Psyllid ID: psy7924
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | 2.2.26 [Sep-21-2011] | |||||||
| Q7PIR5 | 793 | Facilitated trehalose tra | yes | N/A | 0.866 | 0.525 | 0.391 | 1e-83 | |
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.866 | 0.806 | 0.374 | 1e-82 | |
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.808 | 0.771 | 0.413 | 7e-81 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.866 | 0.517 | 0.381 | 1e-80 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.885 | 0.872 | 0.376 | 4e-79 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.883 | 0.870 | 0.375 | 4e-78 | |
| B4HNS0 | 857 | Facilitated trehalose tra | N/A | N/A | 0.877 | 0.492 | 0.372 | 9e-78 | |
| Q8MKK4 | 488 | Facilitated trehalose tra | no | N/A | 0.883 | 0.870 | 0.375 | 5e-77 | |
| B3NSE1 | 856 | Facilitated trehalose tra | N/A | N/A | 0.877 | 0.492 | 0.370 | 1e-75 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.827 | 0.792 | 0.397 | 1e-75 |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 183/467 (39%), Positives = 269/467 (57%), Gaps = 50/467 (10%)
Query: 6 GWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
+TSPA DR I F VT+ S++G M L + G + G +++ +GRKNT+L
Sbjct: 351 AYTSPALVSMKDRNITS---FEVTDQSGSWVGGIMPLAGLAGGILGGPMIEYLGRKNTIL 407
Query: 62 LLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGET 121
A P FI S + +G +V VGR + L + + S + LGET
Sbjct: 408 ATATP--------FIISWLLIGCATHVAMV-----LVGRALSGLCVGIASLSLPVYLGET 454
Query: 122 SQVTVWVLISTTNRRISD----KCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYG 177
Q V + + CFV +L G
Sbjct: 455 VQPEVRGTLGLLPTAFGNIGILLCFVAGKYL-------------------------DWSG 489
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237
L+ + A LPI F+ LM L+PE+P++++ +NR +A+++LQW RG + D++ E+ + S
Sbjct: 490 LAFLGAALPIPFLLLMFLIPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGISKSH 549
Query: 238 EK-ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPN 296
+ ER M A + LLI LG+MF QQ GINAV+FYTV+IF+ AGS+++
Sbjct: 550 QDAERHASSSAMLDLLNKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGSTIDEK 609
Query: 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356
LCTIIVG + + T+IAT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+G DVS I
Sbjct: 610 LCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEI 669
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416
GWLPL + VF++ FSLGFGPIPW+++GEI P +I+G A S+A FNW VVTK F D
Sbjct: 670 GWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFAD 729
Query: 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
+T +G HGAFW+F I +G +F + VPET+GK+L++I+ ++ G
Sbjct: 730 ITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKMMGR 776
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 307 bits (786), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 175/467 (37%), Positives = 267/467 (57%), Gaps = 50/467 (10%)
Query: 6 GWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
+TSPA DR I F VT+ S++G M L + G + G L++ +GRKNT+L
Sbjct: 75 AYTSPALVSMKDRNITS---FEVTDQSGSWVGGIMPLAGLVGGILGGPLIEYLGRKNTIL 131
Query: 62 LLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGET 121
A P + L + +A+ VGR + + V S + LGET
Sbjct: 132 ATATPFIISWLLIACATHVAM-------------VLVGRALSGFSVGVASLSLPVYLGET 178
Query: 122 SQVTVWVLISTTNRRISD----KCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYG 177
Q V + + CFV +++
Sbjct: 179 VQPEVRGTLGLLPTAFGNIGILLCFVAGNYM-------------------------DWSE 213
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNS 236
L+ + A LP+ F+ LM L+PE+P++++ + R +A+++LQW RG + D+D E+ +++
Sbjct: 214 LAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSH 273
Query: 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPN 296
+ ER M + LLI LG+MF QQ GINAV+FYTV+IF+DAGS+++ N
Sbjct: 274 QDAERHASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDEN 333
Query: 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356
LCTIIVG + + T+IAT+++DRLGR++LL +S + M ++ +T+G +FY+KN+G DVS+I
Sbjct: 334 LCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHI 393
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416
GWLPL S +F++ FSLGFGPIPW+++GEI P +I+G A S+A FNW VVTK F D
Sbjct: 394 GWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFAD 453
Query: 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
+ +G HGAFW+F + +G VF + VPET+GK+L++I+ ++ G
Sbjct: 454 IIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDIERKMCGR 500
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 171/414 (41%), Positives = 254/414 (61%), Gaps = 25/414 (6%)
Query: 68 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVW 127
VTE + S++G M L + G G ++ +GRKNT+L AVP F + LL + ++W
Sbjct: 81 VTEQEASWVGGIMPLAGLAGGIAGGPFIEYLGRKNTILATAVP-FIVAWLLIAFAN-SIW 138
Query: 128 VLISTTNRRISDKCFVGSDHLAI-----------------LCPISISQSRRLAQVIKERK 170
++++ R +S C VG L++ L P + L + +
Sbjct: 139 MVLA--GRALSGFC-VGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKY 195
Query: 171 FEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEI 230
S GL+ I ++LPI F+ L LL+PE+P++ + + R ++A+++LQW RG + D++ E+
Sbjct: 196 VNWS--GLAFIGSILPIPFMVLTLLIPETPRWFVTRGREERARKALQWLRGKKADVEPEL 253
Query: 231 TDM-QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDA 289
+ ++ E ER + + + LLI LG+MF QQ GINAV+FYTV IFKDA
Sbjct: 254 KGIVKSHCEAERHASQNAIFDLMKRSNLKPLLIALGLMFFQQLSGINAVIFYTVSIFKDA 313
Query: 290 GSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNS 349
GS+++ NLCTIIVG + T+ AT+++DRLGR+ILL +S V M ++ LT+G +FY KNS
Sbjct: 314 GSTIDENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNS 373
Query: 350 GSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLV 409
G+DVSNIGWLPL S +++I FS G GPIPW+++GEI P +I+G A S+A FNW +
Sbjct: 374 GNDVSNIGWLPLASFVIYVIGFSSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFI 433
Query: 410 VTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
VTK F D+ +G HGAFW F VI +G F VPET+GK+L+EI+ ++ G
Sbjct: 434 VTKTFADIVAAIGNHGAFWFFGVICLIGLFFVIFFVPETQGKSLEEIERKMMGR 487
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High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 301 bits (770), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 178/467 (38%), Positives = 265/467 (56%), Gaps = 50/467 (10%)
Query: 6 GWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
+TSPA DR I F VT+ S++G M L + G + G L++ +GRKNT+L
Sbjct: 364 AYTSPALVSMKDRNITS---FEVTDQSGSWVGGIMPLAGLAGGILGGPLIEYLGRKNTIL 420
Query: 62 LLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGET 121
A P FI S + + +V VGR + + V S + LGET
Sbjct: 421 ATATP--------FIISWLLIACATHVAMV-----LVGRALSGFSVGVASLSLPVYLGET 467
Query: 122 SQVTVWVLISTTNRRISD----KCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYG 177
Q V + + CFV ++ G
Sbjct: 468 VQPEVRGTLGLLPTAFGNIGILLCFVAGKYM-------------------------DWSG 502
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM-QNS 236
L+ + A LPI F+ LM L+PE+P++++ + R +A+++LQW RG + D+D E+ + ++
Sbjct: 503 LAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSH 562
Query: 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPN 296
+ ER M A + LLI LG+MF QQ GINAV+FYTV+IF+DAGS+++ N
Sbjct: 563 QDAERHASQSAMLDLMKKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDEN 622
Query: 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356
LCTIIVG + + T+IATM++DRLGR++LL +S V M ++ +T+G +FY+KNSG DVS +
Sbjct: 623 LCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQV 682
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416
GWLPL + ++++ FSLGFGPIPW+++GEI P +I+G A S+A FNW +VTK F D
Sbjct: 683 GWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFAD 742
Query: 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
+ +G HG FW+F I +G F VPET+GK+L++I+ ++ G
Sbjct: 743 IINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDIERKMMGR 789
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High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 295 bits (756), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 176/468 (37%), Positives = 268/468 (57%), Gaps = 42/468 (8%)
Query: 1 MGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 56
+G + +TSPA DR I F VT+ S++G M L A+ G G L++ +GR
Sbjct: 42 VGFVSAYTSPALVSMTDRTITS---FEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGR 98
Query: 57 KNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRP 116
+ T+L AVP FI SS+ + V ++ GR T + + S +
Sbjct: 99 RTTILATAVP--------FIVSSLLIACA-----VNVIMILCGRFLTGFCVGIASLSLPV 145
Query: 117 LLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVY 176
LGET Q V L +L P ++ L + S+
Sbjct: 146 YLGETLQPEV------------------RGTLGLL-PTALGNIGILVCYVAGSFMNWSM- 185
Query: 177 GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQN 235
L+ + A LP+ F+ LM+++PE+P++ + + + ++A+++L+W RG E D++ E+ D MQ+
Sbjct: 186 -LAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQS 244
Query: 236 SLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNP 295
E + + + L I LG+MF QQF GINAV+FYTV+IFKDAGS+++
Sbjct: 245 QAEADSQARRNTCLELFKRINLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDS 304
Query: 296 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355
NLCTIIVG + T++ +++DRLGR+ILL +S + M L+ +G +FY K G DVS+
Sbjct: 305 NLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGFFYCKAHGPDVSH 364
Query: 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG 415
+GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+ FNW VVTK F
Sbjct: 365 LGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQ 424
Query: 416 DVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
D+T+ +G HGAFW+F V+ +G F I VPET+GK+L+EI+ ++ G
Sbjct: 425 DLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIERKMMGR 472
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 292 bits (747), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 176/469 (37%), Positives = 272/469 (57%), Gaps = 44/469 (9%)
Query: 1 MGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 56
+G + +TSPA DR I F VT+ S++G M L A+ G G L++ +GR
Sbjct: 42 VGFVSAYTSPALVSMTDRTITS---FEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGR 98
Query: 57 KNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRP 116
+N T+ + + FI SS+ + V ++ GR T + + S +
Sbjct: 99 RN--------TILATAVPFIVSSLLIACA-----VNVIMILCGRFLTGFCVGIASLSLPV 145
Query: 117 LLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVY 176
LGET Q V L +L P ++ L + S+
Sbjct: 146 YLGETLQPEV------------------RGTLGLL-PTALGNIGILVCYVAGSFMNWSI- 185
Query: 177 GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQN 235
L+ + A LP+ F+ LM+++PE+P++ + + + ++A+++L+W RG E D++ E+ D MQ+
Sbjct: 186 -LAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQS 244
Query: 236 SLEKE-RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN 294
E + ++ + ++ F K L I LG+MF QQF GINAV+FYTV+IFKDAGS+++
Sbjct: 245 QAEADSQATRNTCLELFKRINLKP-LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTID 303
Query: 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354
NLCTIIVG + T++ +++DRLGR+ILL VS + M L+ +G +FY K G DVS
Sbjct: 304 SNLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVS 363
Query: 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFF 414
++GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+ FNW VVTK F
Sbjct: 364 HLGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTF 423
Query: 415 GDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
D+T+ +G HGAFW+F V+ +G F I VPET+GK+L+EI+ ++ G
Sbjct: 424 QDLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEIERKMMGR 472
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|B4HNS0|TRE11_DROSE Facilitated trehalose transporter Tret1-1 OS=Drosophila sechellia GN=Tret1-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 291 bits (745), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 176/472 (37%), Positives = 263/472 (55%), Gaps = 50/472 (10%)
Query: 1 MGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 56
+G + +TSPA DR I F VT+ S++G M L A+ G G L++ +GR
Sbjct: 410 VGFVSAYTSPALVSMTDRNITS---FEVTQDAGSWVGGIMPLAALAGGITGGPLIEYLGR 466
Query: 57 KNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRP 116
+NT+L AVP FI SS+ + +V GR + + S +
Sbjct: 467 RNTILATAVP--------FIVSSLLIACAVNVAMV-----LCGRFLAGFCVGIASLSLPV 513
Query: 117 LLGETSQVTVWVLISTTNRRISD----KCFVGSDHLAILCPISISQSRRLAQVIKERKFE 172
LGET Q V + + CFV +
Sbjct: 514 YLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFM------------------------ 549
Query: 173 ASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD 232
+ L+ + A LP+ F+ LM L+PE+P++ + + ++A+++L+W RG E D++ E+
Sbjct: 550 -NWSMLAFLGAALPVPFLILMFLIPETPRWFVGRGLEERARKALKWLRGKEADVEPELKG 608
Query: 233 -MQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGS 291
M++ + +R M + L I LG+MF QQF GINAV+FYTV+IFKDAGS
Sbjct: 609 LMRSQADADRQASRNTMLELLKLNNLKPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGS 668
Query: 292 SLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS 351
+++ NLCTIIVG + + T+I +++DR GR+ILL VS + M L+ +G +FY K +G
Sbjct: 669 TIDGNLCTIIVGIVNFLATFIGIVLIDRAGRKILLYVSDIAMVLTLFVLGGFFYCKANGP 728
Query: 352 DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVT 411
DVS++GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+A FNW VVT
Sbjct: 729 DVSHLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVT 788
Query: 412 KFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
K F D+T+ +G HGAFW+F I +G F I VPET+GKTL++I+ ++ G
Sbjct: 789 KTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGR 840
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila sechellia (taxid: 7238) |
| >sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (738), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 176/469 (37%), Positives = 272/469 (57%), Gaps = 44/469 (9%)
Query: 1 MGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 56
+G + +TSPA DR I F VT+ S++G M L A+ G G L++ +GR
Sbjct: 42 VGFVSAYTSPALVSMTDRTITS---FEVTKDAGSWVGGIMPLAALAGGITGGPLIEYLGR 98
Query: 57 KNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRP 116
++T+L AVP FI SS+ + V ++ GR T + + S +
Sbjct: 99 RSTILATAVP--------FIVSSLLIACA-----VNVIMILCGRFLTGFCVGIASLSLPV 145
Query: 117 LLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVY 176
LGET Q V L +L P ++ L + S+
Sbjct: 146 YLGETLQPEV------------------RGTLGLL-PTALGNIGILVCYVAGSFMNWSM- 185
Query: 177 GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQN 235
L+ + A LP+ F+ LM+++PE+P++ + + + ++A+++L+W RG E D++ E+ + MQ+
Sbjct: 186 -LAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQS 244
Query: 236 SLEKER-SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN 294
+ +R + + ++ F K L I LG+MF QQF GINAV+FYTV+IFKDAGS+++
Sbjct: 245 QADADRQATQNTCLELFKRNNLKP-LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTID 303
Query: 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354
NL TIIVG + T++ +++DRLGR+ILL VS + M ++ +G +FY K G DVS
Sbjct: 304 SNLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILGGFFYCKAHGPDVS 363
Query: 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFF 414
++GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+ FNW VVTK F
Sbjct: 364 HLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTF 423
Query: 415 GDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
D+T+ +G HGAFW+F I +G F I VPET+GK+L+EI+ ++ G
Sbjct: 424 QDLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIERKMMGR 472
|
Fails to transport trehalose. Drosophila melanogaster (taxid: 7227) |
| >sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 175/472 (37%), Positives = 260/472 (55%), Gaps = 50/472 (10%)
Query: 1 MGTILGWTSPA----GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 56
+G + +TSPA DR I F VT+ S++G M L + G G L++ +GR
Sbjct: 409 VGFVSAYTSPALVSMTDRNITS---FEVTQDAGSWVGGIMPLAGLAGGIAGGPLIEYLGR 465
Query: 57 KNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRP 116
+NT+L AVP FI SS+ + +V GR + + S +
Sbjct: 466 RNTILATAVP--------FIVSSLLIACAVNVAMV-----LCGRFLAGFCVGIASLSLPV 512
Query: 117 LLGETSQVTVWVLISTTNRRISD----KCFVGSDHLAILCPISISQSRRLAQVIKERKFE 172
LGET Q V + + CFV +
Sbjct: 513 YLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGSFM------------------------ 548
Query: 173 ASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD 232
+ L+ + A LP+ F+ LM L+PE+P++ + + R ++A+++L W RG E D++ E+
Sbjct: 549 -NWSMLAFLGAALPVPFLILMFLIPETPRWFVSRGREERARKALSWLRGKEADVEPELKG 607
Query: 233 -MQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGS 291
M++ + +R M + L I LG+MF QQ GINAV+FYTV+IFKDAGS
Sbjct: 608 LMRSQADADRQATQNTMLELLKRNNLKPLSISLGLMFFQQLSGINAVIFYTVQIFKDAGS 667
Query: 292 SLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS 351
+++ N+CTIIVG + + T+I +++DR GR+ILL VS + M L+ +G +FY K G
Sbjct: 668 TIDGNICTIIVGVVNFLATFIGIVLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKAHGP 727
Query: 352 DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVT 411
DVSN+GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+A FNW VVT
Sbjct: 728 DVSNLGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVT 787
Query: 412 KFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
K F D+T+ +G HGAFW+F I +G F I VPET+GKTL++I+ ++ G
Sbjct: 788 KTFQDLTVAMGAHGAFWLFGAICFVGLFFVIIYVPETQGKTLEDIERKMMGR 839
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila erecta (taxid: 7220) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (726), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 168/423 (39%), Positives = 254/423 (60%), Gaps = 25/423 (5%)
Query: 56 RKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIR 115
R NT A VT +IGS M L A+ G + G ++ +GR+NT+L A+P
Sbjct: 71 RDNTT---ATFEVTMDMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGW 127
Query: 116 PLLGETSQVTVWVLISTTNRRISDKCF-VGSDHLAILCPISISQSRR-----LAQVIKER 169
+ + V + ++ R I C V S L + SI R L V
Sbjct: 128 LFIALATNVAMILV----GRSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNS 183
Query: 170 K----FEASVY----GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRG 221
F A +Y L+++ A +PI F+ LM L+PE+P++++ K ++K+A++SLQW RG
Sbjct: 184 GILMCFTAGMYLAWRNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRG 243
Query: 222 SEYDIDSEITDMQN-SLEKER-SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVV 279
DI E+ +Q +E ER + + L++ F K + I LG+MF QQF GINAV+
Sbjct: 244 KTADISEELDSIQKMHIESERIATEGALIELFRKNHIK-PVFISLGLMFFQQFSGINAVI 302
Query: 280 FYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT 339
FYTV+IFKD+GS+++ NL TIIVG + ++T++A MI+DRLGR++LL +S+++M ++ T
Sbjct: 303 FYTVQIFKDSGSTVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFT 362
Query: 340 MGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399
G +FY+K DV+ GW+PL SL V++I FS GFGPIPW+++GEI P +I+G A S+A
Sbjct: 363 FGTFFYVKEL-MDVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVA 421
Query: 400 CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQME 459
FNW VVTK + D+ L +G +G FW+F + A+ +F I VPET+G++L+EI+
Sbjct: 422 TAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERR 481
Query: 460 LGG 462
G
Sbjct: 482 FAG 484
|
Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | ||||||
| 251736857 | 489 | sugar transporter 1 [Sitobion avenae] | 0.875 | 0.860 | 0.411 | 1e-103 | |
| 193575619 | 489 | PREDICTED: facilitated trehalose transpo | 0.875 | 0.860 | 0.411 | 1e-103 | |
| 291461561 | 485 | sugar transporter 1 [Nilaparvata lugens] | 0.914 | 0.907 | 0.422 | 8e-99 | |
| 328696470 | 508 | PREDICTED: facilitated trehalose transpo | 0.858 | 0.812 | 0.398 | 2e-92 | |
| 193596719 | 528 | PREDICTED: facilitated trehalose transpo | 0.858 | 0.782 | 0.392 | 5e-92 | |
| 119855473 | 486 | facilitative hexose transporter 1 [Nilap | 0.912 | 0.903 | 0.408 | 7e-92 | |
| 332019321 | 502 | Sugar transporter ERD6-like 7 [Acromyrme | 0.885 | 0.848 | 0.388 | 2e-88 | |
| 289742799 | 479 | solute carrier family 2 [Glossina morsit | 0.864 | 0.868 | 0.387 | 7e-87 | |
| 322796559 | 501 | hypothetical protein SINV_07455 [Solenop | 0.885 | 0.850 | 0.381 | 9e-85 | |
| 198466442 | 549 | GA23919 [Drosophila pseudoobscura pseudo | 0.866 | 0.759 | 0.390 | 2e-84 |
| >gi|251736857|gb|ACT10281.1| sugar transporter 1 [Sitobion avenae] | Back alignment and taxonomy information |
|---|
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/506 (41%), Positives = 297/506 (58%), Gaps = 85/506 (16%)
Query: 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
GT LGWT+PAG + +Y F+++ L+
Sbjct: 43 GTALGWTAPAGPMMENNQYSFVISNESLA------------------------------- 71
Query: 62 LLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGET 121
+IG+ M LGA+ G PV LVD +GRKN M++L +P+ ++
Sbjct: 72 -------------WIGACMPLGAMLGCPVTAGLVDKLGRKNMMIMLCIPTLVGWAMMIWA 118
Query: 122 SQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEAS------- 174
V W+ R ++ S L+++ P+ S+ I E++ +
Sbjct: 119 ESVA-WI---CAGRLLTG---FASGSLSVIVPLYTSE-------IAEKEIRGTLGTYFQL 164
Query: 175 -----------------VYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQ 217
V+GL+IICA++PI +V LM+L+PESP FHL K V++A+ SL+
Sbjct: 165 QVTGGILFTYIVGSYFDVFGLTIICAIIPIVYVALMVLIPESPNFHLMKGNVEKARLSLR 224
Query: 218 WFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINA 277
+FRG +D E++ MQ+SL K ++VPLM+AF T AKRGL IGLGVM +QQF G NA
Sbjct: 225 YFRGPYGTVDQELSIMQDSLAKTERERVPLMEAFQTTPAKRGLFIGLGVMLLQQFSGCNA 284
Query: 278 VVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST 337
V+FY IFK+AGS++ PN TIIVG + ++ T+++T+IVDRLGR+ILLL S V+MA+ T
Sbjct: 285 VIFYATYIFKEAGSAMEPNTSTIIVGIMSVIATYVSTLIVDRLGRKILLLSSIVVMAICT 344
Query: 338 LTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397
L +G +FY+K + DVS+IG++PL S+CVFI++FSLGFGPIPWML+GEIFP+QIKG A S
Sbjct: 345 LLIGAFFYMKANEYDVSSIGFIPLTSMCVFIVLFSLGFGPIPWMLIGEIFPAQIKGTACS 404
Query: 398 IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQ 457
+AC+ NW +VTKFF + + + FW+F++ + LG F +VPETKGKT+DEIQ
Sbjct: 405 VACMANWFFAFIVTKFFSSLVSAIHIYNTFWLFTLFSILGTFFVICIVPETKGKTMDEIQ 464
Query: 458 MELGGNGE--SNENVMVVVDTKDGKY 481
LG + + +DTK GKY
Sbjct: 465 EMLGAGSDLTPPTHANASIDTK-GKY 489
|
Source: Sitobion avenae Species: Sitobion avenae Genus: Sitobion Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193575619|ref|XP_001942953.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 208/506 (41%), Positives = 297/506 (58%), Gaps = 85/506 (16%)
Query: 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
GT LGWT+PAG + +Y F+++ +
Sbjct: 43 GTALGWTAPAGPMMENNQYSFVISNEN--------------------------------- 69
Query: 62 LLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGET 121
L++IG+ M LGA+ G PV LVD +GRKN ML+L +P+ ++
Sbjct: 70 -----------LAWIGACMPLGAMLGCPVTAGLVDKLGRKNMMLMLCIPTLVGWAMIIWA 118
Query: 122 SQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEAS------- 174
V W+ R ++ S L+++ P+ S+ I E++ +
Sbjct: 119 ESVA-WI---CAGRLLTG---FASGSLSVIVPLYTSE-------IAEKEIRGTLGTYFQL 164
Query: 175 -----------------VYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQ 217
V+GL+IICA++PI +V LM+L+PESP FHL K V++A+ SL+
Sbjct: 165 QVTGGILFTYVIGSYFNVFGLTIICAIIPIVYVALMVLIPESPNFHLMKGNVEKARLSLR 224
Query: 218 WFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINA 277
+FRG +D E++ MQ+SL K ++VPLM+AF T AKRGL IGLGVM +QQF G NA
Sbjct: 225 YFRGPYGTVDQELSIMQDSLAKTERERVPLMEAFQTTPAKRGLFIGLGVMLLQQFSGCNA 284
Query: 278 VVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST 337
V+FY IFK+AGS++ PN TIIVG + ++ T+++T+IVDRLGR+ILLL S ++MA+ T
Sbjct: 285 VIFYATFIFKEAGSAMEPNTSTIIVGIMSVLATYVSTLIVDRLGRKILLLSSIIVMAICT 344
Query: 338 LTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397
L +G +FY+K DVS+IG++PL S+CVFII+FSLGFGPIPWML+GEIFP+QIKG A S
Sbjct: 345 LLIGAFFYMKAYEYDVSSIGFIPLTSMCVFIILFSLGFGPIPWMLIGEIFPAQIKGTACS 404
Query: 398 IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQ 457
+AC+ NW +VTKFF + + + FW+F++ + LG F +VPETKGKT+DEIQ
Sbjct: 405 VACMANWFFAFIVTKFFSSLVSAIHIYNTFWLFTLFSILGTFFVICIVPETKGKTMDEIQ 464
Query: 458 MELGGNGE--SNENVMVVVDTKDGKY 481
LG + + +DTK+ KY
Sbjct: 465 EMLGAGSDLTPPTHANASIDTKE-KY 489
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|291461561|dbj|BAI83415.1| sugar transporter 1 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 367 bits (942), Expect = 8e-99, Method: Compositional matrix adjust.
Identities = 206/488 (42%), Positives = 292/488 (59%), Gaps = 48/488 (9%)
Query: 1 MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
+GT+LGWTSP L + Y F V ++IGS MA+GA+ G + ++DT GRK+T+
Sbjct: 39 LGTVLGWTSPVLTSL-SDYYGFEVNVDSQAWIGSIMAIGAMVGCLPMSWMLDTFGRKSTI 97
Query: 61 LLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDI----RP 116
++L VPTV M+++ PS + R
Sbjct: 98 IILTVPTVAA--------------------------------WMMIIFAPSVTVICIARF 125
Query: 117 LLGETSQVTVWVLISTTNRRISDKCFVGS--DHLAILCPISISQSRRLAQVIKERKFEAS 174
+LG T+ V + IS+ G+ + + I I+ + L ++
Sbjct: 126 ILGFTTGAYA-VAVPLYTSEISENEIRGTLGTYFQLQLTIGITSAYILGSLLP------- 177
Query: 175 VYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234
++ ++++C +P+ ML++PE+P ++LKK RV +A+++LQWFRGS YD++ E+ ++
Sbjct: 178 IFWMTMVCGCIPVVLALAMLIIPETPTYYLKKFRVDEARKALQWFRGSHYDVEPELMLLK 237
Query: 235 NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN 294
+L++ +++VP QAF T AKRGL++GLGVMF QQF G+NAV+FY IFK AGSS++
Sbjct: 238 ANLDQMEAERVPFTQAFVTTPAKRGLVVGLGVMFFQQFSGVNAVIFYAESIFKAAGSSMS 297
Query: 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354
P+L TIIVG IM+V TW+AT+ +DR GRR LLL+SA IMA+ T +G YF L D +
Sbjct: 298 PSLQTIIVGLIMVVMTWVATLAIDRAGRRPLLLISASIMAICTAILGVYFLLLEKTPDFA 357
Query: 355 N-IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKF 413
IG +P+ SL +FIIVFSLGFGPIPWM + EIFP QIKG A SIAC FNW SV +VTKF
Sbjct: 358 KTIGSVPIVSLSIFIIVFSLGFGPIPWMFMSEIFPPQIKGPACSIACFFNWFSVFMVTKF 417
Query: 414 FGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGNGESNENVMVV 473
FGD+ G +G FWIFS I+ G F LVPETKGK+++EIQ ELG + +
Sbjct: 418 FGDLQSKFGSYGTFWIFSGISIAGTFFVLNLVPETKGKSMEEIQKELGATPQMTPEDRME 477
Query: 474 VDTKDGKY 481
K K+
Sbjct: 478 NGQKPAKF 485
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328696470|ref|XP_001943804.2| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/477 (39%), Positives = 276/477 (57%), Gaps = 64/477 (13%)
Query: 1 MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
MGT LGWTSPAG + G+Y F
Sbjct: 81 MGTTLGWTSPAGPMMAHGQYGF-------------------------------------- 102
Query: 61 LLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSF-------- 112
+T+ D+S+I S M LGA+ G P +G LV+ +GRK+ M++L +P+
Sbjct: 103 ------PITDDDISWIASCMPLGAMLGCPFMGGLVNKLGRKSLMIMLTIPALLGWAMIIW 156
Query: 113 -------DIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQV 165
I L + + V++ I+DK G+ L + + V
Sbjct: 157 ADSVTMICIGRLFNGFASGSYSVIVPQYTAEIADKEIRGT--LGTYFQLQVFSGILFTYV 214
Query: 166 IKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYD 225
I V+GLSI CA++P + LM L+PESP F+L K + +A+ SL++FR
Sbjct: 215 IGSY---LDVFGLSIACAIVPAVYFCLMFLVPESPIFYLTKGNIIKARWSLKYFRRPFGQ 271
Query: 226 IDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI 285
+D E+ MQ+SL K +KVP+M+AF T AKRGL +GLGVM QF G N V+FYT I
Sbjct: 272 VDQELITMQDSLAKTEREKVPIMKAFQTTPAKRGLFLGLGVMVFMQFTGCNTVIFYTTTI 331
Query: 286 FKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFY 345
F +GS+++ N+ T+IVG + +++T+++T++VD+LGR+ILLL S + M + T +G +FY
Sbjct: 332 FNASGSTISSNVSTVIVGIMAVLSTYVSTLVVDKLGRKILLLYSVIAMGICTFLIGGFFY 391
Query: 346 LKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWV 405
K+S DVS+IG++PL SLCVFI++FS+GFGPIPWML+GEIFP QIKGIA SI C+ NW
Sbjct: 392 AKDSNYDVSSIGFIPLLSLCVFIVLFSIGFGPIPWMLMGEIFPPQIKGIASSIVCMANWF 451
Query: 406 SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
V + TKFF + + + FW++++++ LG F +VPETKGKT++EIQ+ LG
Sbjct: 452 FVFLATKFFSLLVSTIYLYNTFWLYTLVSVLGTFFVVFIVPETKGKTMEEIQLLLGA 508
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193596719|ref|XP_001950031.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 1 [Acyrthosiphon pisum] gi|328696681|ref|XP_003240096.1| PREDICTED: facilitated trehalose transporter Tret1-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 188/479 (39%), Positives = 279/479 (58%), Gaps = 66/479 (13%)
Query: 1 MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
MGT LGWT+PAG + G+Y F
Sbjct: 88 MGTTLGWTAPAGPMMENGQYGF-------------------------------------- 109
Query: 61 LLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGE 120
+T ++S+I S M LGA+ G PV+ +LV+ +GRK+ M++L +P+ ++
Sbjct: 110 ------QITVENVSWIASVMPLGAMLGCPVMASLVNKLGRKHLMIMLTIPTLFGWAMIIW 163
Query: 121 TSQVTVW----------------VLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQ 164
V VW V++ I++K G+ L + ++
Sbjct: 164 AKSV-VWICAGRFLTGFSSGSYSVIVPLYTSEIAEKEIRGT--LGTYFQLQVNAGILFTY 220
Query: 165 VIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEY 224
V+ +V+GLS+ CA++P+ ++ LM L+PESP F+L K V++A+ SL++FR
Sbjct: 221 VVGSY---LNVFGLSVACAIVPVIYICLMFLIPESPIFYLMKKNVEKAQLSLKYFRKPVV 277
Query: 225 DIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK 284
++ E+ MQ++L K ++VP+M+AF T AKRGL +GLGVM QQF G NAV+FY
Sbjct: 278 HVNQELNTMQSALAKTERERVPIMEAFQTTPAKRGLCLGLGVMVFQQFTGCNAVIFYATT 337
Query: 285 IFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYF 344
IF GSS+ N TII+G + +V+T+++T++VD+LGR+ILLL S V M + T +G +F
Sbjct: 338 IFNATGSSIGSNTSTIIIGIMAVVSTYVSTLVVDKLGRKILLLYSVVAMGICTFLIGGFF 397
Query: 345 YLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNW 404
Y K S D+S+IG++PL SLC+FII+FS+GFGPIPWML+GEIFP+QIKGIA S+ C+ NW
Sbjct: 398 YAKESHYDISSIGFIPLMSLCIFIILFSIGFGPIPWMLMGEIFPAQIKGIASSVVCMSNW 457
Query: 405 VSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
+ V +VTKFF + + + FW+F++ LG F VPETKGKT++EIQ LG +
Sbjct: 458 LFVFLVTKFFTLMVSAIYLYNTFWLFTLFGVLGTFFVVFFVPETKGKTMEEIQELLGAD 516
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|119855473|gb|ABM01870.1| facilitative hexose transporter 1 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 344 bits (882), Expect = 7e-92, Method: Compositional matrix adjust.
