193 (263)
T 3k1z_A          156 -----------------------A---A----------------GWPKPDPRIFQEALRLAHMEPVVAAHVGDNYLCDYQ  193 (263)
T ss_dssp             -----------------------H---H----------------SSCTTSHHHHHHHHHHHTCCGGGEEEEESCHHHHTH
T ss_pred             -----------------------c---c----------------CCCCCCHHHHHHHHHHcCCCHHHEEEECCCcHHHHH
Confidence                                   0   0                0000112223334444444468899999997 9999


Q ss_pred             HHHhCCccEEecccCC
Q psy78           505 ALRAAHAGISLSEAES  520 (523)
Q Consensus       505 MLk~A~vGIAMgna~~  520 (523)
                      |.+.||++++|.+...
T Consensus       194 ~a~~aG~~~i~~~~~~  209 (263)
T 3k1z_A          194 GPRAVGMHSFLVVGPQ  209 (263)
T ss_dssp             HHHTTTCEEEEECCSS
T ss_pred             HHHHCCCEEEEEcCCC
Confidence            9999999999998764

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=97.86  E-value=2.1e-05  Score=72.81  Aligned_cols=41  Identities=12%  Similarity=0.102  Sum_probs=36.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCC---------------HhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDN---------------IQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~---------------~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|++|+++|++++++|+++               ...+..+.+++|+.
T Consensus        50 ~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  105 (211)
T 2gmw_A           50 EFIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVD  105 (211)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHHHHHHHHHHHHHHcCCc
Confidence            678999999999999999999999999               46677788888874

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=97.86  E-value=2.6e-06  Score=77.87  Aligned_cols=41  Identities=7%  Similarity=-0.018  Sum_probs=33.1

Q ss_pred             HHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           481 QLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       481 ~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      .+++.+.-..+++++|||+.||+.|.+.||++.++.++.++
T Consensus       156 ~~~~~~~~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~~~  196 (206)
T 2b0c_A          156 HVLQAEGFSPSDTVFFDDNADNIEGANQLGITSILVKDKTT  196 (206)
T ss_dssp             HHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEECCSTTH
T ss_pred             HHHHHcCCCHHHeEEeCCCHHHHHHHHHcCCeEEEecCCch
Confidence            44444444467899999999999999999999999887653

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=97.83  E-value=2.3e-05  Score=73.08  Aligned_cols=42  Identities=7%  Similarity=-0.039  Sum_probs=34.5

Q ss_pred             HHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           481 QLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       481 ~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      .+++.+.-..+++++|||+.||+.|.+.||+++++.|+.+++
T Consensus       181 ~~~~~~g~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~~~~~  222 (229)
T 4dcc_A          181 AVTEDAGIDPKETFFIDDSEINCKVAQELGISTYTPKAGEDW  222 (229)
T ss_dssp             HHHHHHTCCGGGEEEECSCHHHHHHHHHTTCEEECCCTTCCG
T ss_pred             HHHHHcCCCHHHeEEECCCHHHHHHHHHcCCEEEEECCHHHH
Confidence            344444444688999999999999999999999999987764

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=97.83  E-value=9.1e-06  Score=68.99  Aligned_cols=41  Identities=12%  Similarity=0.083  Sum_probs=36.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+++++|+++|+++.++|+++...+..+.+.+|+.
T Consensus        18 ~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~   58 (137)
T 2pr7_A           18 EDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETN   58 (137)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHT
T ss_pred             ccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChH
Confidence            46789999999999999999999999998888888888875

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=97.81  E-value=6.1e-05  Score=70.03  Aligned_cols=41  Identities=15%  Similarity=0.280  Sum_probs=36.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -.+.|++.++++.|++. +++.++|+.+...+....+.+|+.
T Consensus       102 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~~~~~~~~l~~~~l~  142 (238)
T 3ed5_A          102 HQLIDGAFDLISNLQQQ-FDLYIVTNGVSHTQYKRLRDSGLF  142 (238)
T ss_dssp             CCBCTTHHHHHHHHHTT-SEEEEEECSCHHHHHHHHHHTTCG
T ss_pred             CCCCccHHHHHHHHHhc-CeEEEEeCCCHHHHHHHHHHcChH
Confidence            35679999999999999 999999999998888888888875

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=97.78  E-value=3.9e-05  Score=72.49  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=35.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.++.|+ +|+++.++|+.+...+....+.+|+.
T Consensus       112 ~~~~~~~~~l~~l~-~~~~~~i~t~~~~~~~~~~l~~~~l~  151 (251)
T 2pke_A          112 EVIAGVREAVAAIA-ADYAVVLITKGDLFHQEQKIEQSGLS  151 (251)
T ss_dssp             CBCTTHHHHHHHHH-TTSEEEEEEESCHHHHHHHHHHHSGG
T ss_pred             CcCccHHHHHHHHH-CCCEEEEEeCCCHHHHHHHHHHcCcH
Confidence            56799999999999 99999999999988888888888874

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=97.75  E-value=2.8e-05  Score=72.24  Aligned_cols=42  Identities=24%  Similarity=0.336  Sum_probs=36.9

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCH---------------hhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNI---------------QTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~---------------~~a~~ia~~lgi~  386 (523)
                      .++.|++.++|++|+++|++++++|+++.               ..+....+++|+.
T Consensus        55 ~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~  111 (218)
T 2o2x_A           55 IVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLELLREEGVF  111 (218)
T ss_dssp             CCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             CeECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHHHHHHHcCCc
Confidence            46789999999999999999999999988               5777788888863

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=97.70  E-value=5e-05  Score=70.60  Aligned_cols=37  Identities=16%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      ++.+++.++++.|++ |+++.++|+.+...+....+.+
T Consensus        99 ~~~~~~~~~l~~l~~-~~~~~i~tn~~~~~~~~~l~~l  135 (240)
T 3smv_A           99 PAFPDTVEALQYLKK-HYKLVILSNIDRNEFKLSNAKL  135 (240)
T ss_dssp             CBCTTHHHHHHHHHH-HSEEEEEESSCHHHHHHHHTTT
T ss_pred             CCCCcHHHHHHHHHh-CCeEEEEeCCChhHHHHHHHhc
Confidence            578999999999999 8999999999887776665543

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=97.56  E-value=0.00033  Score=63.31  Aligned_cols=42  Identities=17%  Similarity=0.290  Sum_probs=37.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCH---hhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNI---QTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~---~~a~~ia~~lgi~  386 (523)
                      -++.|++.++|++|+++|+++.++|+.+.   ..+..+.+.+|+.
T Consensus        33 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~l~~~gl~   77 (189)
T 3ib6_A           33 VVLRKNAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGII   77 (189)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHHTTCG
T ss_pred             ceeCcCHHHHHHHHHHCCCEEEEEECCCccchHHHHHHHHhcCch
Confidence            35789999999999999999999999876   7888889999985

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=97.28  E-value=0.0011  Score=60.66  Aligned_cols=41  Identities=15%  Similarity=0.267  Sum_probs=38.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++++.|+++|+++.++|+.+...+....+.+|+.
T Consensus        84 ~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~  124 (216)
T 3kbb_A           84 KENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLE  124 (216)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG
T ss_pred             ccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCC
Confidence            46789999999999999999999999999999999999985

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=97.27  E-value=7.8e-05  Score=73.03  Aligned_cols=53  Identities=11%  Similarity=0.098  Sum_probs=41.6

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHHcCcc-CCCCeEEEee
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKECGII-DPGETVVDVS  396 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~lgi~-~~~~~~i~~n  396 (523)
                      .+++-+++.+++++|+++|++++++|   ||+........+.+|++ .....++..+
T Consensus        35 ~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~~~~~~~~~~~~g~~~~~~~~i~~~~   91 (306)
T 2oyc_A           35 GERAVPGAPELLERLARAGKAALFVSNNSRRARPELALRFARLGFGGLRAEQLFSSA   91 (306)
T ss_dssp             TTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCCSCCGGGEEEHH
T ss_pred             CCccCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHhcCCCcCChhhEEcHH
Confidence            45677899999999999999999999   58887777788888886 3333444433

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=97.27  E-value=0.0012  Score=62.77  Aligned_cols=40  Identities=20%  Similarity=0.396  Sum_probs=36.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|+.|++ |+++.++|+.+...+....+.+|+.
T Consensus       121 ~~~~g~~~~L~~L~~-~~~l~i~Tn~~~~~~~~~l~~~gl~  160 (260)
T 2gfh_A          121 ILADDVKAMLTELRK-EVRLLLLTNGDRQTQREKIEACACQ  160 (260)
T ss_dssp             CCCHHHHHHHHHHHT-TSEEEEEECSCHHHHHHHHHHHTCG
T ss_pred             CCCcCHHHHHHHHHc-CCcEEEEECcChHHHHHHHHhcCHH
Confidence            578999999999998 5999999999998888888999985

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=97.23  E-value=0.00029  Score=66.64  Aligned_cols=53  Identities=15%  Similarity=0.211  Sum_probs=38.5

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHHcCccCCCCeEEEee
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKECGIIDPGETVVDVS  396 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~lgi~~~~~~~i~~n  396 (523)
                      .++.-+++.++++.++++|++++++|   |++........+++|++.+...++..+
T Consensus        21 ~~~~~~~~~~ai~~l~~~G~~~~~~t~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~   76 (259)
T 2ho4_A           21 EDAAVPGAQEALKRLRATSVMVRFVTNTTKETKKDLLERLKKLEFEISEDEIFTSL   76 (259)
T ss_dssp             ---CCTTHHHHHHHHHTSSCEEEEEECCSSCCHHHHHHHHHHTTCCCCGGGEEEHH
T ss_pred             CCEeCcCHHHHHHHHHHCCCeEEEEeCCCCcCHHHHHHHHHHcCCCccHHHeecHH
Confidence            45555889999999999999999999   666666666677788865544555443

>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide binding, ATP binding, MGTA, membra protein, cell inner membrane; 1.60A {Escherichia coli}

Probab=97.22  E-value=0.00027  Score=62.81  Aligned_cols=54  Identities=26%  Similarity=0.326  Sum_probs=42.0

Q ss_pred             cchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccC
Q psy78           288 FVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENR  346 (523)
Q Consensus       288 ~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~  346 (523)
                      ..++.+.+.++.++++|+|||++|+|.++....     ......|+||+|+|+++|-|.
T Consensus       112 ~~~~~i~~~~~~la~~GlRvLavA~k~~~~~~~-----~~~~~~E~~L~f~G~~g~~~~  165 (170)
T 3gwi_A          112 IMLRKIKRVTDTLNRQGLRVVAVATKYLPAREG-----DYQRADESDLILEGYIAFLDH  165 (170)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEEEEEECCSS-----CCCGGGSCSEEEEEEEEEEC-
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEEEEECCCCcc-----ccCccccCCcEEEehhccccc
Confidence            345678889999999999999999999864321     112246999999999999875

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=97.16  E-value=0.00055  Score=63.20  Aligned_cols=28  Identities=14%  Similarity=0.032  Sum_probs=25.3

Q ss_pred             CCCEEEEEcCCh-hhHHHHHhCCccEEec
Q psy78           489 LGYYVAMCGDGA-NDCGALRAAHAGISLS  516 (523)
Q Consensus       489 ~~~~V~a~GDG~-ND~~MLk~A~vGIAMg  516 (523)
                      ..+++++|||+. ||+.|.+.||+++++-
T Consensus       171 ~~~~~~~vGD~~~~Di~~a~~aG~~~~~v  199 (230)
T 3vay_A          171 DASAAVHVGDHPSDDIAGAQQAGMRAIWY  199 (230)
T ss_dssp             CGGGEEEEESCTTTTHHHHHHTTCEEEEE
T ss_pred             CchheEEEeCChHHHHHHHHHCCCEEEEE
Confidence            367899999997 9999999999999883

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=97.09  E-value=0.00039  Score=65.92  Aligned_cols=43  Identities=7%  Similarity=0.091  Sum_probs=37.0

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHh----hHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQ----TAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~----~a~~ia~~lgi~  386 (523)
                      +.++.|++.+.++.|+++|++++++|||+..    .+..-.+++|+.
T Consensus        99 ~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~~~r~~T~~~L~~lGi~  145 (260)
T 3pct_A           99 QSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKAGTVDDMKRLGFT  145 (260)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEETTTSHHHHHHHHHHHTCC
T ss_pred             CCCCCccHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHHcCcC
Confidence            3567899999999999999999999999764    666777888985

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.93  E-value=0.0025  Score=61.89  Aligned_cols=40  Identities=13%  Similarity=0.129  Sum_probs=32.4

Q ss_pred             eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhH---HHHHHH
Q psy78           343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTA---ISVAKE  382 (523)
Q Consensus       343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a---~~ia~~  382 (523)
                      .+.++.|++.++|+.|+++|+++.++||++...+   ....+.
T Consensus       185 ~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~~~~~~l~~  227 (301)
T 1ltq_A          185 DTDVINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRM  227 (301)
T ss_dssp             GGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSSTTHHHHH
T ss_pred             cccCCChHHHHHHHHHHHCCCeEEEEeCCCcccchhHHHHHHh
Confidence            3567889999999999999999999999986533   444555

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=96.88  E-value=0.0028  Score=59.73  Aligned_cols=40  Identities=25%  Similarity=0.422  Sum_probs=33.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .++.|++.+.++.|+++|+++.++|++..  +....+.+|+.
T Consensus       115 ~~~~p~~~~ll~~Lk~~g~~i~i~~~~~~--~~~~L~~~gl~  154 (250)
T 4gib_A          115 NDILPGIESLLIDVKSNNIKIGLSSASKN--AINVLNHLGIS  154 (250)
T ss_dssp             GGSCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHHTCG
T ss_pred             cccchhHHHHHHHHHhcccccccccccch--hhhHhhhcccc
Confidence            45789999999999999999999887643  55678888885

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=96.80  E-value=0.00077  Score=63.91  Aligned_cols=43  Identities=19%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHh----hHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQ----TAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~----~a~~ia~~lgi~  386 (523)
                      +.++.|++.+.++.|+++|++++++|||+..    .+..-.+.+|+.
T Consensus        99 ~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~~~r~~T~~~L~~lGi~  145 (262)
T 3ocu_A           99 QSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFN  145 (262)
T ss_dssp             CCEECTTHHHHHHHHHHTTEEEEEEEEEETTTTHHHHHHHHHHHTCS
T ss_pred             CCCCCccHHHHHHHHHHCCCeEEEEeCCCccchHHHHHHHHHHcCcC
Confidence            3567899999999999999999999999764    566667888885

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=96.76  E-value=0.0017  Score=63.95  Aligned_cols=38  Identities=16%  Similarity=0.207  Sum_probs=35.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      .+.++.++.++.++++|++|+|+||-+..-++++|..+
T Consensus       143 ~~~~~~~~l~~~l~~~G~~v~ivSas~~~~v~~~a~~~  180 (327)
T 4as2_A          143 RVFSGQRELYNKLMENGIEVYVISAAHEELVRMVAADP  180 (327)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHTCG
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhhc
Confidence            57899999999999999999999999999999999885

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=96.75  E-value=0.0019  Score=58.75  Aligned_cols=35  Identities=20%  Similarity=0.292  Sum_probs=30.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHH
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVA  380 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia  380 (523)
                      ++.|++.++|+.|+++|+++.++||.+...+..+.
T Consensus        36 ~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~~~~   70 (196)
T 2oda_A           36 QLTPGAQNALKALRDQGMPCAWIDELPEALSTPLA   70 (196)
T ss_dssp             SBCTTHHHHHHHHHHHTCCEEEECCSCHHHHHHHH
T ss_pred             CcCcCHHHHHHHHHHCCCEEEEEcCChHHHHHHhc
Confidence            56799999999999999999999999887764443

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=96.73  E-value=0.0013  Score=62.72  Aligned_cols=42  Identities=14%  Similarity=0.189  Sum_probs=34.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHh---hHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQ---TAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~---~a~~ia~~lgi~  386 (523)
                      .++.|++.++|+.|+++|++++++|||+..   .+....+.+|+.
T Consensus       100 ~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~~~~~~~~~L~~~Gl~  144 (258)
T 2i33_A          100 AEALPGSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERVGAP  144 (258)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEGGGHHHHHHHHHHHTCS
T ss_pred             CCcCccHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHHHHcCCC
Confidence            467899999999999999999999999944   444555677875

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=96.72  E-value=0.0015  Score=58.25  Aligned_cols=41  Identities=22%  Similarity=0.302  Sum_probs=35.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCC---------------CHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGD---------------NIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr---------------~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|++|+++|++++++|+.               ....+..+.+.+|+.
T Consensus        42 ~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~   97 (176)
T 2fpr_A           42 AFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVQ   97 (176)
T ss_dssp             CBCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             cCCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHHHHHcCCC
Confidence            57899999999999999999999998               456677888888874

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=96.62  E-value=0.001  Score=67.04  Aligned_cols=41  Identities=17%  Similarity=0.297  Sum_probs=38.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|+.|+++|+++.++|+.+...+....+.+|+.
T Consensus       215 ~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~  255 (384)
T 1qyi_A          215 RPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL  255 (384)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG
T ss_pred             CcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCCh
Confidence            57789999999999999999999999999999999999985

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=96.49  E-value=0.0018  Score=55.45  Aligned_cols=40  Identities=15%  Similarity=0.260  Sum_probs=34.0

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCC---HhhHHHHHHHcCcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDN---IQTAISVAKECGII  386 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~---~~~a~~ia~~lgi~  386 (523)
                      ..++++++|++|+++|++++++|||+   ...+...+++.|+.
T Consensus        25 ~~~~~~~al~~l~~~G~~iii~TgR~~~~~~~~~~~l~~~gi~   67 (142)
T 2obb_A           25 EIPFAVETLKLLQQEKHRLILWSVREGELLDEAIEWCRARGLE   67 (142)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHHHHHTTTCC
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCCcccHHHHHHHHHHcCCC
Confidence            45789999999999999999999998   45666777788874

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=96.31  E-value=0.0017  Score=59.81  Aligned_cols=40  Identities=13%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+++++|+++|+++.++|+.+. .+....+.+|+.
T Consensus        95 ~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~~~~~l~~~gl~  134 (220)
T 2zg6_A           95 FLYDDTLEFLEGLKSNGYKLALVSNASP-RVKTLLEKFDLK  134 (220)
T ss_dssp             EECTTHHHHHHHHHTTTCEEEECCSCHH-HHHHHHHHHTCG
T ss_pred             eECcCHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhcCcH
Confidence            5779999999999999999999999876 477888888875

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=96.12  E-value=0.0047  Score=58.51  Aligned_cols=53  Identities=15%  Similarity=0.294  Sum_probs=40.6

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHH----cCccCCCCeEEEee
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE----CGIIDPGETVVDVS  396 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~----lgi~~~~~~~i~~n  396 (523)
                      .+..-+++.++++.+++.|+.++++|||...+...+++.    +|+..+...++..+
T Consensus        19 ~~~~~~~~~~~l~~l~~~g~~~~~~t~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~   75 (264)
T 1yv9_A           19 GKEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRLANEFDIHVPASLVYTAT   75 (264)
T ss_dssp             TTEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHHHHHSCCCCCGGGEEEHH
T ss_pred             CCEECcCHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHhcCCCCChhhEEcHH
Confidence            344347899999999999999999999998877776664    88865445555544

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=95.99  E-value=0.011  Score=56.22  Aligned_cols=39  Identities=8%  Similarity=0.185  Sum_probs=33.9

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      -++.|++.++|+.|+++|+++.++|..+...+..+.+.+
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~  167 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHS  167 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTB
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhh
Confidence            468899999999999999999999999888777776644

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=95.91  E-value=0.015  Score=54.46  Aligned_cols=39  Identities=10%  Similarity=0.169  Sum_probs=33.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.++.|+++|+++.++|++..  +..+.+.+|+.
T Consensus        95 ~~~pg~~~ll~~L~~~g~~i~i~t~~~~--~~~~l~~~gl~  133 (243)
T 4g9b_A           95 AVLPGIRSLLADLRAQQISVGLASVSLN--APTILAALELR  133 (243)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCCTT--HHHHHHHTTCG
T ss_pred             cccccHHHHHHhhhcccccceecccccc--hhhhhhhhhhc
Confidence            5689999999999999999999998754  45667888875

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=95.80  E-value=0.032  Score=51.51  Aligned_cols=41  Identities=12%  Similarity=0.251  Sum_probs=37.2

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -++.|++.++|+.|+++| ++.++|+.+...+....+.+|+.
T Consensus        95 ~~~~~g~~~~l~~l~~~g-~~~i~Tn~~~~~~~~~l~~~gl~  135 (231)
T 2p11_A           95 SRVYPGALNALRHLGARG-PTVILSDGDVVFQPRKIARSGLW  135 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTS-CEEEEEECCSSHHHHHHHHTTHH
T ss_pred             CCcCccHHHHHHHHHhCC-CEEEEeCCCHHHHHHHHHHcCcH
Confidence            467899999999999999 99999999988899999998874

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=95.19  E-value=0.0051  Score=56.57  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=27.8

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHH
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVA  380 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia  380 (523)
                      +.+++.+++++|+++|+++.++||++...+..+.
T Consensus        89 ~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l  122 (211)
T 2b82_A           89 PKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVS  122 (211)
T ss_dssp             ECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHH
T ss_pred             CcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHH
Confidence            4678999999999999999999999865444333

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=95.07  E-value=0.022  Score=59.38  Aligned_cols=37  Identities=16%  Similarity=-0.006  Sum_probs=29.0

Q ss_pred             HHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecc
Q psy78           481 QLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSE  517 (523)
Q Consensus       481 ~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgn  517 (523)
                      .+++.+.-..+++++|||+.||+.+-+.||+....-+
T Consensus       168 ~~~~~lg~~p~~~~~v~D~~~di~~a~~aG~~~~~~~  204 (555)
T 3i28_A          168 FLLDTLKASPSEVVFLDDIGANLKPARDLGMVTILVQ  204 (555)
T ss_dssp             HHHHHHTCCGGGEEEEESCHHHHHHHHHHTCEEEECS
T ss_pred             HHHHHcCCChhHEEEECCcHHHHHHHHHcCCEEEEEC
Confidence            4445554456789999999999999999999876544

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=93.28  E-value=0.31  Score=55.55  Aligned_cols=65  Identities=8%  Similarity=0.184  Sum_probs=45.6

Q ss_pred             chhHHHHHHHHHHhhheee-e-cCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78            41 NYAVFSISMFQYIILAITF-S-QGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP  107 (523)
Q Consensus        41 nt~~Fl~s~~qyi~~~~v~-s-~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  107 (523)
                      .|+.|....+.++..++.. + ....|++++++|+++++++++.+++.+.++..|  +++.+|+..+++
T Consensus       929 ~t~~f~~lv~~q~~~~~~~r~~~~s~~~~~~~~N~~l~~~~~~~~~l~~~~~~~p--~~~~~f~~~~l~  995 (1034)
T 3ixz_A          929 YTVFFISIEMCQIADVLIRKTRRLSAFQQGFFRNRILVIAIVFQVCIGCFLCYCP--GMPNIFNFMPIR  995 (1034)
T ss_pred             HHHHHHHHHHHHHHHHHhhccCCCcccccCCcccHHHHHHHHHHHHHHHHHHHhh--hHHHHhcCCCCC
Confidence            3555555555555444433 3 346899999999999999888888877666554  678889987665

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=93.07  E-value=0.038  Score=52.22  Aligned_cols=55  Identities=18%  Similarity=0.264  Sum_probs=42.6

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHH---cCccCCCCeEEEeecC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKE---CGIIDPGETVVDVSAV  398 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~---lgi~~~~~~~i~~ng~  398 (523)
                      .+..-+++.++|++++++|++++++|||+..+...++++   +|+....+.++..++.
T Consensus        15 ~~~~~~~~~~~l~~l~~~g~~~~~~T~r~~~~~~~~~~~l~~lg~~~~~~~i~~~~~~   72 (263)
T 1zjj_A           15 GNRAIPGVRELIEFLKERGIPFAFLTNNSTKTPEMYREKLLKMGIDVSSSIIITSGLA   72 (263)
T ss_dssp             TTEECTTHHHHHHHHHHHTCCEEEEESCCSSCHHHHHHHHHTTTCCCCGGGEEEHHHH
T ss_pred             CCEeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHCCCCCChhhEEecHHH
Confidence            344448999999999999999999999998887777766   5776544566666654

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=92.61  E-value=0.19  Score=51.09  Aligned_cols=40  Identities=23%  Similarity=0.298  Sum_probs=33.0

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCC------------HhhHHHHHHHcCcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDN------------IQTAISVAKECGII  386 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~------------~~~a~~ia~~lgi~  386 (523)
                      +-|++.++|+.|+++|++++++|+.+            ...+..+.+.+|+.
T Consensus        88 ~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~~~~~~~~~~~~l~~lgl~  139 (416)
T 3zvl_A           88 LYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVP  139 (416)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSCHHHHHHHHHHHHHHHTSC
T ss_pred             hcccHHHHHHHHHHCCCeEEEEeCCccccCCCCCHHHHHHHHHHHHHHcCCC
Confidence            67999999999999999999999966            12266777888873

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=92.50  E-value=0.089  Score=43.73  Aligned_cols=30  Identities=17%  Similarity=0.243  Sum_probs=26.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQT  375 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~  375 (523)
                      .+.+++.+++++++++|++++++|||+...
T Consensus        24 ~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~~   53 (126)
T 1xpj_A           24 LPRLDVIEQLREYHQLGFEIVISTARNMRT   53 (126)
T ss_dssp             CBCHHHHHHHHHHHHTTCEEEEEECTTTTT
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEeCCChhh
Confidence            466899999999999999999999998754

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=91.26  E-value=0.33  Score=55.24  Aligned_cols=69  Identities=13%  Similarity=0.098  Sum_probs=48.7

Q ss_pred             cchhHHHHHHHHHHhhheee-ec-CCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCCCCch
Q psy78            40 ENYAVFSISMFQYIILAITF-SQ-GKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQF  111 (523)
Q Consensus        40 ~nt~~Fl~s~~qyi~~~~v~-s~-G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f  111 (523)
                      ..|+.|....+.++...+.. +. .++|+.+ ++|++|++++++.+++.+.++..|  ++..+|++.+++...|
T Consensus       923 ~~T~~f~~~v~~q~~~~~~~r~~~~~~~~~~-~~n~~l~~~~~~~~~l~~~~~~~p--~~~~~f~~~~l~~~~w  993 (1028)
T 2zxe_A          923 CHTSFFISIVVVQWADLIICKTRRNSIFQQG-MKNKILIFGLFEETALAAFLSYCP--GTDVALRMYPLKPSWW  993 (1028)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSSSCHHHHC-SCCHHHHHHHHHHHHHHHHHHHST--THHHHTCCCCCCGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHccCCcchhccC-CcCHHHHHHHHHHHHHHHHHHHhh--hHHhhhcCCCCCHHHH
Confidence            35777777777666665543 33 2348888 899999988888888877766655  4678899988764333

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=90.18  E-value=0.24  Score=48.55  Aligned_cols=49  Identities=14%  Similarity=0.181  Sum_probs=42.1

Q ss_pred             eeeeeccCCCcchHHHHHHHH-hC----------CCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           339 GLIILENRLKPQTEGVIKELK-DA----------RVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk-~~----------Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      |++.+..++.+++.+++.++. ++          |+.++++|||+...+..+++++|++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~atGr~~~~l~~~~~~~gld~   95 (335)
T 3n28_A           36 SWIVFGHYLTPAQFEDMDFFTNRFNAILDMWKVGRYEVALMDGELTSEHETILKALELDY   95 (335)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHTSCCCEEEEEEETTEEEEEESSCCCHHHHHHHHHHTCEE
T ss_pred             eEEEECCCCCHHHHHHHHHHhcccccchheeecccceEEEecCCchHHHHHHHHHcCCCE
Confidence            345666788999999999988 33          89999999999999999999999964

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=89.96  E-value=0.6  Score=43.80  Aligned_cols=35  Identities=9%  Similarity=0.134  Sum_probs=29.3

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      -++.|++.++|++    |+++.++|..+...+..+.+.+
T Consensus       124 ~~~~pgv~e~L~~----g~~l~i~Tn~~~~~~~~~l~~~  158 (253)
T 2g80_A          124 APVYADAIDFIKR----KKRVFIYSSGSVKAQKLLFGYV  158 (253)
T ss_dssp             BCCCHHHHHHHHH----CSCEEEECSSCHHHHHHHHHSB
T ss_pred             CCCCCCHHHHHHc----CCEEEEEeCCCHHHHHHHHHhh
Confidence            4677899988887    9999999999988887777665

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=87.94  E-value=0.51  Score=44.78  Aligned_cols=46  Identities=17%  Similarity=0.197  Sum_probs=38.7

Q ss_pred             eeeccCCCcchHHHHHHHHhCCCcEEEEcC---CCHhhHHHHHHHcCcc
Q psy78           341 IILENRLKPQTEGVIKELKDARVKVVMITG---DNIQTAISVAKECGII  386 (523)
Q Consensus       341 i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TG---r~~~~a~~ia~~lgi~  386 (523)
                      +.-.+++-+++.++|++++++|++++++||   |+........+++|+.
T Consensus        25 L~~~~~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~~~~~~~~l~~lg~~   73 (284)
T 2hx1_A           25 LKTYNGLLPGIENTFDYLKAQGQDYYIVTNDASRSPEQLADSYHKLGLF   73 (284)
T ss_dssp             TEETTEECTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCT
T ss_pred             cCcCCeeChhHHHHHHHHHHCCCEEEEEeCCCCcCHHHHHHHHHHCCcC
Confidence            333455668999999999999999999995   7888888888999986

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=86.75  E-value=0.1  Score=47.16  Aligned_cols=41  Identities=15%  Similarity=0.147  Sum_probs=37.9

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -.+||++.+.+++|++. ++++++|.-....|..+.+.++..
T Consensus        67 v~~RPgv~efL~~l~~~-~~i~I~Tss~~~~a~~vl~~ld~~  107 (195)
T 2hhl_A           67 VLKRPHVDEFLQRMGQL-FECVLFTASLAKYADPVADLLDRW  107 (195)
T ss_dssp             EEECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHHHHHHCCS
T ss_pred             EEeCcCHHHHHHHHHcC-CeEEEEcCCCHHHHHHHHHHhCCc
Confidence            35799999999999998 999999999999999999999875

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=86.33  E-value=0.13  Score=45.65  Aligned_cols=41  Identities=15%  Similarity=0.164  Sum_probs=37.9