Identities = 200/490 (40%), Positives = 289/490 (58%), Gaps = 51/490 (10%)
Query: 1 MGTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
+GT+LGWTSP L + Y F V ++IGS MA+GA+ G + ++DT GRK+T+
Sbjct: 39 LGTVLGWTSPVLTSL-SDYYGFEVNVDSQAWIGSIMAIGAMVGGLPMSWMLDTFGRKSTI 97
Query: 61 LLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDI----RP 116
++L VPTV M+++ PS + R
Sbjct: 98 IILTVPTVAA--------------------------------WMMIIFAPSVTVICIARF 125
Query: 117 LLGETSQVTVWVLISTTNRRISDKCFVGS--DHLAILCPISISQSRRLAQVIKERKFEAS 174
+LG T+ V + IS+ G+ + + I I+ + L ++
Sbjct: 126 ILGFTTGAYA-VAVPLYTSEISENEIRGTLGTYFQLQLTIGITSAYILGSLLP------- 177
Query: 175 VYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234
++ ++++C +P+ ML++PE+P ++LKK RV +A+++LQWFRGS YD++ E+ ++
Sbjct: 178 IFWMTMVCGCIPVVLALAMLIIPETPTYYLKKFRVDEARKALQWFRGSHYDVEPELMLLK 237
Query: 235 NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTV--KIFKDAGSS 292
+L++ +++VP QAF T AKRGL++GLGVMF QQ + +++ Y+ IFK AGSS
Sbjct: 238 ANLDQMEAERVPFTQAFVTTPAKRGLVVGLGVMFFQQV-QVESMLSYSTPESIFKAAGSS 296
Query: 293 LNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352
++P+L TIIVG IM+V TW+AT+ +DR GRR LLL+SA IMA+ T +G YF L D
Sbjct: 297 MSPSLQTIIVGLIMVVMTWVATLAIDRAGRRPLLLISASIMAICTAILGVYFLLLEKTPD 356
Query: 353 VSN-IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVT 411
+ IG +P+ SL +FIIVFSLGFGPIPWM + EIFP QIKG A SIAC FNW SV +VT
Sbjct: 357 FAKTIGSVPIVSLSIFIIVFSLGFGPIPWMFMSEIFPPQIKGPACSIACFFNWFSVFMVT 416
Query: 412 KFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGNGESNENVM 471
KFFGD+ G +G FWIFS I+ G F LVPETKGK+++EIQ ELG +
Sbjct: 417 KFFGDLQSKFGSYGTFWIFSGISIAGTFFVLNLVPETKGKSMEEIQKELGATPQMTPEDR 476
Query: 472 VVVDTKDGKY 481
+ K K+
Sbjct: 477 MENGQKPAKF 486
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332019321|gb|EGI59828.1| Sugar transporter ERD6-like 7 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/461 (38%), Positives = 268/461 (58%), Gaps = 35/461 (7%)
Query: 4 ILGWTSPAGDRLI--AGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
+LGWTSPAG+ + A Y ++ ++ S+IGS LGA +G + D +GRK ML
Sbjct: 75 VLGWTSPAGENGVNLAKNYDIKISITEFSWIGSLATLGAGAMCIPIGIIADLIGRKTAML 134
Query: 62 LLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGET 121
++ VP T L I S+ L FG + G + + +IR LG
Sbjct: 135 IMVVP-FTIGWLLIIFSNSVLMFYFGRFITGLSGGAFCVAAPLYTAEIAEKEIRGTLG-- 191
Query: 122 SQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSII 181
+ +L + I + +I+ + LSII
Sbjct: 192 ------------------------SYFQLLLTVGILAAYVFGAIIENMR------TLSII 221
Query: 182 CALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKER 241
CA++P+ F G+ MPE+P ++LKK + A++SL FRG+EYD+++E+ + +LE+ R
Sbjct: 222 CAVMPLIFFGIFFFMPETPVYYLKKGNEEAARKSLIKFRGNEYDVEAELQAHREALEETR 281
Query: 242 SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTII 301
+ +PAAK+G +I G+M QQ G+N+++FY+ IF AG++++P++ TII
Sbjct: 282 RSGRSFFDSIKSPAAKKGFVIAYGLMLFQQMSGVNSIIFYSSDIFSRAGNAISPDIATII 341
Query: 302 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPL 361
VGT+ +V+ + T++VD+LGRRILLL+S +M L TL +G YFY + + NI W L
Sbjct: 342 VGTVQVVSVFFGTLVVDKLGRRILLLISITVMFLMTLLLGIYFYCLDHTTAFDNITWFAL 401
Query: 362 GSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL 421
LC F++VFS+GFGPIPWM++ EIF ++KGIA S ACLFNW+ +VTKF+ D+ +
Sbjct: 402 IPLCTFLVVFSVGFGPIPWMMMPEIFAPEVKGIAGSSACLFNWLMAFIVTKFYSDMKEAV 461
Query: 422 GGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
+G FWIFS+ +A+G +F Y LVPETKGKTLD+IQ EL G
Sbjct: 462 QSYGTFWIFSLFSAVGTLFVYFLVPETKGKTLDQIQRELNG 502
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|289742799|gb|ADD20147.1| solute carrier family 2 [Glossina morsitans morsitans] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 187/483 (38%), Positives = 274/483 (56%), Gaps = 67/483 (13%)
Query: 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML 61
GT+LGWTSPA +RLI GEY F
Sbjct: 29 GTLLGWTSPAQNRLIGGEYGF--------------------------------------- 49
Query: 62 LLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP----------- 110
V+ + S+IGS+M LGA F +G L++ +GRK TMLLL +P
Sbjct: 50 -----PVSTAAFSWIGSAMTLGAAFICIPIGFLINMIGRKLTMLLLVLPFTLGWALLIWA 104
Query: 111 -----SFDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQV 165
+ R +LG S V I+ K G+ L + I+
Sbjct: 105 QNVEMMYAARFILG-ISGGAFCVTAPMYTGEIAQKDIRGT--LGSFFQLMITAGILFIYA 161
Query: 166 IKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYD 225
I V+ +S++C ++P+ F + + MPESP + + K++ + A +S+QW RG +YD
Sbjct: 162 IGAG---LDVFAMSLVCGVIPLIFGAIFVFMPESPTYLVSKSKNESAIKSIQWLRGKDYD 218
Query: 226 IDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI 285
+ E+ +++ + E+ + + V + A P + L I LG+MF QQ GINAV+FY+ I
Sbjct: 219 YNPELEELKATEEQIKQNSVSVGTALLRPVTLKALAISLGLMFFQQLCGINAVIFYSTDI 278
Query: 286 FKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFY 345
FKDA + ++ NL TI+VG + ++ T+++ M+VD+LGRR+LLL SA++MALST+ MG YFY
Sbjct: 279 FKDAETGIDENLSTIVVGVMQVIATFVSVMVVDKLGRRLLLLASAIVMALSTVAMGVYFY 338
Query: 346 LK-NSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNW 404
+K N + V+N+GWLP+ +LCVFII+FS+GFGP+PW+++GE+F S IKG+A SIA NW
Sbjct: 339 MKDNDNASVANLGWLPVSALCVFIIMFSIGFGPVPWLMMGELFASDIKGVAGSIAGTSNW 398
Query: 405 VSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGNG 464
V +VTK F ++ LG FW+F+ I LGAVF ++ VPETKGK+L+EIQ L GN
Sbjct: 399 VLAFIVTKTFVNMKEALGSGQTFWLFAGITLLGAVFVFLFVPETKGKSLNEIQKLLEGNS 458
Query: 465 ESN 467
S
Sbjct: 459 NST 461
|
Source: Glossina morsitans morsitans Species: Glossina morsitans Genus: Glossina Family: Glossinidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322796559|gb|EFZ19033.1| hypothetical protein SINV_07455 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 320 bits (820), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 176/461 (38%), Positives = 262/461 (56%), Gaps = 35/461 (7%)
Query: 2 GTILGWTSPAGDRLI--AGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 59
G +LGW+SPAG + +Y + ++ S++GS LGA +G + D +GRK
Sbjct: 72 GMVLGWSSPAGKNGVNLQKDYNITMDATEFSWVGSLATLGAGVICIPIGVIADLIGRKTA 131
Query: 60 MLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLG 119
ML++ VP V L +SM + FG + G T + + +IR LG
Sbjct: 132 MLVMVVPFVVGWILIICSNSMIM-FYFGRFITGLGGGTFCVAAPLYTAEIAEKEIRGALG 190
Query: 120 ETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLS 179
+ ++ I I S L VI+ +++ LS
Sbjct: 191 --------------------------TYFQLMLTIGILISYILGAVIE------NMFTLS 218
Query: 180 IICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239
II A++P+ F + MPE+P ++LKKN + A+ SL RG++Y+I++E+ +MQ +LE+
Sbjct: 219 IISAVIPLIFFVAFIFMPETPVYYLKKNNQEAARNSLIKLRGNQYNIEAELQEMQEALEE 278
Query: 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCT 299
+ T A K+G +I G+M QQ G+NA++FY+ IF+ AGSS+ PN+ T
Sbjct: 279 TKRSGASFTDLIQTKAVKKGFVIAYGLMLFQQMSGVNAIIFYSSDIFERAGSSIEPNIAT 338
Query: 300 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359
IIVG + V+ + T+++DRLGRRILLL S ++M ++TL +G YFY + + +I W
Sbjct: 339 IIVGAVQAVSVFFGTLVIDRLGRRILLLASIIMMFVTTLILGVYFYCIENNTAFDDIKWF 398
Query: 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419
L LCVF+++FS GFGPIPWM++ EIF ++KG+A S ACLFNW+ V+TKF+ D+
Sbjct: 399 ALIPLCVFLVLFSFGFGPIPWMMMPEIFAPEVKGVAGSSACLFNWLMAFVITKFYTDMVA 458
Query: 420 LLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMEL 460
+ +G FWIF + +G VF Y LVPETKGKTLDEIQ EL
Sbjct: 459 AVEPYGTFWIFCLFCIIGTVFVYFLVPETKGKTLDEIQREL 499
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198466442|ref|XP_002135189.1| GA23919 [Drosophila pseudoobscura pseudoobscura] gi|198150603|gb|EDY73816.1| GA23919 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
|---|
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 185/474 (39%), Positives = 272/474 (57%), Gaps = 57/474 (12%)
Query: 3 TILGWTSPAGDRLIAGE--YPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 60
T+LGWTSPA +++ G Y F V+ + S++GSS+ LGA +G L+ +GRK TM
Sbjct: 99 TVLGWTSPAQPQIVDGGEGYDFPVSGTQFSWVGSSINLGAACVCIPIGFLISLIGRKLTM 158
Query: 61 LLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDT---VGRKNTMLLLAVPSF----- 112
L+L +P + +G +M + A P VG L + +G + P +
Sbjct: 159 LMLVLPFL-------VGWAMLIWA----PSVGFLYASRFILGLAGGAFCVTAPMYTGEIA 207
Query: 113 --DIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERK 170
DIR LG Q+ + + IL ++
Sbjct: 208 QKDIRGTLGSFFQLMI--------------------TMGILFVYAVGAG----------- 236
Query: 171 FEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEI 230
SV+ LS+IC ++PI F + MPESP + + K R + A +S+QW RG EYD EI
Sbjct: 237 --VSVFWLSVICGIIPIVFGVIFFFMPESPTYLVAKGRSESAIKSIQWLRGKEYDYAPEI 294
Query: 231 TDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAG 290
+++ + + R +KV L A + P ++ L I LG+MF QQ GINAV+FY+ KIF DA
Sbjct: 295 EELRETDREIRENKVNLFAALNRPVTRKALAISLGLMFFQQLCGINAVIFYSSKIFLDAN 354
Query: 291 SSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSG 350
+ TI++G + +V T+++T++VD+LGRRILLL S +MALST +G YF+L++
Sbjct: 355 IGIGSEWATIMIGIMQVVATFVSTLVVDKLGRRILLLASGSVMALSTTAIGVYFFLQDQD 414
Query: 351 -SDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLV 409
S V ++GWLP+ SLC+FI++FS+G+GP+PW+++GE+F + IKG A SIA NW+ V
Sbjct: 415 QSKVDDLGWLPVASLCIFILMFSIGYGPVPWLMMGELFATDIKGFAGSIAGTSNWLLAFV 474
Query: 410 VTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463
VTK F D+ LG G FW+F+ + LG F + VPETKGK+L+EIQ EL GN
Sbjct: 475 VTKTFDDLNDALGNGGTFWLFAGLTVLGVFFVFFAVPETKGKSLNEIQQELAGN 528
|
Source: Drosophila pseudoobscura pseudoobscura Species: Drosophila pseudoobscura Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 481 | ||||||
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.808 | 0.774 | 0.386 | 1.4e-76 | |
| UNIPROTKB|B0WC46 | 517 | Tret1 "Facilitated trehalose t | 0.592 | 0.551 | 0.447 | 1.4e-76 | |
| UNIPROTKB|B4HNS1 | 488 | Tret1-2 "Facilitated trehalose | 0.590 | 0.581 | 0.442 | 5.9e-76 | |
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.873 | 0.833 | 0.390 | 8.1e-76 | |
| UNIPROTKB|B4QBN3 | 488 | Tret1-2 "Facilitated trehalose | 0.590 | 0.581 | 0.439 | 3.2e-75 | |
| UNIPROTKB|Q7PIR5 | 793 | Tret1 "Facilitated trehalose t | 0.812 | 0.493 | 0.395 | 1.2e-74 | |
| UNIPROTKB|A9ZSY3 | 505 | Tret1 "Facilitated trehalose t | 0.825 | 0.786 | 0.377 | 9.7e-74 | |
| FB|FBgn0033644 | 488 | Tret1-2 "Trehalose transporter | 0.590 | 0.581 | 0.432 | 1.6e-73 | |
| UNIPROTKB|B3MG58 | 866 | Tret1 "Facilitated trehalose t | 0.592 | 0.329 | 0.430 | 4.1e-73 | |
| UNIPROTKB|Q17NV8 | 806 | Tret1 "Facilitated trehalose t | 0.812 | 0.485 | 0.390 | 9.6e-73 |
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 159/411 (38%), Positives = 240/411 (58%)
Query: 68 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVW 127
VT +IGS M L A+ G + G ++ +GR+NT+L A+P + + V +
Sbjct: 80 VTMDMAMWIGSIMPLSALIGGIIGGPCIEYIGRRNTILSTALPFLAGWLFIALATNVAM- 138
Query: 128 VLISTTNRRISDKCF-VGSDHLAILCPISISQSRR-----LAQVIKERK----FEASVY- 176
+L+ R I C V S L + SI R L V F A +Y
Sbjct: 139 ILVG---RSICGFCVGVASLSLPVYLGESIQPEVRGSLGLLPTVFGNSGILMCFTAGMYL 195
Query: 177 ---GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM 233
L+++ A +PI F+ LM L+PE+P++++ K ++K+A++SLQW RG DI E+ +
Sbjct: 196 AWRNLALLGACIPIIFLILMFLIPETPRWYISKGKIKEARKSLQWLRGKTADISEELDSI 255
Query: 234 QNS-LEKER-SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGS 291
Q +E ER + + L++ F K + I LG+MF QQF GINAV+FYTV+IFKD+GS
Sbjct: 256 QKMHIESERIATEGALIELFRKNHIKP-VFISLGLMFFQQFSGINAVIFYTVQIFKDSGS 314
Query: 292 SLNPNLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS 351
+++ NL A MI+DRLGR++LL +S+++M ++ T G +FY+K
Sbjct: 315 TVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTFFYVKEL-M 373
Query: 352 DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVT 411
DV+ GW+PL SL V++I FS GFGPIPW+++GEI P +I+G A S+A FNW VVT
Sbjct: 374 DVTAFGWIPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVT 433
Query: 412 KFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
K + D+ L +G +G FW+F + A+ +F I VPET+G++L+EI+ G
Sbjct: 434 KTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFAG 484
|
|
| UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
Score = 697 (250.4 bits), Expect = 1.4e-76, Sum P(2) = 1.4e-76
Identities = 128/286 (44%), Positives = 193/286 (67%)
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS- 236
L+ + A LP+ F+ LM L+PE+P++++ + R +A+++LQW RG + D+D E+ + S
Sbjct: 214 LAFLGATLPVPFLILMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGIIKSH 273
Query: 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPN 296
+ ER M + LLI LG+MF QQ GINAV+FYTV+IF+DAGS+++ N
Sbjct: 274 QDAERHASQSAMLDLLKKTNLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGSTIDEN 333
Query: 297 LCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356
LC AT+++DRLGR++LL +S + M ++ +T+G +FY+KN+G DVS+I
Sbjct: 334 LCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHI 393
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416
GWLPL S +F++ FSLGFGPIPW+++GEI P +I+G A S+A FNW VVTK F D
Sbjct: 394 GWLPLASFVIFVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFAD 453
Query: 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
+ +G HGAFW+F + +G VF + VPET+GK+L++I+ ++ G
Sbjct: 454 IIASIGTHGAFWMFGSVCVVGLVFVIMYVPETQGKSLEDIERKMCG 499
|
|
| UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 677 (243.4 bits), Expect = 5.9e-76, Sum P(2) = 5.9e-76
Identities = 127/287 (44%), Positives = 194/287 (67%)
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNS 236
L+ + A LP+ F+ LM+++PE+P++ + + + ++A+++L+W RG E D++ E+ D MQ+
Sbjct: 186 LAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQ 245
Query: 237 LEKE-RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNP 295
E + ++ + ++ F K L I LG+MF QQF GINAV+FYTV+IFKDAGS+++
Sbjct: 246 AEADSQATRNTCLELFKRINLKP-LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDS 304
Query: 296 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355
NLC +++DRLGR+ILL VS + M L+ +G +FY K G DVS+
Sbjct: 305 NLCTIIVGIVNFFATFMGIILIDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVSH 364
Query: 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG 415
+GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+ FNW VVTK F
Sbjct: 365 LGWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQ 424
Query: 416 DVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
D+T+ +G HGAFW+F V+ +G F I VPET+GK+L+EI+ ++ G
Sbjct: 425 DLTVAMGPHGAFWLFGVVCIVGLFFVIIYVPETRGKSLEEIERKMMG 471
|
|
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
Identities = 174/446 (39%), Positives = 256/446 (57%)
Query: 37 ALGAVFGSPVVG-----NLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVV 91
A+ GS VVG V +NT + VTE + S++G M L + G
Sbjct: 47 AIAVSMGSMVVGFASAYTSPALVSMQNTTITSF--KVTEQEASWVGGIMPLAGLAGGIAG 104
Query: 92 GNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVWVLISTTNRRISDKCF-VGSDHLAI 150
G ++ +GRKNT+L AVP F + LL + ++W++++ R +S C + S L +
Sbjct: 105 GPFIEYLGRKNTILATAVP-FIVAWLLIAFAN-SIWMVLA--GRALSGFCVGIASLSLPV 160
Query: 151 LCPISISQSRRLAQVIKERKFE---------ASVY----GLSIICALLPIFFVGLMLLMP 197
++ R + F A Y GL+ I ++LPI F+ L LL+P
Sbjct: 161 YLGETVQPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILPIPFMVLTLLIP 220
Query: 198 ESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS-LEKERSDKVPLMQAFSTPAA 256
E+P++ + + R ++A+++LQW RG + D++ E+ + S E ER + +
Sbjct: 221 ETPRWFVTRGREERARKALQWLRGKKADVEPELKGIVKSHCEAERHASQNAIFDLMKRSN 280
Query: 257 KRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCXXXXXXXXXXXXXXATMI 316
+ LLI LG+MF QQ GINAV+FYTV IFKDAGS+++ NLC AT++
Sbjct: 281 LKPLLIALGLMFFQQLSGINAVIFYTVSIFKDAGSTIDENLCTIIVGVVNFGATFFATVL 340
Query: 317 VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376
+DRLGR+ILL +S V M ++ LT+G +FY KNSG+DVSNIGWLPL S +++I FS G G
Sbjct: 341 IDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGWLPLASFVIYVIGFSSGVG 400
Query: 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAAL 436
PIPW+++GEI P +I+G A S+A FNW +VTK F D+ +G HGAFW F VI +
Sbjct: 401 PIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFGVICLI 460
Query: 437 GAVFTYILVPETKGKTLDEIQMELGG 462
G F VPET+GK+L+EI+ ++ G
Sbjct: 461 GLFFVIFFVPETQGKSLEEIERKMMG 486
|
|
| UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 676 (243.0 bits), Expect = 3.2e-75, Sum P(2) = 3.2e-75
Identities = 126/287 (43%), Positives = 194/287 (67%)
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNS 236
L+ + A LP+ F+ LM+++PE+P++ + + + ++A+++L+W RG E D++ E+ D MQ+
Sbjct: 186 LAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKDLMQSQ 245
Query: 237 LEKE-RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNP 295
E + ++ + ++ F K L I LG+MF QQF GINAV+FYTV+IFKDAGS+++
Sbjct: 246 AEADSQARRNTCLELFKRINLKP-LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDS 304
Query: 296 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355
NLC +++DRLGR+ILL +S + M L+ +G +FY K G DVS+
Sbjct: 305 NLCTIIVGIVNFFATFMGILLIDRLGRKILLYISDIAMILTLSILGGFFYCKAHGPDVSH 364
Query: 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG 415
+GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+ FNW VVTK F
Sbjct: 365 LGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQ 424
Query: 416 DVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
D+T+ +G HGAFW+F V+ +G F I VPET+GK+L+EI+ ++ G
Sbjct: 425 DLTVAMGAHGAFWLFGVVCIVGLFFVIICVPETRGKSLEEIERKMMG 471
|
|
| UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 162/410 (39%), Positives = 244/410 (59%)
Query: 68 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVW 127
VT+ S++G M L + G + G +++ +GRKNT+L A P L+G + V +
Sbjct: 370 VTDQSGSWVGGIMPLAGLAGGILGGPMIEYLGRKNTILATATPFIISWLLIGCATHVAM- 428
Query: 128 VLISTTNRRISDKCF-VGSDHLAILCPISISQSRRLAQVIKERKFE---------ASVY- 176
VL+ R +S C + S L + ++ R + F A Y
Sbjct: 429 VLVG---RALSGLCVGIASLSLPVYLGETVQPEVRGTLGLLPTAFGNIGILLCFVAGKYL 485
Query: 177 ---GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM 233
GL+ + A LPI F+ LM L+PE+P++++ +NR +A+++LQW RG + D++ E+ +
Sbjct: 486 DWSGLAFLGAALPIPFLLLMFLIPETPRWYVSRNREDRARKALQWLRGRKADVEPELKGI 545
Query: 234 QNS-LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSS 292
S + ER M A + LLI LG+MF QQ GINAV+FYTV+IF+ AGS+
Sbjct: 546 SKSHQDAERHASSSAMLDLLNKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQSAGST 605
Query: 293 LNPNLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352
++ LC AT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+G D
Sbjct: 606 IDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDD 665
Query: 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK 412
VS IGWLPL + VF++ FSLGFGPIPW+++GEI P +I+G A S+A FNW VVTK
Sbjct: 666 VSEIGWLPLAAFVVFVVGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTK 725
Query: 413 FFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
F D+T +G HGAFW+F I +G +F + VPET+GK+L++I+ ++ G
Sbjct: 726 TFADITASIGNHGAFWMFGSICIVGLLFVIVYVPETQGKSLEDIERKMMG 775
|
|
| UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)] | Back alignment and assigned GO terms |
|---|
Score = 669 (240.6 bits), Expect = 9.7e-74, Sum P(2) = 9.7e-74
Identities = 158/419 (37%), Positives = 237/419 (56%)
Query: 68 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVW 127
+T+ +++++G M L A+ G V G L++ +GRK T++ AVP F I +L + V
Sbjct: 85 ITKEEITWVGGLMPLAALVGGIVGGPLIEYLGRKKTIMGTAVP-FTIGWMLIANAINVVM 143
Query: 128 VLISTTNRRISDKCFVGSDHLAILCPI--SISQSRRLAQVIKERKFE------ASVYG-- 177
V R I C VG LA I +I R A + F A + G
Sbjct: 144 VF---AGRVICGVC-VGIVSLAFPVYIGETIQPEVRGALGLLPTAFGNTGILLAFLVGSY 199
Query: 178 -----LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD 232
L+ A +P+ F LM+L PE+P++++ K RV++A++SL+W RG +I+ E+ D
Sbjct: 200 LDWSNLAFFGAAIPVPFFLLMILTPETPRWYVSKARVQEARKSLRWLRGKNVNIEKEMRD 259
Query: 233 MQNS-LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGS 291
+ S E +R+ Q FS ++I LG+M QQ GINAV+FY IF+ +GS
Sbjct: 260 LTISQTESDRTGGNAFKQLFSKRYLP-AVMISLGLMLFQQLTGINAVIFYAASIFQMSGS 318
Query: 292 SLNPNLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS 351
S++ NL ATM++DRLGR++LL +S+V M + L +G YFYLK +
Sbjct: 319 SVDENLASIIIGVVNFISTFIATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQNHI 378
Query: 352 DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVT 411
DV+ GWLPL L ++++ FS+GFGPIPW+++GEI PS+I+G A S+A FNW +VT
Sbjct: 379 DVTAYGWLPLACLVIYVLGFSIGFGPIPWLMLGEILPSKIRGTAASLATGFNWTCTFIVT 438
Query: 412 KFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGNGESNENV 470
K F ++ + HG W+F+VI G +F VPETKGK+L+EI+M+L N+
Sbjct: 439 KTFQNIIDAIYMHGTLWLFAVICIGGLLFVIFFVPETKGKSLEEIEMKLTSGSRRVRNI 497
|
|
| FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.6e-73, Sum P(2) = 1.6e-73
Identities = 124/287 (43%), Positives = 192/287 (66%)
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNS 236
L+ + A LP+ F+ LM+++PE+P++ + + + ++A+++L+W RG E D++ E+ + MQ+
Sbjct: 186 LAFLGAALPVPFLILMIIIPETPRWFVNRGQEERARKALKWLRGKEADVEPELKELMQSQ 245
Query: 237 LEKER-SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNP 295
+ +R + + ++ F K L I LG+MF QQF GINAV+FYTV+IFKDAGS+++
Sbjct: 246 ADADRQATQNTCLELFKRNNLKP-LSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDS 304
Query: 296 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355
NL +++DRLGR+ILL VS + M ++ +G +FY K G DVS+
Sbjct: 305 NLSTIIVGVVNFFATFMGIILIDRLGRKILLYVSDIAMIVTLSILGGFFYCKAHGPDVSH 364
Query: 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG 415
+GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+ FNW VVTK F
Sbjct: 365 LGWLPLTCFVIYILGFSLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQ 424
Query: 416 DVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
D+T+ +G HGAFW+F I +G F I VPET+GK+L+EI+ ++ G
Sbjct: 425 DLTVAMGAHGAFWLFGAICIVGLFFVIIFVPETRGKSLEEIERKMMG 471
|
|
| UNIPROTKB|B3MG58 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-73, Sum P(2) = 4.1e-73
Identities = 123/286 (43%), Positives = 186/286 (65%)
Query: 178 LSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNS 236
L+ + A LP+ F+ LM L+PE+P++ + + R ++A+++L W RG E D++ E+ M++
Sbjct: 563 LAFLGAALPVPFLVLMFLIPETPRWFVSRGREERARKALSWLRGKEADVEPELKGLMRSQ 622
Query: 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPN 296
+ +R M + + L I LG+MF QQ GINAV+FYTV IFKDAGS+++ N
Sbjct: 623 ADADRQGTQNTMLELLKRSNFKPLSISLGLMFFQQLSGINAVIFYTVSIFKDAGSTIDGN 682
Query: 297 LCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356
+C AT+++DR GR+ILL VS + M ++ +G +FY K G DVS++
Sbjct: 683 VCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKAHGPDVSHL 742
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416
GWLPL ++I+ FSLGFGPIPW+++GEI P++I+G A S+A FNW VVTK F D
Sbjct: 743 GWLPLSCFVIYILGFSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQD 802
Query: 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
+ ++G HGAFW+F I +G F + VPET+GKTL++I+ ++ G
Sbjct: 803 MIDVMGAHGAFWLFGAICFIGLFFVILYVPETQGKTLEDIERKMMG 848
|
|
| UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
|---|
Score = 735 (263.8 bits), Expect = 9.6e-73, P = 9.6e-73
Identities = 160/410 (39%), Positives = 241/410 (58%)
Query: 68 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVW 127
VT+ S++G M L + G + G L++ +GRKNT+L A P F I LL +
Sbjct: 383 VTDQSGSWVGGIMPLAGLAGGILGGPLIEYLGRKNTILATATP-FIISWLLIACATHVAM 441
Query: 128 VLI-------STTNRRISDKCFVGSD-------HLAILCPISISQSRRLAQVIKERKFEA 173
VL+ S +S ++G L +L P + L + + +
Sbjct: 442 VLVGRALSGFSVGVASLSLPVYLGETVQPEVRGTLGLL-PTAFGNIGILLCFVAGKYMDW 500
Query: 174 SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM 233
S GL+ + A LPI F+ LM L+PE+P++++ + R +A+++LQW RG + D+D E+ +
Sbjct: 501 S--GLAFLGAALPIPFLLLMFLIPETPRWYVSRGRDDRARKALQWLRGKKADVDPELKGI 558
Query: 234 QNS-LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSS 292
S + ER M A + LLI LG+MF QQ GINAV+FYTV+IF+DAGS+
Sbjct: 559 IKSHQDAERHASQSAMLDLMKKANLKPLLISLGLMFFQQLSGINAVIFYTVQIFQDAGST 618
Query: 293 LNPNLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352
++ NLC ATM++DRLGR++LL +S V M ++ +T+G +FY+KNSG D
Sbjct: 619 IDENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQD 678
Query: 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK 412
VS +GWLPL + ++++ FSLGFGPIPW+++GEI P +I+G A S+A FNW +VTK
Sbjct: 679 VSQVGWLPLAAFVIYVLGFSLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTK 738
Query: 413 FFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
F D+ +G HG FW+F I +G F VPET+GK+L++I+ ++ G
Sbjct: 739 TFADIINAIGTHGTFWMFGSICVIGLAFVIFYVPETQGKSLEDIERKMMG 788
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P58354 | GTR8_BOVIN | No assigned EC number | 0.3052 | 0.7817 | 0.7866 | yes | N/A |
| P93051 | ERDL7_ARATH | No assigned EC number | 0.3202 | 0.8586 | 0.8920 | yes | N/A |
| Q9JIF3 | GTR8_MOUSE | No assigned EC number | 0.3193 | 0.7359 | 0.7421 | yes | N/A |
| Q9NY64 | GTR8_HUMAN | No assigned EC number | 0.3202 | 0.7255 | 0.7316 | yes | N/A |
| Q9JJZ1 | GTR8_RAT | No assigned EC number | 0.3135 | 0.7359 | 0.7405 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 481 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 1e-55 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 5e-51 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 6e-44 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 2e-12 | |
| TIGR00883 | 394 | TIGR00883, 2A0106, metabolite-proton symporter | 5e-07 | |
| TIGR00887 | 502 | TIGR00887, 2A0109, phosphate:H+ symporter | 8e-07 | |
| cd06174 | 352 | cd06174, MFS, The Major Facilitator Superfamily (M | 8e-06 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 1e-04 | |
| pfam07690 | 346 | pfam07690, MFS_1, Major Facilitator Superfamily | 0.003 | |
| COG3104 | 498 | COG3104, PTR2, Dipeptide/tripeptide permease [Amin | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 191 bits (488), Expect = 1e-55
Identities = 123/423 (29%), Positives = 203/423 (47%), Gaps = 52/423 (12%)
Query: 71 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTML----LLAVPSFDIRPLLGETSQVTV 126
I S ++G + GS G L D GRK ++L L + + L G +
Sbjct: 46 VLSGLIVSIFSVGCLIGSLFAGKLGDRFGRKKSLLIGNVLFVIGAL----LQGFAKGKSF 101
Query: 127 WVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSI------ 180
++LI R+ VG +++L P+ IS+ K R S+Y L I
Sbjct: 102 YMLIVG---RVIVGLGVGG--ISVLVPMYISEIAPK----KLRGALGSLYQLGITFGILV 152
Query: 181 ----------------------ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQW 218
+ + I + +L +PESP++ + K ++++A+ L
Sbjct: 153 AAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIGLLFLPESPRWLVLKGKLEEARAVLAK 212
Query: 219 FRGSEYDIDSEITDMQNSLEKERSDKVPLM-QAFSTPAAKRGLLIGLGVMFIQQFGGINA 277
RG D+D EI + ++SLE+ + + F ++ LL+G+ + QQ GINA
Sbjct: 213 LRGVS-DVDQEIQEEKDSLERSVEAEKASWLELFRGKTVRQRLLMGVMLQIFQQLTGINA 271
Query: 278 VVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST 337
+ +Y+ IF+ G S + L TIIVG + V T+IA +VDR GRR LLL+ A MA+
Sbjct: 272 IFYYSPTIFETLGLS-DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICF 330
Query: 338 LTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397
L +G + + + +FI F+LG+GP+PW++V E+FP ++ A++
Sbjct: 331 LVLGVALLGVAKSKGAGIVA---IVFILLFIAFFALGWGPVPWVIVSELFPLGVRPKAMA 387
Query: 398 IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQ 457
IA NW++ ++ F +T +GG F +F+ + L +F + VPETKG+TL+EI
Sbjct: 388 IATAANWLANFLIGFLFPIITGAIGG-YVFLVFAGLLVLFILFVFFFVPETKGRTLEEID 446
Query: 458 MEL 460
Sbjct: 447 ELF 449
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 5e-51
Identities = 97/283 (34%), Positives = 160/283 (56%), Gaps = 9/283 (3%)
Query: 181 ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240
+ + + +PESP++ + K RV++A++SL RG+ D E+ D ++ +
Sbjct: 201 LQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTS-GEDKELLDELELIDIK 259
Query: 241 RSDKVPLMQAF------STPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAG-SSL 293
RS + +Q ST +R L +G+ + + QQF GINA+++Y+ IF++AG S+
Sbjct: 260 RSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTD 319
Query: 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353
+ L +IIVG + T++A +VDR GRR LLL+ A MA+ +G +GS
Sbjct: 320 HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSK 379
Query: 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKF 413
S G + + + +FI F++G+GP+PW++V EIFP ++ +SIA NW++ +V
Sbjct: 380 S-SGNVAIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFL 438
Query: 414 FGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEI 456
F + +G G F F + LG +F Y +PETKG+TL+EI
Sbjct: 439 FPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (407), Expect = 6e-44
Identities = 90/285 (31%), Positives = 155/285 (54%), Gaps = 34/285 (11%)
Query: 187 IFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVP 246
+ F+ L+ +PE+P++ + + + +QA+ L+ G+ + ++++SL+ R
Sbjct: 205 LLFLMLLYFVPETPRYLMSRGKQEQAEGILRKIMGNT-LATQALQEIKHSLDHGRKTGGK 263
Query: 247 LMQAFSTPAAKRGLLIGLGVMFI-------QQFGGINAVVFYTVKIFKDAGSSLNPNLC- 298
L L+ G+GV+ I QQF GIN V++Y +IFK G+S + L
Sbjct: 264 L------------LMFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIALLQ 311
Query: 299 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358
TIIVG I + T +A M VD+ GR+ L ++ A+ MA+ ++G FY + G
Sbjct: 312 TIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGI------- 364
Query: 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG--D 416
+ L S+ ++ F++ +GP+ W+L+ EIFP+ I+G A++IA W++ V+ F D
Sbjct: 365 VALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMD 424
Query: 417 VTLLLGGHG----AFWIFSVIAALGAVFTYILVPETKGKTLDEIQ 457
L H ++WI+ + L A+F + VPETKGKTL+E++
Sbjct: 425 KNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEME 469
|
Length = 479 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 41/189 (21%), Positives = 73/189 (38%), Gaps = 15/189 (7%)
Query: 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAG--SSLNPNLCTIIVGTIMMVTTWIATMIV 317
LL+ L + F G ++ Y ++ S+ L + G ++ + ++
Sbjct: 176 LLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGLLS 235