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      -.+||++.+.++++++. +++++.|.-+...|..+.+.++..
T Consensus        54 v~~rPg~~efL~~l~~~-~~i~I~T~~~~~~a~~vl~~ld~~   94 (181)
T 2ght_A           54 VLKRPHVDEFLQRMGEL-FECVLFTASLAKYADPVADLLDKW   94 (181)
T ss_dssp             EEECTTHHHHHHHHHHH-SEEEEECSSCHHHHHHHHHHHCTT
T ss_pred             EEeCCCHHHHHHHHHhC-CCEEEEcCCCHHHHHHHHHHHCCC
Confidence            35799999999999998 999999999999999999999874

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=85.65  E-value=1.2  Score=50.52  Aligned_cols=65  Identities=14%  Similarity=0.109  Sum_probs=44.7

Q ss_pred             chhHHHHHHHHHHhhhee--eecCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCC
Q psy78            41 NYAVFSISMFQYIILAIT--FSQGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPP  107 (523)
Q Consensus        41 nt~~Fl~s~~qyi~~~~v--~s~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p  107 (523)
                      .|..|..-.+.++..++.  -..+++|+.+.++|++|++++++.+++.+.++..  +++..+|++.+++
T Consensus       898 ~t~~f~~lv~~~~~~~~~~r~~~~~~~~~~~~~n~~l~~~~~~~~~l~~~~~~~--p~~~~~f~~~~l~  964 (995)
T 3ar4_A          898 MTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYV--DPLPMIFKLKALD  964 (995)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHS--THHHHHTTCCCCC
T ss_pred             hhHHHHHHHHHHHHHHHHhhccccchhccCCccCHHHHHHHHHHHHHHHHHHHH--HHHHHhhccCCCC
Confidence            355555544444444432  2347899999999999999888877776655554  4678889988766

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=83.56  E-value=0.31  Score=43.32  Aligned_cols=41  Identities=15%  Similarity=0.180  Sum_probs=36.2

Q ss_pred             cCCCcchHHHHHHHHhC-CCcEEEEcCCCHhhHHHHHHHcCc
Q psy78           345 NRLKPQTEGVIKELKDA-RVKVVMITGDNIQTAISVAKECGI  385 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~-Gi~vvi~TGr~~~~a~~ia~~lgi  385 (523)
                      -++.|++.++|++|+++ |+++.++|+.+...+..+.+.+|+
T Consensus        72 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~gl  113 (193)
T 2i7d_A           72 LEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRW  113 (193)
T ss_dssp             CCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHHHHHHH
T ss_pred             CccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHHHHhCc
Confidence            35789999999999999 999999999988888777777776

>1svj_A Potassium-transporting ATPase B chain; alpha-beta sandwich, hydrolase; NMR {Escherichia coli} SCOP: d.220.1.1 PDB: 1u7q_A 2a00_A* 2a29_A*

Probab=82.65  E-value=1.8  Score=37.27  Aligned_cols=40  Identities=20%  Similarity=0.385  Sum_probs=34.1

Q ss_pred             chhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCc
Q psy78           289 VPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKP  349 (523)
Q Consensus       289 ~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~  349 (523)
                      .++.+.+.++.++.+|.+++.+|                     .|..++|++.+.|++||
T Consensus       117 ~~~~~~~~~~~la~~G~T~v~VA---------------------~d~~l~GvIalaD~iK~  156 (156)
T 1svj_A          117 FPTDVDQKVDQVARQGATPLVVV---------------------EGSRVLGVIALKDIVKG  156 (156)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEE---------------------ETTEEEEEEEEEECCCC
T ss_pred             CcHHHHHHHHHHHhCCCCEEEEE---------------------ECCEEEEEEEEecCCCC
Confidence            44567788889999999999988                     35789999999999986

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=80.92  E-value=2.4  Score=36.81  Aligned_cols=26  Identities=19%  Similarity=0.402  Sum_probs=23.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGD  371 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr  371 (523)
                      -++.|++.++|+.|+++ +++.++|+.
T Consensus        68 ~~~~pg~~e~L~~L~~~-~~~~i~T~~   93 (180)
T 3bwv_A           68 LDVMPHAQEVVKQLNEH-YDIYIATAA   93 (180)
T ss_dssp             CCBCTTHHHHHHHHTTT-SEEEEEECC
T ss_pred             CCCCcCHHHHHHHHHhc-CCEEEEeCC
Confidence            35789999999999985 999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	523
d1wpga2	168	c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, ca	2e-15
d1qyia_	380	c.108.1.13 (A:) Hypothetical protein MW1667 (SA154	2e-11
d1wpga3	239	d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryc	3e-06
d1q3ia_	214	d.220.1.1 (A:) Sodium/potassium-transporting ATPas	4e-06
d1wr8a_	230	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	6e-05
d2b8ea1	135	c.108.1.7 (A:416-434,A:548-663) Cation-transportin	2e-04
d2b8ea1	135	c.108.1.7 (A:416-434,A:548-663) Cation-transportin	0.001
d1l6ra_	225	c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPa	3e-04

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 168

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 72.1 bits (176), Expect = 2e-15
 Identities = 42/185 (22%), Positives = 64/185 (34%), Gaps = 51/185 (27%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVV 393
           D          +  + +  G I+  +DA ++V+MITGDN  TAI++ +  GI    E V 
Sbjct: 8   DKTGTLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA 67

Query: 394 DVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELI 453
           D +                                                 TG+ ++ +
Sbjct: 68  DRA------------------------------------------------YTGREFDDL 79

Query: 454 RDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGI 513
                    R       FAR+    K ++V  LQ      AM GDG ND  AL+ A  GI
Sbjct: 80  PLAEQREACRRAC---CFARVEPSHKSKIVEYLQSYDEITAMTGDGVNDAPALKKAEIGI 136

Query: 514 SLSEA 518
           ++   
Sbjct: 137 AMGSG 141

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]} Length = 380

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

 Score = 63.7 bits (154), Expect = 2e-11
 Identities = 24/223 (10%), Positives = 52/223 (23%), Gaps = 55/223 (24%)

Query: 291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLK-- 348
            ++   L    ++ Y+   L S+     + K           +     G I  E  L+  
Sbjct: 167 FSLKGALWTLAQEVYQEWYLGSKLYEDVEKKI---------ARTTFKTGYIYQEIILRPV 217

Query: 349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKV 408
            + + ++ +LK A  ++ + TG      +   +  G++   E                  
Sbjct: 218 DEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLLPYFEADFIA---------TASD 268

Query: 409 YFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKG 468
                 +        K N                                   P   +  
Sbjct: 269 VLEAENMYPQARPLGKPN-----------------------------------PFSYIAA 293

Query: 469 AIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHA 511
                    +      +       V + GD   D  + +   A
Sbjct: 294 LYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGA 336

>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 239

class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Calcium ATPase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 46.0 bits (108), Expect = 3e-06
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 299 EYTEQGYRVIALASRTLSIEDYKHL--NYMKREDIEKDLEFLGLI 341
                  R +ALA+R    +  + +  +  +  + E DL F+G++
Sbjct: 193 GTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVV 237

>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha chain {Pig (Sus scrofa) [TaxId: 9823]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Sodium/potassium-transporting ATPase alpha chain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 45.6 bits (107), Expect = 4e-06
 Identities = 10/65 (15%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 283 EEPMKFVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKH---LNYMKREDIEKDLEFLG 339
               K + +   +   E    G RV+      L    +      +  +     + L F+G
Sbjct: 143 IPLDKEMQDAFQNAYLELGGLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVG 202

Query: 340 LIILE 344
           L+ + 
Sbjct: 203 LMSMI 207

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]} Length = 230

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 42.3 bits (98), Expect = 6e-05
 Identities = 23/186 (12%), Positives = 58/186 (31%), Gaps = 9/186 (4%)

Query: 340 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399
           +      +  +    I+  +   + ++++TG+ +Q A + +   G   P       +   
Sbjct: 13  ITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGAISY 72

Query: 400 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 459
              +                   K+   ++T   +              + E +R+ + E
Sbjct: 73  KKKRIFLASMDEE--WILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINE 130

Query: 460 LIPR-IIVKGAIFARMSSDQKQQLVLELQQLGYY------VAMCGDGANDCGALRAAHAG 512
           L    + V       +      +     +   +       VA  GDG ND  A +     
Sbjct: 131 LNLNLVAVDSGFAIHVKKPWINKGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGYK 190

Query: 513 ISLSEA 518
           +++++A
Sbjct: 191 VAVAQA 196

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 135

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 27/50 (54%)

Query: 334 DLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC 383
           D          + LK   +  ++ELK   +KV MITGDN ++A ++++E 
Sbjct: 9   DKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISREL 58

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 135

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 461 IPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEA 518
           I R +    + A +   QK + V +LQ     VA  GDG ND  AL  A  GI++   
Sbjct: 54  ISRELNLDLVIAEVLPHQKSEEVKKLQA-KEVVAFVGDGINDAPALAQADLGIAVGSG 110

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 225

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 24/188 (12%), Positives = 60/188 (31%), Gaps = 7/188 (3%)

Query: 340 LIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVP 399
           L   +  +  +    I+  +   + V +++G+ I    ++    GI  P     +   + 
Sbjct: 14  LTDRDRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGINGP--VFGENGGIM 71

Query: 400 GGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPE 459
                  K +F+  G +    +  K    ++         +  F +  +  + +R +   
Sbjct: 72  FDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAES 131

Query: 460 LIPRIIVKGAIFARMSSDQKQQLVLELQQLGYY-----VAMCGDGANDCGALRAAHAGIS 514
               I   G  +  M+  + +   +   +  Y      + + GD  ND    +       
Sbjct: 132 RGFVIFYSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEILVIGDSNNDMPMFQLPVRKAC 191

Query: 515 LSEAESPI 522
            + A   I
Sbjct: 192 PANATDNI 199

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	523
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	99.88
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	99.85
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	99.68
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	99.62
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	99.61
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	99.57
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	99.57
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	99.57
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	99.56
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	99.55
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	99.52
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	99.52
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	99.51
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	99.38
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	99.19
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	99.18
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.09
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	99.07
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	99.03
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	98.97
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	98.78
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	98.78
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	98.27
d1q3ia_	214	Sodium/potassium-transporting ATPase alpha chain {	98.11
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	97.81
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	97.67
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	97.53
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	97.4
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	97.32
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	97.16
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	97.08
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	97.01
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	96.96
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	96.95
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	96.78
d1wpga3	239	Calcium ATPase {Rabbit (Oryctolagus cuniculus) [Ta	96.77
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	96.75
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	96.73
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	96.63
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	96.38
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	96.14
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	96.06
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	95.91
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	95.84
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	95.55
d1wpga4	472	Calcium ATPase, transmembrane domain M {Rabbit (Or	95.54
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	95.52
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	95.13
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	94.6
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	94.05
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	94.03
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	93.44
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	92.26
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	91.68
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	90.54
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	88.62

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.88  E-value=4.3e-23  Score=182.96  Aligned_cols=131  Identities=31%  Similarity=0.420  Sum_probs=101.7

Q ss_pred             eeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcch
Q psy78           338 LGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSA  417 (523)
Q Consensus       338 lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~  417 (523)
                      ..++..-||+|++++++|+.||++|++++|+|||+..++..+|+++|+..++..+.                        
T Consensus        12 ~~~~~~~Dp~R~~~~~~I~~l~~~GI~v~miTGD~~~tA~~ia~~~Gi~~~~~~v~------------------------   67 (168)
T d1wpga2          12 TLTTNQLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAIAICRRIGIFGENEEVA------------------------   67 (168)
T ss_dssp             TTBCCCECCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTSSCTTCCCT------------------------
T ss_pred             EEEEEecCCCchhHHHHHHHHHHCcCEEEEECCCCHHHHHHHHHHcCCCCCccccc------------------------
Confidence            33344449999999999999999999999999999999999999999975433210                        


Q ss_pred             hhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEc
Q psy78           418 IQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCG  497 (523)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~G  497 (523)
                                              ...+++++++   ............+..+++|++|++|..+++.+++.++.|+|+|
T Consensus        68 ------------------------~~~~~~~~~~---~~~~~~~~~~~~~~~v~ar~~p~~K~~lv~~l~~~g~~Va~vG  120 (168)
T d1wpga2          68 ------------------------DRAYTGREFD---DLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDEITAMTG  120 (168)
T ss_dssp             ------------------------TTEEEHHHHH---HSCHHHHHHHHHHCCEEESCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ------------------------cccccccccc---hhhHHHHhhhhhhhhhhhccchhHHHHHHHHHHhcccceeEEe
Confidence                                    0011222221   1111222333445579999999999999999999999999999


Q ss_pred             CChhhHHHHHhCCccEEecccC
Q psy78           498 DGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       498 DG~ND~~MLk~A~vGIAMgna~  519 (523)
                      ||.||++||+.||+||||+++.
T Consensus       121 DG~nD~~AL~~AdvGIa~~~gt  142 (168)
T d1wpga2         121 DGVNDAPALKKAEIGIAMGSGT  142 (168)
T ss_dssp             CSGGGHHHHHHSSEEEEETTSC
T ss_pred             cCCCCHHHHHhCCEEEEecccc
Confidence            9999999999999999999754

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.85  E-value=6.8e-22  Score=168.18  Aligned_cols=106  Identities=32%  Similarity=0.344  Sum_probs=96.5

Q ss_pred             hccceeeeeeeeccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEE
Q psy78           332 EKDLEFLGLIILENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFT  411 (523)
Q Consensus       332 e~dl~~lG~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~  411 (523)
                      ..|.+..++++++|++|++++++|+.|++.|++++|+|||+..++..+|++|||+                         
T Consensus         7 ~~d~~~~~~~g~~D~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia~~lgI~-------------------------   61 (135)
T d2b8ea1           7 IFDKTGTLTKGKPDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD-------------------------   61 (135)
T ss_dssp             EEECCCCCBCSCCCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS-------------------------
T ss_pred             EECCceEEEEecCCCCCccHHHHHHHHHHcCCEEEEEcCcchhhhhHHHhhhhhh-------------------------
Confidence            3466677789999999999999999999999999999999999999999999995                         


Q ss_pred             ecCcchhhhhhhhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCC
Q psy78           412 VSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGY  491 (523)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~  491 (523)
                                                                               .++++++|++|...++.+++. +
T Consensus        62 ---------------------------------------------------------~v~~~~~p~~k~~~v~~~q~~-~   83 (135)
T d2b8ea1          62 ---------------------------------------------------------LVIAEVLPHQKSEEVKKLQAK-E   83 (135)
T ss_dssp             ---------------------------------------------------------EEECSCCHHHHHHHHHHHTTT-S
T ss_pred             ---------------------------------------------------------hhccccchhHHHHHHHHHHcC-C
Confidence                                                                     478999999999999998765 5


Q ss_pred             EEEEEcCChhhHHHHHhCCccEEecccCC
Q psy78           492 YVAMCGDGANDCGALRAAHAGISLSEAES  520 (523)
Q Consensus       492 ~V~a~GDG~ND~~MLk~A~vGIAMgna~~  520 (523)
                      .|+|+|||.||++||+.||+||||+++.+
T Consensus        84 ~v~~vGDg~nD~~aL~~Advgia~~~~~~  112 (135)
T d2b8ea1          84 VVAFVGDGINDAPALAQADLGIAVGSGSD  112 (135)
T ss_dssp             CEEEEECSSSSHHHHHHSSEEEEECCC--
T ss_pred             EEEEEeCCCCcHHHHHhCCeeeecCccCH
Confidence            89999999999999999999999998754

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=1.4e-17  Score=159.59  Aligned_cols=178  Identities=14%  Similarity=0.139  Sum_probs=113.2

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhh--
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTK--  421 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~--  421 (523)
                      +.++.++++++|++|+++|++++++|||+...+..+.+++++..+...++..||........................  
T Consensus        19 ~~~i~~~~~~al~~L~~~gi~v~i~TGR~~~~~~~~~~~l~l~~~~~~~i~~nGa~i~~~~~~~~i~~~~~~~~~~~~i~   98 (271)
T d1rkqa_          19 DHTISPAVKNAIAAARARGVNVVLTTGRPYAGVHNYLKELHMEQPGDYCITYNGALVQKAADGSTVAQTALSYDDYRFLE   98 (271)
T ss_dssp             TSCCCHHHHHHHHHHHHTTCEEEEECSSCGGGTHHHHHHTTCCSTTCEEEEGGGTEEEETTTCCEEEECCBCHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhcCcCCCcEEEEcCceeEeccCCCeEEEeecccHHHHHHHH
Confidence            345889999999999999999999999999999999999999988888999999876544333333332111110000  


Q ss_pred             --hhhcc--------------cC-c-----------------hhhhhc-cCCC-ceEEEEe-cccHHHHHhhCcchHhhh
Q psy78           422 --AKKLN--------------YS-K-----------------TEEELG-LSSG-AYKFAVT-GKSWELIRDQMPELIPRI  464 (523)
Q Consensus       422 --~~~~~--------------~~-~-----------------~~~~~~-~~~~-~~~l~i~-~~~~~~l~~~~~~~~~~~  464 (523)
                        .....              .. .                 ...... .... ....... ....+...+.++..+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  178 (271)
T d1rkqa_          99 KLSREVGSHFHALDRTTLYTANRDISYYTVHESFVATIPLVFCEAEKMDPNTQFLKVMMIDEPAILDQAIARIPQEVKEK  178 (271)
T ss_dssp             HHHHHHTCEEEEECSSCEEECCSSCCHHHHHHHHHTTCCEEECCGGGSCTTCCBCEEEEECCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHhhcceEEEEecceEEeccccchhHHHHHHhhccCccccchhhhcCcccceEEEEEecCHHHHHHHHHHHHHHhhcc
Confidence              00000              00 0                 000000 0011 1111222 223334444444433321


Q ss_pred             hc---ccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           465 IV---KGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       465 ~~---~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      ..   ....+.++.|.  +|+.+++.++++    .+++++||||.||++||+.||+||||+||.++
T Consensus       179 ~~~~~~~~~~~~i~p~~~~K~~al~~l~~~~~i~~~~ii~~GD~~ND~~ml~~~~~~~am~na~~~  244 (271)
T d1rkqa_         179 YTVLKSAPYFLEILDKRVNKGTGVKSLADVLGIKPEEIMAIGDQENDIAMIEYAGVGVAVDNAIPS  244 (271)
T ss_dssp             EEEEEEETTEEEEEETTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHH
T ss_pred             eEEEEecCceEEecCCCCCcccccceehhhcccchhcEEEEeCcHhHHHHHHhCCcEEEeCCCCHH
Confidence            11   11124556665  799999999986    46799999999999999999999999999865

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.62  E-value=1.6e-16  Score=153.17  Aligned_cols=174  Identities=16%  Similarity=0.084  Sum_probs=104.5

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKK  424 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (523)
                      .++.+++.++|++|+++|++++++|||+...+..++++++++   .+++..||..+.+.....+.....+......-...
T Consensus        17 ~~i~~~~~~~l~~l~~~Gi~~~i~TGR~~~~~~~~~~~l~~~---~~~i~~nG~~i~~~~~~~i~~~~i~~~~~~~i~~~   93 (285)
T d1nrwa_          17 HQVSLENENALRQAQRDGIEVVVSTGRAHFDVMSIFEPLGIK---TWVISANGAVIHDPEGRLYHHETIDKKRAYDILSW   93 (285)
T ss_dssp             SCCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGTCC---CEEEEGGGTEEECTTCCEEEECCCCHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHhCCC---cEEEecCceeEEecCCceeeeccCCHHHHHHHHHH
Confidence            468899999999999999999999999999999999999985   58899999877654333222221111111100000


Q ss_pred             ccc-----------------------------------C-ch-h-------------------hh--h--ccCCCceEEE
Q psy78           425 LNY-----------------------------------S-KT-E-------------------EE--L--GLSSGAYKFA  444 (523)
Q Consensus       425 ~~~-----------------------------------~-~~-~-------------------~~--~--~~~~~~~~l~  444 (523)
                      +..                                   . .. .                   ..  .  ........+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  173 (285)
T d1nrwa_          94 LESENYYYEVFTGSAIYTPQNGRELLDVELDRFRSANPEADLSVLKQAAEVQYSQSGFAYINSFQELFEADEPIDFYNIL  173 (285)
T ss_dssp             HHHTTCEEEEEESSCEEECCCHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCEEECSCGGGGTSSSSCCCEEEEE
T ss_pred             HHHcCCceEEecCceEEeccccHHHHHHHHHhhhhcCcccchhhhhhhhhhhhccccceeechHHHHhhcccchhheeee
Confidence            000                                   0 00 0                   00  0  0000011122


Q ss_pred             EecccHHHHHhhCc----chHhhhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEE
Q psy78           445 VTGKSWELIRDQMP----ELIPRIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGIS  514 (523)
Q Consensus       445 i~~~~~~~l~~~~~----~~~~~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIA  514 (523)
                      ......+.+.....    ..-...........++.|.  +|+.+++.++++    .++|++||||.||++||+.||+|||
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ldi~~~~~~K~~ai~~l~~~~gi~~~~vi~~GD~~ND~~Ml~~a~~sva  253 (285)
T d1nrwa_         174 GFSFFKEKLEAGWKRYEHAEDLTLVSSAEHNFELSSRKASKGQALKRLAKQLNIPLEETAAVGDSLNDKSMLEAAGKGVA  253 (285)
T ss_dssp             EECSCHHHHHHHHHHHTTCTTEEEECSSTTEEEEEETTCSHHHHHHHHHHHTTCCGGGEEEEESSGGGHHHHHHSSEEEE
T ss_pred             cccchHHHHHHHHHHhhcCCCeEEEEeCCcEEEEecccchhhhHHHHHHhhcccCcccEEEEeCCHHHHHHHHhCCeEEE
Confidence            22222222111100    0000001111224456666  899999999986    4679999999999999999999999


Q ss_pred             ecccCCC
Q psy78           515 LSEAESP  521 (523)
Q Consensus       515 Mgna~~~  521 (523)
                      |+||.++
T Consensus       254 m~na~~~  260 (285)
T d1nrwa_         254 MGNARED  260 (285)
T ss_dssp             CTTCCHH
T ss_pred             eCCCCHH
Confidence            9999865

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.61  E-value=2.5e-16  Score=147.77  Aligned_cols=55  Identities=13%  Similarity=0.086  Sum_probs=47.1

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG  401 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~  401 (523)
                      .+...+.+++||++|+++|++++++|||++..+..+.+++++.   .+++..||+.+.
T Consensus        15 ~~~~~~~~~~ai~~l~~~G~~~~~aTGR~~~~~~~~~~~~~~~---~~~i~~nGa~i~   69 (243)
T d1wzca1          15 PGYEPDPAKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVE---TPFISENGSAIF   69 (243)
T ss_dssp             SSSCSGGGHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTCC---SCEEETTTTEEE
T ss_pred             CCCCCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHhccc---ccccccCCcEEE
Confidence            4566789999999999999999999999999999999999985   356777776543

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=5.7e-16  Score=148.10  Aligned_cols=175  Identities=13%  Similarity=0.101  Sum_probs=104.1

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhh-
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKA-  422 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~-  422 (523)
                      ...+.++++++|++++++| +++++|||++..+..+.++++..  ..++++.||+.+.......+.....+........ 
T Consensus        17 ~~~i~~~~~~al~~l~~~~-~~~i~TGR~~~~~~~~~~~~~~~--~~~~I~~nGa~i~~~~~~~i~~~~i~~~~~~~i~~   93 (267)
T d1nf2a_          17 NLEISEKDRRNIEKLSRKC-YVVFASGRMLVSTLNVEKKYFKR--TFPTIAYNGAIVYLPEEGVILNEKIPPEVAKDIIE   93 (267)
T ss_dssp             TSCCCHHHHHHHHHHTTTS-EEEEECSSCHHHHHHHHHHHSSS--CCCEEEGGGTEEEETTTEEEEECCBCHHHHHHHHH
T ss_pred             cCccCHHHHHHHHHHHcCC-EEEEECCCChHHHHHHHHHhccc--CCceeccCCeEEEecccccccccCCCHHHHHHHHH
Confidence            4468999999999998765 78999999999999999888753  3468888887765543333332222211111100 


Q ss_pred             --hhcccC--------------chh------------------h--hhccCCCceEEEEecccHHHHHhhCcchHhhhh-
Q psy78           423 --KKLNYS--------------KTE------------------E--ELGLSSGAYKFAVTGKSWELIRDQMPELIPRII-  465 (523)
Q Consensus       423 --~~~~~~--------------~~~------------------~--~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~-  465 (523)
                        ......              ...                  .  ..........+..+.+.++.+.+...+.+.... 
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~~~~~~  173 (267)
T d1nf2a_          94 YIKPLNVHWQAYIDDVLYSEKDNEEIKSYARHSNVDYRVEPNLSELVSKMGTTKLLLIDTPERLDELKEILSERFKDVVK  173 (267)
T ss_dssp             HHGGGCCCEEEECSSCEEESSCCHHHHHHHHHTTCCEEECTTHHHHHHHHCBSEEEEECCHHHHHHHHHHHHHHHTTTSE
T ss_pred             HHHhcCceEEEeeCceEEecCCcHHHHHHHHhcCCCceecCcHHHHhhhccceEEEEeccHHHHHHHHHHHHHhhCCcEE
Confidence              000000              000                  0  000011111112222233333332222222111 


Q ss_pred             --cccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           466 --VKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       466 --~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                        .....+.++.|.  +|+.+++.+.++    .++|+|||||.||++||+.||+||||+||.++
T Consensus       174 ~~~~~~~~~di~~~~~~K~~ai~~l~~~~~i~~~~vva~GD~~ND~~ml~~~~~sva~~na~~~  237 (267)
T d1nf2a_         174 VFKSFPTYLEIVPKNVDKGKALRFLRERMNWKKEEIVVFGDNENDLFMFEEAGLRVAMENAIEK  237 (267)
T ss_dssp             EEEEETTEEEEECTTCCHHHHHHHHHHHHTCCGGGEEEEECSHHHHHHHTTCSEEEECTTSCHH
T ss_pred             EEEeecceeeecCCCCchhHHHHHHHHhhccCcccEEEEcCCcchHHHHHhCCcEEEeCCCCHH
Confidence              111224456665  899999999886    46799999999999999999999999999875

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.8e-15  Score=140.59  Aligned_cols=56  Identities=13%  Similarity=0.162  Sum_probs=48.9

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCC
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGG  401 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~  401 (523)
                      ...+.++++++|++|+++|+.++++|||+...+..+.+++++.  ..+++..||+.+.
T Consensus        19 ~~~i~~~~~~al~~l~~~Gi~~~i~TGR~~~~~~~~~~~~~~~--~~~~i~~nGa~i~   74 (232)
T d1xvia_          19 HSYDWQPAAPWLTRLREANVPVILCSSKTSAEMLYLQKTLGLQ--GLPLIAENGAVIQ   74 (232)
T ss_dssp             SCCSCCTTHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHTTCT--TSCEEEGGGTEEE
T ss_pred             cCcCCHHHHHHHHHHHHCCCEEEEEeCCChhhchhHHHHhccC--CceEEccCCeEEE
Confidence            3458899999999999999999999999999999999999985  3568888887653

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=1.6e-16  Score=151.92  Aligned_cols=171  Identities=17%  Similarity=0.176  Sum_probs=99.8

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc-
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL-  425 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  425 (523)
                      ..+.++++|++|+++|++++++|||+...+..+.+++++.   .+++..||+.+.... ..+................+ 
T Consensus        21 ~~~~~~~~l~~l~~~gi~~~i~TGR~~~~~~~~~~~l~~~---~~~i~~nGa~i~~~~-~~~~~~~~~~~~~~~~i~~~~   96 (269)
T d1rlma_          21 NQPRFMAQYQELKKRGIKFVVASGNQYYQLISFFPELKDE---ISFVAENGALVYEHG-KQLFHGELTRHESRIVIGELL   96 (269)
T ss_dssp             CHHHHHHHHHHHHHHTCEEEEECSSCHHHHGGGCTTTTTT---SEEEEGGGTEEEETT-EEEEECCCCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCcc---cceEeeceeEEEECC-cEEEEeccchHHHHHHHHHHH
Confidence            3478999999999999999999999999999988888874   467787877554321 11111111111100000000 


Q ss_pred             -------------------------------ccCc-hhh--hhccCCCceEEEE--ecccHHHHHhhCcchHhh---hhc
Q psy78           426 -------------------------------NYSK-TEE--ELGLSSGAYKFAV--TGKSWELIRDQMPELIPR---IIV  466 (523)
Q Consensus       426 -------------------------------~~~~-~~~--~~~~~~~~~~l~i--~~~~~~~l~~~~~~~~~~---~~~  466 (523)
                                                     .... ...  ........+.+.+  ..+....+.+........   ...
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (269)
T d1rlma_          97 KDKQLNFVACGLQSAYVSENAPEAFVALMAKHYHRLKPVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVALDGIMKPVT  176 (269)
T ss_dssp             TCTTCEEEEEESSCEEEETTSCHHHHHHHHTTCSSEEEESCGGGCCSCEEEEEEECCGGGHHHHHHHHHHHTTTSSEEEE
T ss_pred             hhcCceEEEEecCceEEecCCcHHHHHHHHhhcccccccccHhhhcchheEEEecCCHHHHHHHHHHHHHHhhcceEEEE
Confidence                                           0000 000  0000111122222  222232222221111111   111


Q ss_pred             ccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           467 KGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       467 ~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      ....+.++.|.  +|+.+++.|+++    .++|++||||.||++||+.||+||||+||.++
T Consensus       177 ~~~~~~di~p~~~sK~~al~~l~~~lgi~~~~vi~~GD~~ND~~Ml~~ag~~vam~Na~~~  237 (269)
T d1rlma_         177 SGFGFIDLIIPGLHKANGISRLLKRWDLSPQNVVAIGDSGNDAEMLKMARYSFAMGNAAEN  237 (269)
T ss_dssp             CSTTEEEEECTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHCSEEEECTTCCHH
T ss_pred             EcCceEEEecCchHHHHHHHHHhhhhccccccEEEEcCCcchHHHHHhCCeEEEeCCCCHH
Confidence            11224566665  799999999886    46799999999999999999999999999865

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.56  E-value=1.7e-17  Score=167.02  Aligned_cols=171  Identities=14%  Similarity=0.053  Sum_probs=119.4

Q ss_pred             hHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhhcchhhhhccceeeeeeeeccCCCc--chHHHHHHHHhCCCcEEEE
Q psy78           291 ENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNYMKREDIEKDLEFLGLIILENRLKP--QTEGVIKELKDARVKVVMI  368 (523)
Q Consensus       291 ~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~~~~~~~e~dl~~lG~i~~~d~lr~--~t~~aI~~Lk~~Gi~vvi~  368 (523)
                      +++...+..++++|+|++++|++.+...+.         ....+....|++..+++++|  +++++|++|+++|++++|+
T Consensus       167 ~~~~~~~~~~a~~~~r~l~~~~~~~~~~~~---------~~~~~~~~~g~i~~~~~i~p~~~v~~~l~~lk~aGi~v~i~  237 (380)
T d1qyia_         167 FSLKGALWTLAQEVYQEWYLGSKLYEDVEK---------KIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIA  237 (380)
T ss_dssp             GSTTCHHHHHHHHHHHHHHHHHHHHHHHHC---------SCCSCSSCCCTTTTCCBSSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HHHHhHHHHHHHHHHHHHHHhhhccccccc---------ccchhhHhcccccccccccchhhHHHHHHHHHHCCCeEEEE
Confidence            334566778999999999998876532211         11234455688888888655  9999999999999999999