Query: 318 DRLGRR-ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376
DRLGRR +LLL+ ++ AL L + L L L +L + F
Sbjct: 236 DRLGRRRLLLLIGLLLAALGLLLLALAPSL-----------ALLLVALLLLGFGLGFAFP 284
Query: 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAAL 436
+ L E+ P + +G A + F + + G + G G F I + +A L
Sbjct: 285 ALL-TLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALL 343
Query: 437 GAVFTYILV 445
A+ +L
Sbjct: 344 AALLLLLLP 352
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233168 TIGR00883, 2A0106, metabolite-proton symporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 5e-07
Identities = 33/169 (19%), Positives = 72/169 (42%), Gaps = 23/169 (13%)
Query: 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNL 297
EK + + P+ + + ++ L+GLG++ FY + + + L
Sbjct: 201 EKHKKKRGPIAETLTKH--RKPFLLGLGLVIAT------TTTFYLITTYLPTYLTQTLGL 252
Query: 298 -------CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSG 350
++ + +T ++ + DR+GRR +L++ V+ AL + + L +SG
Sbjct: 253 SANSALLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPL--LMALLDSG 310
Query: 351 SDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399
S L + ++ + GP+ L E+FP++++ S+A
Sbjct: 311 SF-----TLFFFLVLGMALIGGMYTGPMGSFL-PELFPTEVRYTGASLA 353
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc [Transport and binding proteins, Unknown substrate]. Length = 394 |
| >gnl|CDD|129965 TIGR00887, 2A0109, phosphate:H+ symporter | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 8e-07
Identities = 44/165 (26%), Positives = 78/165 (47%), Gaps = 31/165 (18%)
Query: 311 WIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIV 370
W+ +VD +GR+ + L+ I+ + +G+ + + +S G+L + L F
Sbjct: 353 WVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAY------NHLSTHGFLAIYVLAQF--- 403
Query: 371 FSLGFGP--IPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGA-- 426
F+ FGP +++ GE+FP++ + A I+ ++ F L L HG
Sbjct: 404 FA-NFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGF----LYLAQHGDPT 458
Query: 427 ------------FWIFSVIAALGAVFTYILVPETKGKTLDEIQME 459
IF++ LG +FT +L+PETKGK+L+E+ E
Sbjct: 459 KGYPTGIWMGHVLEIFALFMFLGILFT-LLIPETKGKSLEELSGE 502
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Anions]. Length = 502 |
| >gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 8e-06
Identities = 35/187 (18%), Positives = 68/187 (36%), Gaps = 12/187 (6%)
Query: 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDR 319
LL+ F+ + S+ L + + +A + DR
Sbjct: 1 LLLLFLGFFLSGLDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDR 60
Query: 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIP 379
GRR +LL+ ++ AL +L + + S++ L +G + + P
Sbjct: 61 FGRRRVLLLGLLLFALGSLLLAF----------ASSLWLLLVGR--FLLGLGGGALYPAA 108
Query: 380 WMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV 439
L+ E FP + +G A+ + + L+ G + LG F I +++ L A+
Sbjct: 109 AALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLAL 168
Query: 440 FTYILVP 446
L+
Sbjct: 169 LLLFLLR 175
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated. Length = 352 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 90/419 (21%), Positives = 174/419 (41%), Gaps = 89/419 (21%)
Query: 78 SSMALGAVFGSPVVGNLVDTVGRKN----TMLLLAV--------PSFDI----RPLLGET 121
S +G + GS V G L D GRK + L+ AV P++ + R L+G
Sbjct: 134 SCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVG-M 192
Query: 122 SQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKE---------RKFE 172
+WV N F+ AI I L V+ R +
Sbjct: 193 GIGGIWVQAVVLNTE-----FLPKKQRAI-VGTLIQVFFSLGLVLLPLVAYFIPDWRWLQ 246
Query: 173 ASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYD---IDSE 229
+V + + LL +FV PESP++ + + R+++A + LQ R ++ + + +E
Sbjct: 247 LAVSLPTFLFFLL-SWFV------PESPRWLISQGRIEEALKILQ--RIAKINGKKLPAE 297
Query: 230 ITDMQNSLEKERSDKVP---LMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF 286
+ + SLEK+ S + F TP ++ L + + F A +Y + +
Sbjct: 298 VLSL--SLEKDLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWF------TTAFSYYGLVLD 349
Query: 287 -KDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG---- 341
+ G ++ +L I G + + I +++DRLGRR + S ++ ++ L +
Sbjct: 350 LGNLGGNIYLDL--FISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLLFVPV 407
Query: 342 YYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACL 401
++L+ + + + G F +V+ + E++P+ ++ + V +
Sbjct: 408 DLYFLRTALAVLGK-----FGITSAFQMVY---------LYTAELYPTVVRNLGVGVC-- 451
Query: 402 FNWVSVL--VVTKFFGDVTLLLGGHGAFW---IFSVIAALGAVFTYILVPETKGKTLDE 455
+ ++ + +++ F + LG F +F +A L + T + +PETKG L E
Sbjct: 452 -STMARVGSIISPFL----VYLGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 34/166 (20%), Positives = 65/166 (39%), Gaps = 16/166 (9%)
Query: 301 IVGTIMMVTTWIATMI----VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356
++ T + +A + DR GRR +LL+ ++ AL L + + S++
Sbjct: 36 LLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLF----------ASSL 85
Query: 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416
L + V + P L+ + FP + +G A+ + + + G
Sbjct: 86 WLLLVLR--VLQGLGGGALFPAAAALIADWFPPEERGRALGLLSAGFGLGAALGPLLGGL 143
Query: 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGG 462
+ L G AF I +++A L AV +L+P ++ E
Sbjct: 144 LASLFGWRAAFLILAILALLAAVLAALLLPRPPPESKRPKPAEEAP 189
|
Length = 346 |
| >gnl|CDD|225646 COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 246 PLMQAFSTPAAKRGLLIGLGVMFIQQFG--GINAV-VFYTVKIFKDAGSSLNPNLCTIIV 302
M+ F P RGL + V ++F G+ A+ + Y D G + T +
Sbjct: 12 LEMKFFGQP---RGLYLIFFVELWERFSYYGMRAILILYLYYQLGD-GLGFDETHATGLF 67
Query: 303 GT---IMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358
++ +T I + DR LG R +++ A++MA+ L + S VS G
Sbjct: 68 SAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAI--------SSVSGPGG 119
Query: 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388
L +G IIV + F P L+GE++P
Sbjct: 120 LYIGL--ALIIVGTGLFKPNISSLLGELYP 147
|
Length = 498 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 100.0 | |
| KOG0252|consensus | 538 | 100.0 | ||
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.98 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.97 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.97 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.97 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.97 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.97 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.97 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.97 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.95 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.95 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| KOG2532|consensus | 466 | 99.95 | ||
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.95 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.95 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.94 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.94 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.94 | |
| KOG2533|consensus | 495 | 99.94 | ||
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.94 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.94 | |
| KOG1330|consensus | 493 | 99.94 | ||
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.94 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.94 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.94 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.93 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.92 | |
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.92 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.92 | |
| KOG2504|consensus | 509 | 99.91 | ||
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.9 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.9 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.9 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.89 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.89 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.89 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.89 | |
| KOG2615|consensus | 451 | 99.88 | ||
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.88 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.88 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.87 | |
| KOG3764|consensus | 464 | 99.87 | ||
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.87 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.86 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.84 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.83 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.83 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.82 | |
| KOG4686|consensus | 459 | 99.81 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.81 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.81 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.8 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.79 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.79 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.79 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.77 | |
| PRK11462 | 460 | putative transporter; Provisional | 99.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.73 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.67 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.63 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.63 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.63 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.62 | |
| KOG2563|consensus | 480 | 99.59 | ||
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.59 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.59 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.58 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.57 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.56 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.55 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.55 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.55 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.55 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.54 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.54 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.53 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.53 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.53 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.53 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.53 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.52 | |
| KOG1330|consensus | 493 | 99.51 | ||
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.51 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.5 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.5 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.49 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.49 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.49 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.48 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.48 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.47 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.47 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.47 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.46 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.46 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.46 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.45 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.45 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.45 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.44 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.43 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.43 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.43 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.43 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.42 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.42 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.41 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.41 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.4 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.4 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.39 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.39 | |
| KOG3626|consensus | 735 | 99.38 | ||
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.35 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.35 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.35 | |
| KOG2615|consensus | 451 | 99.35 | ||
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.35 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.34 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.33 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.33 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.33 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.32 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.32 | |
| KOG2325|consensus | 488 | 99.32 | ||
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.31 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.3 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.3 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.3 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.29 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.28 | |
| KOG2816|consensus | 463 | 99.28 | ||
| PRK09952 | 438 | shikimate transporter; Provisional | 99.27 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.26 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.26 | |
| KOG3762|consensus | 618 | 99.24 | ||
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.24 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.23 | |
| KOG3764|consensus | 464 | 99.23 | ||
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.23 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.22 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.22 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.21 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.21 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.2 | |
| KOG2532|consensus | 466 | 99.18 | ||
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.16 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.15 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.13 | |
| KOG0569|consensus | 485 | 99.13 | ||
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.12 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.1 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.1 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.08 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.08 | |
| KOG0254|consensus | 513 | 99.07 | ||
| KOG2504|consensus | 509 | 99.06 | ||
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.06 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.04 | |
| KOG0255|consensus | 521 | 99.03 | ||
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.02 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.02 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 98.98 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 98.95 | |
| KOG2533|consensus | 495 | 98.95 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.92 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.88 | |
| KOG3098|consensus | 461 | 98.8 | ||
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.79 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.76 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.74 | |
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 98.73 | |
| KOG4332|consensus | 454 | 98.71 | ||
| KOG0252|consensus | 538 | 98.68 | ||
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.67 | |
| KOG2325|consensus | 488 | 98.64 | ||
| KOG0253|consensus | 528 | 98.64 | ||
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.62 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.57 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 98.55 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.53 | |
| KOG2816|consensus | 463 | 98.51 | ||
| PRK11462 | 460 | putative transporter; Provisional | 98.5 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.5 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.49 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.49 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.4 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.38 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.37 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.36 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.21 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.12 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.1 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.1 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 98.04 | |
| KOG3810|consensus | 433 | 98.03 | ||
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.02 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.97 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 97.94 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.87 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 97.8 | |
| KOG2563|consensus | 480 | 97.78 | ||
| KOG3574|consensus | 510 | 97.76 | ||
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 97.75 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.72 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 97.66 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.66 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.66 | |
| KOG0637|consensus | 498 | 97.64 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 97.63 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.6 | |
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.58 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.49 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 97.48 | |
| KOG3626|consensus | 735 | 97.18 | ||
| KOG1237|consensus | 571 | 97.13 | ||
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 97.12 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 96.95 | |
| KOG4686|consensus | 459 | 96.85 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.78 | |
| KOG0637|consensus | 498 | 96.73 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.34 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.3 | |
| KOG1479|consensus | 406 | 96.2 | ||
| KOG1479|consensus | 406 | 96.11 | ||
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 95.94 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.93 | |
| KOG3762|consensus | 618 | 95.89 | ||
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 95.76 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 95.72 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 95.71 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 95.42 | |
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.29 | |
| KOG1237|consensus | 571 | 94.95 | ||
| KOG3098|consensus | 461 | 94.75 | ||
| KOG4332|consensus | 454 | 94.61 | ||
| KOG3574|consensus | 510 | 94.05 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 93.27 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.43 | |
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 90.62 | |
| KOG3880|consensus | 409 | 84.55 | ||
| PF11947 | 153 | DUF3464: Protein of unknown function (DUF3464); In | 80.85 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=339.12 Aligned_cols=424 Identities=31% Similarity=0.471 Sum_probs=353.3
Q ss_pred ccccccccccccccccCC-----CCcc--cCch----hhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHH
Q psy7924 2 GTILGWTSPAGDRLIAGE-----YPFL--VTES----DLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTE 70 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~-----~~~~--~~~~----~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~ 70 (481)
|+..+..++..+.+.+-. +.++ ++++ ..+.+.+++.+|.++|+++.++++||+|||..+.++.++..++
T Consensus 24 Gy~~~~iNap~~~i~~f~n~t~~~r~g~~~s~~~~~~lwS~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~ 103 (485)
T KOG0569|consen 24 GYNIGVVNAPQELIKSFINETLIERYGLPLSDSTLDLLWSLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLA 103 (485)
T ss_pred hhhheecCchHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 555555555544443311 0233 4444 3577889999999999999999999999999999999998888
Q ss_pred hHHHHHH---HHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccc
Q psy7924 71 SDLSFIG---SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDK 140 (481)
Q Consensus 71 ~~~~~~~---~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (481)
.++..++ +++. ++ +++|++. |+..|......+. .+.||......+.+.
T Consensus 104 ~~~~~~s~~~~~~e--~l----i~GR~i~--Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~-------------- 161 (485)
T KOG0569|consen 104 ALLMGLSKSAPSFE--ML----ILGRLIV--GLACGLSTGLVPMYLTEISPKNLRGALGTLLQIGV-------------- 161 (485)
T ss_pred HHHHHHHHHhhhHH--HH----HHHHHHH--HHHhHHHHHHHHHHHhhcChhhhccHHHHHHHHHH--------------
Confidence 8877665 5677 78 9999999 9999888777777 789999999999999
Q ss_pred cccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhh-cCcHHHHHHHHHHH
Q psy7924 141 CFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLK-KNRVKQAKESLQWF 219 (481)
Q Consensus 141 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~-~~~~~~a~~~~~~~ 219 (481)
.+|.+++..++.+.. .+....|++.+.+..+++++..+...++||||||+.. |+++++|++.+++.
T Consensus 162 ------~~g~ll~~~~~l~~i-------lGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~Ll~~k~~~~~A~~sl~~y 228 (485)
T KOG0569|consen 162 ------VIGILLGQVLGLPSL-------LGTEDLWPYLLAFPLIPALLQLALLPFLPESPKYLLIKKGDEEEARKALKFY 228 (485)
T ss_pred ------HHHHHHHHHHccHHh-------cCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHcCCHHHHHHHHHHH
Confidence 999999988874321 2256679999999999999999999999999999998 89999999999999
Q ss_pred hCCCccchHHHHHHHHhhhhh--ccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chh
Q psy7924 220 RGSEYDIDSEITDMQNSLEKE--RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPN 296 (481)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~ 296 (481)
++.+++.++..+..++.++++ +.++.+++++++++..++...+.+.+....++.+.+...+|...++.+.|++. ++.
T Consensus 229 ~G~~~~~~~~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~ 308 (485)
T KOG0569|consen 229 RGKEDVEAEIEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQ 308 (485)
T ss_pred hCCCcchhHHHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHH
Confidence 998755444433333332222 23566899999999999999999999999999999999999999999999998 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccC
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (481)
..+...++...+.++++.++.||+|||+.++.+..++.+..+.+.......+... ....+..+...+++...++.+.+
T Consensus 309 ~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~~--~~~~y~~i~~~~~~~~~f~~G~g 386 (485)
T KOG0569|consen 309 YANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSFG--SWLSYLCIAAIFLFIISFAIGPG 386 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHhhhcCCC
Confidence 7888899999999999999999999999999999999998888876554443221 11223456777888889999999
Q ss_pred chhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q psy7924 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEI 456 (481)
Q Consensus 377 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
|++|.+.+|++|++.|+.+.++.....++..++....+..+.+..|. ..|.++.+.+++..+..++.+||||+|+..|+
T Consensus 387 pi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPETkgr~~~eI 465 (485)
T KOG0569|consen 387 PIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPETKGRTPYEI 465 (485)
T ss_pred chhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCcccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999887 78889999999999999999999999999998
Q ss_pred HHHhcCC
Q psy7924 457 QMELGGN 463 (481)
Q Consensus 457 ~~~~~~~ 463 (481)
.++.+++
T Consensus 466 ~~~~~~~ 472 (485)
T KOG0569|consen 466 IEELEKR 472 (485)
T ss_pred HHHHHhC
Confidence 8887766
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=309.12 Aligned_cols=424 Identities=32% Similarity=0.483 Sum_probs=342.8
Q ss_pred cccccccccccccCCCC--cccCc--hhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHh
Q psy7924 5 LGWTSPAGDRLIAGEYP--FLVTE--SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSM 80 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~--~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~ 80 (481)
.|+.+++.+.+.+.... ...+. .+.+|+.+++.++..+++++.|+++|++|||++++++.+++.++++++++++|.
T Consensus 63 ~g~~s~~~~~~~~~~~~~~~~~~~~~~~~s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~ 142 (513)
T KOG0254|consen 63 IGGISGALDFLQRFASLYDLSTGEYSVRQGLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALAPSW 142 (513)
T ss_pred cccchhhHHHHHhcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 67888888888773321 22222 355999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCP 153 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 153 (481)
. ++ +++|++. |+|.|......+. ++.||...+..+... .+|..++
T Consensus 143 ~--~l----~~GR~l~--G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~--------------------~~Gi~~~ 194 (513)
T KOG0254|consen 143 Y--QL----IVGRILT--GLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLFI--------------------TIGILLG 194 (513)
T ss_pred H--HH----HHHHHHh--ccchhhhhhcchhhHhhcCChhhhHHHHHHHHHHH--------------------HHHHHHH
Confidence 9 99 9999999 9999888877776 679999999999999 9999888
Q ss_pred hhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhC-CCccchHHHHH
Q psy7924 154 ISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRG-SEYDIDSEITD 232 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~ 232 (481)
..++... ... ..+||..+.+..+++++..+..+++||||+|+.++++.+++++.++++++ ++.+.+.+.++
T Consensus 195 ~~~~~~~------~~~--~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~~~~~ 266 (513)
T KOG0254|consen 195 YCINYGT------SKV--YAGWRIPLGLALIPAVILALGMLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEVELEL 266 (513)
T ss_pred HHHhhhh------ccC--CccHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHHHHHH
Confidence 7776211 111 15899999999999999888877899999999999999999999999998 33444444443
Q ss_pred HHHhh--hhhccCcc-chHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHHH
Q psy7924 233 MQNSL--EKERSDKV-PLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVT 309 (481)
Q Consensus 233 ~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 309 (481)
.+... +....+.. ...++++ |..+++..+.+.+..++++.+++...+|.+.+++..|.+.+......+.++...++
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~~~~~~~~~~v~~~~ 345 (513)
T KOG0254|consen 267 LKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDTFLASIILGVVNFLG 345 (513)
T ss_pred HHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCchHHHHHHHHHHHHHH
Confidence 33111 11111222 3455555 66788888899999999999999999999999999888764466777778888999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc
Q psy7924 310 TWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS-DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388 (481)
Q Consensus 310 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 388 (481)
..+..++.||+|||+.++.+...+.++.++++.......... ......+..+...+++...++.+..+++|.+.+|.+|
T Consensus 346 t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sEifp 425 (513)
T KOG0254|consen 346 TLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSEIFP 425 (513)
T ss_pred HHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHhcccccchhhhhhccCc
Confidence 999999999999999999999999999999888765544321 1134456777778888888999999999999999999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHH-HHHHhccCCCCCCHHHHHHHhcCCCC
Q psy7924 389 SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV-FTYILVPETKGKTLDEIQMELGGNGE 465 (481)
Q Consensus 389 ~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (481)
.+.|+++.++....+++.+.+.........+..+....|..+..++.+... ..+++.||||+++.+|.++..++...
T Consensus 426 ~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~~~~~ 503 (513)
T KOG0254|consen 426 LRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFEEGIK 503 (513)
T ss_pred HhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHHcCCc
Confidence 999999999999999999988877776666665545677777777777777 67788999999999998887665443
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=312.15 Aligned_cols=399 Identities=17% Similarity=0.191 Sum_probs=288.5
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
....++++|.+.+ +++++..+.+++.+++.++.+++++++|+++||+|||++++++.++.++++++++++++++ .
T Consensus 183 ~~~is~ilp~i~~---~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~--~ 257 (742)
T TIGR01299 183 VFVVGFVLPSAEK---DLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFVQGYG--F 257 (742)
T ss_pred HHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHH--H
Confidence 3445677888888 9999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ +++|++. |++.+...+.... .+.|+...+....+. .+|.++++.++
T Consensus 258 l----lv~R~l~--G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~--------------------~iG~ila~~la 311 (742)
T TIGR01299 258 F----LFCRLLS--GFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFW--------------------MIGGIYAAAMA 311 (742)
T ss_pred H----HHHHHHH--HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 9 9999999 9998877665555 578899988888888 78877777655
Q ss_pred hhhhhhhHhh------ccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccc----h
Q psy7924 158 QSRRLAQVIK------ERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDI----D 227 (481)
Q Consensus 158 ~~~~~~~~~~------~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~----~ 227 (481)
.... ...+ ......+||+++++.+++.++.++..+++||||+|+..+++.+++.+.++++.+.+... .