Q ss_pred             cCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhhhhccCCCceEEEEecc
Q psy78           369 TGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEEELGLSSGAYKFAVTGK  448 (523)
Q Consensus       369 TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~  448 (523)
                      |||+..++..+++++|+...-....                                                  ++++.
T Consensus       238 Tg~~~~~a~~il~~lgl~~~F~~~~--------------------------------------------------i~~~~  267 (380)
T d1qyia_         238 TGRPYTETVVPFENLGLLPYFEADF--------------------------------------------------IATAS  267 (380)
T ss_dssp             CSSCHHHHHHHHHHHTCGGGSCGGG--------------------------------------------------EECHH
T ss_pred             CCCCHHHHHHHHHHcCCcccCCcce--------------------------------------------------EEecc
Confidence            9999999999999999863110000                                                  00111


Q ss_pred             cHHHHHhhC------cchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCC---ccEEecccC
Q psy78           449 SWELIRDQM------PELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGALRAAH---AGISLSEAE  519 (523)
Q Consensus       449 ~~~~l~~~~------~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~---vGIAMgna~  519 (523)
                      +........      .+..+..+.....+++.+|.+|..+++.++..++.++|+|||.||++|++.||   +||+||...
T Consensus       268 d~~~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~vGD~~~D~~aak~Ag~~~Igv~~G~~g  347 (380)
T d1qyia_         268 DVLEAENMYPQARPLGKPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTGLKG  347 (380)
T ss_dssp             HHHHHHHHSTTSCCCCTTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCBTTB
T ss_pred             hhhhhhhhccccccccCCChHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHCCCCEEEEecCCCC
Confidence            000000000      00000111111246788999999999999999999999999999999999999   999999754


Q ss_pred             C
Q psy78           520 S  520 (523)
Q Consensus       520 ~  520 (523)
                      .
T Consensus       348 ~  348 (380)
T d1qyia_         348 K  348 (380)
T ss_dssp             G
T ss_pred             c
Confidence            3

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.55  E-value=1e-15  Score=142.15  Aligned_cols=171  Identities=13%  Similarity=0.115  Sum_probs=97.5

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchh--hhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAI--QTKA  422 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~--~~~~  422 (523)
                      ..+.++++++|++|+++|++++++|||+...+..++..+++.   .+++..||...........  ........  ....
T Consensus        18 ~~i~~~~~~~l~~l~~~gi~v~~~TGR~~~~~~~~~~~~~~~---~~~i~~~g~~~~~~~~~~~--~~~~~~~~~~~~~~   92 (230)
T d1wr8a_          18 RMIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTS---GPVVAEDGGAISYKKKRIF--LASMDEEWILWNEI   92 (230)
T ss_dssp             SCBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCC---SCEEEGGGTEEEETTEEEE--SCCCSHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHhcCCC---cccccccceeeeccccccc--cccccHHHHHHHHH
Confidence            358899999999999999999999999999999999999875   4566666654322111110  00000000  0000


Q ss_pred             h-hcccCchhhhhccCCCceEEEEecccHH---HHHhhCcchHhhhhcccEEEEcCCh--HhHHHHHHHHHHC----CCE
Q psy78           423 K-KLNYSKTEEELGLSSGAYKFAVTGKSWE---LIRDQMPELIPRIIVKGAIFARMSS--DQKQQLVLELQQL----GYY  492 (523)
Q Consensus       423 ~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~---~l~~~~~~~~~~~~~~~~v~~~~~p--~~K~~~i~~L~~~----~~~  492 (523)
                      . ...........................+   .+.+.....+.....  ....++.|  .+|+.+++.++++    .++
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iei~~~~~~K~~al~~l~~~~~i~~~~  170 (230)
T d1wr8a_          93 RKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAVDS--GFAIHVKKPWINKGSGIEKASEFLGIKPKE  170 (230)
T ss_dssp             HHHCTTCCBCTTGGGCSSCEEECTTTSCHHHHHHHHHHTTCSCEEEEC--SSCEEEECTTCCHHHHHHHHHHHHTSCGGG
T ss_pred             HHhcccccceeecccceeeEEEecccccHHHHHHHHHHhccceEEeeC--CcEEEEeeCCcCcchhhcccccccccchhh
Confidence            0 0000000000001111111111122222   222222211111111  11223333  4899999998875    578


Q ss_pred             EEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           493 VAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       493 V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ++++|||.||++||+.||+||||+||.+++
T Consensus       171 ~~~iGD~~NDi~ml~~ag~~vav~na~~~~  200 (230)
T d1wr8a_         171 VAHVGDGENDLDAFKVVGYKVAVAQAPKIL  200 (230)
T ss_dssp             EEEEECSGGGHHHHHHSSEEEECTTSCHHH
T ss_pred             eeeeecCccHHHHHHHCCeEEEECCCCHHH
Confidence            999999999999999999999999997653

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=99.52  E-value=1.2e-15  Score=146.43  Aligned_cols=177  Identities=14%  Similarity=0.048  Sum_probs=103.3

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc---CCCCeEEEeecCCCCCCCCCceEEEecCcchhhhh
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII---DPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTK  421 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~---~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~  421 (523)
                      .++.+.++++|++|+++|++++++|||+...+..+++++++.   ......+..||................+.......
T Consensus        27 ~~i~~~~~~al~~l~~~Gi~v~i~TGR~~~~~~~~~~~l~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~  106 (283)
T d2b30a1          27 IKVPSENIDAIKEAIEKGYMVSICTGRSKVGILSAFGEENLKKMNFYGMPGVYINGTIVYDQIGYTLLDETIETDVYAEL  106 (283)
T ss_dssp             TCSCHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHCHHHHHHHTCCSCSEEEGGGTEEECTTCCEEEECCCCHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCcccccccCCceEEEeeeEEEcCCCcEeeecccCHHHHHHH
Confidence            358999999999999999999999999999999999888753   23455677777665444333322222211111100


Q ss_pred             hhhc---cc-----------------Cc-----------------hhhhhc--cCCCceEEEEecccHHHHHhhCcchHh
Q psy78           422 AKKL---NY-----------------SK-----------------TEEELG--LSSGAYKFAVTGKSWELIRDQMPELIP  462 (523)
Q Consensus       422 ~~~~---~~-----------------~~-----------------~~~~~~--~~~~~~~l~i~~~~~~~l~~~~~~~~~  462 (523)
                      ...+   ..                 ..                 ...+..  .......+..+.+..+.+.+.....+.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (283)
T d2b30a1         107 ISYLVEKNLVNQTIFHRGESNYVTEDNKYADFLQKMYSENRSIIIRHNEMLKYRTMNKLMIVLDPSESKTVIGNLKQKFK  186 (283)
T ss_dssp             HHHHHHTTCGGGEEEEETTEEEEETTCTTTTHHHHHHSCCCCEEECHHHHTTCCCCSEEEECCCTTTHHHHHHHHHHHST
T ss_pred             HHHHHhhcccceEEEEecceeEEeccchHHHHHHHHhhccccccccHHHHhhcccceEEEEecCHHHHHHHHHHHHHHhc
Confidence            0000   00                 00                 000000  001111112222333333332211111


Q ss_pred             h---hhcccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           463 R---IIVKGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       463 ~---~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      .   .......+.++.|.  +|+.+++.+.++    .++|++||||.||++||+.||+||||+||.++
T Consensus       187 ~~~~~~~~~~~~~~i~~~~~~K~~~l~~l~~~~~i~~~~vi~~GD~~ND~~Ml~~a~~~va~~na~~~  254 (283)
T d2b30a1         187 NKLTIFTTYNGHAEVTKLGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNFKYSFAVANATDS  254 (283)
T ss_dssp             TTEEEEECTTSCEEEEETTCCHHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHSCSEEEECTTCCHH
T ss_pred             ccceEEEecceeEeecCCcchhHHHHHHHhhhcccccceEEEecCChhhHHHHHhCCcEEEeCCCCHH
Confidence            1   00011112344444  899999999985    46899999999999999999999999999765

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.52  E-value=2.3e-15  Score=143.25  Aligned_cols=172  Identities=14%  Similarity=0.134  Sum_probs=97.9

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec-Ccchhhhh--
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS-GVSAIQTK--  421 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~-~~~~~~~~--  421 (523)
                      ..++++++++|++|+++|++++++|||+...+..+++..++. ..+++++.||+.+...  .+..+... +.......  
T Consensus        18 ~~i~~~~~~al~~l~~~gi~v~~~TGR~~~~~~~l~~~~~~~-~~~~~I~~nGa~i~~~--~~~i~~~~l~~~~~~~i~~   94 (260)
T d2rbka1          18 HRIPSSTIEALEAAHAKGLKIFIATGRPKAIINNLSELQDRN-LIDGYITMNGAYCFVG--EEVIYKSAIPQEEVKAMAA   94 (260)
T ss_dssp             SSCCHHHHHHHHHHHHTTCEEEEECSSCGGGCCSCHHHHHTT-CCCEEEEGGGTEEEET--TEEEEECCCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHhcC-CCCceEecCCcccccC--cccccccCCCHHHHHHHHH
Confidence            358899999999999999999999999998887766554443 3457889998866543  22222221 11111110  


Q ss_pred             -hhhccc---------------Cchhhh-----------------hccCCCceEEEEe--cccHHHHHhhCcchHhhhhc
Q psy78           422 -AKKLNY---------------SKTEEE-----------------LGLSSGAYKFAVT--GKSWELIRDQMPELIPRIIV  466 (523)
Q Consensus       422 -~~~~~~---------------~~~~~~-----------------~~~~~~~~~l~i~--~~~~~~l~~~~~~~~~~~~~  466 (523)
                       ......               ......                 .............  .+....+....+..  ....
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  172 (260)
T d2rbka1          95 FCEKKGVPCIFVEEHNISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVLPSIPTC--EIGR  172 (260)
T ss_dssp             HHHHHTCCEEEECSSCEEEESCCHHHHHHTTTTTCCCCCCBCCHHHHHTSCCSEEEECCCHHHHHHHGGGSTTC--EEEC
T ss_pred             HHHHcCCcEEEEecCceeeccchHHHHHHHHHhhccCcCcccCHhHhcCcceEEEeecCCHHHHHHHHHHhccc--ccee
Confidence             000000               000000                 0000000111111  11111111111100  0000


Q ss_pred             ccEEEEcCChH--hHHHHHHHHHHC----CCEEEEEcCChhhHHHHHhCCccEEecccCCC
Q psy78           467 KGAIFARMSSD--QKQQLVLELQQL----GYYVAMCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       467 ~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      ....+.++.|.  +|+.+++.|.++    .+++++||||.||++||+.||.||||+||.++
T Consensus       173 ~~~~~~ei~p~~~sK~~al~~l~~~~~i~~~~~~a~GD~~ND~~Ml~~a~~svav~na~~~  233 (260)
T d2rbka1         173 WYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQAKED  233 (260)
T ss_dssp             SSTTCCEEESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTSCHH
T ss_pred             ecCcEEEEEeCCCCHHHHHHHHHHhccccHhheeEecCCcccHHHHHhCCeEEEeCCCCHH
Confidence            01112344554  799999999885    57899999999999999999999999999765

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.51  E-value=4.9e-15  Score=137.68  Aligned_cols=172  Identities=10%  Similarity=0.057  Sum_probs=101.6

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAK  423 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (523)
                      +.++.+++.+++++|+++|++++++|||+...+..+...+|+.   .+++..||.........  ...............
T Consensus        18 ~~~i~~~~~~al~~l~~~g~~v~~~TGr~~~~~~~~~~~~~~~---~~~i~~~G~~~~~~~~~--~~~~~~~~~~~~~~~   92 (225)
T d1l6ra_          18 DRLISTKAIESIRSAEKKGLTVSLLSGNVIPVVYALKIFLGIN---GPVFGENGGIMFDNDGS--IKKFFSNEGTNKFLE   92 (225)
T ss_dssp             TSCBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCC---SCEEEGGGTEEECTTSC--EEESSCSHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHHHCCCEEEEEcCCchhhhHHHHHHcCCC---ceEEeecceEEEeCCcc--EEEecChHHHHHHHH
Confidence            4568899999999999999999999999999999999999874   46777777554332221  111111111111111


Q ss_pred             hcccC---chhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChH--hHHHHHHHHHHC----CCEEE
Q psy78           424 KLNYS---KTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSD--QKQQLVLELQQL----GYYVA  494 (523)
Q Consensus       424 ~~~~~---~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~--~K~~~i~~L~~~----~~~V~  494 (523)
                      .....   ..............+....+..+.+............ ......++.|.  +|+.+++.++++    .++|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~i~~~~~~K~~ai~~l~~~~~i~~~~v~  171 (225)
T d1l6ra_          93 EMSKRTSMRSILTNRWREASTGFDIDPEDVDYVRKEAESRGFVIF-YSGYSWHLMNRGEDKAFAVNKLKEMYSLEYDEIL  171 (225)
T ss_dssp             HHTTTSSCBCCGGGGGCSSSEEEBCCGGGHHHHHHHHHTTTEEEE-EETTEEEEEETTCSHHHHHHHHHHHTTCCGGGEE
T ss_pred             HHHHhcCcceeecccceeeeeccccCHHHHHHHHHHHhhcCcEEE-ECCcEEEecCCccchHHHHHHHhhhhccchhhee
Confidence            11000   0000001111122222333444333321111000000 00112334443  899999999875    46799


Q ss_pred             EEcCChhhHHHHHhCCccEEecccCCC
Q psy78           495 MCGDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       495 a~GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      +||||.||++|++.||+||||+||.++
T Consensus       172 ~~GDs~nD~~m~~~a~~~vav~na~~~  198 (225)
T d1l6ra_         172 VIGDSNNDMPMFQLPVRKACPANATDN  198 (225)
T ss_dssp             EECCSGGGHHHHTSSSEEEECTTSCHH
T ss_pred             eecCCcchHHHHHHCCeEEEECCCcHH
Confidence            999999999999999999999999764

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.38  E-value=4.1e-14  Score=132.91  Aligned_cols=173  Identities=15%  Similarity=0.168  Sum_probs=93.6

Q ss_pred             cchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEec---Cc-chhh-hhhh
Q psy78           349 PQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVS---GV-SAIQ-TKAK  423 (523)
Q Consensus       349 ~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~---~~-~~~~-~~~~  423 (523)
                      ++..+++.+++++|+.++++|||+...+..+.+++++..+ +.+++.||............+...   .. .... ....
T Consensus        21 ~~~~~~~~~~~~~g~~v~i~TGR~~~~~~~~~~~~~~~~~-~~~i~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (244)
T d1s2oa1          21 LEHLQEYLGDRRGNFYLAYATGRSYHSARELQKQVGLMEP-DYWLTAVGSEIYHPEGLDQHWADYLSEHWQRDILQAIAD   99 (244)
T ss_dssp             HHHHHHHHHTTGGGEEEEEECSSCHHHHHHHHHHHTCCCC-SEEEETTTTEEEETTEECHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHcCCCCC-ceEEeccceEEEEccCcchHHHHHHHHHHhHHHHHHHHh
Confidence            3556777888999999999999999999999999998653 457777776543221110000000   00 0000 0000


Q ss_pred             hcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhc------ccEEEEcCChH--hHHHHHHHHHHC----CC
Q psy78           424 KLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIV------KGAIFARMSSD--QKQQLVLELQQL----GY  491 (523)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~------~~~v~~~~~p~--~K~~~i~~L~~~----~~  491 (523)
                      ...............................+...........      ......++.|.  +|+.+++.+.+.    .+
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~K~~a~~~l~~~~gi~~~  179 (244)
T d1s2oa1         100 GFEALKPQSPLEQNPWKISYHLDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLLPQRSNKGNATQYLQQHLAMEPS  179 (244)
T ss_dssp             TCTTEEECCGGGCBTTBEEEEECTTSCTHHHHHHHHHHHTSSCCEEEEEETTTEEEEEETTCSHHHHHHHHHHHTTCCGG
T ss_pred             hcccccccChhhhcceEEEEeccccccHHHHHHHHHHHHhhcccceeeecCCcEEEEEeCccchhHHHHHHHHhccCChh
Confidence            0000000000001111122222211111111111111111000      00012334443  799999999986    36


Q ss_pred             EEEEEcCChhhHHHHHhCCccEEecccCCCC
Q psy78           492 YVAMCGDGANDCGALRAAHAGISLSEAESPI  522 (523)
Q Consensus       492 ~V~a~GDG~ND~~MLk~A~vGIAMgna~~~v  522 (523)
                      ++++||||.||++||+.||.||||+||.+++
T Consensus       180 ~~v~~GD~~ND~~Ml~~~~~~vav~na~~~l  210 (244)
T d1s2oa1         180 QTLVCGDSGNDIGLFETSARGVIVRNAQPEL  210 (244)
T ss_dssp             GEEEEECSGGGHHHHTSSSEEEECTTCCHHH
T ss_pred             hEEEEcCCCCCHHHHhhCCcEEEeCCCCHHH
Confidence            7999999999999999999999999998653

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.7e-13  Score=124.39  Aligned_cols=51  Identities=18%  Similarity=0.185  Sum_probs=43.3

Q ss_pred             EEcCChH--hHHHHHHHHHHC-CCEEEEEcC----ChhhHHHHHhCC-ccEEecccCCC
Q psy78           471 FARMSSD--QKQQLVLELQQL-GYYVAMCGD----GANDCGALRAAH-AGISLSEAESP  521 (523)
Q Consensus       471 ~~~~~p~--~K~~~i~~L~~~-~~~V~a~GD----G~ND~~MLk~A~-vGIAMgna~~~  521 (523)
                      +.++.|.  +|+.+++.|++. .++|++|||    |.||++||++|| .|+||+||.++
T Consensus       176 ~lei~~~~vsKg~al~~L~~~~~~ev~afGD~~~~G~ND~eml~~a~~~~~av~na~~~  234 (244)
T d2fuea1         176 SFDVFPEGWDKRYCLDSLDQDSFDTIHFFGNETSPGGNDFEIFADPRTVGHSVVSPQDT  234 (244)
T ss_dssp             CEEEEETTCSTTHHHHHHTTSCCSEEEEEESCCSTTSTTHHHHHSTTSEEEECSSHHHH
T ss_pred             cceecchhccHHHHHHHHhcCChhhEEEEcCCCCCCCCcHHHHHcCCCcEEEcCCHHHH
Confidence            3455554  899999999986 678999999    569999999998 69999999764

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.18  E-value=2.9e-12  Score=118.06  Aligned_cols=48  Identities=17%  Similarity=0.243  Sum_probs=39.6

Q ss_pred             EEcCChH--hHHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCccEEecccC
Q psy78           471 FARMSSD--QKQQLVLELQQLGYYVAMCGDGANDCGALRAAHAGISLSEAE  519 (523)
Q Consensus       471 ~~~~~p~--~K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~vGIAMgna~  519 (523)
                      +.++.|.  +|+.+++.|.++ ..+++|||+.||++||+.|+.|+||+++.
T Consensus       150 ~idi~p~g~~Kg~al~~l~~~-~~~i~~GDs~ND~~Mf~~~~~~~av~~g~  199 (229)
T d1u02a_         150 IIELRVPGVNKGSAIRSVRGE-RPAIIAGDDATDEAAFEANDDALTIKVGE  199 (229)
T ss_dssp             EEEEECTTCCHHHHHHHHHTT-SCEEEEESSHHHHHHHHTTTTSEEEEESS
T ss_pred             EEEEecCCCCHHHHHHHHhcc-ccceeecCCCChHHHHhccCCeEEEEeCC
Confidence            4566665  899999999976 57899999999999999997776665554

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=5.6e-11  Score=109.20  Aligned_cols=108  Identities=25%  Similarity=0.275  Sum_probs=79.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      +++|+++++|+.||++|++++|+||.....+.++++.+|++..  .++ .|......                       
T Consensus        82 ~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~~~lgi~~~--~v~-an~~~~~~-----------------------  135 (217)
T d1nnla_          82 HLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPAT--NVF-ANRLKFYF-----------------------  135 (217)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGG--GEE-EECEEECT-----------------------
T ss_pred             ccCHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCccc--cee-eeeeeeee-----------------------
Confidence            4689999999999999999999999999999999999999631  111 11100000                       


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEc----CChHhHHHHHHHHHHC--CCEEEEEcCC
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFAR----MSSDQKQQLVLELQQL--GYYVAMCGDG  499 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~----~~p~~K~~~i~~L~~~--~~~V~a~GDG  499 (523)
                                          +|.                   ......    ..+..|..+++.+++.  .++++++|||
T Consensus       136 --------------------~G~-------------------~~g~~~~~p~~~~~~K~~~v~~~~~~~~~~~~~~vGDs  176 (217)
T d1nnla_         136 --------------------NGE-------------------YAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDG  176 (217)
T ss_dssp             --------------------TSC-------------------EEEECTTSGGGSTTHHHHHHHHHHHHHCCSCEEEEESS
T ss_pred             --------------------hhc-------------------cccceeeeeeeccchHHHHHHHHHhccCccccEEEEeC
Confidence                                000                   000111    2345799999998764  5679999999


Q ss_pred             hhhHHHHHhCCccEEeccc
Q psy78           500 ANDCGALRAAHAGISLSEA  518 (523)
Q Consensus       500 ~ND~~MLk~A~vGIAMgna  518 (523)
                      .||++|++.||+|||+++.
T Consensus       177 ~~Di~~~~~ag~~va~~~~  195 (217)
T d1nnla_         177 ATDMEACPPADAFIGFGGN  195 (217)
T ss_dssp             HHHHTTTTTSSEEEEECSS
T ss_pred             HhhHHHHHhCCceEEECCC
Confidence            9999999999999999854

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=99.07  E-value=4.2e-11  Score=105.90  Aligned_cols=85  Identities=22%  Similarity=0.250  Sum_probs=70.9

Q ss_pred             HHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhcccCchhh
Q psy78           353 GVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKLNYSKTEE  432 (523)
Q Consensus       353 ~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (523)
                      .+|+.|++.|+.+.++|||....+...++++++.                                              
T Consensus        39 ~gi~~l~~~gi~~~iis~~~~~~v~~~~~~l~~~----------------------------------------------   72 (177)
T d1k1ea_          39 LGIKMLMDADIQVAVLSGRDSPILRRRIADLGIK----------------------------------------------   72 (177)
T ss_dssp             HHHHHHHHTTCEEEEEESCCCHHHHHHHHHHTCC----------------------------------------------
T ss_pred             HHHHHHhhhcEEEEEecCCchhHHHHHHhhhccc----------------------------------------------
Confidence            4899999999999999999999999999999874                                              


Q ss_pred             hhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHC----CCEEEEEcCChhhHHHHHh
Q psy78           433 ELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQL----GYYVAMCGDGANDCGALRA  508 (523)
Q Consensus       433 ~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~----~~~V~a~GDG~ND~~MLk~  508 (523)
                                                          ..+..  ..+|...++.+.++    .++|+++||+.||++||+.
T Consensus        73 ------------------------------------~~~~~--~~~K~~~l~~~~~~~~i~~~~v~~vGDd~nDl~~l~~  114 (177)
T d1k1ea_          73 ------------------------------------LFFLG--KLEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAA  114 (177)
T ss_dssp             ------------------------------------EEEES--CSCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHH
T ss_pred             ------------------------------------ccccc--cccHHHHHHHHHHHhcCCcceeEEecCCccHHHHHhh
Confidence                                                12222  24566777766654    5889999999999999999


Q ss_pred             CCccEEecccCCC
Q psy78           509 AHAGISLSEAESP  521 (523)
Q Consensus       509 A~vGIAMgna~~~  521 (523)
                      ||+|+||+||.++
T Consensus       115 ~g~siap~nA~~~  127 (177)
T d1k1ea_         115 CGTSFAVADAPIY  127 (177)
T ss_dssp             SSEEEECTTSCHH
T ss_pred             CCeEEEcCCccHH
Confidence            9999999999764

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.03  E-value=2.6e-10  Score=102.80  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=73.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      +..+.....++.+ +.+.+.++.||............++++......+.....                           
T Consensus        69 ~~~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------------------  120 (206)
T d1rkua_          69 KPLEGAVEFVDWL-RERFQVVILSDTFYEFSQPLMRQLGFPTLLCHKLEIDDS---------------------------  120 (206)
T ss_dssp             CCCTTHHHHHHHH-HTTSEEEEEEEEEHHHHHHHHHHTTCCCEEEEEEEECTT---------------------------
T ss_pred             cccchHHHHHHHh-hcCceEEEeccCchHHHHHHHHHhCCchhhcceeeeecc---------------------------
Confidence            4556667777665 578999999999999999999988875311111100000                           


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGA  505 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~M  505 (523)
                                                              ..........+..+...++.++...++|+|||||.||++|
T Consensus       121 ----------------------------------------~~~~~~~~~~~~~~~~~~~~~~i~~~eviaiGDg~NDi~M  160 (206)
T d1rkua_         121 ----------------------------------------DRVVGYQLRQKDPKRQSVIAFKSLYYRVIAAGDSYNDTTM  160 (206)
T ss_dssp             ----------------------------------------SCEEEEECCSSSHHHHHHHHHHHTTCEEEEEECSSTTHHH
T ss_pred             ----------------------------------------cccccccccchhhHHHHHHHhcccccceEEecCCccCHHH
Confidence                                                    0001223334445666777777789999999999999999


Q ss_pred             HHhCCccEEecccCCC
Q psy78           506 LRAAHAGISLSEAESP  521 (523)
Q Consensus       506 Lk~A~vGIAMgna~~~  521 (523)
                      |+.||+|||| |+.++
T Consensus       161 l~~Ag~gIAm-na~~~  175 (206)
T d1rkua_         161 LSEAHAGILF-HAPEN  175 (206)
T ss_dssp             HHHSSEEEEE-SCCHH
T ss_pred             HHhCCccEEE-CCCHH
Confidence            9999999999 66543

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=4.7e-12  Score=117.56  Aligned_cols=49  Identities=20%  Similarity=0.245  Sum_probs=39.4

Q ss_pred             EEcCChH--hHHHHHHHHHHC-CCEEEEEcC----ChhhHHHHHhCC-ccEEecccC
Q psy78           471 FARMSSD--QKQQLVLELQQL-GYYVAMCGD----GANDCGALRAAH-AGISLSEAE  519 (523)
Q Consensus       471 ~~~~~p~--~K~~~i~~L~~~-~~~V~a~GD----G~ND~~MLk~A~-vGIAMgna~  519 (523)
                      +.++.|.  +|+.+++.|.+. .++|++|||    |.||++||++|| .|++|+|++
T Consensus       176 ~lei~~~~vsKg~al~~l~~~~~~ev~afGD~~~~g~NDi~Ml~~~g~~~~~v~~~~  232 (243)
T d2amya1         176 SFDVFPDGWDKRYCLRHVENDGYKTIYFFGDKTMPGGNDHEIFTDPRTMGYSVTAPE  232 (243)
T ss_dssp             EEEEEETTCSGGGGGGGTTTSCCSEEEEEECSCC---CCCHHHHCTTEEEEECSSHH
T ss_pred             cceeeccccCHHHHHHHHhCCCcceEEEEcCCCCCCCCcHHHHHccCCcEEEeCCHH
Confidence            4455555  899999999876 689999999    889999999998 688888764

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.78  E-value=1.6e-09  Score=97.68  Aligned_cols=111  Identities=19%  Similarity=0.184  Sum_probs=75.9

Q ss_pred             eccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhh
Q psy78           343 LENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKA  422 (523)
Q Consensus       343 ~~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~  422 (523)
                      ...++.+++.+.++.++..|..++++||.....+....++.+....-...+....                         
T Consensus        72 ~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------  126 (210)
T d1j97a_          72 KRITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLDYAFANRLIVKD-------------------------  126 (210)
T ss_dssp             HTCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCSEEEEEEEEEET-------------------------
T ss_pred             hhhhhhhhHHHHHHHHHHcCCEEEeecccccccccchhhccchhhhhhhhhcccc-------------------------
Confidence            3456788999999999999999999999999999888888876421000000000                         


Q ss_pred             hhcccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEc--CChHhHHHHHHHHHHC----CCEEEEE
Q psy78           423 KKLNYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFAR--MSSDQKQQLVLELQQL----GYYVAMC  496 (523)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~--~~p~~K~~~i~~L~~~----~~~V~a~  496 (523)
                                      ..                          .......  ..+..|...+..+.+.    .++++||
T Consensus       127 ----------------~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i  164 (210)
T d1j97a_         127 ----------------GK--------------------------LTGDVEGEVLKENAKGEILEKIAKIEGINLEDTVAV  164 (210)
T ss_dssp             ----------------TE--------------------------EEEEEECSSCSTTHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred             ----------------cc--------------------------ccccccccccccccccchhhhHHHHhcccccceEEe
Confidence                            00                          0001111  1223455555555543    6789999


Q ss_pred             cCChhhHHHHHhCCccEEecccCCC
Q psy78           497 GDGANDCGALRAAHAGISLSEAESP  521 (523)
Q Consensus       497 GDG~ND~~MLk~A~vGIAMgna~~~  521 (523)
                      |||.||++|++.||+|||| ||.+.
T Consensus       165 GDs~nDi~m~~~ag~~va~-na~~~  188 (210)
T d1j97a_         165 GDGANDISMFKKAGLKIAF-CAKPI  188 (210)
T ss_dssp             ESSGGGHHHHHHCSEEEEE-SCCHH
T ss_pred             cCCcChHHHHHHCCCCEEE-CCCHH
Confidence            9999999999999999999 87654

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=98.78  E-value=2.6e-09  Score=97.95  Aligned_cols=115  Identities=11%  Similarity=0.100  Sum_probs=81.9

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCCCeEEEeecCCCCCCCCCceEEEecCcchhhhhhhhc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPGETVVDVSAVPGGLKECPKVYFTVSGVSAIQTKAKKL  425 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~~~~i~~ng~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (523)
                      ++.|++.+.++.|+++|++++++||.+...+..+++++|+..   ++.+ |.......   ....               
T Consensus        75 ~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l~~l~~~~---~~~a-n~~~~~~~---~~~~---------------  132 (226)
T d2feaa1          75 KIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKD---RIYC-NHASFDND---YIHI---------------  132 (226)
T ss_dssp             CBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCGG---GEEE-EEEECSSS---BCEE---------------
T ss_pred             chhHHHHHHHHHHHhcccccccCCcchhhhHHHHHHHcCCcc---ceee-eeEEEeCC---ccee---------------
Confidence            478999999999999999999999999999999999988742   2211 11100000   0000               