T Consensus 312 ~~il--~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~lPESPrwL~~~gr~~eA~~iL~~i~~~n~~~~~~~~ 389 (742)
T TIGR01299 312 WAII--PHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFMPESPRFFLENGKHDEAWMILKLIHDTNMRAKGHPE 389 (742)
T ss_pred HHHH--HhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHCCCHHHHHHHHHHHhcCCCCCcCchh
Confidence 3211 1111 11123579999999998888887777789999999999999999999999987754321 1
Q ss_pred HHH--HHHHHhh------hhhccC------------------ccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHh
Q psy7924 228 SEI--TDMQNSL------EKERSD------------------KVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFY 281 (481)
Q Consensus 228 ~~~--~~~~~~~------~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (481)
+.. +..+... +.++.. ..+++++|+. .++++.++....+++..+. ++.+..|
T Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf~~-~~~~~tl~l~~~wf~~~~~-yygl~~w 467 (742)
T TIGR01299 390 KVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCFNP-EVREITIKLMGVWFTLSFG-YYGLSVW 467 (742)
T ss_pred HHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHcCc-cHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 100 0010000 000000 0134555654 4677777777777766665 4555566
Q ss_pred hHHHhhhc------------------------------------------CC-----C----------------------
Q psy7924 282 TVKIFKDA------------------------------------------GS-----S---------------------- 292 (481)
Q Consensus 282 ~~~~~~~~------------------------------------------g~-----~---------------------- 292 (481)
.|.++.+. |+ .
T Consensus 468 ~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (742)
T TIGR01299 468 FPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDVTSSNTFFK 547 (742)
T ss_pred HHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeeccccchhhh
Confidence 66553221 00 0
Q ss_pred ------------------------------------------C-----chhHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Q psy7924 293 ------------------------------------------L-----NPNLCTIIVGTIMMVTTWIATMIVDRLGRRIL 325 (481)
Q Consensus 293 ------------------------------------------~-----~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 325 (481)
. .......+..++.+++.++.++++||+|||++
T Consensus 548 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~ 627 (742)
T TIGR01299 548 NCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLMDKIGRLRM 627 (742)
T ss_pred ccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 0 00123455668889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHH
Q psy7924 326 LLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWV 405 (481)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 405 (481)
+..+.++.+++.+++++. .+....++..++++++.+.. .+..+++++|++|++.|++++|+.+..+++
T Consensus 628 l~~~~~lsai~~ll~~~~-----------~s~~~ll~~~~l~g~~~~~~-~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rl 695 (742)
T TIGR01299 628 LAGSMVLSCISCFFLSFG-----------NSESAMIALLCLFGGLSIAA-WNALDVLTVELYPSDKRATAFGFLNALCKA 695 (742)
T ss_pred HHHHHHHHHHHHHHHHHH-----------ccHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence 999988888887776652 12223333334444443333 345568999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy7924 406 SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKT 452 (481)
Q Consensus 406 g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (481)
|++++|.+.+.+.+. +...++.+.+++.++++++. .++|||+++.
T Consensus 696 Gaiigp~i~g~L~~~-~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 696 AAVLGILIFGSFVGI-TKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHh-hhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 999999999887764 44566766666666655544 4569998764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-38 Score=299.89 Aligned_cols=421 Identities=25% Similarity=0.388 Sum_probs=295.9
Q ss_pred ccccccccccccccccC-----CCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH
Q psy7924 2 GTILGWTSPAGDRLIAG-----EYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI 76 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 76 (481)
|++.++.++..|.+++. ..+++.++.+.+++.+++.++..++++++|+++||+|||++++++.+++.++.+.+++
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~ 104 (479)
T PRK10077 25 GYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAW 104 (479)
T ss_pred CcccceehHhHHHHHHHhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh
Confidence 56677777777777661 0133888999999999999999999999999999999999999999999999888876
Q ss_pred H------------HHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccc
Q psy7924 77 G------------SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRI 137 (481)
Q Consensus 77 ~------------~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~ 137 (481)
+ +.+. .+ +++|+++ |++.|...+.... +++|+++.+..+.+.
T Consensus 105 ~~~~~~~~~~~~~~~~~--~l----~~~R~l~--G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~----------- 165 (479)
T PRK10077 105 PEFGFTSIGPDNTGYVP--EF----VIYRIIG--GIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAI----------- 165 (479)
T ss_pred hccccccccccchhHHH--HH----HHHHHHH--hhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHH-----------
Confidence 3 1234 56 8999999 9999988776665 678999999998888
Q ss_pred ccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHH
Q psy7924 138 SDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQ 217 (481)
Q Consensus 138 ~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~ 217 (481)
.+|..+++.++...... .........+||+.|++.+++.++..+..+++||+|+|+..+++.+++++..+
T Consensus 166 ---------~~G~~~~~~~~~~~~~~-~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l~~s~~~l~~~~~~~~~~~~~~ 235 (479)
T PRK10077 166 ---------IFGQLVVYFVNYFIARS-GDASWLNTDGWRYMFASEAIPALLFLMLLYFVPETPRYLMSRGKQEQAEGILR 235 (479)
T ss_pred ---------HHHHHHHHHHHHHHhcc-CcccccccCChHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHcCCHHHHHHHHH
Confidence 88888776654211000 00111134689999999988888877766789999999988888888877777
Q ss_pred HHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCc-hh
Q psy7924 218 WFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN-PN 296 (481)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~ 296 (481)
+..+.+.. ++..++..+...+++. ..+..+.. ........+......+..+++...++.|.+.++.|.+.+ ..
T Consensus 236 ~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~ 309 (479)
T PRK10077 236 KIMGNTLA-TQALQEIKHSLDHGRK---TGGKLLMF--GVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGASTDIAL 309 (479)
T ss_pred HHcCChhH-HHHHHHHHHHHHHhhh---hhhhhcch--hHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCCchHH
Confidence 66543321 1111111111110110 00111111 111122222233333444455566778888888888763 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccC
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (481)
......++..+++.++.++++||+|||+.+..+.++.+++.+.+...... ...........+.++.+++....
T Consensus 310 ~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 382 (479)
T PRK10077 310 LQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAFAMSWG 382 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHhcccc
Confidence 56666778889999999999999999999999999888887776543210 11112233334445455555555
Q ss_pred chhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH------HhhcCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT------LLLGGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 377 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
+..+.+++|.+|++.|+++.|+.+..++++.++++.+.+.+. +..++...|.++++++++..++.+++.||+|+
T Consensus 383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 462 (479)
T PRK10077 383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKG 462 (479)
T ss_pred chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCCC
Confidence 667789999999999999999999999999999877776444 46778888888888888877777778899999
Q ss_pred CCHHHHHHHhcCCC
Q psy7924 451 KTLDEIQMELGGNG 464 (481)
Q Consensus 451 ~~~~~~~~~~~~~~ 464 (481)
++.+|.+++.+++.
T Consensus 463 ~~~~~~~~~~~~~~ 476 (479)
T PRK10077 463 KTLEEMEALWEPET 476 (479)
T ss_pred CCHHHHHHHHhhcc
Confidence 98888776654443
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=307.00 Aligned_cols=413 Identities=18% Similarity=0.155 Sum_probs=278.5
Q ss_pred ccccccccccccccccCC--CCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHH
Q psy7924 2 GTILGWTSPAGDRLIAGE--YPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSS 79 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~ 79 (481)
|++.+..+..+|.+..+. .+.+.+..+.+++.+.+.++..+++++.|+++||+|||+++.++.++..+++++++++++
T Consensus 29 g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~ 108 (502)
T TIGR00887 29 SYDLFCISLVTKMLGYVYYHGKGPLPSSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSPG 108 (502)
T ss_pred HHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHccC
Confidence 344445556666655410 123456678899999999999999999999999999999999999999999999888765
Q ss_pred ------hHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccc
Q psy7924 80 ------MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSD 146 (481)
Q Consensus 80 ------~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (481)
+. .+ +++|++. |++.+...+..+. +++|++..+......
T Consensus 109 ~~~~~~~~--~~----~~~r~l~--G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~-------------------- 160 (502)
T TIGR00887 109 SSPKSVMA--TL----CFWRFWL--GVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQ-------------------- 160 (502)
T ss_pred cccchHHH--HH----HHHHHHH--HHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHH--------------------
Confidence 55 77 9999999 9999987776665 789999999998888
Q ss_pred cchhhhhhhhhhhhhhhhHhhc----------------cchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHH
Q psy7924 147 HLAILCPISISQSRRLAQVIKE----------------RKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVK 210 (481)
Q Consensus 147 ~~G~~~~~~~~~~~~~~~~~~~----------------~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~ 210 (481)
.+|..+++.+...... .... .....+||+++.+.++++++..+..+++||||+|+..++|.+
T Consensus 161 ~~g~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~lpESpr~l~~~~~~~ 238 (502)
T TIGR00887 161 GFGILAGAIVALIVLA--GFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLTIPETPRYTADVAKDV 238 (502)
T ss_pred HHHHHHHHHHHHHHHH--HhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhCcch
Confidence 8888777766532110 0000 011247999999999988888777788999999999888764
Q ss_pred -HHHHHHHHHhCCCcc-chHHHHHHHHhhhhhccCccchHHHhcCcc---hhhhHHHHHHHHHHHHhhhhhhhhHhhHHH
Q psy7924 211 -QAKESLQWFRGSEYD-IDSEITDMQNSLEKERSDKVPLMQAFSTPA---AKRGLLIGLGVMFIQQFGGINAVVFYTVKI 285 (481)
Q Consensus 211 -~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (481)
++.+.+++..+.+.+ ..++.++.++ +++..+.+++++++++. .++..+.....++.... .++....+.|.+
T Consensus 239 ~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~y~~~~~~p~i 314 (502)
T TIGR00887 239 EQAASDMSAVLQVKIEAEPDEVEKAST---AVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFLLDI-AFYGVNLNQKVI 314 (502)
T ss_pred HHHHHHHHHHhccccccCcccccchhc---cccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HHHccccccHHH
Confidence 467667666543221 1111111111 11111235677775421 22222222222222222 233445557777
Q ss_pred hhhcCCCCc-hh-----------H-HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy7924 286 FKDAGSSLN-PN-----------L-CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 286 ~~~~g~~~~-~~-----------~-~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (481)
.++.|++.. .+ . ......++.+++.++.++++||+|||+.++.+..+..++...+.......
T Consensus 315 ~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~----- 389 (502)
T TIGR00887 315 LSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL----- 389 (502)
T ss_pred HHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc-----
Confidence 777777642 11 0 12333455677889999999999999999888877777766655432100
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh----------c
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL----------G 422 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~----------g 422 (481)
.. ............+++.+..+..+.+.+|.+|++.|+++.|+.+..++++++++|.+.+.+.+.. +
T Consensus 390 --~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 466 (502)
T TIGR00887 390 --ST-HGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIW 466 (502)
T ss_pred --ch-hHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccccccccccc
Confidence 01 1111222222233445566677788899999999999999999999999999999999888742 3
Q ss_pred CChhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Q psy7924 423 GHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQ 457 (481)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 457 (481)
+...+.++++++++..+. .+++|||++++.+|.+
T Consensus 467 ~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~ 500 (502)
T TIGR00887 467 MGHVLEIFALFMFLGILF-TLLIPETKGKSLEELS 500 (502)
T ss_pred chHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhh
Confidence 345677777777766554 4677999999877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=337.62 Aligned_cols=395 Identities=30% Similarity=0.493 Sum_probs=309.4
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH---HhHHhHhhhhhHHHHhhccccccce
Q psy7924 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS---SMALGAVFGSPVVGNLVDTVGRKNT 103 (481)
Q Consensus 27 ~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~g~~~~~r~~~~~G~~~~ 103 (481)
.+.+++.+...+|..+|+++.|+++||+|||+++.++.++..+++++.++++ +++ .+ .++|++. |++.|
T Consensus 46 ~~~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~--~~----~~~R~~~--G~~~g 117 (451)
T PF00083_consen 46 LLSSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPSYNNFW--ML----LIGRFLI--GFGIG 117 (451)
T ss_pred HHHHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccccccccc--cc----ccccccc--ccccc
Confidence 4678999999999999999999999999999999999999999999999999 888 99 9999999 99999
Q ss_pred eeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHH
Q psy7924 104 MLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVY 176 (481)
Q Consensus 104 ~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~ 176 (481)
...+..+. +++|++.....+.+. .+|.+++..+.... ........||
T Consensus 118 ~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~--------------------~~G~~~~~~~~~~~------~~~~~~~~Wr 171 (451)
T PF00083_consen 118 GAYVVSPIYISEIAPPKHRGFLSSLFQLFW--------------------ALGILLASLIGYIV------SYYSDNWGWR 171 (451)
T ss_pred cccccccccccccccccccccccccccccc--------------------cccccccccccccc------cccccccccc
Confidence 88877777 788999999999998 88888887776321 1111235699
Q ss_pred HHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcch
Q psy7924 177 GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAA 256 (481)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
..+.+.++++++..+...++||||+|+..|+|+|||++.++++++.+...++ .++..++.++.++.+.++++++++++.
T Consensus 172 ~~~~~~~~~~l~~~~~~~~~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~ 250 (451)
T PF00083_consen 172 ILLIFGAIPSLLVLLLRFFLPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE-IEEIKAEKKESQESKASWRDLFRNKKY 250 (451)
T ss_pred ccccccccccccccccccccccccceeccccccccccccccccccccccccc-ccccccccccccccceeeeeccccccc
Confidence 9999999999888888888999999999999999999999997665332222 222222222222223567778887666
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy7924 257 KRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS 336 (481)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 336 (481)
+++.+..+.+....+..++....+|.+.+.++.+.+.+ ........+...++.++..++.||+|||+.++.+...++++
T Consensus 251 ~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~ 329 (451)
T PF00083_consen 251 RKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS-FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAIC 329 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccc
Confidence 67777777777777777777788888888888777655 34455566777788888889999999999999998888888
Q ss_pred HHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHH
Q psy7924 337 TLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416 (481)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~ 416 (481)
.+.++.......+.+ .......+....+....++.+..+..+.+.+|.+|++.|+++.++....+++++++.+.+...
T Consensus 330 ~~~~~~~~~~~~~~~--~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~ 407 (451)
T PF00083_consen 330 SLILGIIFFLGVSSS--SWWSILSIVFLALFFAFFSLGWGPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPY 407 (451)
T ss_pred ccccccccccccccc--cccccccceeeeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 777751111111110 011233334444455566667788888999999999999999999999999999999999888
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHH
Q psy7924 417 VTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQME 459 (481)
Q Consensus 417 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (481)
+.+..+....+.++++++.+..++.++++|||++++.+|.+++
T Consensus 408 ~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~ 450 (451)
T PF00083_consen 408 LFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEM 450 (451)
T ss_pred ccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhh
Confidence 8887775577888888888888888899999999999998765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=291.09 Aligned_cols=382 Identities=19% Similarity=0.283 Sum_probs=277.5
Q ss_pred ccccccccCCCCcccC---chhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhh
Q psy7924 10 PAGDRLIAGEYPFLVT---ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVF 86 (481)
Q Consensus 10 ~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (481)
+..|.+.+ |+|++ ..+.+++.+++.++..+++++.|+++||+|||+++.++.++..++.++++++++++ .+
T Consensus 110 ~~~~~i~~---e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~--~~- 183 (505)
T TIGR00898 110 TFSSTIVT---EWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYT--VF- 183 (505)
T ss_pred cccccEEE---EecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHHcccHH--HH-
Confidence 46678888 99999 89999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
++.|++. |++.+...+.... +++|+...+....+. .+|.++++.++.
T Consensus 184 ---~~~r~l~--G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~~- 237 (505)
T TIGR00898 184 ---LVFRLLV--GMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFF--------------------SLGLVLLPLVAY- 237 (505)
T ss_pred ---HHHHHHH--HhhccchHHHHHHHhheecChhhhHHHHHHHHHHH--------------------HHHHHHHHHHHH-
Confidence 9999999 9998886655544 677899988888888 888888777762
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccch-HHHHHHH-Hhh
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDID-SEITDMQ-NSL 237 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~-~~~ 237 (481)
...+||+.+++.+++.++..+..+++||+|+|+..+++.+++.+.+++..+.+.... ++..+.+ ++.
T Consensus 238 -----------~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~ 306 (505)
T TIGR00898 238 -----------FIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKD 306 (505)
T ss_pred -----------HhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhhh
Confidence 112499999999998888777777899999999999999999988887754332211 1111111 111
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIV 317 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~ 317 (481)
+++++++.+.++++++|..++..+.....++.... ..+..+......+. +........++..+++.++.+++.
T Consensus 307 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~ 379 (505)
T TIGR00898 307 LSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFTTAF-----SYYGLVLDLGNLGG--NIYLDLFISGLVELPAKLITLLLI 379 (505)
T ss_pred hhhccCCCcHHHHhCChHHHHHHHHHHHHHHHHHH-----HHHHHhccccccCC--ChHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112235678899988666655544443332211 11122222233333 344555666788899999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHH
Q psy7924 318 DRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397 (481)
Q Consensus 318 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 397 (481)
||+|||+.+..+.++.+++.+.+.... ....+.......+..++....+ +..+.+.+|.+|++.|+++.|
T Consensus 380 dr~grr~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~e~~p~~~r~~~~g 449 (505)
T TIGR00898 380 DRLGRRYTMAASLLLAGVALLLLLFVP---------VDLYFLRTALAVLGKFGITSAF-QMVYLYTAELYPTVVRNLGVG 449 (505)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHcC---------CCchHHHHHHHHHHHHHHHHHH-HHHHHHhcccccHHHHhhhHh
Confidence 999999999998888887776665421 1111222222333333333323 445688899999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q psy7924 398 IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLD 454 (481)
Q Consensus 398 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (481)
+.+..+++|++++|.+.+ .+..++..++.+++++.++.+++. +++||+++++++
T Consensus 450 ~~~~~~~ig~~i~p~i~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~ 503 (505)
T TIGR00898 450 VCSTMARVGSIISPFLVY--LGEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLP 503 (505)
T ss_pred HHHHHHHHHHHHHhHHHH--HHHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCC
Confidence 999999999999999988 444556677777777776665554 567999887653
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=278.10 Aligned_cols=414 Identities=29% Similarity=0.446 Sum_probs=291.8
Q ss_pred ccccccccccccccCCCCcccC--------chhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHH
Q psy7924 4 ILGWTSPAGDRLIAGEYPFLVT--------ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSF 75 (481)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~--------~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~ 75 (481)
+.+...+.+|.+.. +++.+ ..+.+++.+++.++..+++++.|+++||+|||+++..+.+++.++.+++.
T Consensus 43 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~ 119 (481)
T TIGR00879 43 DTGVIGGALALPAF---EFKFTSANSDSYSSSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMG 119 (481)
T ss_pred ccchhhhhhhcHHH---HHhcCCcccCCCChhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455666676666 55555 89999999999999999999999999999999999999999999999986
Q ss_pred HHHHhH-HhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccccccccc
Q psy7924 76 IGSSMA-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDH 147 (481)
Q Consensus 76 ~~~~~~-~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (481)
+..+.. ...+ +++|++. |++.+...+.... +++|++..++.+.+. .
T Consensus 120 ~~~~~~~~~~~----~~~r~l~--G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~ 173 (481)
T TIGR00879 120 LAAFALSVEML----IVGRVLL--GIGVGIASALVPMYLSEIAPKALRGALTSLYQLAI--------------------T 173 (481)
T ss_pred HhccccchHHH----HHHHHHH--HhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHH--------------------H
Confidence 654322 1167 8999999 9988877665443 678999999998888 8
Q ss_pred chhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccch
Q psy7924 148 LAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDID 227 (481)
Q Consensus 148 ~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 227 (481)
+|..+++.+... ........+||+.|++.++..++..+..+++||+|+++..+++.+++.+..++..+.+.+..
T Consensus 174 ~G~~~~~~~~~~------~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
T TIGR00879 174 FGILVAYGFGSG------KVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRWLVGKGRVEEARKSLARLRGTSGEDK 247 (481)
T ss_pred HHHHHHHHHHHH------hhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcH
Confidence 888888777610 01112456899999998777777766667899999998888777776666665544332222
Q ss_pred HHHHHH---HHhhhhh-ccCccchHHHhcCcc-hhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHH
Q psy7924 228 SEITDM---QNSLEKE-RSDKVPLMQAFSTPA-AKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTII 301 (481)
Q Consensus 228 ~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~ 301 (481)
+..+.. +...+.+ +..+....+.++..+ ..++.+....+.............++.|++.++.|++. ........
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 327 (481)
T TIGR00879 248 ELLDELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSII 327 (481)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHH
Confidence 111110 0100111 111112333333211 12334444444444444445566778888888888877 44567777
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhh
Q psy7924 302 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWM 381 (481)
Q Consensus 302 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
..++.+++.++.++++||+|||+.+..+..+.+++.+.+...........+ ............++..+++.+..+....
T Consensus 328 ~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (481)
T TIGR00879 328 VGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSS-KSSGNVAIVFILLFIAFFAMGWGPVPWV 406 (481)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCCcc-cchhHHHHHHHHHHHHHHHccccCeehh
Confidence 888889999999999999999999988887777776666532221111000 0012333344445555566666667667
Q ss_pred hhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCH
Q psy7924 382 LVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTL 453 (481)
Q Consensus 382 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (481)
+..|.+|++.|+++.++.+...+++++++|.+.+.+.+..+++..|++.++++++.+++.+++.||+++++.
T Consensus 407 ~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~ 478 (481)
T TIGR00879 407 IVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTL 478 (481)
T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCCh
Confidence 889999999999999999999999999999999999999999999998888888888877777788776654
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=281.20 Aligned_cols=382 Identities=15% Similarity=0.126 Sum_probs=242.8
Q ss_pred cccccccccccccccCCCCcccCchh-hHH-----HHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH
Q psy7924 3 TILGWTSPAGDRLIAGEYPFLVTESD-LSF-----IGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI 76 (481)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 76 (481)
++++..+...|.+.+ +++.+.++ .++ +.++.++++.+++++.|+++||+|||+++.++.++++++++++++
T Consensus 30 ~d~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~ 106 (490)
T PRK10642 30 FDFGVYGFVAYALGK---VFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL 106 (490)
T ss_pred HHHHHHHHHHHHHHH---hhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence 344445556677777 77544322 222 257788999999999999999999999999999999999999999
Q ss_pred HHHhHHhH--------hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccc
Q psy7924 77 GSSMALGA--------VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKC 141 (481)
Q Consensus 77 ~~~~~~~~--------l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (481)
++++. . + ++.|+++ |++.|...+.... +++|++..+....+.
T Consensus 107 ~~~~~--~~g~~a~~~l----~~~R~l~--G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~--------------- 163 (490)
T PRK10642 107 IPSYA--TIGIWAPILL----LLCKMAQ--GFSVGGEYTGASIFVAEYSPDRKRGFMGSWLDFGS--------------- 163 (490)
T ss_pred cccHH--HHHHHHHHHH----HHHHHHH--HhHhHhhHHHHHHHHHHhCCCCCCcHHHHHHHHHH---------------
Confidence 99986 4 5 8999999 9999887766555 688999988888777
Q ss_pred ccccccchhhhhhhhhhhhhhhhHhh-ccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHh
Q psy7924 142 FVGSDHLAILCPISISQSRRLAQVIK-ERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFR 220 (481)
Q Consensus 142 ~~~~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~ 220 (481)
.+|..++..+..... .... ......+||+.|++.+++.++..++...+||+|+|...+++.++..+
T Consensus 164 -----~~G~~lg~~~~~~~~--~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~~esp~~~~~~~~~~~~~~------ 230 (490)
T PRK10642 164 -----IAGFVLGAGVVVLIS--TIVGEANFLDWGWRIPFFIALPLGIIGLYLRHALEETPAFQQHVDKLEQGDR------ 230 (490)
T ss_pred -----HHHHHHHHHHHHHHH--HhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcCCCChhHHHHHHhhhhhcc------
Confidence 677766665442110 0000 11124689999999887776655555679999988543222111000
Q ss_pred CCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHH
Q psy7924 221 GSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLC 298 (481)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~ 298 (481)
+ ..+++++.++++.+++ .++.........+..... ++....+.|.+. +..|++. .....
T Consensus 231 --------------~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~l~~~~g~s~~~~~~~ 291 (490)
T PRK10642 231 --------------E--GLQDGPKVSFKEIATK--HWRSLLTCIGLVIATNVT-YYMLLTYMPSYLSHNLHYSEDHGVLI 291 (490)
T ss_pred --------------c--cccccccCCHHHHHHH--hHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 0 0001122345666653 223333333332322222 334444556555 4567775 33445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCch
Q psy7924 299 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPI 378 (481)
Q Consensus 299 ~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
.....++..++.++.|+++||+|||+.+..+.+...+......... . ............+.+++.+...+..
T Consensus 292 ~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~~~~~~~~g~~~~~~~g~~ 363 (490)
T PRK10642 292 IIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--N------SNVIGLIFAGLLMLAVILNCFTGVM 363 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--h------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666677889999999999999999988777654443332221111 0 1111222333333333333333333
Q ss_pred hhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy7924 379 PWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAVFTYILVPETKGKT 452 (481)
Q Consensus 379 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (481)
..+.+|.+|++.|+++.|+.+....+++.++|.+.+.+.+..+ ++.++++..+.+++..+ ..++.||++++.
T Consensus 364 -~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~-~~~~~pes~~~~ 436 (490)
T PRK10642 364 -ASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLI-TGVTMKETANRP 436 (490)
T ss_pred -HHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-HHHHhccccCCC
Confidence 3677799999999999998777788888999999998887654 45555544444444444 345568876543
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=245.35 Aligned_cols=384 Identities=18% Similarity=0.172 Sum_probs=280.6
Q ss_pred cccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhH
Q psy7924 11 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPV 90 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 90 (481)
+.|.+.. .++.+..|..++....+.|..+++..+|.++|++|||+.+.+..+...+...+.+.++|+. .+ .
T Consensus 100 i~~~l~~---~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~spnf~--~L----~ 170 (528)
T KOG0253|consen 100 ILPALDE---VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGASPNFA--SL----C 170 (528)
T ss_pred HHHHHHh---hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcCCCCee--hh----h
Confidence 3455556 7889999999999999999999999999999999999999999999999999999999999 99 9
Q ss_pred HHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Q psy7924 91 VGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA 163 (481)
Q Consensus 91 ~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 163 (481)
+.|.+. |+|.|. .+.... ..+|...+-.. ..+ .+|.+....+.+...
T Consensus 171 ~f~~l~--~~g~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~w--------------------aig~v~ea~law~vm-- 224 (528)
T KOG0253|consen 171 VFRALW--GFGVGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFW--------------------AIGQVFEALLAWGVM-- 224 (528)
T ss_pred HHHHHH--hccCCC-ccHhHHHHHHhccCcCCCcchhHH-HHH--------------------HHHHHHHHHHHHHHH--
Confidence 999999 777776 333333 44555555444 555 778777777764221
Q ss_pred hHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccc-----------h-HHHH
Q psy7924 164 QVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDI-----------D-SEIT 231 (481)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~-----------~-~~~~ 231 (481)
...||||.....+.+..+.+.+.+.+|||||++..++++++|.+.++++.+.|... + .|.+
T Consensus 225 -------~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~~~~~e~e 297 (528)
T KOG0253|consen 225 -------SNFGWRYLLFTSSTPLMFAARFLVWVYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSAIDRQEQE 297 (528)
T ss_pred -------HhhhHHHHHHHHHhHHHHHHHHHhhcccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeehhhhhhhh
Confidence 56799999999998888888888889999999999999999999999886543211 0 0000
Q ss_pred --HHHHhh-hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcC------------------
Q psy7924 232 --DMQNSL-EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAG------------------ 290 (481)
Q Consensus 232 --~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g------------------ 290 (481)
+.++.+ +..++.+....+++. |++++..+.....++...+..+..+. ....+.+...
T Consensus 298 ~~~~~~~~~~a~ke~rg~~~nLls-p~lrkttlllw~iwfgnafsyyg~VL-lttelfqsgd~c~~~~r~~p~e~e~~~~ 375 (528)
T KOG0253|consen 298 ESDLDDSKSSAAKEVRGGTTNLLS-PKLRKTTLLLWRIWFGNAFSYYGSVL-LTTELFQSGDACPLYNRFLPTELETRAN 375 (528)
T ss_pred hhchhhhhhccccccccchHhhcC-hHHHHHHHHHHHHHHhhHHHHHHHHH-HHHHHHhccCccccchhcchhHHHhhhc
Confidence 011111 111222334555554 55777777766677665555444333 3333333211
Q ss_pred --CCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHH
Q psy7924 291 --SSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVF 367 (481)
Q Consensus 291 --~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
.+. ..+.-..+..+..++|.++.+++.||+|||+.+..++++++++.+++... .......+..+..
T Consensus 376 c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c-----------~~rn~~tvllf~a 444 (528)
T KOG0253|consen 376 CPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC-----------KTRNAYTVLLFTA 444 (528)
T ss_pred CCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh-----------cCcchhHHHHHHH
Confidence 111 12235667788999999999999999999999999999999988877653 2233344444555
Q ss_pred HHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 368 IIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 368 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
.++.+.++. ..|+|.+|+||+..|+++.|.+...+++|+++.|.+. +.....-..+..+++.++++.++...++--|
T Consensus 445 rafisg~fq-vaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ilagIavcffPiE 521 (528)
T KOG0253|consen 445 RAFISGAFQ-VAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILAGIAVCFFPIE 521 (528)
T ss_pred HHHHhchhe-EEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHHHHHheeeeec
Confidence 555555554 4479999999999999999999999999999999887 4444445567778888888888887777678
Q ss_pred CCCCC
Q psy7924 448 TKGKT 452 (481)
Q Consensus 448 ~~~~~ 452 (481)
||+|.
T Consensus 522 tkGR~ 526 (528)
T KOG0253|consen 522 TKGRS 526 (528)
T ss_pred cCCCC
Confidence 88875
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=243.73 Aligned_cols=345 Identities=17% Similarity=0.181 Sum_probs=263.8
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
..+.+|++.+ |+|+|..+.|++.|.|.++.+++.|+...+.||+.||++++..+.++.++++++++++||+ .+
T Consensus 32 ~~gLLp~iA~---dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~--~L-- 104 (394)
T COG2814 32 PVGLLPPIAA---DLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFA--VL-- 104 (394)
T ss_pred HHhchHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHH--HH--
Confidence 3678899999 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSR 160 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 160 (481)
+++|++. |+..|..+..... +++|+++.+....+. .++..++..++
T Consensus 105 --l~aR~~~--g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~--------------------tlA~v~GvPLG--- 157 (394)
T COG2814 105 --LLARALA--GLAHGVFWSIAAALAARLVPPGKRGRALALVFTGL--------------------TLATVLGVPLG--- 157 (394)
T ss_pred --HHHHHHH--HHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHH--------------------HHHHHHhccHH---
Confidence 9999999 9999988877766 889999999999998 66666665555
Q ss_pred hhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 161 RLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 161 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
....+..|||..|+..+.++++..+..+ .+| |+. ..++
T Consensus 158 ------t~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~---------------------------------~~~~ 196 (394)
T COG2814 158 ------TFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSE---------------------------------ISGS 196 (394)
T ss_pred ------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--Ccc---------------------------------CCCC
Confidence 3334889999999999999998877777 578 210 0011
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD 318 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d 318 (481)
++.+..+..+.+|+|+.+..+.... ......+..+.|..|++.+..|++. ..++....++++.++|+.+.|++.|
T Consensus 197 ~~~~~~~~~~~l~~p~v~~~l~~t~----l~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~~gGrl~d 272 (394)
T COG2814 197 LPGPLRTLLRLLRRPGVLLGLLATF----LFMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNLLGGRLAD 272 (394)
T ss_pred CCcchhHHHHHhcCchHHHHHHHHH----HHHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 1112223556788775444433333 3333334566677788888889887 6678999999999999999999999
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHH
Q psy7924 319 RLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSI 398 (481)
Q Consensus 319 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 398 (481)
| +.|+.+.....+..+..+.+.+. .++.+.......+.++......... ....++.. ++.+..+.++
T Consensus 273 r-~~~~~l~~~~~l~a~~~l~l~~~----------~~~~~~~~~~~~~wg~a~~~~~~~~-~~~~a~~~-p~~~~~a~sl 339 (394)
T COG2814 273 R-GPRRALIAALLLLALALLALTFT----------GASPALALALLFLWGFAFSPALQGL-QTRLARLA-PDAADLAGSL 339 (394)
T ss_pred c-cchhHHHHHHHHHHHHHHHHHHh----------cchHHHHHHHHHHHHHHhhhhhhHH-HHHhcccC-CCchHHHHHH
Confidence 9 88888888877777777776553 2333333333333332222222112 23344422 5778999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 399 ACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 399 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
+....|+|..+|..+.|.+.|+.|+....++.+.+.++..++....
T Consensus 340 ~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~~ 385 (394)
T COG2814 340 NVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALLS 385 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888888777777766665544
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-31 Score=251.78 Aligned_cols=384 Identities=19% Similarity=0.191 Sum_probs=278.0
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~ 100 (481)
.++.+.....+..+++++|..+|++++|+++||+|||++++.+.++..++.+.+++++|++ .+ ++.|++. |+
T Consensus 112 ~~c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~--~~----~~~Rfl~--G~ 183 (521)
T KOG0255|consen 112 LVCDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYW--MF----LIFRFLS--GF 183 (521)
T ss_pred eeeCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHH--HH----HHHHHHH--Hh
Confidence 5677788899999999999999999999999999999999999999999999999999999 99 9999999 99
Q ss_pred cceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhh
Q psy7924 101 KNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEA 173 (481)
Q Consensus 101 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
+.+........ +++|+.+..+....+ ..|....+..++ ...
T Consensus 184 ~~~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~--------------------~~~~~~~~~~a~------------~~~ 231 (521)
T KOG0255|consen 184 FGSGPLTVGFGLVAEIVSPKQRGLALTLGGFFF--------------------VGGLMLPAGAAY------------ITR 231 (521)
T ss_pred hccchhHHhHhhheeecCcchhhHHHHHHHHHH--------------------HHHHHHHHHHHH------------HHh
Confidence 98877766655 899999998833333 344333333331 122
Q ss_pred HHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCC---ccchHHHHHH-HH--hhhhhccCccch
Q psy7924 174 SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSE---YDIDSEITDM-QN--SLEKERSDKVPL 247 (481)
Q Consensus 174 ~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~-~~--~~~~~~~~~~~~ 247 (481)
+||+.+++..++.++.++..++.||||||+..+++.+++.+.++++.+.+ ....+..+.. .. ......+++..+
T Consensus 232 ~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (521)
T KOG0255|consen 232 DWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELLLRPLKLLFTEPKISF 311 (521)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhHhhhhccCCCCch
Confidence 89999999999999888886677899999999999999999999886543 2222222211 11 111111233557
Q ss_pred HHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Q psy7924 248 MQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLL 327 (481)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 327 (481)
.+.++.|+.++.++.....++.... ..+-..... .+++.+........+..........+...|+.|||....
T Consensus 312 ~~l~~~~~l~~~~~~~~~~~~~~~~-----~y~gl~~~~--~~lg~~~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~ 384 (521)
T KOG0255|consen 312 LDLFRTPRLRYRTLYLLFIWFVFSL-----VYYGLSLNV--SGLGGNIYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLF 384 (521)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHhH-----HHHhhhhhh--hhcCchHHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHH
Confidence 8889888766766666655532211 111122222 234445566666666788888888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHH
Q psy7924 328 VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSV 407 (481)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~ 407 (481)
.+..+..++.+..++.... ...+.......+..++.+.++... +.+.+|++|+..|..+.+......++++
T Consensus 385 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~pt~~r~~~~~~~~~~~~~~~ 455 (521)
T KOG0255|consen 385 LSLFLAGIGLLLFGWLPDD--------LGGWLHWILPLLGKFFIGSAFNLI-FLYSAELIPTVVRNTAVGAISAAARLGS 455 (521)
T ss_pred HHHHHHHHHHHHHHHhhcc--------chhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 9999999999888775311 110133344444444455555555 6899999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHhc
Q psy7924 408 LVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELG 461 (481)
Q Consensus 408 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (481)
+++|.+...... ......+.+++....+.+.+...++||++++.+.+..++.+
T Consensus 456 i~ap~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~t~~~~~ 508 (521)
T KOG0255|consen 456 ILAPLFPLLLRQ-MFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPGTLLDAE 508 (521)
T ss_pred HHHHHHHHHHhh-hcccchHHHHHHHHHHHHHHHHhcCcccCCCCCchhHHHHH
Confidence 999988643333 33333333456667777777778899999998765544443
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=247.05 Aligned_cols=343 Identities=11% Similarity=0.028 Sum_probs=223.6
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVF 86 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (481)
..+|.+|.+++ |+|+|++|.|++.+.+.+++.+++++.|+++||+|||+++..+......+.......++++ .+
T Consensus 9 ~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~l- 82 (368)
T TIGR00903 9 TFSPVLSLVAE---DIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRLLDPFNYE--WL- 82 (368)
T ss_pred HHHhhHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHhccHH--HH-
Confidence 34788999999 9999999999999999999999999999999999999987766555555443333336788 88
Q ss_pred hhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSR 160 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 160 (481)
++.|++. |++.+...+.... +++|+++.++...+. .+|..+++.++..
T Consensus 83 ---~~~R~l~--G~g~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~--------------------~lG~~l~~~~~~~- 136 (368)
T TIGR00903 83 ---LACQLLA--ALGQPFLLNAFAPAASQIREERRDLVISLLSFAM--------------------YLGIIFALAAGLK- 136 (368)
T ss_pred ---HHHHHHH--HhHhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH-
Confidence 9999999 9998753322221 689999999999998 8888888877722
Q ss_pred hhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 161 RLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 161 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
.....+||+.|++.++++++..+..+ ++||+|++.. +..+ . + + .
T Consensus 137 --------l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~~----------------~--~---~---~ 181 (368)
T TIGR00903 137 --------IYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGFG----------------F--K---D---A 181 (368)
T ss_pred --------HHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCcc----------------h--H---H---H
Confidence 22457999999998888776655554 6899986421 0000 0 0 0 0
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDR 319 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~ 319 (481)
..+++++++++..+. .....++. ...++....|.|.++++.|++.+.+.......+.+. +..++++||
T Consensus 182 ----~~~~~~ll~~~~~~~----~~~~~~~~-~~~~~~~~~wlp~~L~~~g~s~~~~~~~~l~~~~g~---~g~~~~~d~ 249 (368)
T TIGR00903 182 ----VKEFGALAGRKDLWI----IGAILGFG-VALFDNLAIWLEAALRPAGLEDIAGDAVALAILAGL---IGVAVIPDR 249 (368)
T ss_pred ----HHHHHHHHcChhHHH----HHHHHHHH-HHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH---HHHHHhhHH
Confidence 013567788764322 22222222 222345556777777777776543334333444444 445778888
Q ss_pred hCCh---HHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 320 LGRR---ILLLV-SAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 320 ~grr---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
..|| +.... .....++....+.. ..+.........+.+++ .....+..+.+.+|.+|++.|+++
T Consensus 250 ~~r~~~r~~~~~~~~~~~a~~~~~~~~-----------~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~p~~~rgt~ 317 (368)
T TIGR00903 250 VARAGLRSIYIRAAALLIAAFFLALAF-----------ELNRLALFAFIGIAGLL-MLPAYAIIMDWIGKFCDKELHGKA 317 (368)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHH-----------ccccHHHHHHHHHHHHh-hhhhHHHHHHHHHHhcchhhcCcc
Confidence 7653 33222 23333332222221 11122222222222222 222223455788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (481)
.|+.+..+++++..+|.+.+.+.. +....|.++++..+++.+...
T Consensus 318 ~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 318 AGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred cchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887773 555677777777777666553
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=248.54 Aligned_cols=352 Identities=11% Similarity=0.019 Sum_probs=243.7
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAV 85 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (481)
....|.+|.+++ |+|+|.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+++++.+.++++++++ .+
T Consensus 26 ~~~~~~lp~i~~---~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~--~l 100 (393)
T PRK09705 26 TSVGPLLPQLRQ---ASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELYPQSA--LL 100 (393)
T ss_pred hccchhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHCcchH--HH
Confidence 345788999999 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
+++|+++ |++.+...+.... +++|+++.+....+. ..|..++..+...
T Consensus 101 ----l~~r~l~--Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------~~g~~~g~~~~~~ 154 (393)
T PRK09705 101 ----LSSALLG--GVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAAL--------------------MGGGGLGAAITPW 154 (393)
T ss_pred ----HHHHHHH--HhHHHHHhhhhhHHHHHHccccchhHHHHHHHHH--------------------HHHHHHHHHHHHH
Confidence 9999999 9999876655544 678899999888777 6777776666521
Q ss_pred hhhhhHhhccchh-hHHHHHHHHhhHHHHHHHHHHhcc-CCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 160 RRLAQVIKERKFE-ASVYGLSIICALLPIFFVGLMLLM-PESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 160 ~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
..++ .+||..+.+.++..++.....+.. ++.|+ +
T Consensus 155 ---------l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--------------------------- 190 (393)
T PRK09705 155 ---------LVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA--------S--------------------------- 190 (393)
T ss_pred ---------HHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------c---------------------------
Confidence 1133 379988776655544433333222 11110 0
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l 316 (481)
+++ ++.+.++.+++++.+. ......... ..+.....+.|.+.++.|.+. +.+....+..++.++++++.+++
T Consensus 191 -~~~-~~~~~~~~l~~~~~~~----l~~~~~~~~-~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~~~g~l 263 (393)
T PRK09705 191 -SHK-TTTTPVRVVFTPRAWT----LGVYFGLIN-GGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGALLMPAM 263 (393)
T ss_pred -ccC-CCcCCcccccCHhHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 000 0011123344432221 111222222 223444455565566678877 56778888889999999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccC-cccchhhH
Q psy7924 317 VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF-PSQIKGIA 395 (481)
Q Consensus 317 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~ 395 (481)
.||++||+....+..+..++...+... +...... ...+.+.+.+... +.......+.+ |++.|++.
T Consensus 264 ~~r~~~~~~~~~~~~l~~~~~~~~~~~----------~~~~~~~--~~~l~g~g~g~~~-~~~~~~~~~~~~~~~~~g~~ 330 (393)
T PRK09705 264 ARHQDRRKLLMLALVLQLVGFCGFIWL----------PLQLPVL--WAMVCGLGLGGAF-PLCLLLALDHSVQPAIAGKL 330 (393)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHc----------cchHHHH--HHHHHHHhccchH-HHHHHHHHhhcCCHHHHHHH
Confidence 999999998888877766665544321 1111111 1222333333332 22334444655 46789999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhccCCCCCC
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAVFTYILVPETKGKT 452 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (481)
.|+.+..++++..++|.+.|++.|..| +...+.+..+++++..++...+.||++.+.
T Consensus 331 ~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (393)
T PRK09705 331 VAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQL 388 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccch
Confidence 999999999999999999999999987 555666666666666666677778877664
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-32 Score=254.61 Aligned_cols=348 Identities=13% Similarity=0.097 Sum_probs=237.3
Q ss_pred cccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHH
Q psy7924 3 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMAL 82 (481)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
++.....+.+|.+.+ |+|+++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++++++++++
T Consensus 32 ~~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~- 107 (426)
T PRK12307 32 FDFMLIFYIMYLIKA---DLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLASGVI- 107 (426)
T ss_pred hHHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHhHHH-
Confidence 344455677888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 83 GAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 83 ~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
.+ +++|++. |++.+...+.... +++|+++.+....+. .+|..+++.
T Consensus 108 -~l----~~~r~l~--G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~lg~~~~~~ 160 (426)
T PRK12307 108 -ML----TLSRFIV--GMGMAGEYACASTYAVESWPKHLKSKASAFLVSGF--------------------GIGNIIAAY 160 (426)
T ss_pred -HH----HHHHHHH--HHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHH--------------------hHHHHHHHH
Confidence 99 9999999 9988765554433 677899999988888 888888776
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN 235 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 235 (481)
+. .......+||+.+++..+..++........||++++..++.+. ++.+
T Consensus 161 l~---------~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~------------~~~~---------- 209 (426)
T PRK12307 161 FM---------PSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSG------------KGKH---------- 209 (426)
T ss_pred HH---------HHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHHhhhhc------------cccc----------
Confidence 65 1222456899999886654444333333467776542211000 0000
Q ss_pred hhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 236 SLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
.....+..+.+.++.++++..+..... ....+.. .........+.|.+.++.|.+. ..+.......++.+++.++.+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~g 287 (426)
T PRK12307 210 SQSAWSVFSLSMKGLFNRAQFPLTLCV-FIVLFSI-FGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIVWG 287 (426)
T ss_pred cccchhhhhHHHHHHHhhchHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011245667776644332221 1111111 1112223445566666677765 445666777888999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHh-hccCchhhhhhcccCcccchh
Q psy7924 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFS-LGFGPIPWMLVGEIFPSQIKG 393 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~r~ 393 (481)
++.||++||+.+..+.++..+..+..... ..... .....+.++.+.. .+..+....++.|.+|++.|+
T Consensus 288 ~l~dr~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~g 356 (426)
T PRK12307 288 LCADRIGLKKTFSIGLLMSFLFIFPLFRI----------PQDNY-LLLGACLFGLMATNVGVGGLVPKFLYDYFPLEVRG 356 (426)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHH----------ccccH-HHHHHHHHHHHHhcccHhHHHHHHHHHhCcHHHHh
Confidence 99999999998887777665554433221 11111 1122222322221 223334446778999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhcCCh
Q psy7924 394 IAVSIACLFNWVSVLVVTKFFGDVTLLLGGHG 425 (481)
Q Consensus 394 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 425 (481)
++.|+.+...++++.++|.+.+.+.+..|+..
T Consensus 357 ~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~ 388 (426)
T PRK12307 357 LGTGLIYNLAATSGTFNSMAATWLGITMGLGA 388 (426)
T ss_pred hhhhHHHHHHhHHHHHHHHHHHHHHHcccHHH
Confidence 99999999999999999999999998887643
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-32 Score=251.90 Aligned_cols=368 Identities=12% Similarity=0.030 Sum_probs=238.7
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGS 88 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 88 (481)
++.+|.+.+ ++|++.++.+++.+.+.+++.+++++.|+++||+|||+++.++.++..++.++++++++++ .+
T Consensus 43 ~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~l--- 114 (434)
T PRK11663 43 NAAMPEMLA---DLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFSSSLW--AF--- 114 (434)
T ss_pred HHhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHH--HH---
Confidence 567888888 9999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred hHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 89 PVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 89 ~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
++.|++. |++.|...+.... +++|++..++.+.+. .+|..+++.+..
T Consensus 115 -~~~~~l~--g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~--------------------~~g~~~~~~~~~--- 168 (434)
T PRK11663 115 -ALLWVLN--AFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAH--------------------NVGGALIPLVVG--- 168 (434)
T ss_pred -HHHHHHH--HHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH---
Confidence 8889988 8777765544333 567999999998888 888887776652
Q ss_pred hhhHhhccchhhHHHHHHHHhhHHHHHHHHH-HhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhh
Q psy7924 162 LAQVIKERKFEASVYGLSIICALLPIFFVGL-MLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240 (481)
Q Consensus 162 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
......+||+.|++.+++.++..+. .+++||+|++.......+..++ . ++.+ +++
T Consensus 169 ------~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------~----~~~~---~~~ 224 (434)
T PRK11663 169 ------AIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-----------A----LELA---QQQ 224 (434)
T ss_pred ------HHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-----------c----cccc---hhc
Confidence 2224568999999988876655443 3457888754311100000000 0 0000 000
Q ss_pred ccCccchHH-----HhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHHHHHHHHHHHHHHHH
Q psy7924 241 RSDKVPLMQ-----AFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCTIIVGTIMMVTTWIA 313 (481)
Q Consensus 241 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 313 (481)
+.++.+.++ .++++..+ ......... ...+.....+.|.+. ++.|++. +.+.......++..+++++.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g~~~~ 299 (434)
T PRK11663 225 EGAGLSRKEILTKYVLLNPYIW----LLSFSYVLV-YVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIGALVA 299 (434)
T ss_pred cccCCChhhhHHHHHhcChHHH----HHHHHHHHH-HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112222 33443222 211112222 222333444555555 5578877 55667777888999999999
Q ss_pred HHHHHHh--CChHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc
Q psy7924 314 TMIVDRL--GRRILL-LVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ 390 (481)
Q Consensus 314 g~l~d~~--grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 390 (481)
|+++||+ ++|+.. ........+....+... . ..+...........+.+ ..+..........|.+|++
T Consensus 300 g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~ 369 (434)
T PRK11663 300 GWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM---P------FASYVMQAACFFTIGFF-VFGPQMLIGMAAAECSHKE 369 (434)
T ss_pred hhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc---c------cccHHHHHHHHHHHHHH-HhhHHHHHHHHHHhcccHh
Confidence 9999998 333332 22222222221111111 0 11111111111222211 1111122235668999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 391 IKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 391 ~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
.|+++.|+.+...++|.+++|.+.+.+.|..||...|...++++++.++..+...++++
T Consensus 370 ~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 370 AAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred hHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999998998888887777666655544433
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-32 Score=232.52 Aligned_cols=369 Identities=15% Similarity=0.113 Sum_probs=257.3
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGS 88 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 88 (481)
+-+.|.+++ |.++|.+|.|++.|.+.+.|.++-.+.|.++||.+.|..+.+++++.++.+++.+++++.. .+
T Consensus 49 ~~a~p~l~e---~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs~s~~--~~--- 120 (448)
T COG2271 49 NLAMPALIE---DGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFSPSLF--LF--- 120 (448)
T ss_pred hhccHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhhhHHH--HH---
Confidence 456789999 9999999999999999999999999999999999999999999999999999999999999 88
Q ss_pred hHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 89 PVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 89 ~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
.+..++. |...|.-.+.+.. .++||...++++.+. ++|..+.+.+...
T Consensus 121 -~~l~~ln--g~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~sh--------------------NiGGal~~~~~~l-- 175 (448)
T COG2271 121 -AVLWVLN--GWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSH--------------------NIGGALAPLVALL-- 175 (448)
T ss_pred -HHHHHHH--HHHhcCCCcHHHHHHHHHcCccccCceEEEehhhh--------------------hcccchHHHHHHH--
Confidence 8888888 8888777766655 889999999999999 8888877766621
Q ss_pred hhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhh
Q psy7924 162 LAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240 (481)
Q Consensus 162 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
.....+.+||..|++.++++++..+..+ ..+|+|+-.-- .+.+| .+++ ..+.. .+++
T Consensus 176 -----a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GL-P~ie~-------~~~d-------~~e~~--~~~~ 233 (448)
T COG2271 176 -----AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGL-PPIEE-------YRGD-------PLEIY--EEEK 233 (448)
T ss_pred -----HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCC-CCHHH-------hhcC-------chhhh--hhhc
Confidence 2222455999999999999998877776 47888843100 00000 0000 00000 1111
Q ss_pred ccCccchHH-----HhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 241 RSDKVPLMQ-----AFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 241 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
+.+..+.++ +++|| .++..+....+....-+....+-+.++.+..|++. ++......+=.++++|++++|
T Consensus 234 ~~~~ls~~~i~~~YVL~Nk----~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G~Ll~G 309 (448)
T COG2271 234 ENEGLTAWQIFVKYVLKNK----LIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPGTLLAG 309 (448)
T ss_pred cCCCccHHHHHHHHHHcCh----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 111133444 45554 23333334444444434444444445566688887 677888889999999999999
Q ss_pred HHHHHh--CChHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc
Q psy7924 315 MIVDRL--GRRILLL-VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI 391 (481)
Q Consensus 315 ~l~d~~--grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 391 (481)
+++||+ |||.... +.++...++.+.+... ++.+.....+.+.+.++.. .+...+.-....|..|.+.
T Consensus 310 wlSDklfkgrR~p~~~i~~~~i~~~~~~~w~~---------~~~~~~l~~~~l~~iGf~I-yGPqmLiGl~a~e~~pK~A 379 (448)
T COG2271 310 WLSDKLFKGRRGPMALIFMLLITASLVLYWLA---------PNGSYLLDAILLFIIGFLI-YGPQMLIGLAAAEFVPKKA 379 (448)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHHHHHcC---------CCccHHHHHHHHHHHHHHH-hhHHHHHHHHHhccccHhh
Confidence 999997 5665443 3333333333333221 0122233333333333222 2222333466779999999
Q ss_pred hhhHHHHHHHHHHH-HHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcc
Q psy7924 392 KGIAVSIACLFNWV-SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVP 446 (481)
Q Consensus 392 r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
-|++.|+...++++ |...+....+.+.|..||...|.++.+.++++.+++.....
T Consensus 380 aGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 380 AGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred ccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999 88888888999989999999998888777777666655443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-31 Score=245.87 Aligned_cols=344 Identities=13% Similarity=0.085 Sum_probs=243.2
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
..+.+|.+.+ |+|.|+++.+++.+.+.+++.+++++.|+++||+|||+++..+..+..++++.++++++++ .+
T Consensus 28 ~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~l-- 100 (390)
T PRK03545 28 PVGLLSDIAQ---SFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALAWNFT--VL-- 100 (390)
T ss_pred HHcchHHHHh---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhccHH--HH--
Confidence 3566788888 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSR 160 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 160 (481)
+++|+++ |++.+...+.... +++|+++.++...+. .+|..+++.++.
T Consensus 101 --~~~r~~~--G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~--------------------~~g~~ig~~l~~-- 154 (390)
T PRK03545 101 --LISRIGI--AFAHAIFWSITASLAIRVAPAGKKAQALSLLATGT--------------------ALAMVLGLPLGR-- 154 (390)
T ss_pred --HHHHHHH--HHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHH--------------------HHHHHHHhhHHH--
Confidence 9999999 9888765543332 678999999998888 888888777762
Q ss_pred hhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 161 RLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 161 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
...+..+||+.|++.+++.++..+..+ .+||.|+. +
T Consensus 155 -------~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~~-----~------------------------------- 191 (390)
T PRK03545 155 -------VIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPSE-----H------------------------------- 191 (390)
T ss_pred -------HHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCCC-----C-------------------------------
Confidence 222567999999999888776655444 46665410 0
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD 318 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d 318 (481)
+++.++.++.+|++..+......+. .....+....+..+++.+..|.+. ..+.......++.++++++.++++|
T Consensus 192 -~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~l~d 266 (390)
T PRK03545 192 -SGSLKSLPLLFRRPALVSLYLLTVV----VVTAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSVLFSRLGN 266 (390)
T ss_pred -cchHHHHHHHHhCcHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0001123456676644332222211 111112223344455555567776 4566777788899999999999999
Q ss_pred HhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHH
Q psy7924 319 RLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSI 398 (481)
Q Consensus 319 ~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 398 (481)
|++||+.. .+..+..++...+... .++.+.......+.+.+.. ...+.....+.|..| +.|+++.|+
T Consensus 267 r~~~~~~~-~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~g~ 333 (390)
T PRK03545 267 RHPSGFLL-IAIALLLVCLLLLLPA----------ANSEWHLSVLSIFWGIAIM-CIGLAMQVKVLKLAP-DATDVAMAL 333 (390)
T ss_pred ccchhHHH-HHHHHHHHHHHHHHHH----------hchHHHHHHHHHHHHHHHh-cchHHHHHHHHHhCC-CcHHHHHHH
Confidence 99987654 3433333333322221 1222333333334444332 223333356667776 688999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy7924 399 ACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILV 445 (481)
Q Consensus 399 ~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (481)
.+...++|..++|.+.|.+.|+.|++..+...+.+..+..++.....
T Consensus 334 ~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 334 FSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999888877777666665554
|
|
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-31 Score=246.89 Aligned_cols=354 Identities=16% Similarity=0.146 Sum_probs=213.6
Q ss_pred cccccccccCCCCcc---cCchhhHHHH---HHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhH-
Q psy7924 9 SPAGDRLIAGEYPFL---VTESDLSFIG---SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMA- 81 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~---~~~~~~~~~~---s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~- 81 (481)
+...|.+.+ |++ .+..+.+... +..+++..++++++|+++||+|||+++..+..++.++++++++++++.
T Consensus 42 ~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~ 118 (432)
T PRK10406 42 SFCSLYFAH---IFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACLPGYET 118 (432)
T ss_pred HHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhcCCchh
Confidence 444566666 663 4555444444 444555559999999999999999999999999999999999988763
Q ss_pred -----HhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccch
Q psy7924 82 -----LGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLA 149 (481)
Q Consensus 82 -----~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 149 (481)
...+ ++.|+++ |++.|...+.... +++|++..+....+. ..|
T Consensus 119 ~~~~~~~~l----~~~R~l~--G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~--------------------~~G 172 (432)
T PRK10406 119 IGTWAPALL----LLARLFQ--GLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTL--------------------IGG 172 (432)
T ss_pred HHHHHHHHH----HHHHHHH--HhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHH--------------------HHH
Confidence 1145 8999999 9999887766555 688898888877777 677
Q ss_pred hhhhhhhhhhhhhhhHhh-ccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchH
Q psy7924 150 ILCPISISQSRRLAQVIK-ERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDS 228 (481)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 228 (481)
..++..+..... .... ......+||++|++.++++++...+...+||+|++..+
T Consensus 173 ~~~~~~~~~~~~--~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~~e~~~~~~~----------------------- 227 (432)
T PRK10406 173 QLLALLVVVVLQ--QTLEDAELREWGWRIPFALGAVLAVVALWLRRQLDETSQQETR----------------------- 227 (432)
T ss_pred HHHHHHHHHHHH--HhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcCCCCchHHHh-----------------------
Confidence 666665431110 0000 00124689999999888887766555568888743100
Q ss_pred HHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHH-hhhcCCCC-chhHHHHHHHHHH
Q psy7924 229 EITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI-FKDAGSSL-NPNLCTIIVGTIM 306 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~ 306 (481)
+++++.++++.+++++.+ ............. ++....+.|.+ .+..|++. +.+.......+..
T Consensus 228 -----------~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~-~~~~~~~lp~~l~~~~g~s~~~~~~~~~i~~~~~ 292 (432)
T PRK10406 228 -----------ALKEAGSLKGLWRNRRAF---IMVLGFTAAGSLC-FYTFTTYMQKYLVNTAGMHANVASGIMTAALFVF 292 (432)
T ss_pred -----------hhcccccHHHHHhhHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 000122466677654222 1111111111222 23334445544 45567776 4455566666777
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhccc
Q psy7924 307 MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEI 386 (481)
Q Consensus 307 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 386 (481)
.++.++.|+++||++||+.+....++..+......... .. ............+.....+. ..+..+.+.+|.
T Consensus 293 ~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~ 364 (432)
T PRK10406 293 MLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL--QN-----VSSPYAAFGLVMCALLIVSF-YTSISGILKAEM 364 (432)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH--Hc-----CCcHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 88888999999999999987766554433332221111 00 11111111111111112212 123345778899
Q ss_pred CcccchhhHHHHHHHHHHHH-HHHHHhHHHHHHHhhcCChh-HHHHHHHHHHHHHH
Q psy7924 387 FPSQIKGIAVSIACLFNWVS-VLVVTKFFGDVTLLLGGHGA-FWIFSVIAALGAVF 440 (481)
Q Consensus 387 ~p~~~r~~~~g~~~~~~~~g-~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~ 440 (481)
+|++.|+++.|+.+..++.. +...|.+.+ +.+..|.... +...++..++..+.
T Consensus 365 fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~-~l~~~g~~~~~~~~~~~~~~i~~~~ 419 (432)
T PRK10406 365 FPAQVRALGVGLSYAVANALFGGSAEYVAL-SLKSIGMETAFFWYVTLMAVVAFLV 419 (432)
T ss_pred CCCCccchhhhHHHHHHHHHHHhHHHHHHH-HHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999887753 444666666 5566664443 43333344443333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-31 Score=251.89 Aligned_cols=369 Identities=14% Similarity=0.075 Sum_probs=235.4
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH-----HHHhHH
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI-----GSSMAL 82 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~ 82 (481)
.++..|.+.+ |+|++.++.|++.+.+.+++++++++.|+++||+|||+++..+.+++++.....++ +++++
T Consensus 48 ~~~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 123 (467)
T PRK09556 48 FKAAQNDMIS---TYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLG- 123 (467)
T ss_pred hhhhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcccchHH-
Confidence 3566788888 99999999999999999999999999999999999999999888887777766655 57888
Q ss_pred hHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 83 GAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 83 ~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
.+ ++.|++. |++.+...+.... +++|+++.++...+. .+|..+++.