Q ss_pred             ccCchhhhhccCCCceEEEEecccHHHHHhhCcchHhhhhcccEEEEcCChHhHHHHHHHHHHCCCEEEEEcCChhhHHH
Q psy78           426 NYSKTEEELGLSSGAYKFAVTGKSWELIRDQMPELIPRIIVKGAIFARMSSDQKQQLVLELQQLGYYVAMCGDGANDCGA  505 (523)
Q Consensus       426 ~~~~~~~~~~~~~~~~~l~i~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~p~~K~~~i~~L~~~~~~V~a~GDG~ND~~M  505 (523)
                                          ..          +    .  ..........|..|..+++.++..+++++++||+.||++|
T Consensus       133 --------------------~~----------~----~--~~~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~Dl~~  176 (226)
T d2feaa1         133 --------------------DW----------P----H--SCKGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEA  176 (226)
T ss_dssp             --------------------EC----------T----T--CCCTTCCSCCSSCHHHHHHHHCCTTCEEEEEECCGGGHHH
T ss_pred             --------------------cc----------c----c--ccccccccCCHHHHHHHHHHhcCCCceEEEEeCchhhHHH
Confidence                                00          0    0  0000122345677889999988889999999999999999


Q ss_pred             HHhCCccEEeccc
Q psy78           506 LRAAHAGISLSEA  518 (523)
Q Consensus       506 Lk~A~vGIAMgna  518 (523)
                      ++.||+++|+++.
T Consensus       177 a~~A~~~~a~~~~  189 (226)
T d2feaa1         177 AKLSDLCFARDYL  189 (226)
T ss_dssp             HHTCSEEEECHHH
T ss_pred             HHHCCEEEEecch
Confidence            9999999999864

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.27  E-value=5.5e-08  Score=99.31  Aligned_cols=65  Identities=17%  Similarity=0.127  Sum_probs=61.9

Q ss_pred             cCCchHHHHHHHHhheeeccCCCChhHHHHHHHHHHHHHhhcccccccccceeeeeeehhhhhhhccccceeeecCCccc
Q psy78           182 RGRSLWDIVIKSLDIITIVIPPALPATMTVGKLYALTRLKKYNISCINSRVINLMTVGKLYALTRLKKYNISCINSRVIN  261 (523)
Q Consensus       182 ~~~~~~~~~~~~~~vlv~~~P~aLp~~~~~~~~~~~~~l~k~~~~~~~~~t~~~m~v~~~~~~~~~~~~~il~~~~~~~~  261 (523)
                      ...++.+.+..+++++|+++|+|||+++|+++++|++||+|+                           ++++|+..++|
T Consensus       173 ~~~~~~~~~~~ai~l~V~~iPEgLp~~vti~La~~~~rmak~---------------------------~~lVr~L~avE  225 (472)
T d1wpga4         173 WIRGAIYYFKIAVALAVAAIPEGLPAVITTCLALGTRRMAKK---------------------------NAIVRSLPSVE  225 (472)
T ss_dssp             SSSCGGGHHHHHHHHHHHHSCTTHHHHHHHHHHHHHHHHHTT---------------------------TEEESCTTHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHhc---------------------------cchhhhHHHHH
Confidence            345678899999999999999999999999999999999999                           99999999999


Q ss_pred             cCCceeEEeecc
Q psy78           262 VSGSINCVCFDK  273 (523)
Q Consensus       262 ~~~~v~~v~fDK  273 (523)
                      .+|+..+.|.||
T Consensus       226 ~~g~~~~~~~~k  237 (472)
T d1wpga4         226 TLGRAIYNNMKQ  237 (472)
T ss_dssp             HHTHHHHHHHHH
T ss_pred             HHHHHHHHHhHH
Confidence            999999999999

>d1q3ia_ d.220.1.1 (A:) Sodium/potassium-transporting ATPase alpha chain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Sodium/potassium-transporting ATPase alpha chain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.11  E-value=1.1e-06  Score=79.48  Aligned_cols=63  Identities=14%  Similarity=0.143  Sum_probs=49.2

Q ss_pred             cchhHHHHHHHHHhhccCeEEEEEEecCCchhHHHhhh---cchhhhhccceeeeeeeeccCCCcc
Q psy78           288 FVPENIVSVLSEYTEQGYRVIALASRTLSIEDYKHLNY---MKREDIEKDLEFLGLIILENRLKPQ  350 (523)
Q Consensus       288 ~~~~~~~~~~~~~~~~G~r~l~~a~k~l~~~~~~~~~~---~~~~~~e~dl~~lG~i~~~d~lr~~  350 (523)
                      ..++.+.+.+++|+++|+|||++|||+++.+.......   ...+..++||+|+|+++++||+|+.
T Consensus       148 ~~~~~i~~~~~~~a~~GlRvLa~A~k~l~~~~~~~~~~~~~~~~~~~e~~L~flGlvgi~DPPR~~  213 (214)
T d1q3ia_         148 EMQDAFQNAYLELGGLGERVLGFCQLNLPSGKFPRGFKFDTDELNFPTEKLCFVGLMSMIDHHHHH  213 (214)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEEEEEECTTTSCTTCCCCTTTTSSCCSSEEEEEEEEEESCCSCC
T ss_pred             HHHHHHHHHHHHHhhCCcEEEEEEEEecCccccccccccChhhhhhhcCCCEEEEEEEEEeCCCCC
Confidence            45677889999999999999999999997653222111   2334668999999999999999974

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=7.8e-06  Score=76.92  Aligned_cols=44  Identities=16%  Similarity=0.237  Sum_probs=40.7

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccCCC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIIDPG  389 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~~~  389 (523)
                      ++|+++++.++.|+++|+.+.++||--...+.++++++|++.++
T Consensus       135 ~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl~~lg~~~~n  178 (291)
T d2bdua1         135 MLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSN  178 (291)
T ss_dssp             CBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHHHTTCCBTT
T ss_pred             CcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHcCCCccC
Confidence            48999999999999999999999999999999999999987543

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=0.00012  Score=65.35  Aligned_cols=42  Identities=14%  Similarity=0.146  Sum_probs=38.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++.|++.++|+.|+++|+++.++||.+...+..+.+.+|++.
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~~l~~  129 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLRD  129 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG
T ss_pred             cccchHHHHHHHhhhccccccccccccccccccccccccccc
Confidence            456999999999999999999999999999999999999963

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=97.53  E-value=0.00013  Score=65.04  Aligned_cols=42  Identities=19%  Similarity=0.307  Sum_probs=39.0

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++.|++.++++.|++.|+++.++||.+...+..+.+++|+..
T Consensus        95 ~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l~~~gl~~  136 (224)
T d2hsza1          95 RLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGIDH  136 (224)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCGG
T ss_pred             chHHHHHHHHHHHhccCCcccccccccHHHHHHHHHhcCchh
Confidence            467999999999999999999999999999999999999863

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.40  E-value=0.00012  Score=65.97  Aligned_cols=42  Identities=19%  Similarity=0.164  Sum_probs=37.6

Q ss_pred             CCCcchHHHHHHHHhCC-CcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDAR-VKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~G-i~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ++-|++.++|++|+++| +++.++||.+...+....+.+|+..
T Consensus        91 ~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l~~~gl~~  133 (228)
T d2hcfa1          91 TLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDH  133 (228)
T ss_dssp             EECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCST
T ss_pred             eecCchHHHHhhhhccccccccccCCCcchhhhhhhhhhcccc
Confidence            34689999999999987 8999999999999999999999863

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.32  E-value=8.8e-05  Score=65.50  Aligned_cols=40  Identities=18%  Similarity=0.284  Sum_probs=34.6

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|+++++++.|+++|+++.++|+.+. .+..+.+.+|++
T Consensus        82 ~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~~~~~l~~~gl~  121 (204)
T d2go7a1          82 VLMPGAREVLAWADESGIQQFIYTHKGN-NAFTILKDLGVE  121 (204)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHHTCG
T ss_pred             cccchHHhhhhcccccccchhhhcccch-hhhhhhhhcccc
Confidence            4579999999999999999999999765 456788889986

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.16  E-value=0.00018  Score=60.13  Aligned_cols=31  Identities=13%  Similarity=0.219  Sum_probs=28.0

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHh
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQ  374 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~  374 (523)
                      ++++-|++.+.++.|+++|++++++|||+..
T Consensus        34 ~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~~   64 (149)
T d1ltqa1          34 TDVINPMVVELSKMYALMGYQIVVVSGRESG   64 (149)
T ss_dssp             GCCBCHHHHHHHHHHHHTTCEEEEEECSCCC
T ss_pred             cCccCHHHHHHHHHHHhccCeEEEEecCcHH
Confidence            4678899999999999999999999999854

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.08  E-value=0.00054  Score=60.34  Aligned_cols=42  Identities=26%  Similarity=0.315  Sum_probs=36.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      .++.+++.++++.++++| ++.++|+.+...+..+.+.+|++.
T Consensus        83 ~~~~~~~~~~l~~l~~~~-~~~i~t~~~~~~~~~~l~~~gl~~  124 (210)
T d2ah5a1          83 AQLFPQIIDLLEELSSSY-PLYITTTKDTSTAQDMAKNLEIHH  124 (210)
T ss_dssp             CEECTTHHHHHHHHHTTS-CEEEEEEEEHHHHHHHHHHTTCGG
T ss_pred             ccchhHHHHHHhhhhccc-chhhcccccchhhhHHHHhhcccc
Confidence            356799999999999875 888999999999999999999863

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00073  Score=57.41  Aligned_cols=41  Identities=20%  Similarity=0.182  Sum_probs=33.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCH-hhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNI-QTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~-~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|++|+++|+++.++|+.+. ..+....+.+++.
T Consensus        46 ~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~~~~l~~~~~~   87 (164)
T d1u7pa_          46 QLYPEVPEVLGRLQSLGVPVAAASRTSEIQGANQLLELFDLG   87 (164)
T ss_dssp             CCCTTHHHHHHHHHHTTCCEEEEECCSCHHHHHHHHHHTTCG
T ss_pred             ccchHHHHHHHHHHHCCCcEEEEeccccchhhccchhccccc
Confidence            5789999999999999999999997654 4455666666653

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=96.96  E-value=0.00068  Score=61.85  Aligned_cols=41  Identities=24%  Similarity=0.219  Sum_probs=38.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++++.|+++|+++.++||.+...+..+.+.+|+.
T Consensus        99 ~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~~~~l~  139 (257)
T d1swva_          99 SPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ  139 (257)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHT
T ss_pred             ccCCcHHHHHHHHHhcccceeecCCCchhhHHHHHHHHhhc
Confidence            57899999999999999999999999999999999999885

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.95  E-value=0.00033  Score=64.15  Aligned_cols=39  Identities=13%  Similarity=0.315  Sum_probs=31.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHc
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKEC  383 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~l  383 (523)
                      +..-+++.++|++|+++|++++++|+++..+...+++++
T Consensus        17 ~~~i~~a~~~i~~l~~~g~~~~~~Tn~s~~~~~~~~~~L   55 (253)
T d1yv9a1          17 KEPIPAGKRFVERLQEKDLPFLFVTNNTTKSPETVAQRL   55 (253)
T ss_dssp             TEECHHHHHHHHHHHHTTCCEEEEECCCSSCHHHHHHHH
T ss_pred             CCcCccHHHHHHHHHHCCCCEEEEeCCCCCCHHHHHHHH
Confidence            333488999999999999999999988877777766654

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.0014  Score=58.68  Aligned_cols=43  Identities=7%  Similarity=0.113  Sum_probs=38.2

Q ss_pred             ccCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           344 ENRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       344 ~d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .-.+.|++.+++++|+++|+++.++|+.+........+.+|+.
T Consensus       125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~~~~~~~  167 (253)
T d1zs9a1         125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEG  167 (253)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTB
T ss_pred             ccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHHHHcCcc
Confidence            3456899999999999999999999999999888888888874

>d1wpga3 d.220.1.1 (A:361-599) Calcium ATPase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Metal cation-transporting ATPase, ATP-binding domain N
superfamily: Metal cation-transporting ATPase, ATP-binding domain N
family: Metal cation-transporting ATPase, ATP-binding domain N
domain: Calcium ATPase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.77  E-value=0.00059  Score=62.02  Aligned_cols=56  Identities=29%  Similarity=0.434  Sum_probs=40.3

Q ss_pred             cchhHHHHHHHHH--hhccCeEEEEEEecCCchhHHHh--hhcchhhhhccceeeeeeee
Q psy78           288 FVPENIVSVLSEY--TEQGYRVIALASRTLSIEDYKHL--NYMKREDIEKDLEFLGLIIL  343 (523)
Q Consensus       288 ~~~~~~~~~~~~~--~~~G~r~l~~a~k~l~~~~~~~~--~~~~~~~~e~dl~~lG~i~~  343 (523)
                      +.++.+.+.++.+  +++|+|||++|||+++.+.....  .....+.+|+||+|+|++++
T Consensus       180 ~~~~~~~~~~~~~~~a~~glRvLa~A~k~~~~~~~~~~~~~~~~~~~~E~~L~flGlvgi  239 (239)
T d1wpga3         180 PVKEKILSVIKEWGTGRDTLRCLALATRDTPPKREEMVLDDSSRFMEYETDLTFVGVVGM  239 (239)
T ss_dssp             HHHHHHHHHHHHHTTSSCCCEEEEEEEESSCCCGGGCCTTCGGGHHHHTCSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhHhhCCCEEEEEEEEECCcccccccccchhhHHHhcCCCEEEEEECC
Confidence            3455666667765  78999999999999975432211  11345678999999999985

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=96.75  E-value=0.0005  Score=60.60  Aligned_cols=40  Identities=13%  Similarity=0.236  Sum_probs=35.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.+.++.|++ ++++.++|+.+...+..+.+.+|+.
T Consensus        82 ~~~~g~~~~L~~l~~-~~~~~ivT~~~~~~~~~~l~~~~l~  121 (207)
T d2hdoa1          82 ELYPGITSLFEQLPS-ELRLGIVTSQRRNELESGMRSYPFM  121 (207)
T ss_dssp             EECTTHHHHHHHSCT-TSEEEEECSSCHHHHHHHHTTSGGG
T ss_pred             ccccchhhhhhhhcc-ccccccccccccccccccccccccc
Confidence            356899999999975 6999999999999999999999885

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.0022  Score=58.31  Aligned_cols=56  Identities=16%  Similarity=0.277  Sum_probs=40.8

Q ss_pred             eeeeeccCCCcchHHHHHHHHhCCCcEEEEc---CCCHhhHHHHHHHcCccCCCCeEEE
Q psy78           339 GLIILENRLKPQTEGVIKELKDARVKVVMIT---GDNIQTAISVAKECGIIDPGETVVD  394 (523)
Q Consensus       339 G~i~~~d~lr~~t~~aI~~Lk~~Gi~vvi~T---Gr~~~~a~~ia~~lgi~~~~~~~i~  394 (523)
                      |++.-.+.+=+++.++|++|+++|++++++|   +|.........+++|++.+...++.
T Consensus        12 GTL~~~~~~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~~~~~l~~~G~~~~~~~i~~   70 (250)
T d2c4na1          12 GVLMHDNVAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYT   70 (250)
T ss_dssp             TTTEETTEECTTHHHHHHHHHHTTCCEEEEESCCSCCHHHHHHHHHHTTCCCCGGGEEE
T ss_pred             CeeEECCCcCccHHHHHHHHHHCCCcEEEEeCCCCCCHHHHHHHHhhccccccceeEec
Confidence            3333344444789999999999999999998   5667777666778898765554443