T Consensus 124 -~l----~~~r~l~--G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~--------------------~lG~~l~~~ 176 (467)
T PRK09556 124 -LM----IALWALS--GFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISH--------------------NLGGAGAGG 176 (467)
T ss_pred -HH----HHHHHHH--HHHHhccchHHHHHHHHHcCccceeeeEEeeeccc--------------------chhhhHHHH
Confidence 88 9999999 9988776655444 678999999988888 888888776
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (481)
+.... .. .....+||..|.+.+++.++..+..+ +.+++|+....+.. ++ . ..+ . ..++ +
T Consensus 177 i~~~~-----~~-~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~~~~-~~---~---~~~-~--~~~~----~ 236 (467)
T PRK09556 177 VALWG-----AN-YFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGWGKA-EE---I---FGE-P--ISEE----D 236 (467)
T ss_pred HHHHH-----HH-hhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCCCCh-hh---c---ccC-c--cchh----h
Confidence 65211 00 00112599988888877776655554 45776643111110 00 0 000 0 0000 0
Q ss_pred HhhhhhccC-ccch-HHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHH-HhhhcCCCC-chhHHHHHHHHHHHHHH
Q psy7924 235 NSLEKERSD-KVPL-MQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK-IFKDAGSSL-NPNLCTIIVGTIMMVTT 310 (481)
Q Consensus 235 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~ 310 (481)
+..++++.. .... ++.++++..+ ......++.... +.....+.|. +.+..|++. +.+.......++.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~-~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~~~~~~ig~ 311 (467)
T PRK09556 237 KETESTDMTKWQIFVEYVLKNPVIW----LLCFANIFLYIV-RIGIDNWSPVYAFQELGFSKEDAINTFTLFEIGALVGS 311 (467)
T ss_pred hccccccCcHHHHHHHHHHcChHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHH
Confidence 000000000 0111 2255664332 222222222222 2334455564 445678887 55667777888899999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc
Q psy7924 311 WIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ 390 (481)
Q Consensus 311 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 390 (481)
++.|+++||++||+.+........++....... . .++.....+.....+.+. .+..........|.+|++
T Consensus 312 ~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~~~G~~~-~~~~~~~~~~~~~~~p~~ 381 (467)
T PRK09556 312 LLWGWLSDLANGRRALVACIALALIIFTLGVYQ---H------ATSEYMYLASLFALGFLV-FGPQLLIGVAAVGFVPKK 381 (467)
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHHHHHHHH---h------cCcHHHHHHHHHHHHHHH-hhHHHHHHHHHHhhcchh
Confidence 999999999999887665444333322222111 0 112222222222332221 111112224566999999
Q ss_pred chhhHHHHHHHHHHH-HHHHHHhHHHHHHH------------hhcCChhHHHHHHHHHHHHHHHH
Q psy7924 391 IKGIAVSIACLFNWV-SVLVVTKFFGDVTL------------LLGGHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 391 ~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~------------~~g~~~~~~~~~~~~~~~~~~~~ 442 (481)
.|+++.|+.+..+++ |.+++|.+.|.+.| ..+|+..|.+..++.+++.+...
T Consensus 382 ~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~ 446 (467)
T PRK09556 382 AIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMA 446 (467)
T ss_pred hHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999997 77999999999999 56788888877666666555443
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=248.78 Aligned_cols=337 Identities=17% Similarity=0.125 Sum_probs=235.0
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
....++..|.+.+ |+|.++++.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.+++.++++++ .
T Consensus 31 ~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~ 105 (406)
T PRK11551 31 LQSAGVAAPRMAQ---EFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQAWDFP--S 105 (406)
T ss_pred HHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH--H
Confidence 3445667788888 9999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..++...+. .+|..+++.++
T Consensus 106 ~----~~~~~l~--G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~ 159 (406)
T PRK11551 106 L----LVARLLT--GVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGV--------------------PFGGALASVIG 159 (406)
T ss_pred H----HHHHHHH--HhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 8 9999999 9988766554433 578999999988888 88888777766
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
. ......+||+.+++.++..++..+... ++||+|++..++++.++.
T Consensus 160 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~------------------------ 206 (406)
T PRK11551 160 V---------LAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQR------------------------ 206 (406)
T ss_pred H---------HHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhh------------------------
Confidence 1 222456899999988776665554444 589987653221110000
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
+...++.+++++.++ ..... ...............+.|.+.++.|.+. +.+.......++.+++.++.|+
T Consensus 207 -------~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~ 277 (406)
T PRK11551 207 -------APVLRALFGEGRATA-TLLLW-ISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGA 277 (406)
T ss_pred -------hhhHHHHhhhhhhhH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHHHHH
Confidence 000111111111111 11111 1111111123344456677777778876 5677777888899999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
+.||+|||+.+..+.+...++.+.+.. .++.+...+...+.+.+.. +..+..+.+..|.+|++.|+++
T Consensus 278 l~dr~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~ 345 (406)
T PRK11551 278 LMDRLRPRRVVLLIYAGILASLAALAA-----------APSFAGMLLAGFAAGLFVV-GGQSVLYALAPLFYPTQVRGTG 345 (406)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHh-----------cCcHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcchhhhhhh
Confidence 999999999888766655555444432 1122222233333333322 2334445788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCChh
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLGGHGA 426 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~ 426 (481)
.|+.+...+++..++|.+.|.+.+..+....
T Consensus 346 ~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~ 376 (406)
T PRK11551 346 VGAAVAVGRLGSMAGPLLAGQLLALGRSTVG 376 (406)
T ss_pred hhHHHHhhhHHHHHHhhhHhhhhccCCchHH
Confidence 9999999999999999999999887554333
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-31 Score=247.19 Aligned_cols=360 Identities=14% Similarity=0.037 Sum_probs=238.1
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAV 85 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (481)
...++..|.+.+ ++|+++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++.+++.++++++++++ .+
T Consensus 29 ~~~~~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~l 103 (405)
T TIGR00891 29 FLVALVLAEVAG---EFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYI--TM 103 (405)
T ss_pred HHHHHHHHHHHH---HhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhccHH--HH
Confidence 345667788888 9999999999999999999999999999999999999999999999999999999999999 98
Q ss_pred hhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
++.|++. |++.+...+.... +++|+++.++...+. .+|..+++.+..
T Consensus 104 ----~~~~~l~--G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~l~~ 157 (405)
T TIGR00891 104 ----FIARLVI--GIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGY--------------------AVGAVVAAQVYS 157 (405)
T ss_pred ----HHHHHHH--HhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 9999999 9988877655443 678999999988888 888887777662
Q ss_pred hhhhhhHhhccchh--hHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 159 SRRLAQVIKERKFE--ASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 159 ~~~~~~~~~~~~~~--~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
.. ... .+||+.+++.++..++..+....+||+|++...+++.++..+..++..+.+...+.
T Consensus 158 ~l---------~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 220 (405)
T TIGR00891 158 LV---------VPVWGDGWRALFFISILPIIFALWLRKNIPEAEDWKEKHAGKALVRTMVDILYGGEHRIAN-------- 220 (405)
T ss_pred HH---------HHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhHHHHhhhhhhhhhHHHHHhccchhhhh--------
Confidence 11 122 24999999877776666655567899886643332222221111111111000000
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
..++...+.++.. ++.+......................++++++.++.|.+. +.+.......++.+++.++.++
T Consensus 221 --~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g~~~~g~ 296 (405)
T TIGR00891 221 --IVMTLAAAMVQSA--GKRWPTFVYLVVLVLFANLYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVGGCVFGF 296 (405)
T ss_pred --hhhhhhHHhhhhh--hhhhHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000000111111 1111112222222222222222222334445555677776 5566777888899999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
+.||+|||+.+..+.....+........ ..+.+...+...+.+.+.. +..+....++.|.+|++.|+++
T Consensus 297 l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 365 (405)
T TIGR00891 297 LGDWLGRRKAYVCSLLAGQLLIIPVFAI----------GANVAVLGLGLFFQQMLVQ-GIWGILPKHLGEYFPTDQRAAG 365 (405)
T ss_pred HHHHhCchhhhHHHHHHHHHHHHHHHHh----------CCchHHHHHHHHHHHHHHc-cchhhHHHHHhhhCCcchhHHH
Confidence 9999999998887766553332222111 1122222222233333322 3334445788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFW 428 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~ 428 (481)
.|+.+...+++..++|.+.|.+.|..| |+..+.
T Consensus 366 ~g~~~~~~~~g~~~g~~~~g~l~~~~g~~~~~~~ 399 (405)
T TIGR00891 366 LGFTYQLGNLGGALAPIIGALLAQRLDEYGTALA 399 (405)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhccccchhHH
Confidence 999999999999999999999999988 654443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=245.69 Aligned_cols=345 Identities=14% Similarity=0.041 Sum_probs=241.0
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
.++.+|.+.+ |+|+++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.+.++++++++ .+
T Consensus 22 ~~~~~~~~~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 94 (377)
T TIGR00890 22 WTLLAPPLGR---YFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLA--AL-- 94 (377)
T ss_pred hhhHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHHHHHH--HH--
Confidence 3567899999 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
++.|++. |++.+...+.... +++|+++.+....+. .+|..++..+..
T Consensus 95 --~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~~--- 147 (377)
T TIGR00890 95 --YLTYGLA--SAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGY--------------------GLGSFILSPLIT--- 147 (377)
T ss_pred --HHHHHHH--hHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhc--------------------chhHhHHHHHHH---
Confidence 9999999 9888765433322 678999988888887 777765444431
Q ss_pred hhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhh
Q psy7924 162 LAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240 (481)
Q Consensus 162 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
......+||+.|++.++..++..+..+ +++|+|+.. .++ + ++.
T Consensus 148 ------~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---------------~--------------~~~ 191 (377)
T TIGR00890 148 ------SVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL-IKT---------------N--------------IEV 191 (377)
T ss_pred ------HHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc-ccc---------------C--------------ccc
Confidence 111345899999999988877766555 455443210 000 0 000
Q ss_pred ccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 241 RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR 319 (481)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~ 319 (481)
++++.+.++.++++..+.... .. ....... .....+.+.+.++.+.+. ..+.......+...+++++.+++.||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr 266 (377)
T TIGR00890 192 SVKDYTVWEMLRTPQFWVLYL-SF---FLNAVSG-LLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPFLGALSDK 266 (377)
T ss_pred chhhhhHHHHHcCccHHHHHH-HH---HHHhHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001113345666654332211 11 1111111 122223333456667665 44567777888899999999999999
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHH
Q psy7924 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399 (481)
Q Consensus 320 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 399 (481)
+|||+.+..+.....++.+.+.... ............+.+...+... +....+..|.+|+++|+++.|+.
T Consensus 267 ~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~ 336 (377)
T TIGR00890 267 IGRQKTMSIVFGISAVGMAAMLFIP---------MLNDVLFLATVALVFFTWGGTI-SLFPSLVSDIFGPANSAANYGFL 336 (377)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHcc---------cchhHHHHHHHHHHHHHhccch-hccHHHHHHHhhhhhhhhHhHHH
Confidence 9999998888877777766554320 1111122222233333333322 33346788999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 400 CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 400 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
+....+|..++|.+.+.+.+..||+..+.+.+++.++.
T Consensus 337 ~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 337 YTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 99999999999999999999999988887776655543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=236.88 Aligned_cols=398 Identities=18% Similarity=0.179 Sum_probs=271.4
Q ss_pred cCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhH-----HhHhhhhhHHHHhhccc
Q psy7924 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMA-----LGAVFGSPVVGNLVDTV 98 (481)
Q Consensus 24 ~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~g~~~~~r~~~~~ 98 (481)
.++...+.+..+..+|..+|+++.|+++||+|||+++...+++.++++++++++.... ..++ ...|++.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L----~~~R~~L-- 154 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTL----CFFRFLL-- 154 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHH----HHHHHHh--
Confidence 5667788999999999999999999999999999999999999999999887763221 2255 8999999
Q ss_pred cccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhH--hhc-
Q psy7924 99 GRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQV--IKE- 168 (481)
Q Consensus 99 G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~--~~~- 168 (481)
|+|.|.-+|...+ .+.||...+..-... .+|.+.+..++........ ...
T Consensus 155 GiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Q--------------------g~GilaG~ivt~Iv~~~fe~~~~~~ 214 (538)
T KOG0252|consen 155 GIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQ--------------------GFGILAGGIVALIVSAIFEKIFNGP 214 (538)
T ss_pred hccccCCCcchHHHhhhhhhhccccceeEEEEEec--------------------chhHhhccHHHHHHHHHHhccCCCC
Confidence 9999999988877 667787777666555 6666665555421111100 000
Q ss_pred ---cchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcC-cHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCc
Q psy7924 169 ---RKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKN-RVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDK 244 (481)
Q Consensus 169 ---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (481)
..-..-||..+.+.+++++..+...+.+|||++|-.... +.+.+. ++..++... +.++.++.....+.++
T Consensus 215 ~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~M~Et~~Y~al~~~~~~~a~---~d~~k~~~~---~~~~~~~~~~~~~~~~ 288 (538)
T KOG0252|consen 215 STYPHLDGVWRIIFGLGAVPALLVLYFRLKMPETARYTALVSKKLKQAA---GDMKKVLSV---DIEAESTAESDVPPPS 288 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCcchhHHHHhhcCHhhhh---hcccccccc---ccchhhccccCCCCcc
Confidence 112345999999999999999998889999999863322 222222 222111111 0000000001111111
Q ss_pred cc---hHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchh-H---------HHHHHHHHHHHHHH
Q psy7924 245 VP---LMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPN-L---------CTIIVGTIMMVTTW 311 (481)
Q Consensus 245 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-~---------~~~~~~~~~~~~~~ 311 (481)
.+ +...+..+ .-+.++..+..++...... +....+...+++..|..+... . ...+.....++|..
T Consensus 289 ~~~~~F~~~f~~~-hg~~Llgt~~~WFllDiaf-y~~nL~~s~I~~~ig~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw 366 (538)
T KOG0252|consen 289 NSFGLFSRLFLRW-HGKHLLGTAGTWFLLDIAF-YGQNLFQSVIFSAIGVIPSANTYHELFKVAEGNLIIAVCSTVPGYW 366 (538)
T ss_pred cccchHHHHHHHH-HHHHHHHHHHHHHhhhhhh-hccccHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHccCCcee
Confidence 11 23333322 3355566666666655543 444556666777666655221 1 12222233355777
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc
Q psy7924 312 IATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI 391 (481)
Q Consensus 312 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 391 (481)
+...++|++|||+..+.+++++.+..+.++...... . .....++...+..++...+.+.....+.+|.+|++.
T Consensus 367 ~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~------~-~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParv 439 (538)
T KOG0252|consen 367 FTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQL------E-NTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARV 439 (538)
T ss_pred EEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccc------c-ccCceeehHHHHHHHHhcCCCceeEEeehhhchHHH
Confidence 788899999999999999999999888877643211 1 222334445556667777887777889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHH-----hhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHhcCC
Q psy7924 392 KGIAVSIACLFNWVSVLVVTKFFGDVTL-----LLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEIQMELGGN 463 (481)
Q Consensus 392 r~~~~g~~~~~~~~g~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (481)
|+++.|+....+-.|++++...+.+..+ ..+.+..++++++++.+..++. +++||++++.++|.+++.+.+
T Consensus 440 R~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T-~l~pEtk~~~leei~~e~~~~ 515 (538)
T KOG0252|consen 440 RSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFT-LLIPETKGKSLEEISNEEESN 515 (538)
T ss_pred hhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHhee-EEeecccccCHHHhcChhhcc
Confidence 9999999999999999999999999988 6788889999998888777666 456899999998886554433
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=248.08 Aligned_cols=366 Identities=11% Similarity=0.095 Sum_probs=235.2
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
.+...|.+.+ |+|++.++.|++.+++.+++++++++.|+++||+|||+++..+.+++.+++++++++++++ .+
T Consensus 27 ~~~~~~~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~--~l-- 99 (412)
T TIGR02332 27 IGFAGLTMGK---DLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATMFATGPE--SL-- 99 (412)
T ss_pred HHHHHHhhHh---hcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCHH--HH--
Confidence 3456677888 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSR 160 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 160 (481)
++.|++. |++.+...+.... +++|++..+....+. .+|..+++.++...
T Consensus 100 --~~~r~l~--G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~--------------------~~g~~~~~~~~~~l 155 (412)
T TIGR02332 100 --YLLRILV--GIAEAGFLPGILLYLTFWFPAYFRARANALFMIAM--------------------PVTMALGLILSGYI 155 (412)
T ss_pred --HHHHHHH--HHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHH
Confidence 9999999 9999887665433 567999999999888 88888877776211
Q ss_pred hhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhH---HhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 161 RLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQF---HLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 161 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~---l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
. ......+..+||+.|++.+++.++..+..+ ++||+|+. +.++ +.+...++.++++.+.++. +..
T Consensus 156 ~---~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~~----~~~~~~~~~~~~~~~~~~~----~~~ 224 (412)
T TIGR02332 156 L---ALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDEE----DKKALKEMIDNDQLTLEQP----EGA 224 (412)
T ss_pred H---hCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCHH----HHHHHHHHHHhcccccccc----ccc
Confidence 0 000011346899999998888776555444 68999842 2111 1111111111110000000 000
Q ss_pred hhhhc-cCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhc--CCCC-chhHHHHHHHHHHHHHHHH
Q psy7924 237 LEKER-SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDA--GSSL-NPNLCTIIVGTIMMVTTWI 312 (481)
Q Consensus 237 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~-~~~~~~~~~~~~~~~~~~~ 312 (481)
.++++ ..+..+++.+ ++. .+... .........+.....+.|.++++. +++. ..+.......++..++.++
T Consensus 225 ~~~~~~~~~~~~~~~~-~~~----~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~~~l~~~~g~l~ 298 (412)
T TIGR02332 225 FAHAAMPQRSMLREIF-TPA----IMLYT-LAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAIPQFCTIFGMIW 298 (412)
T ss_pred cccccccHHHHHHHhc-ChH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhHHHHHHHHHHHH
Confidence 00000 0011222333 222 22222 222233333455566777777764 4554 4566778888899999999
Q ss_pred HHHHHHHhCChHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc
Q psy7924 313 ATMIVDRLGRRILL-LVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI 391 (481)
Q Consensus 313 ~g~l~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 391 (481)
.++++||++||+.. ....+...++. .+... ............+...+.. ...+..+....|.+|++.
T Consensus 299 ~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~~----------~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~ 366 (412)
T TIGR02332 299 WSRHSDRLKERKHHTALPYLFAAAGW-LLASA----------TDHNLIQLLGIIMASMGSF-SAMAIFWTTPDQSISLQA 366 (412)
T ss_pred HHHHhcccCccHHHHHHHHHHHHHHH-HHHHh----------cCCHHHHHHHHHHHHHHhh-hhhhHHHhhcccccchHH
Confidence 99999999977643 33333333322 11111 0111111111222222211 112333355568899999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHH
Q psy7924 392 KGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVI 433 (481)
Q Consensus 392 r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 433 (481)
|+++.|+.+..+++|++++|.+.+.+.|..| |...+.+.+++
T Consensus 367 ~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~ 409 (412)
T TIGR02332 367 RAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAAL 409 (412)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHH
Confidence 9999999999999999999999999999875 77777655543
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=249.48 Aligned_cols=385 Identities=13% Similarity=0.050 Sum_probs=241.3
Q ss_pred ccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHh
Q psy7924 4 ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALG 83 (481)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (481)
+.+..++.+|.+.+ ++|+++.+.+++.+.+.+++.+++++.|+++||+|||+++..+.++..++.++.+++++++
T Consensus 35 ~~~~~~~~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~-- 109 (496)
T PRK03893 35 DFVLITLVLTEVQG---EFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYW-- 109 (496)
T ss_pred HHHHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhHHH--
Confidence 34455677888888 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISI 156 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 156 (481)
.+ ++.|++. |++.+...+.... +++|++..+....+. .+|..+++.+
T Consensus 110 ~l----~~~~~l~--G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~ 163 (496)
T PRK03893 110 TL----FIARLVI--GMGMAGEYGSSATYVIESWPKHLRNKASGFLISGF--------------------SIGAVVAAQV 163 (496)
T ss_pred HH----HHHHHHH--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Confidence 88 9999999 9887765444333 577888888888877 7888777776
Q ss_pred hhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHH-
Q psy7924 157 SQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN- 235 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~- 235 (481)
.. ......+||+.|++..+..++.+.....+||++++..++++.++.++..+.....+............
T Consensus 164 ~~---------~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (496)
T PRK03893 164 YS---------LVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIINILLTLAAA 234 (496)
T ss_pred HH---------HHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHHHHHHHHHH
Confidence 62 22246789999988665555444444467888765433222111111111111000000000000000
Q ss_pred ---hhhhhccCccchH-------------H-HhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chh
Q psy7924 236 ---SLEKERSDKVPLM-------------Q-AFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPN 296 (481)
Q Consensus 236 ---~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~ 296 (481)
............. . ..+.+..++.....+................+.|.+. ++.|.+. +.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~~~g 314 (496)
T PRK03893 235 AALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPHTVA 314 (496)
T ss_pred HHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHHHHH
Confidence 0000000000000 0 0000000111111111111111111112334455555 5778877 567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccC
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (481)
.......++.+++.++.++++||+|||+.+..+..+..+..+..... ................+.+.+..
T Consensus 315 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 384 (496)
T PRK03893 315 NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFAI----------GGANVWVLGLLLFFQQMLGQGIS 384 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc----------cccHHHHHHHHHHHHHHHhcccc
Confidence 78888889999999999999999999998887766555544333221 11111111112222122233333
Q ss_pred chhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy7924 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438 (481)
Q Consensus 377 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 438 (481)
+....++.|.+|++.|++++|+.+....+|+.++|.+.|.+.+..|+...+...+..+.+.+
T Consensus 385 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~~~~~~ 446 (496)
T PRK03893 385 GLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVV 446 (496)
T ss_pred hhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHH
Confidence 44457788999999999999999999999999999999999999998877765554444433
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=238.03 Aligned_cols=356 Identities=14% Similarity=0.115 Sum_probs=219.1
Q ss_pred ccCchhhHHHH-----HHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHH------hHhhhhhHH
Q psy7924 23 LVTESDLSFIG-----SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMAL------GAVFGSPVV 91 (481)
Q Consensus 23 ~~~~~~~~~~~-----s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~g~~~~ 91 (481)
+.++. .+++. ++.+++..+++++.|+++||+|||+++..+.+++.++++++++++++.. ..+ ++
T Consensus 56 ~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~ 130 (438)
T PRK09952 56 QVSPA-MGTLAAFATFGVGFLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLL----VT 130 (438)
T ss_pred CCCcH-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH----HH
Confidence 45555 45543 3456677899999999999999999999999999999999999998761 125 88
Q ss_pred HHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhh
Q psy7924 92 GNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQ 164 (481)
Q Consensus 92 ~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 164 (481)
.|+++ |++.|...+.... +++|++..+....+. .+|.+++..+..... .
T Consensus 131 ~R~l~--G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~--------------------~~G~~l~~~~~~~l~--~ 186 (438)
T PRK09952 131 LRAIQ--GFAVGGEWGGAALLAVESAPKNKKAFYSSGVQVGY--------------------GVGLLLSTGLVSLIS--M 186 (438)
T ss_pred HHHHH--HhhhcccHHHHHHHHHHhCCCCCCcHHHHHHHHHH--------------------HHHHHHHHHHHHHHH--H
Confidence 99999 9999887765444 678899888888888 888777765442110 0
Q ss_pred Hh-hccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccC
Q psy7924 165 VI-KERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSD 243 (481)
Q Consensus 165 ~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (481)
.. .......+||+.|++.+++.++...+....||+|+|...+++.++ + ++
T Consensus 187 ~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~~es~~~~~~~~~~~~----------------------------~-~~ 237 (438)
T PRK09952 187 MTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGMEESAEFEQQQHEQAA----------------------------A-KK 237 (438)
T ss_pred hCCHHHhhccChHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHhhccc----------------------------c-cc
Confidence 00 001124689999999888776655555568999876422211000 0 00
Q ss_pred ccchH-HHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCch-hHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy7924 244 KVPLM-QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNP-NLCTIIVGTIMMVTTWIATMIVDRLG 321 (481)
Q Consensus 244 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~g~l~d~~g 321 (481)
+.+.. ..+++++.+. .......+.....+....+.+++..+..|++.+. .......++...++.++.|+++||+|
T Consensus 238 ~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~y~~~~~g~s~~~~~~~~~~~g~~~~i~~~~~g~l~Dr~g 314 (438)
T PRK09952 238 RIPVIEALLRHPGAFL---KIIALRLCELLTMYIVTAFALNYSTQNLGLPRELFLNIGLLVGGLSCLTIPCFAWLADRFG 314 (438)
T ss_pred cCCHHHHHHHchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 11222 2444432222 2222222222222223333344444556766532 23444556677888899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHH
Q psy7924 322 RRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACL 401 (481)
Q Consensus 322 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~ 401 (481)
||+.+..+.++..++.+.+..... . .+..........+.+++.+... +..+++.+|.+|++.|+++.++.+.
T Consensus 315 rr~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~e~~p~~~r~tg~g~~~~ 386 (438)
T PRK09952 315 RRRVYITGALIGTLSAFPFFMALE--A-----QSIFWIVFFSIMLANIAHDMVV-CVQQPMFTEMFGASYRYSGAGVGYQ 386 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH--c-----CChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCcchhHHHHhHHHH
Confidence 999888776655544433322110 0 1111222222233333333323 3345888999999999999999776
Q ss_pred HHH-HHHHHHHhHHHHHHHhhc--CChhHHHHHHHHHHHHHHHHHhccCC
Q psy7924 402 FNW-VSVLVVTKFFGDVTLLLG--GHGAFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 402 ~~~-~g~~~~~~~~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
.+. +++.++|.+.+.+.+..+ |...+...+++.++..+. .+..+|+
T Consensus 387 ~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~ 435 (438)
T PRK09952 387 VASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLMKDN 435 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHcccc
Confidence 655 889999999999988543 555555554444444443 3455553
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=236.29 Aligned_cols=349 Identities=13% Similarity=0.067 Sum_probs=233.5
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
.....+.+|.+.+ |+|.+.++.+++.+.+.+++.+++++.|+++||+|||+++..+..+.+++.++++++++++ .
T Consensus 19 ~~~~~~~l~~~~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~--~ 93 (382)
T PRK10091 19 EFGIMGVLTELAH---DVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTLSSSYL--M 93 (382)
T ss_pred HHHHHhChHHHHH---HcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHHhCcHH--H
Confidence 3455688899999 9999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..+....+. .+|..+++.++
T Consensus 94 l----~~~r~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~g~~l~ 147 (382)
T PRK10091 94 L----AIGRLVS--GFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGM--------------------TVANLLGIPLG 147 (382)
T ss_pred H----HHHHHHH--HhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHH--------------------HHHHHHhccHH
Confidence 9 9999999 9988765443332 456777888777777 77777666655
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
+......+||+.|++.++..++..+..+ .+||.++. .+ ++
T Consensus 148 ---------~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~~----~~-~~------------------------- 188 (382)
T PRK10091 148 ---------TYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRDE----AK-GG------------------------- 188 (382)
T ss_pred ---------HHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCcc----cc-cC-------------------------
Confidence 2222456899999999887766555443 57775410 00 00
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
.+ +..+.++++..+. .................+..+++.+..|.+. ..+.......++.+++.++.++
T Consensus 189 ------~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~ 257 (382)
T PRK10091 189 ------LR-EQFHFLRSPAPWL----IFAATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNLLSGR 257 (382)
T ss_pred ------HH-HHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhHHHhe
Confidence 00 0112344432221 1111111111111222334555555578876 5566778888999999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
+.||+++|+.+..+..+..++.+.+... .+..+.......+.+.+......+.......+..|.+.++.+
T Consensus 258 l~~r~~~~~~~~~~~~~~~i~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (382)
T PRK10091 258 LSGRYSPLRIAAVTDFIIVLALLMLFFF----------GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKGGELLGAA 327 (382)
T ss_pred eccccCchhHHHHHHHHHHHHHHHHHHH----------HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCcchHHHHH
Confidence 9999999998888877776666544331 112222222223333332222222332344455555555544
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHh-hcCChhHHHHHHHHHHHHHHHHHhcc
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLL-LGGHGAFWIFSVIAALGAVFTYILVP 446 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
..+...++|..++|.+.|.+.|. .+|+..+...++++.+.......+.+
T Consensus 328 --~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (382)
T PRK10091 328 --GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSLLLYGR 377 (382)
T ss_pred --HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 34677889999999999999995 57877777776666655555544433
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=235.78 Aligned_cols=343 Identities=16% Similarity=0.179 Sum_probs=230.8
Q ss_pred ccccccccccc-cccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH----
Q psy7924 4 ILGWTSPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS---- 78 (481)
Q Consensus 4 ~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---- 78 (481)
..+...|.+|. +.+ ++|.|+.+.|++.+++.+++.+++++.|+++||+|||+++..+.++.+++.+.+.++.
T Consensus 30 ~~~~~~~~l~~~i~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (399)
T PRK05122 30 TIGLPLAVLPGYVHD---QLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAA 106 (399)
T ss_pred HHHHHHHHHHHHHHH---hcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 34556777886 456 8999999999999999999999999999999999999999999999888877665542
Q ss_pred ----HhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccccccccc
Q psy7924 79 ----SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDH 147 (481)
Q Consensus 79 ----~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (481)
+++ .+ ++.|++. |++.+...+.... +++|+++.+....+. .
T Consensus 107 ~~~~~~~--~l----~~~r~l~--G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~ 158 (399)
T PRK05122 107 WPVLSLL--LL----LLGRLLL--GIGESLAGTGSILWGIGRVGALHTGRVISWNGIAT--------------------Y 158 (399)
T ss_pred cchhHHH--HH----HHHHHHH--HhhHHhhcchHHHHHHhhcChhhhccchhhhhhhh--------------------h
Confidence 344 67 9999999 9998877665433 688899888877777 6
Q ss_pred chhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccch
Q psy7924 148 LAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDID 227 (481)
Q Consensus 148 ~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~ 227 (481)
+|..+++.++. ......+||..+++..+..++........||+++ + +
T Consensus 159 ~g~~~g~~l~~---------~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~------------------- 205 (399)
T PRK05122 159 GALAIGAPLGV---------LLYHWGGLAGLGLLIMLLALLGLLLARPRPAVPP----V-K------------------- 205 (399)
T ss_pred HHHHHHHHHHH---------HHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCCC----C-C-------------------
Confidence 66666666651 1124568999888777665544433333343320 0 0
Q ss_pred HHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHH
Q psy7924 228 SEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMM 307 (481)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 307 (481)
+++.+.++.+++ .+..... .... .. .+.....+.+.+..+.+.+ +.+.......++.+
T Consensus 206 --------------~~~~~~~~~~~~--~~~~~~~-~~~~---~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 263 (399)
T PRK05122 206 --------------GERLPFRRVLGR--VWPYGMG-LALA---SI-GFGTIATFITLYYAARGWD-GAALALTLFGVAFV 263 (399)
T ss_pred --------------ccchhHHHHHHH--HHHHHHH-HHHH---HH-HHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHH
Confidence 000012222221 1111111 1111 11 1122333444444455553 34455566777888
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccC
Q psy7924 308 VTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF 387 (481)
Q Consensus 308 ~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 387 (481)
++.++.+++.||+++|+.+..+..+..++...+... ++.+.......+.+++.+.... .......|..
T Consensus 264 ~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~G~~~~~~~~-~~~~~~~~~~ 331 (399)
T PRK05122 264 GARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA-----------PSPWMALIGAALTGFGFSLVFP-ALGVEAVKRV 331 (399)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHhHHHHHH-HHHHHHHHhC
Confidence 999999999999999998888877777766555442 2223333444445554443333 3235566889
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 388 PSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 388 p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
|++.|+++.|+.+...++|..+++.+.|.+.+..|++..+.+.+++.++..++..+.
T Consensus 332 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (399)
T PRK05122 332 PPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLL 388 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999888888777766665555443
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=240.31 Aligned_cols=373 Identities=16% Similarity=0.163 Sum_probs=245.0
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVF 86 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (481)
..+...|.+.+ ++|.++.+.+++.+++.++..++.++.|+++||+|||+++..+.++..++..+++++++++ .+
T Consensus 12 ~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~- 85 (399)
T TIGR00893 12 NLSFAAPMLQE---DLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYV--SL- 85 (399)
T ss_pred hhhHhHHHHHH---hhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHHcCHH--HH-
Confidence 34566788888 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
+++|++. |++.+...+.... +++|++..+...... .+|..+++.+..
T Consensus 86 ---~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~~- 139 (399)
T TIGR00893 86 ---YILRVLL--GAAEAPFFPGIILIVASWFPASERATAVSIFNSAQ--------------------GLGGIIGGPLVG- 139 (399)
T ss_pred ---HHHHHHH--HHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhc--------------------hHHHHHHHHHHH-
Confidence 9999999 9998876655444 578899999888888 888888877762
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhh
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE 238 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
......+||+.|++.++..++..+... ..||+|+..... +.++..+..+... +..++.+
T Consensus 140 --------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~~~~~~ 199 (399)
T TIGR00893 140 --------WILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAKWL-TEEEKYIVVGGLL-----------AEQQGKG 199 (399)
T ss_pred --------HHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccccC-CHHHHhhcchhhc-----------ccccccc
Confidence 222456799999998888777665555 466665321000 1111000000000 0000111
Q ss_pred hhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHH-hhhcCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy7924 239 KERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI-FKDAGSSL-NPNLCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l 316 (481)
+++.++.+.++.+++++.+. .+......... ......+.|.+ .+..+.+. +.+.......+..+++.++.+++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 274 (399)
T TIGR00893 200 PSTPKKYQIKELLKDRRVWG----LALGQFLVNIG-LGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMILGGRL 274 (399)
T ss_pred ccCCCccchHHHhcCHHHHH----HHHHHHHHHhH-HHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 11222334566777653322 22222222222 23334444444 45567765 55677778888899999999999
Q ss_pred HHHhCChHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 317 VDRLGRRILL-LVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 317 ~d~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
+||++||+.. ........++.+........... .+..+. .......+. ...+..+..+.+..|.+|++.|+++
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~ 348 (399)
T TIGR00893 275 SDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY----VNIPYA-ALALVALGF-FGLGAGAIGWALISDNAPGNIAGLT 348 (399)
T ss_pred HHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc----chhHHH-HHHHHHHHH-hchhhhhHHHHHHHhhcChhHHHHH
Confidence 9999998611 11111111111111111100000 111122 222222222 2223456667889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHHHHH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 442 (481)
.|+.+...+++..++|.+.+.+.+..| +...+.+.+++.++..+...
T Consensus 349 ~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 396 (399)
T TIGR00893 349 GGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSYL 396 (399)
T ss_pred HHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999888 87777777766666555443
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=236.79 Aligned_cols=366 Identities=13% Similarity=0.069 Sum_probs=224.2
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH----HhHHhH
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS----SMALGA 84 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 84 (481)
+..+|.+.+ + |++.++.+++.+++.+++++++++.|+++||+|||+++..+.++.+++.+++++.+ +++ .
T Consensus 49 ~~~~p~l~~---~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~ 122 (452)
T PRK11273 49 ALAMPYLVE---Q-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA--V 122 (452)
T ss_pred HHhhHHHHH---c-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHH--H
Confidence 345677777 7 99999999999999999999999999999999999999999999999998888764 555 6
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhh-hhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAIL-CPISI 156 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~~~~~ 156 (481)
+ ++.|++. |++.+...+.... +++|++..++...+. .+|.. .++..
T Consensus 123 ~----~~~~~l~--gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~l~ 176 (452)
T PRK11273 123 M----FVLLFLC--GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH--------------------NVGGGLPPLLF 176 (452)
T ss_pred H----HHHHHHH--HHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHH--------------------HhhhhHHHHHH
Confidence 6 8889999 8887766543322 577899999887777 66643 33333
Q ss_pred hhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHH
Q psy7924 157 SQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN 235 (481)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 235 (481)
.... . ...+||+.|++.+++.++..++. +++||+|+....+. .++.++ +. + ++ .++
T Consensus 177 ~~~~------~---~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~-------~~-~--~~---~~~ 233 (452)
T PRK11273 177 LLGM------A---WFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPP-IEEYKN-------DY-P--DD---YNE 233 (452)
T ss_pred HHHH------H---HhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCC-hhhhhh-------cc-c--cc---ccc
Confidence 2100 0 23489999999888776654444 46788875421111 111000 00 0 00 000
Q ss_pred hhhhhccCccch-HHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-chhHHHHHHHHHHHHHHHH
Q psy7924 236 SLEKERSDKVPL-MQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-NPNLCTIIVGTIMMVTTWI 312 (481)
Q Consensus 236 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~ 312 (481)
+.+++.+.++.+ +..+|++..+. ......+.... ......+.|.+++ ..|++. +.+.......++.+++.++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~-~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~~ 308 (452)
T PRK11273 234 KHEQELTAKQIFMQYVLPNKLLWY----IAIANVFVYLL-RYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 308 (452)
T ss_pred ccCCCccHHHHHHHHHHcChHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000001111 12445543222 22222222222 2333445555554 467776 5556666777888999999
Q ss_pred HHHHHHHh--CChHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcc
Q psy7924 313 ATMIVDRL--GRRILLL-VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPS 389 (481)
Q Consensus 313 ~g~l~d~~--grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 389 (481)
.|+++||+ +||+... ....+..++.+.+... . ..+.+.........+.... +.......+..|.+|+
T Consensus 309 ~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~~----~-----~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~ 378 (452)
T PRK11273 309 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWLN----P-----AGNPTVDMACMIVIGFLIY-GPVMLIGLHALELAPK 378 (452)
T ss_pred HHHHHHHHccCCcchHHHHHHHHHHHHHHHHHHh----c-----ccChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHcCh
Confidence 99999999 5554322 2222222222222110 0 1111122222222222111 1112223456799999
Q ss_pred cchhhHHHHHHHHHHHHHHH-HHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 390 QIKGIAVSIACLFNWVSVLV-VTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 390 ~~r~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
+.|+++.|+.+...++++.+ +|.+.|.+.|..|++..|.+.+++++++.+....+
T Consensus 379 ~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 434 (452)
T PRK11273 379 KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 434 (452)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765 79999999999999999988887777666555443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.3e-29 Score=234.19 Aligned_cols=374 Identities=16% Similarity=0.124 Sum_probs=220.3
Q ss_pred ccccccccccccCCCCcccCchhhHHHH-HHH-----HHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHH
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIG-SSM-----ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSS 79 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~-----~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~ 79 (481)
...+...|.+.+ |++.++.+.+.+. +.. .++..+++++.|+++||+|||+.++.+..++.+++++++++++
T Consensus 32 ~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~ 108 (434)
T PRK15075 32 FLFGFYATAIAK---TFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIAFVPG 108 (434)
T ss_pred HHHHHHHHHHHH---HhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHhCCc
Confidence 345667788888 9998888765443 332 2233478899999999999999999999999999999999988
Q ss_pred hHH------hHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccc
Q psy7924 80 MAL------GAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSD 146 (481)
Q Consensus 80 ~~~------~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (481)
++. ..+ +++|+++ |++.+...+.... +++|++..++...+.
T Consensus 109 ~~~~~~~~~~~l----~~~R~l~--G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~-------------------- 162 (434)
T PRK15075 109 YATIGLAAPLLV----LLGRLLQ--GFSAGVELGGVSVYLAEIATPGRKGFYTSWQSASQ-------------------- 162 (434)
T ss_pred HHHHHHHHHHHH----HHHHHHh--hccccccHHHHHHHHHhhCCcccchHHHHHHHHHH--------------------
Confidence 761 024 8899999 9998876654433 788999999887776
Q ss_pred cchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccc
Q psy7924 147 HLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDI 226 (481)
Q Consensus 147 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~ 226 (481)
.+|..+++.++..... ..........+||+.|++..+...+........||++++..++
T Consensus 163 ~~g~~~g~~~g~~l~~-~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~~e~~~~~~~~-------------------- 221 (434)
T PRK15075 163 QVAVVFAALLGYLLNQ-WLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSLEETEEFLARK-------------------- 221 (434)
T ss_pred HHHHHHHHHHHHHHHH-hCCHHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhh--------------------
Confidence 5555555544421100 0000111356899999986554333322222345543221000
Q ss_pred hHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHH
Q psy7924 227 DSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGT 304 (481)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~ 304 (481)
++.+.+..+++..+++ +.....+..... ....+.....+.|.+.++ .|++. +.........+
T Consensus 222 ------------~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~p~~l~~~~g~~~~~~~~~~~~~~~ 285 (434)
T PRK15075 222 ------------HRPSMREIFRSLAANW---RIVLAGMLMVAM-TTVSFYLITVYTPTFGKTVLHLSAADSLLVTLCVGV 285 (434)
T ss_pred ------------hccccccHHHHHHHhH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 0000011122222221 222222222222 222344555666666654 68876 44556677778
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhc
Q psy7924 305 IMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVG 384 (481)
Q Consensus 305 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (481)
+.+++.++.|+++||+|||+.+..+..+..+........ ... ............+.+.+.+. ..+..+.+..
T Consensus 286 ~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~ 357 (434)
T PRK15075 286 SNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPALSW--LVA-----APSFARMLAVELWLSFLYGS-YNGAMVVALT 357 (434)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH--HHc-----CCchHHHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 889999999999999999998876654443222111111 001 11111111212222333332 2233346788
Q ss_pred ccCcccchhhHHHHHHHHHHH-HHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCH
Q psy7924 385 EIFPSQIKGIAVSIACLFNWV-SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTL 453 (481)
Q Consensus 385 e~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (481)
|.+|++.|+++.++.+..+.. ++.++|.+.+.+.|..|+.+....+...+.++..+..+..++.++.++
T Consensus 358 e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (434)
T PRK15075 358 EVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTGDKAAPGYWLSFAAVCGLIATLVLYRRRGARL 427 (434)
T ss_pred HHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhccccchhh
Confidence 999999999999997666665 588899999999998886433222222222333333344454444443
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-30 Score=240.66 Aligned_cols=363 Identities=14% Similarity=0.050 Sum_probs=248.0
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH-----HHHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI-----GSSM 80 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-----~~~~ 80 (481)
+...+.+|.+.+ +++.++.+.|++.+.+.++..+++++.|+++||+|||+++..+.++.+++.+..+. .+++
T Consensus 34 ~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (417)
T PRK10489 34 GLLGVAVPVQIQ---MMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSL 110 (417)
T ss_pred HHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcH
Confidence 444566788877 88889999999999999999999999999999999999999988888777665543 3455
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCP 153 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 153 (481)
+ .+ ++.|++. |++.+...+.... +++|++..++..... .+|..++
T Consensus 111 ~--~l----~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~g 162 (417)
T PRK10489 111 L--AI----YLLGLWD--GFFGSLGVTALLAATPALVGRENLMQAGAITMLTV--------------------RLGSVIS 162 (417)
T ss_pred H--HH----HHHHHHH--HHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHH--------------------hHHHHhH
Confidence 6 77 8889998 8776654333222 566788888877777 7777777
Q ss_pred hhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHH
Q psy7924 154 ISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM 233 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (481)
+.++. ......+|++.+++.++..++..+..+.+||+++.. +++ ++ .
T Consensus 163 ~~l~g---------~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~-~~-----------------~---- 209 (417)
T PRK10489 163 PALGG---------LLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPPPP--QPR-EH-----------------P---- 209 (417)
T ss_pred HHHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--ccc-cc-----------------c----
Confidence 77662 222456899999888877776666666677764210 000 00 0
Q ss_pred HHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHH
Q psy7924 234 QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTW 311 (481)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~ 311 (481)
.++.++.++..+++|..+...+..+ ... . ......+.|.+.++ .|.+. ..+.......++.+++.+
T Consensus 210 ------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~--~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~ 277 (417)
T PRK10489 210 ------LRSLLAGFRFLLASPVVGGIALLGG-LLT---M--ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGAALGAL 277 (417)
T ss_pred ------hHHHHHHHHHHHcChHHHHHHHHHH-HHH---H--HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHHHHHHH
Confidence 0000112344555553322222211 111 1 12233344555555 77776 556677778888999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc
Q psy7924 312 IATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI 391 (481)
Q Consensus 312 ~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 391 (481)
+.+++.||.++++.+..+..+..++.+.+.. .++.+...+...+++.+.+. ..+...+++.|..|++.
T Consensus 278 ~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~p~~~ 345 (417)
T PRK10489 278 TSGWLAHSARPGLLMLLSTLGSFLAVGLFGL-----------MPMWILAVLCLALFGYLSAI-SSLLQYTLLQTQTPDEM 345 (417)
T ss_pred HHHHhhhccCcchHHHHHHHHHHHHHHHHHc-----------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhCCHHH
Confidence 9999999987777777777766666555433 12222333333344433332 22344477889999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHHHH
Q psy7924 392 KGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDEI 456 (481)
Q Consensus 392 r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
|+++.|+.+...++|..++|.+.|.+.+..|+...+...+++..+.+++.....+++|+++++|.
T Consensus 346 ~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 410 (417)
T PRK10489 346 LGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPP 410 (417)
T ss_pred HHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999998888888888877777777777788777665543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=239.11 Aligned_cols=361 Identities=12% Similarity=0.029 Sum_probs=218.8
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
..|.+|.+.+ |+|++.++.+++.+.+.+++.+++++.|+++||+|||+++..+.++++++.+++++++++. .+
T Consensus 55 ~~~~~~~l~~---~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~--~l-- 127 (476)
T PLN00028 55 AAPLLPIIRD---NLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLVSSAT--GF-- 127 (476)
T ss_pred HHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHhcCHH--HH--
Confidence 3567788888 9999999999999999999999999999999999999999999999999999999999988 88
Q ss_pred hhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
++.|++. |++.+...+.... +++|+++.++..... .+|..++..+....
T Consensus 128 --~~~r~l~--G~~~~~~~~~~~~i~~~~~~~~rg~a~g~~~~~~--------------------~~g~~~~~~~~~~i- 182 (476)
T PLN00028 128 --IAVRFFI--GFSLATFVSCQYWMSTMFNGKIVGTANGIAAGWG--------------------NLGGGVTQLLMPLV- 182 (476)
T ss_pred --HHHHHHH--HHHHHhhHHHHHHHHHhcChhheeHHHHHHHHHH--------------------HHHHHHHHHHHHHH-
Confidence 8899999 8877653322111 568899988876655 55555544433110
Q ss_pred hhhHhhc-cchhhHHHHHHHHhhHHHHHHHHHHhccC-CChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 162 LAQVIKE-RKFEASVYGLSIICALLPIFFVGLMLLMP-ESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 162 ~~~~~~~-~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
....... .....+||+.|++.+++.++..+..++++ +.|+ ++.++.++ +...+
T Consensus 183 ~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~~--------------------~~~~~ 237 (476)
T PLN00028 183 FPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELKK--------------------SGTMP 237 (476)
T ss_pred HHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHHh--------------------cCccc
Confidence 0000000 11235899999999988877766666544 3331 11000000 00000
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD 318 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d 318 (481)
++.....+++.+++++.+. ............+....+.++++.++.|++. +.+....+..++..+++++.|+++|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~ig~~~~G~lsD 313 (476)
T PLN00028 238 KDSFSKVLRYGVTNYRTWI----LALTYGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASFGLMNLFARPAGGYLSD 313 (476)
T ss_pred cccHHHHHHHHHcCchhHH----HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0000112445566653322 1111111111111222233344445568886 5667788888999999999999999
Q ss_pred HhCChH-------HHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc
Q psy7924 319 RLGRRI-------LLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI 391 (481)
Q Consensus 319 ~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 391 (481)
|++||+ .......+.++..+.+.. ..+.+......++++.+...... ..+.+..+..| +.
T Consensus 314 r~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~-~~ 380 (476)
T PLN00028 314 VAARRFGMRGRLWALWIVQTLGGVFCIWLGR-----------ANSLGAAIVVMILFSIFVQAACG-ATFGIVPFVSR-RS 380 (476)
T ss_pred HHHHhcCcchhHHHHHHHHHHHHHHHHHhcc-----------cchHHHHHHHHHHHHHHHHHhhh-hhcccCcccCh-hh
Confidence 998652 222222222222222111 11122222233333333332222 23455666655 68
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy7924 392 KGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYI 443 (481)
Q Consensus 392 r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (481)
++++.|+.+..+++|+.++|.+.+ ..+..+|+..|.+.+++.+++.++.++
T Consensus 381 ~g~~~g~~~~~g~lg~~i~~~l~~-~~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 381 LGVISGLTGAGGNVGAVLTQLLFF-TGSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred chhhhhhhhccccHHHHHHHHHHH-hcCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 999999998888888888776654 112335777888777666666555433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.7e-29 Score=230.11 Aligned_cols=342 Identities=16% Similarity=0.126 Sum_probs=227.9
Q ss_pred cccccccccc-cccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH-------
Q psy7924 5 LGWTSPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI------- 76 (481)
Q Consensus 5 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~------- 76 (481)
.+...|.+|. +.+ |+|.|.++.|++.+++.+++.+++++.|+++||+||||++..+.+...++.+....
T Consensus 31 ~~~~~p~l~~~l~~---~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 107 (392)
T PRK12382 31 VGLPLPVIPLFVHH---DLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS 107 (392)
T ss_pred HHHHhhhhhHHHHH---hcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 3455677775 457 89999999999999999999999999999999999999999988877766543322
Q ss_pred -HHHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccc
Q psy7924 77 -GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHL 148 (481)
Q Consensus 77 -~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (481)
.++++ .+ +++|+++ |++.+...+.... +++|+++.+..+.+. ..
T Consensus 108 ~~~~~~--~l----~~~r~l~--G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~--------------------~~ 159 (392)
T PRK12382 108 APFKFA--LL----VVGRLIL--GFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAM--------------------YG 159 (392)
T ss_pred hhHHHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHH--------------------HH
Confidence 34666 78 9999999 9988765543322 788999999988887 77
Q ss_pred hhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchH
Q psy7924 149 AILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDS 228 (481)
Q Consensus 149 G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~ 228 (481)
|..+++.++. ......+||+.+.+..+..++........||.++. +
T Consensus 160 g~~~g~~~~~---------~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-------------------- 205 (392)
T PRK12382 160 ALAAGAPLGL---------LLHSHFGFAALALTTMVLPLLAWAFNGTVRKVPAH-----A-------------------- 205 (392)
T ss_pred HHHHHHHHHH---------HHHhccChHHHHHHHHHHHHHHHHHHHhccCCCCC-----c--------------------
Confidence 7777766651 11245689988776655544433332233443210 0
Q ss_pred HHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHH
Q psy7924 229 EITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMV 308 (481)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 308 (481)
+++.+.++.++. .++......... ........+.+.+.++.+.+ +.+.......++.++
T Consensus 206 -------------~~~~~~~~~~~~--~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 264 (392)
T PRK12382 206 -------------GERPSLWSVVGL--IWKPGLGLALQG-----VGFAVIGTFVSLYFASKGWA-MAGFTLTAFGGAFVL 264 (392)
T ss_pred -------------ccCchHHHHHHH--HHHhHHHHHHHH-----HHHhHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHH
Confidence 000011222211 111111111111 11222333444455555554 334455556677788
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc
Q psy7924 309 TTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388 (481)
Q Consensus 309 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 388 (481)
++++.+++.||+|+|+.+..+..+..++.+..... ++.+.......+.+.+.+.... .......|.+|
T Consensus 265 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~ 332 (392)
T PRK12382 265 MRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWLA-----------PTAWVALAGAALTGAGCSLIFP-ALGVEVVKRVP 332 (392)
T ss_pred HHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHHc-----------ccHHHHHHHHHHHHHHHHhHHH-HHHHHHHHhcC
Confidence 99999999999999998888877777766554431 1223333334444444443333 33356678899
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 389 SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 389 ~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
+++|+++.|+.+...+++..++|.+.+.+.|..||+..+.+.+++.++..++....
T Consensus 333 ~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 333 SQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999988887777666655444
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.9e-30 Score=238.96 Aligned_cols=363 Identities=15% Similarity=0.107 Sum_probs=228.5
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGS 88 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 88 (481)
+..+|.+.+ ++|.+.++.+++.+.+.++..++.++.|+++||+|||++++.+.++..+++++++++++++ .+
T Consensus 39 ~~~~~~i~~---~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~l--- 110 (455)
T TIGR00892 39 TVFFKELQQ---IFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVI--EL--- 110 (455)
T ss_pred hhhHHHHHH---HhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHhhhHH--HH---
Confidence 345677888 9999999999999999999999999999999999999999999999999999999999988 76
Q ss_pred hHH-HHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 89 PVV-GNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 89 ~~~-~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
++ .|++. |++.+...+.... +++|+++.++...+. .+|..+++.+.
T Consensus 111 -~~~~~~l~--G~~~~~~~~~~~~~~~~~~~~~r~~a~g~~~~~~--------------------~~g~~~~~~l~---- 163 (455)
T TIGR00892 111 -YLTAGFIT--GLGLAFNFQPSLTMLGKYFYRRRPLANGLAMAGS--------------------PVFLSTLAPLN---- 163 (455)
T ss_pred -HHHHHHHH--HhcchhhhhHHHHHHHHHHHhhHHHHHHHHHhcc--------------------cHHHHHHHHHH----
Confidence 54 57898 8888754332222 678899988888887 77777666655
Q ss_pred hhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhcc-CCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhh
Q psy7924 162 LAQVIKERKFEASVYGLSIICALLPIFFVGLMLLM-PESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240 (481)
Q Consensus 162 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
+......+||+.|++.+++.++..+..+++ ++.+.. .+.+.++ .+ .....+ ..++ .+.....+
T Consensus 164 -----~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~~---~~~~~~--~~~~---~~~~~~~~ 227 (455)
T TIGR00892 164 -----QYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-KE---GLPPDG--STKK---LSKKSTAE 227 (455)
T ss_pred -----HHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-cc---cCCCCC--cccc---ccccchhh
Confidence 222256689999999998877655544433 322211 0000000 00 000000 0000 00000000
Q ss_pred ccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 241 RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR 319 (481)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~ 319 (481)
+..+....+.+++|.++... ...+..... ......+.+.+.++.|++. +.+....+.+++.++++++.+++.||
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~-~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~ 302 (455)
T TIGR00892 228 KINRFLDFSLFTHRGFLVYL----SGNVIMFLG-FFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARPSCGLIAGL 302 (455)
T ss_pred hhhhhcchHHhcCchHHHHH----HHHHHHHHH-ccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 00000112456665433222 122222222 2333344455556678876 55677777888889999999999997
Q ss_pred h--CChHHHHHHH--HHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 320 L--GRRILLLVSA--VIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 320 ~--grr~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
. ++|+...... +..+++.+.... .++.+...+...+.+++.+... +.....+.|.+|++.++++
T Consensus 303 ~~~~~~~~~~~~~~~~~~~l~~ll~~~-----------~~~~~~~~i~~~~~G~~~g~~~-~~~~~~~~~~~~~~~~g~~ 370 (455)
T TIGR00892 303 KWIRPHVQYLFSFALLFNGLTHLLCAL-----------AGDYTGLVIYCIFFGLSFGSVG-ALLFEVLMDLVGAQRFSSA 370 (455)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHH-----------hchHHHHHHHHHHHHHHhchHH-HHHHHHHHHHhhHHHHhhH
Confidence 4 3343333322 222222222211 1222333444444544443333 3445777899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAV 439 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~ 439 (481)
.|+.+...++|..++|.+.|.+.+..+ |+..|.+.+++.++..+
T Consensus 371 ~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 371 VGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 999999999999999999999998874 87888777766655444
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-28 Score=224.86 Aligned_cols=338 Identities=14% Similarity=0.118 Sum_probs=233.0
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGS 88 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 88 (481)
.+.+|.+.+ |+|.++++.++..+.+.++..+++++.|+++||+|||+++..+.++.+++.+++.++++++ .+
T Consensus 40 ~~~l~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~l--- 111 (394)
T PRK10213 40 VSLLTPMAQ---DLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFANSFS--LL--- 111 (394)
T ss_pred HhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHChHH--HH---
Confidence 346778888 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 89 PVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 89 ~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
++.|++. |++.+...+.... +++|+++.+....+. .+|..+++.++
T Consensus 112 -~~~r~l~--G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~--------------------~~g~~ig~~l~---- 164 (394)
T PRK10213 112 -LIGRACL--GLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAV--------------------SIALVIAAPLG---- 164 (394)
T ss_pred -HHHHHHH--HHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHH--------------------HHHHHHHHHHH----
Confidence 9999999 9998876655544 677899998888887 77777777777
Q ss_pred hhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhh
Q psy7924 162 LAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240 (481)
Q Consensus 162 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
.......+||+.|++.+++.++..+... ..||+|+. +
T Consensus 165 -----~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-------------------------------- 202 (394)
T PRK10213 165 -----SFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-------------------------------- 202 (394)
T ss_pred -----HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c--------------------------------
Confidence 2222567899999998877766554443 46775411 0
Q ss_pred ccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 241 RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR 319 (481)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~ 319 (481)
++...+.++.+++|..+..... ..... ...+....+..|.+.++.|++. +.+......+++.+++.++.+++.||
T Consensus 203 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~---~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~~~~~l~~r 278 (394)
T PRK10213 203 SHQKQNTFRLLQRPGVMAGMIA-IFMSF---AGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTSLSSFILKR 278 (394)
T ss_pred ccchhHHHHHhcCHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 0001123456666543332221 11111 1112223344577777778887 45667777888899999999999999
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHH
Q psy7924 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399 (481)
Q Consensus 320 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 399 (481)
.+ |+.+..+..+.......+... .+..+.......+.+++++...... .+++.+..| +.+++..+..
T Consensus 279 ~~-~~~l~~~~~~~~~~~~~l~~~----------~~~~~~~~~~~~l~G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~ 345 (394)
T PRK10213 279 SV-KLALAGAPLVLAVSALVLTLW----------GSDKIVATGVAIIWGLTFALVPVGW-STWITRSLA-DQAEKAGSIQ 345 (394)
T ss_pred cc-hhHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHHHHhhhHHH-HHHHHHHCc-ccHHHHHHHH
Confidence 54 444443433333332222221 1223334444455555554433333 356667777 4466777777
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q psy7924 400 CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVF 440 (481)
Q Consensus 400 ~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 440 (481)
....++|..+++.+.|.+.|..|++..+...+.+..+..+.
T Consensus 346 ~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~ 386 (394)
T PRK10213 346 VAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTALL 386 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHHH
Confidence 88889999999999999999988877776666555544443
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=238.94 Aligned_cols=358 Identities=12% Similarity=0.030 Sum_probs=242.7
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVF 86 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (481)
..+.++|.+.+ |+|.+.++.+|+.+.|.++.+++.++.|+++||+|||++++.+..++.++++++++++|++ .+
T Consensus 24 iv~~a~p~i~~---~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~--~l- 97 (495)
T PRK14995 24 VLHVAAPTLSM---TLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSPTAS--WL- 97 (495)
T ss_pred HHHHHHHHHHH---HhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHH--HH-
Confidence 34667899999 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhHHHHhhccccccceeeeeeccc--------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS--------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
+++|+++ |++.+...+.... +++|++..++..... .+|..+++.++
T Consensus 98 ---i~~r~l~--G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~--------------------~~g~~~gp~lg- 151 (495)
T PRK14995 98 ---IATRALL--AIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVG--------------------SGGAAFGPLVG- 151 (495)
T ss_pred ---HHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH-
Confidence 9999999 9988776553321 478899999988888 88888888777
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHH---------HHHhCCCccc-h
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESL---------QWFRGSEYDI-D 227 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~---------~~~~~~~~~~-~ 227 (481)
+...+..+||+.|++...+.++..++.. ++||+|+.. +++.|...... ..+....... .