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=96.63  E-value=0.0021  Score=56.31  Aligned_cols=40  Identities=15%  Similarity=0.125  Sum_probs=32.7

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCHh----hHHHHHHHcCcc
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNIQ----TAISVAKECGII  386 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~----~a~~ia~~lgi~  386 (523)
                      +.|++++.++.++++|++|+.+|||...    ++..+.+.+|+.
T Consensus        87 p~pga~~fl~~~~~~Gv~IfyVTnR~~~~~e~T~~nL~K~lG~p  130 (209)
T d2b82a1          87 PKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIP  130 (209)
T ss_dssp             ECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHHHHHTTCC
T ss_pred             cchhHHHHHHHHHHcCCeEEEEeCCchhhHHHHHHHHHHHcCCC
Confidence            4579999999999999999999999743    455555668875

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=96.38  E-value=0.0028  Score=55.99  Aligned_cols=41  Identities=10%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      .++-|++.+.++.|++.|+++.++|++..  +....+.+|+..
T Consensus        90 ~~~~~g~~~~l~~l~~~~~~i~i~s~~~~--~~~~l~~~~l~~  130 (221)
T d1o08a_          90 ADVYPGILQLLKDLRSNKIKIALASASKN--GPFLLERMNLTG  130 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCGG
T ss_pred             ccccCCceeccccccccccceEEEeecch--hhHHHHhhcccc
Confidence            45778999999999999999999999754  567788888753

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.14  E-value=0.0077  Score=51.70  Aligned_cols=40  Identities=10%  Similarity=0.184  Sum_probs=33.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      .+.+++.+.|+.|+++|++++++|+.+.... ...+.+++.
T Consensus        79 ~~~~gv~~~l~~l~~~g~~~~i~Sn~~~~~~-~~l~~~~l~  118 (187)
T d2fi1a1          79 ILFEGVSDLLEDISNQGGRHFLVSHRNDQVL-EILEKTSIA  118 (187)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCTHHH-HHHHHTTCG
T ss_pred             cccchhHHHHHHHHhhhccccccccCccchh-hhhhhhccc
Confidence            4668999999999999999999999876544 567888875

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=96.06  E-value=0.0033  Score=57.37  Aligned_cols=50  Identities=22%  Similarity=0.347  Sum_probs=36.9

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcC---CCHhhHHHHHHHcCccCCCCeEEE
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITG---DNIQTAISVAKECGIIDPGETVVD  394 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TG---r~~~~a~~ia~~lgi~~~~~~~i~  394 (523)
                      ++.=+++.++|++|+++|++++++|+   |+........+++|++...+.+++
T Consensus        22 ~~~i~~a~e~l~~l~~~g~~~~~~TN~~~~~~~~~~~~~~~~g~~~~~~~v~t   74 (261)
T d1vjra_          22 DSLLPGSLEFLETLKEKNKRFVFFTNNSSLGAQDYVRKLRNMGVDVPDDAVVT   74 (261)
T ss_dssp             TEECTTHHHHHHHHHHTTCEEEEEESCTTSCHHHHHHHHHHTTCCCCGGGEEE
T ss_pred             CccCchHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhhccccccceecc
Confidence            34448999999999999999999985   555555566677888655444443

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.91  E-value=0.02  Score=51.03  Aligned_cols=41  Identities=20%  Similarity=0.383  Sum_probs=36.1

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      .+.|++.++|++|+ +|++++++|+.+........+.+|+..
T Consensus       109 ~~~~~~~~~L~~L~-~~~~l~i~Tn~~~~~~~~~l~~~gl~~  149 (247)
T d2gfha1         109 ILADDVKAMLTELR-KEVRLLLLTNGDRQTQREKIEACACQS  149 (247)
T ss_dssp             CCCHHHHHHHHHHH-TTSEEEEEECSCHHHHHHHHHHHTCGG
T ss_pred             ccCccHHHHHHHhh-cccceEEeecccchhhhhhhhhccccc
Confidence            46799999999998 589999999999988889999999863

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=95.84  E-value=0.0082  Score=52.84  Aligned_cols=26  Identities=31%  Similarity=0.413  Sum_probs=23.3

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGD  371 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr  371 (523)
                      ++-|++.++|++|+++|++++++|-.
T Consensus        48 ~l~pgv~e~L~~L~~~G~~l~IvTNQ   73 (209)
T d2o2xa1          48 VLRPQMLPAIATANRAGIPVVVVTNQ   73 (209)
T ss_dssp             CBCGGGHHHHHHHHHHTCCEEEEEEC
T ss_pred             EecccHHHHHHHHHhhCCeEEEeccc
Confidence            36789999999999999999999953

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.55  E-value=0.016  Score=51.19  Aligned_cols=40  Identities=30%  Similarity=0.401  Sum_probs=35.5

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCcc
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGII  386 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~  386 (523)
                      ++.|++.++|+.|+ +|++++++|+.+......+.+.+|+.
T Consensus       100 ~~~p~~~~~L~~l~-~~~~i~i~Sn~~~~~~~~~l~~~gl~  139 (230)
T d1x42a1         100 ELYPEVVEVLKSLK-GKYHVGMITDSDTEYLMAHLDALGIK  139 (230)
T ss_dssp             CBCTTHHHHHHHHB-TTBEEEEEESSCHHHHHHHHHHHTCG
T ss_pred             cccccHHHHHHHhh-ccCceeeeeccccccchhhhcccccc
Confidence            46789999999997 57999999999998899999999985

>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Membrane and cell surface proteins and peptides
fold: Calcium ATPase, transmembrane domain M
superfamily: Calcium ATPase, transmembrane domain M
family: Calcium ATPase, transmembrane domain M
domain: Calcium ATPase, transmembrane domain M
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.54  E-value=0.02  Score=56.98  Aligned_cols=93  Identities=11%  Similarity=0.077  Sum_probs=59.6

Q ss_pred             ccchhHHHHHHHHHHhhheee-e-cCCCcccccccchhHHHHHHHHHHHhhheeecCchHHHHhccccCCCCCchHHHHH
Q psy78            39 YENYAVFSISMFQYIILAITF-S-QGKPYRTPIYKNKLFILSIIIMTWVCIYITLIPSEFIIQFLQLRFPPNMQFPLIVI  116 (523)
Q Consensus        39 ~~nt~~Fl~s~~qyi~~~~v~-s-~G~Pfr~~~~~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~f~~~l~  116 (523)
                      +..|..|....+.++..++.. + ..+-||+++++|+++.+++++.+++.+.++..|  ++++.|++.++|.   ...+ 
T Consensus       373 ~a~T~~F~~lv~~q~~~~~~~rs~~~s~~~~~~~~N~~l~~av~i~~~l~~~i~yiP--~l~~vf~~~pL~~---~~w~-  446 (472)
T d1wpga4         373 EPMTMALSVLVTIEMCNALNSLSENQSLMRMPPWVNIWLLGSICLSMSLHFLILYVD--PLPMIFKLKALDL---TQWL-  446 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSCSSCCTTTSCGGGCHHHHHHHHHHHHHHHHHHHST--TTHHHHTCCCCCH---HHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcchhhcCccccHHHHHHHHHHHHHHHHHHHhh--HHHHHHcccCCCH---HHHH-
Confidence            345777777777666665544 3 244599999999999988888887776655444  5778899987763   2222 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy78           117 YLAICNFVLSLFIENFIIHYLLM  139 (523)
Q Consensus       117 ~~~~~~~~~~~~~E~~~~~~~~~  139 (523)
                       +.+...++.+++++. .+++.|
T Consensus       447 -i~l~~~~~~~~~~El-~K~~~R  467 (472)
T d1wpga4         447 -MVLKISLPVIGLDEI-LKFIAR  467 (472)
T ss_dssp             -HHHHHHTHHHHHHHH-HHHHHH
T ss_pred             -HHHHHHHHHHHHHHH-HHHHhh
Confidence             233344555666664 344433

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.017  Score=49.41  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=24.5

Q ss_pred             CCcchHHHHHHHHhCCCcEEEEcCCCH
Q psy78           347 LKPQTEGVIKELKDARVKVVMITGDNI  373 (523)
Q Consensus       347 lr~~t~~aI~~Lk~~Gi~vvi~TGr~~  373 (523)
                      +-|++.++|++|+++|++++++|..+.
T Consensus        28 ~~~gv~e~l~~L~~~g~~~~ivTNq~~   54 (182)
T d2gmwa1          28 FIDGVIDAMRELKKMGFALVVVTNQSG   54 (182)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEECTH
T ss_pred             ECCCHHHHHHHHhhcCchhhhhhccch
Confidence            558999999999999999999998764

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=95.13  E-value=0.049  Score=47.26  Aligned_cols=43  Identities=19%  Similarity=0.275  Sum_probs=37.4

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ..+.+++.++++.+++.|+++.++|+-+........+..++..
T Consensus        92 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~~  134 (220)
T d1zrna_          92 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLRD  134 (220)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCGG
T ss_pred             ccccchhHHHHHHHHhcCCeEEeecchHHHHHHHHHhhccccc
Confidence            3456899999999999999999999999988888888888753

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=94.60  E-value=0.034  Score=50.00  Aligned_cols=40  Identities=15%  Similarity=-0.027  Sum_probs=30.5

Q ss_pred             HhHHHHHHHHHHCCCEEEEEcCChh-hHHHHHhCCc-cEEec
Q psy78           477 DQKQQLVLELQQLGYYVAMCGDGAN-DCGALRAAHA-GISLS  516 (523)
Q Consensus       477 ~~K~~~i~~L~~~~~~V~a~GDG~N-D~~MLk~A~v-GIAMg  516 (523)
                      .--..+++.+.-..++++||||..+ |+.+=+.||+ +|.+.
T Consensus       184 ~~~~~al~~l~i~~~~~~mIGDs~~~DI~gA~~aG~~si~V~  225 (253)
T d1wvia_         184 VIMNKALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLVT  225 (253)
T ss_dssp             HHHHHHHHHHTSCGGGEEEEESCTTTTHHHHHHTTCEEEEES
T ss_pred             ccceehhhhccccccceEEEcCChHHHHHHHHHCCCCEEEEC
Confidence            3334556666555789999999965 9999999998 66664

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.05  E-value=0.026  Score=49.23  Aligned_cols=37  Identities=16%  Similarity=0.027  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHCCCEEEEEcCChhhHHHHHhCCc-cEEe
Q psy78           479 KQQLVLELQQLGYYVAMCGDGANDCGALRAAHA-GISL  515 (523)
Q Consensus       479 K~~~i~~L~~~~~~V~a~GDG~ND~~MLk~A~v-GIAM  515 (523)
                      -..+++.+.-..+++++|||..+|+.+=+.||+ +|-+
T Consensus       163 ~~~~~~~~~v~p~~~l~IgD~~~Di~~A~~aG~~ti~V  200 (222)
T d1cr6a1         163 YNFLLDTLKAKPNEVVFLDDFGSNLKPARDMGMVTILV  200 (222)
T ss_dssp             HHHHHHHHTSCTTSEEEEESSSTTTHHHHHHTCEEEEC
T ss_pred             HHHHHHHhCCCcceEEEEECCHHHHHHHHHcCCEEEEE
Confidence            344555555567889999999999999999997 4443

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.024  Score=47.44  Aligned_cols=27  Identities=30%  Similarity=0.425  Sum_probs=23.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCC
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDN  372 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~  372 (523)
                      .+-|++.++|+.|+++|++++++|..+
T Consensus        30 ~~~pgv~e~L~~L~~~g~~l~i~TNq~   56 (161)
T d2fpwa1          30 AFEPGVIPQLLKLQKAGYKLVMITNQD   56 (161)
T ss_dssp             CBCTTHHHHHHHHHHTTEEEEEEEECT
T ss_pred             eECccHHHHHHHHHHcCCceeeecccc
Confidence            356899999999999999999999653

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.44  E-value=0.057  Score=46.57  Aligned_cols=30  Identities=7%  Similarity=0.118  Sum_probs=25.8

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhh
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQT  375 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~  375 (523)
                      ++.+++.+++.+|+++|+++.++|+.....
T Consensus        99 ~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~  128 (225)
T d1zd3a1          99 KINRPMLQAALMLRKKGFTTAILTNTWLDD  128 (225)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCC
T ss_pred             CCCccHHHHHHHHHhccCccccccccchhh
Confidence            467899999999999999999999765443

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=92.26  E-value=0.022  Score=48.17  Aligned_cols=31  Identities=19%  Similarity=0.460  Sum_probs=26.2

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhH
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTA  376 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a  376 (523)
                      ++.+++.+.+..++++|+++.++|+-+...+
T Consensus        84 ~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~  114 (197)
T d2b0ca1          84 ALRPEVIAIMHKLREQGHRVVVLSNTNRLHT  114 (197)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEECCCCCTT
T ss_pred             ccCchhHHHHHHHHhcCCeEEEEeCccHHHH
Confidence            4678999999999999999999998665444

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.68  E-value=0.045  Score=47.67  Aligned_cols=40  Identities=5%  Similarity=0.054  Sum_probs=32.6

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      ..+.+++.+.+++++.   +..++|+.....+....+.+|+..
T Consensus        84 ~~~~~g~~~~L~~l~~---~~~i~t~~~~~~~~~~l~~~~l~~  123 (222)
T d2fdra1          84 VKIIDGVKFALSRLTT---PRCICSNSSSHRLDMMLTKVGLKP  123 (222)
T ss_dssp             CCBCTTHHHHHHHCCS---CEEEEESSCHHHHHHHHHHTTCGG
T ss_pred             cchhhhHHHHhhhccc---cceeeeecchhhhhhhhccccccc
Confidence            3467889999888765   456899999999999999999863

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=90.54  E-value=0.37  Score=41.97  Aligned_cols=41  Identities=15%  Similarity=0.257  Sum_probs=33.7

Q ss_pred             cCCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHHHcCccC
Q psy78           345 NRLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAKECGIID  387 (523)
Q Consensus       345 d~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~~lgi~~  387 (523)
                      .++-+++.+++++|+  |+.+.++|..+...+....+..|+..
T Consensus        92 ~~~~~~~~~~L~~l~--~~~~~v~s~~~~~~~~~~~~~~~~~~  132 (245)
T d1qq5a_          92 LTPYPDAAQCLAELA--PLKRAILSNGAPDMLQALVANAGLTD  132 (245)
T ss_dssp             CCBCTTHHHHHHHHT--TSEEEEEESSCHHHHHHHHHHTTCGG
T ss_pred             cccchhhhHHHHHHh--hhceeEEeccchHHHHHHHhhccccc
Confidence            356789999999885  67889999999988888888888753

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=88.62  E-value=0.22  Score=39.06  Aligned_cols=36  Identities=8%  Similarity=0.074  Sum_probs=30.0

Q ss_pred             CCCcchHHHHHHHHhCCCcEEEEcCCCHhhHHHHHH
Q psy78           346 RLKPQTEGVIKELKDARVKVVMITGDNIQTAISVAK  381 (523)
Q Consensus       346 ~lr~~t~~aI~~Lk~~Gi~vvi~TGr~~~~a~~ia~  381 (523)
                      ++-+++.+.|++|++.|+++++.|||+........+
T Consensus        21 kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~t~~   56 (122)
T d2obba1          21 EEIPFAVETLKLLQQEKHRLILWSVREGELLDEAIE   56 (122)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHCCCeEEEEecCCCcchHHHHH
Confidence            467899999999999999999999998765444333