T Consensus 152 --------g~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~~--~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~~~ 221 (495)
T PRK14995 152 --------GILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGRR--DQPLNLGHALMLIVAILLLVYSAKTALKGFLS 221 (495)
T ss_pred --------HHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CCCCChHhHHHHHHHHHHHHHHHHhccccCCc
Confidence 3333667999999998877776655544 578765321 11111111100 0000000000 0
Q ss_pred H--HHH-------HH--HHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-c
Q psy7924 228 S--EIT-------DM--QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-N 294 (481)
Q Consensus 228 ~--~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~ 294 (481)
. ... .. -...+.+.+.+.-..+.+|++.+....... +..... .....++.|.++ ...|+++ +
T Consensus 222 ~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~lq~v~g~s~~~ 296 (495)
T PRK14995 222 LWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMA----MTAMIT-LVGFELLMAQELQFVHGLSPLE 296 (495)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHH----HHHHHH-HHHHHHHHHHHHHHHcCCCHHH
Confidence 0 000 00 000111111111124577775433222222 222111 223334445444 4478887 6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhc
Q psy7924 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
.+.......+...++.++.|++.||+|+|+.+..+..+..++...+... .. ....+.......+.+++.+..
T Consensus 297 ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~-----~~~~~~~~~~~~l~G~g~g~~ 368 (495)
T PRK14995 297 AGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DF-----STQQWQAWGLMALLGFSAASA 368 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cC-----CCchHHHHHHHHHHHHhHHHH
Confidence 7788888889999999999999999999998888877777666554332 10 112233334445555555554
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL 420 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 420 (481)
..+.. ....+..|+++++.+.++.+...++|+.+++.+.+.+.+.
T Consensus 369 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 369 LLAST-SAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred HHHHH-HHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444 5666889999999999999999999999999999988764
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=230.64 Aligned_cols=354 Identities=16% Similarity=0.142 Sum_probs=236.1
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAV 85 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (481)
....+..|.+.+ ++|.++.+.+++.+.+.++..++.++.|+++||+|||+.+..+.++..++.++..++++++ .+
T Consensus 34 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 108 (398)
T TIGR00895 34 AAMGFAAPAISA---EWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALATNVT--QL 108 (398)
T ss_pred HHHHhhHHHHhh---ccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHccchH--HH
Confidence 344567788888 9999999999999999999999999999999999999999999999999999999999988 88
Q ss_pred hhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
++.|++. |++.+...+.... +++|++..+....+. .+|..+++.+.
T Consensus 109 ----~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~- 161 (398)
T TIGR00895 109 ----LILRFLA--GLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGY--------------------PIGAAVGGFLA- 161 (398)
T ss_pred ----HHHHHHH--hcccccchhhHHHHHHHHcCHHhhchhHhhHhhHH--------------------HHHHHHHHHHH-
Confidence 9999999 9988877665544 567899999888888 78877777666
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHH-HhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGL-MLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
+......+||+.+++.++..++..+. ..++||+|++...+ +.++..+..++......+..++ +.+++.
T Consensus 162 --------~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 230 (398)
T TIGR00895 162 --------GWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQS--ALPEQK 230 (398)
T ss_pred --------HHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhccccccc--cccccc
Confidence 22224568999999886555554444 44689998776554 3333333333322111110000 000000
Q ss_pred hhhccCccchHH-HhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQ-AFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
.+++...+..+ .++++ ..+.......... ...........+.|++.++.+.+. +.+.......++.+++.++.++
T Consensus 231 -~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (398)
T TIGR00895 231 -ATQGTKRSVFKALFQGK-TARITVLLWLLYF-MLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSIIFGW 307 (398)
T ss_pred -cccchhhHHHHHHhcch-hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00011112222 33332 2232222222222 222233445556677777788876 5566777888899999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
++||++||+.... ..+..+....+... ..+.+......++.+.+.+... +...++..|.+|++.|+++
T Consensus 308 l~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~g~~ 375 (398)
T TIGR00895 308 LADRLGPRVTALL-LLLGAVFAVLVGST----------LFSPTLLLLLGAIAGFFVNGGQ-SGLYALMALFYPTAIRATG 375 (398)
T ss_pred HHhhcchHHHHHH-HHHHHHHHHHHHHH----------hhCHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcCCHHHHHHH
Confidence 9999999854443 33333332222221 1122233344444555544444 3445888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDV 417 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~ 417 (481)
.|+.+....++..++|.+.|.+
T Consensus 376 ~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 376 VGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999998864
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.6e-28 Score=221.81 Aligned_cols=338 Identities=13% Similarity=0.067 Sum_probs=229.0
Q ss_pred cccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHH
Q psy7924 3 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMAL 82 (481)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
+..+...|.+|.+.+ ++|.|+.+.|++.+.+.++..+++++.|+++||+|||+++..+.++..++...++++++++
T Consensus 20 ~~~~~~~~~lp~~~~---~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~- 95 (381)
T PRK03633 20 LAIAVLNTLVPLWLA---QEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFW- 95 (381)
T ss_pred HhhhhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH-
Confidence 456677889999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 83 GAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 83 ~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
.+ ++.|++. |++.+...+.... +++|++..+....+. .+|..+++.
T Consensus 96 -~l----~~~~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~g~~ 148 (381)
T PRK03633 96 -SW----LAWRFVA--GIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVY--------------------YLGTVLGQL 148 (381)
T ss_pred -HH----HHHHHHH--HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--------------------HHHHHHHHH
Confidence 99 9999999 9988776544321 667899999888888 888888877
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (481)
+..... ........|+..+. ........+ ..+|+++
T Consensus 149 ~~~~l~-----~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--------------------------------- 185 (381)
T PRK03633 149 LVSKVS-----TELMSVLPWVTGLV-----LAAILPLLFTRILNQQA--------------------------------- 185 (381)
T ss_pred HHhccc-----ccccchHHHHHHHH-----HHHHHHHHHhcccCCCC---------------------------------
Confidence 762110 00001223433221 111111111 2222110
Q ss_pred HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHH
Q psy7924 235 NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIA 313 (481)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 313 (481)
+++++.+.++.++++..+.... .+..... .+.....+.|.+.++.|.+. ..+.......+..++++++.
T Consensus 186 -----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 255 (381)
T PRK03633 186 -----ENHDSTSIWPMLKLRQARLGVN-GCIISGI----VLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPI 255 (381)
T ss_pred -----CCCCCCCHHHHHHhcchHHHHH-HHHHHHH----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 0001123455666654332111 1111111 12233345666666677776 44566677778889999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchh
Q psy7924 314 TMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKG 393 (481)
Q Consensus 314 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 393 (481)
+++.||+++|+.+..+.....++...... . ........+.+.+.. ...+.....+.|..|+++++
T Consensus 256 g~l~dr~~~~~~l~~~~~~~~~~~~~~~~-----------~---~~~~~~~~l~g~~~~-~~~p~~~~~~~~~~~~~~~~ 320 (381)
T PRK03633 256 GRLADRFGRLLVLRVQVFVVILGSIAMLS-----------Q---AAMAPALFILGAAGF-TLYPVAMAWACEKVEHHELV 320 (381)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHhh-----------h---HHHHHHHHHHHHHHH-hHHHHHHHHHHccCCHHHHH
Confidence 99999999999888777776665543321 0 111112222332222 22344456777889888888
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHH
Q psy7924 394 IAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV 439 (481)
Q Consensus 394 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 439 (481)
...+..+...++|..++|.+.|.+.|+.++...|.+.+.+.++..+
T Consensus 321 ~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~ 366 (381)
T PRK03633 321 AMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLL 366 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 8888888889999999999999999999998888877766655443
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=223.11 Aligned_cols=348 Identities=12% Similarity=0.097 Sum_probs=222.6
Q ss_pred cccccccccccccc-ccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhh-hhhhHHHHhHHHHHHHH
Q psy7924 2 GTILGWTSPAGDRL-IAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL-LAVPTVTESDLSFIGSS 79 (481)
Q Consensus 2 g~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~-~~~~~~~~~~~~~~~~~ 79 (481)
++..+...|.+|.. .+ ++|.++.+.|++.+.+.+...+.+++.|+++||+||||.++. +..+..++.++++++++
T Consensus 10 ~~~~~~~~~~l~~~l~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~ 86 (375)
T TIGR00899 10 GIAGALQFPTLSLFLSE---EVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAWNRN 86 (375)
T ss_pred HHHHHHHhhHHHHHHHc---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHhcch
Confidence 34456677888864 56 899999999999999999999999999999999999887654 56666677788888999
Q ss_pred hHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccch--hhhhhHHHHHHHhhhccccccccccccccchh
Q psy7924 80 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLL--GETSQVTVWVLISTTNRRISDKCFVGSDHLAI 150 (481)
Q Consensus 80 ~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 150 (481)
++ .+ ++.|++. |...+...+.... ++.|... .+....+. .+|.
T Consensus 87 ~~--~l----~~~~~~~--g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~ 138 (375)
T TIGR00899 87 YF--LL----LVLGVLL--SSFASTANPQLFALAREHADRTGREAVMFSSVMRAQI--------------------SLAW 138 (375)
T ss_pred HH--HH----HHHHHHH--HhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHH--------------------hHHH
Confidence 88 88 8888888 7665544443322 2222221 34444444 5666
Q ss_pred hhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHH
Q psy7924 151 LCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSE 229 (481)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~ 229 (481)
.+++.++ +...+..+||+.|++.++..++..+..+ ++||+|+...++
T Consensus 139 ~ig~~~~---------~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------- 186 (375)
T TIGR00899 139 VIGPPLA---------FWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGA----------------------- 186 (375)
T ss_pred HHhhhHH---------HHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCcccc-----------------------
Confidence 6666555 2222556899999999888776665554 488876321000
Q ss_pred HHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHH
Q psy7924 230 ITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMV 308 (481)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~ 308 (481)
+++.+.++.++++..+.... ......... .......+.++.++.|.+. +.+...........+
T Consensus 187 ------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T TIGR00899 187 ------------LTRLEVRGLLASRDTRLLFV-ACTLMWGCN---ILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIP 250 (375)
T ss_pred ------------cCcchhhhhhcCcchHHHHH-HHHHHHHHH---HHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00011223444443322222 111111111 1112223334445667776 445555555566778
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc
Q psy7924 309 TTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388 (481)
Q Consensus 309 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 388 (481)
+.++.+++.||+|||+.+..+.+...+....... .++.+.......+.+.+.+... +....+..|..|
T Consensus 251 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~g~~~g~~~-~~~~~~~~~~~~ 318 (375)
T TIGR00899 251 FMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA-----------DNSLWALLMLQLLNAIFIGILA-GIGMLYFQDLMP 318 (375)
T ss_pred HHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCc
Confidence 8899999999999999887776655444333322 1122333333333444434333 344467778888
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy7924 389 SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 389 ~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
++ ++++.++.+...++|..++|.+.+.+.+..|++..+.+.+++.++..++.
T Consensus 319 ~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 319 GR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred ch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 64 67999999999999999999999999999999888887777666555544
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=223.73 Aligned_cols=343 Identities=13% Similarity=0.014 Sum_probs=228.2
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVF 86 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (481)
...+.+|.+.+ ++|+|+++.+++.+.+.+++.+++++.|++.||+|||+++..+.++.+++.++++++++++ .+
T Consensus 25 ~~g~~~~~i~~---~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~--~~- 98 (394)
T PRK03699 25 VTGMVMGPIAE---YFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLA--LF- 98 (394)
T ss_pred HHhhhhHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcchHH--HH-
Confidence 34667888888 9999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred hhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
++.|++. |++.+...+.... +++|+...+...... .+|..+++.+...
T Consensus 99 ---~~~~~l~--G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~~~ 153 (394)
T PRK03699 99 ---SIAMFVL--GVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFF--------------------SMAGMIFPIIAAY 153 (394)
T ss_pred ---HHHHHHH--HHhhHhhccchhHHhhhhcccchHHHHHHHHHHHH--------------------HHHHHHHHHHHHH
Confidence 9999999 8887766544333 456777777666665 5665555544410
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
. .....+||+.|.+.+++.++..+..++ .+.|+. ++.+. ++
T Consensus 154 l--------~~~~~gw~~~f~~~~~~~~~~~~~~~~-~~~p~~--~~~~~----------------------------~~ 194 (394)
T PRK03699 154 L--------LARSIEWYWVYACIGLVYVAIFILTLF-SEFPAL--GKHAP----------------------------KA 194 (394)
T ss_pred H--------HhccccHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccCc----------------------------cc
Confidence 0 013468999999888877665544433 222210 00000 00
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCTIIVGTIMMVTTWIATMIV 317 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~ 317 (481)
+++ ..++.. + +..+......+.. .........+.|.+. ++.|++. +.+.......++..+++++.++++
T Consensus 195 ~~~---~~~~~~-~----~~~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~l~ 265 (394)
T PRK03699 195 DKP---VAKEKW-G----IGVLFLAIAALLY-ILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGMWIFSFIV 265 (394)
T ss_pred cCc---cccccC-C----hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000001 1 1122222122222 122233445556555 5578877 556677777888999999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHH
Q psy7924 318 DRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397 (481)
Q Consensus 318 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 397 (481)
||++||+.+.....+..+....+.. .++........+..+.+.+..+ +....+..|..|. .+++..+
T Consensus 266 dr~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~G~~~~~~~-~~~~~~~~~~~~~-~~~~~~g 332 (394)
T PRK03699 266 RFFDLQRILTVLAGLALVLMYLFVN-----------TDDPSHLLYAILGLGFFSSAIY-TTIITLGSQQTKV-ASPKLVN 332 (394)
T ss_pred HHhchhhHHHHHHHHHHHHHHHHHH-----------cCCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHccC-CCHHHHH
Confidence 9999999887766655554433322 1122222333333443333222 3333556676664 4577888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy7924 398 IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 398 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
......++|..++|.+.|.+.+..|++..++..+++..++.+.+
T Consensus 333 ~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~ 376 (394)
T PRK03699 333 FILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMC 376 (394)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999888887777766665544
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=227.82 Aligned_cols=354 Identities=14% Similarity=0.058 Sum_probs=225.8
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
.++.+|.+.+ ++|.+.++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.++.+++++++ .+
T Consensus 14 ~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 86 (379)
T TIGR00881 14 FALAMPYLVE---EIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLW--VM-- 86 (379)
T ss_pred hhhhhHHHHH---HhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHhhhHH--HH--
Confidence 3556788888 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh-hhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS-ISQS 159 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~-~~~~ 159 (481)
++.|++. |++.+...+.... +++|++..+....+. .+|..+++. +..
T Consensus 87 --~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~~~- 141 (379)
T TIGR00881 87 --AALWALN--GIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSH--------------------NVGGGLLPPLVLF- 141 (379)
T ss_pred --HHHHHHH--HhhccccCCchHHHHHHhcCHhhheeeEeehhccc--------------------hhHHHHHHHHHHH-
Confidence 9999999 9988877666554 567888888888887 788777773 331
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhh
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE 238 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
......+||+.+++.+++.++..+..+ +.||+|+....+.++++ . +.+.+.+ .+++.+
T Consensus 142 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~-~~~~~~ 200 (379)
T TIGR00881 142 --------GIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM-----------P-NEEPDGD-AEKKEE 200 (379)
T ss_pred --------HHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccC-----------c-ccccccc-cccccc
Confidence 111456899999988877766555444 57777642111000000 0 0000000 000000
Q ss_pred hhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHH-HhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy7924 239 KERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK-IFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l 316 (481)
+.+..+...++.++++..+...+ ........ ......+.|. +.+..|.+. +.+.......+..+++.++.+++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l 275 (379)
T TIGR00881 201 ELTKKQIFLQYVLLNKVLWYISL----GYVFVYVV-RTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGTLLAGWL 275 (379)
T ss_pred cccchHHHHHHHHhcchHHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhHHHHHHH
Confidence 00111123445566653332211 11111111 2233334444 445568776 55677778888899999999999
Q ss_pred HHHhCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 317 VDRLGR-RILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 317 ~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
.||..+ |+... ...........+....... ..+...........+.. ..+..+....+..|.+|++.|+++
T Consensus 276 ~~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~g~~ 347 (379)
T TIGR00881 276 SDKLFNGRRGPL-AVFFMALIIVSLLVYWLNP------AANPLMDLICLFALGFL-VYGPQMLIGVIASELAPKKAAGTA 347 (379)
T ss_pred HHHHcCCcchHH-HHHHHHHHHHHHHHHhcCc------chhHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhcCcchhHHH
Confidence 998643 33222 1111111111111110000 11112222222223222 222333344677899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCChhH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLGGHGAF 427 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 427 (481)
.|+.+...++++.++|.+.|.+.|..||+..|
T Consensus 348 ~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f 379 (379)
T TIGR00881 348 AGFVGFFAYLGGILAGLPLGYLADGFGWAGAF 379 (379)
T ss_pred HHHHHHhhhhhhhhhhhhHHHHHHhhcccccC
Confidence 99999999999999999999999999987653
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=225.62 Aligned_cols=352 Identities=13% Similarity=0.063 Sum_probs=233.7
Q ss_pred ccccccccccccccCCCCcccCchh-----hHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH
Q psy7924 4 ILGWTSPAGDRLIAGEYPFLVTESD-----LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS 78 (481)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~ 78 (481)
..+...|.+|.+.+ ++|.+..+ .+++.+++.++..+++++.|+++||+|||+++..+.++..++.+++.+++
T Consensus 29 ~~~~~~~~l~~~~~---~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~ 105 (408)
T PRK09874 29 AFSLVMPFLPLYVE---QLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLAQ 105 (408)
T ss_pred HHHHhhhhHHHHHH---HhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456778888888 88888655 48999999999999999999999999999999999999999999998989
Q ss_pred HhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhh
Q psy7924 79 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAIL 151 (481)
Q Consensus 79 ~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 151 (481)
+++ .+ ++.|++. |++.+.. +.... +++|++..+....+. .+|..
T Consensus 106 ~~~--~~----~~~~~~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~ 156 (408)
T PRK09874 106 NIW--QF----LILRALL--GLLGGFV-PNANALIATQVPRNKSGWALGTLSTGG--------------------VSGAL 156 (408)
T ss_pred hHH--HH----HHHHHHH--HHhhhhH-HhHHHHHHHhcCHhhhhHHHHHHHHHH--------------------HHHHH
Confidence 988 88 9999999 8875532 22211 577888888887777 77777
Q ss_pred hhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHH
Q psy7924 152 CPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEI 230 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (481)
+++.+. +...+..+||+.+++.++..++..+..+ ++||.++.. .+ ++ .
T Consensus 157 ~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~------------------~ 205 (408)
T PRK09874 157 LGPLAG---------GLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SK-KE------------------M 205 (408)
T ss_pred HHHHHH---------HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cc-hh------------------h
Confidence 777666 2222456899999998887766655544 466653110 00 00 0
Q ss_pred HHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-ch----hHHHHHHHHH
Q psy7924 231 TDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NP----NLCTIIVGTI 305 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~----~~~~~~~~~~ 305 (481)
.+..+..+.+++++.+.......... ... ......+.+.+..+.+.+. +. +......++.
T Consensus 206 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~ 270 (408)
T PRK09874 206 -----------LHMREVVTSLKNPKLVLSLFVTTLII---QVA-TGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVA 270 (408)
T ss_pred -----------hHHHHHHHhCcCCchHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 00001123344443332222211111 111 1122222333333322221 21 2334445667
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcc
Q psy7924 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGE 385 (481)
Q Consensus 306 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 385 (481)
..++.+..++++||++||+.+..+.....++.+..... ++.+...+...+.+.+.+... +.......+
T Consensus 271 ~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~ 338 (408)
T PRK09874 271 ALLSAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV-----------QTPLQLGILRFLLGAADGALL-PAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHhhhHhhH-HHHHHHHHH
Confidence 78888899999999999999888877666655544331 222333333344444444333 333356668
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhc
Q psy7924 386 IFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILV 445 (481)
Q Consensus 386 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 445 (481)
..|++.|++..++.+....+|..++|.+.|.+.+..|++..|.+.+++.++..+..+...
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~ 398 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSL 398 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999999999999888887777766665443
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-28 Score=225.63 Aligned_cols=373 Identities=13% Similarity=0.080 Sum_probs=228.8
Q ss_pred cccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHH----HHhHHhHhh
Q psy7924 11 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIG----SSMALGAVF 86 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~ 86 (481)
..|.+++ +|+++++.+++.+++.++..+++++.|+++||+|||+.+..+.++.+++.++.++. +++. .+
T Consensus 49 ~~p~~~~----~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l- 121 (438)
T TIGR00712 49 AMPYLVE----QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIA--IM- 121 (438)
T ss_pred hhHHHHH----cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccccchHH--HH-
Confidence 3455544 49999999999999999999999999999999999999999999999988887664 3455 66
Q ss_pred hhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
.+.|++. |++.+...+.... +++|+++.+..+.+. .+|..+++.+...
T Consensus 122 ---~~~~~l~--g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~--------------------~~g~~~~~~l~~~ 176 (438)
T TIGR00712 122 ---FVLLFLN--GWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAH--------------------NIGGGIPPLLVLL 176 (438)
T ss_pred ---HHHHHHH--HHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHH--------------------HhHhHHHHHHHHH
Confidence 7889998 8877765443222 678999999988888 7777666554310
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhh
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE 238 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
......+||..|++.+++.++..+.. +++||+|+....+.. ++ . +++. .. +. .++.+
T Consensus 177 --------~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~-~------~~~~-~~-~~----~~~~~ 234 (438)
T TIGR00712 177 --------GMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPPI-EE-Y------RNDY-PD-DY----NEKAE 234 (438)
T ss_pred --------HHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCCc-hh-c------cccc-cc-cc----ccccc
Confidence 01134589999999888877755444 467888754211000 00 0 0000 00 00 00000
Q ss_pred hhccCccch-HHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 239 KERSDKVPL-MQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
++.+.++.. +..+|++..+.... ...+... .......+.|.+.++ .|++. +.+....+..+.++++.++.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~~~~g~ 309 (438)
T TIGR00712 235 QELTAKEIFMQYVLPNKLLWYIAI----ANVFVYL-LRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGW 309 (438)
T ss_pred cccchHHHHHHHHccCchHHHHHH----HHHHHHH-HHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 000001111 23455543332222 1111111 123344455555554 67776 5667777888889999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
++||+++++....+........+...... ... ..+.+.........+.+. .+..........|.+|++.|+++
T Consensus 310 l~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~~ 382 (438)
T TIGR00712 310 MSDKVFKGNRGATGVFFMTLVTIAVIVYW-MNP-----AGNPLVDMICMIVIGFLI-YGPVMLIGLHALELAPKKAAGTA 382 (438)
T ss_pred HHHHhccCcccHHHHHHHHHHHHHHHHHH-hcC-----CCchHHHHHHHHHHHHHH-ccHHHHHHHHHHHhcChhheeee
Confidence 99999654322222222222111111110 110 111122222222222211 11111112456799999999999
Q ss_pred HHHHHHHHHHHH-HHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 396 VSIACLFNWVSV-LVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 396 ~g~~~~~~~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
.|+.+..+++++ .++|.+.|.+.|..|+...+.+..++.+++.+...+.+||.|
T Consensus 383 ~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (438)
T TIGR00712 383 AGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEK 437 (438)
T ss_pred hhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 999999988875 679999999999999988888888887777777777777765
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.4e-27 Score=220.03 Aligned_cols=336 Identities=13% Similarity=0.025 Sum_probs=221.2
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAV 85 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (481)
+...|.+|.+.+ |+|.++.+.++..+.+.+++.+++++.|+++||+|||+++..+..+..++.+.+.++++++ .+
T Consensus 30 ~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~l 104 (406)
T PRK15402 30 DMIQPGMLAVVE---DFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLAQSIE--QF 104 (406)
T ss_pred hhHhcchHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHccHH--HH
Confidence 445677788888 9999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred hhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
++.|++. |++.+...+.... +++|.+..+...... .+|..+++.++
T Consensus 105 ----~~~~~l~--G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~g~~i~- 157 (406)
T PRK15402 105 ----TLLRFLQ--GIGLCFIGAVGYAAIQESFEEADAIKITALMANVA--------------------LLAPLLGPLVG- 157 (406)
T ss_pred ----HHHHHHH--HhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHH--------------------HHHHHHHHHHH-
Confidence 9999999 9887765443332 445555555555444 45555555554
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
+......+||+.+++.++..++..+..+ ..||+++.. ++ ++ .
T Consensus 158 --------~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~-----------------~-------- 200 (406)
T PRK15402 158 --------AALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRV---GE-KL-----------------S-------- 200 (406)
T ss_pred --------HHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCccc---cc-cc-----------------c--------
Confidence 1111456899999998888776665444 467764210 00 00 0
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHH-hhhcCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI-FKDAGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
.++...+.++.+++|+.+....... ..... ......+.|.+ .+..+.+. +.+.......++..++.++.++
T Consensus 201 --~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~~~g~ 273 (406)
T PRK15402 201 --LKELGRDYKLVLKNRRFVAGALALG----LVSLP-LLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNLTLAR 273 (406)
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHH----HHHHH-HHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000113455677764332222111 11111 11222233444 45567765 3455555566678889999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
++||+++|+.+..+.++..++...+....... ....+.......+.+.+.+....... ... ...++++|++.
T Consensus 274 l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~g~g~~~~~~~~~-~~~-~~~~~~~~g~~ 345 (406)
T PRK15402 274 LTSRRPLRSLIRMGLWPMVAGLLLAALATVIS------SHAYLWLTAGLSLYAFGIGLANAGLY-RLT-LFSSDVSKGTV 345 (406)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHcc------cccHHHHHHHHHHHHHHHHHHhhhHH-HHH-hhhccccccHH
Confidence 99999999998888777777666655432111 11222333444455555444333332 333 23345889999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCCh
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLGGHG 425 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~ 425 (481)
.+..+....++..+++.+.+.+.+..++..
T Consensus 346 ~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~ 375 (406)
T PRK15402 346 SAAMGMLSMLIFTVGIELSKHAYLGGGNGL 375 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCchHH
Confidence 999999999999999999998877766543
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.4e-28 Score=221.43 Aligned_cols=335 Identities=14% Similarity=0.029 Sum_probs=234.7
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH-----H
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS-----S 79 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-----~ 79 (481)
.+...+.+|.+.. |++.++.+.+++.+++.++..+++++.|+++||+|||+++..+.++..++..+..+.+ +
T Consensus 15 ~~~~~~~~~~~~~---~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (365)
T TIGR00900 15 TAITQVALPLYVL---AGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLN 91 (365)
T ss_pred HHHHHHHHHHHHH---HhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3445667788888 8999999999999999999999999999999999999999999999999988888888 8
Q ss_pred hHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhh
Q psy7924 80 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILC 152 (481)
Q Consensus 80 ~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 152 (481)
++ .+ ++.|++. |++.+...+.... +++|++..+..+.+. .+|..+
T Consensus 92 ~~--~~----~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~ 143 (365)
T TIGR00900 92 IW--QV----YVLAGIL--AIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVR--------------------SLFYIV 143 (365)
T ss_pred HH--HH----HHHHHHH--HHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHH--------------------HHHHHH
Confidence 88 88 9999999 9888776555443 578899999998888 888888
Q ss_pred hhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhcc--CCChhHHhhcCcHHHHHHHHHHHhCCCccchHHH
Q psy7924 153 PISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLM--PESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEI 230 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~--~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (481)
++.++. ......+||+.+++.++..++..+..+.+ ||+++. ++.+ .+++
T Consensus 144 g~~l~~---------~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~---------------~~~~- 194 (365)
T TIGR00900 144 GPGIGG---------LMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAAS----EIQA---------------LSNA- 194 (365)
T ss_pred HHHHHH---------HHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCCc----cccc---------------cchh-
Confidence 877762 22256789999998887766655444433 333210 0000 0000
Q ss_pred HHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHH
Q psy7924 231 TDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMV 308 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~ 308 (481)
..++.++..++.+|+|..+....... ............+.|++.++ .+.+. +.+.......++.++
T Consensus 195 --------~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (365)
T TIGR00900 195 --------VLRDTREGIKFVLKNPLLRTLLLLAL----LFNLVFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGLGALL 262 (365)
T ss_pred --------HHHHHHhHHHHHHcCcHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHHHHHH
Confidence 00001123455666654333222222 11111112222455666554 67776 556677778888999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc
Q psy7924 309 TTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388 (481)
Q Consensus 309 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 388 (481)
+.++.+++.||.+||+.+..+..+.+++....... .++.+...+..++.+++.+... +....+..|..|
T Consensus 263 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~ 331 (365)
T TIGR00900 263 GALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT----------PPNFPLFLVLWFAIGVGYGPIN-VPQGTLLQRRVP 331 (365)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh----------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCC
Confidence 99999999999999998887766666665555442 1112333444445555444433 444578889999
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 389 SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 389 ~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
++.|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus 332 ~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 332 AELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999988654
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=225.64 Aligned_cols=362 Identities=17% Similarity=0.098 Sum_probs=236.2
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
....++.+|.+.+ |+|.++.+.+++.+.+.++..++.+++|+++||+|||+++..+..+..++.+++.++++.+ .
T Consensus 26 ~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~ 100 (471)
T PRK10504 26 TTIVNTALPSMAQ---SLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLN--E 100 (471)
T ss_pred HHHHHHHHHHHHH---HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhCCHH--H
Confidence 3445678899998 9999999999999999999999999999999999999999999999999999999998888 8
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|+++ |++.+...+.... +++|+...+...... .+|..+++.++
T Consensus 101 l----~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~g~~~~ 154 (471)
T PRK10504 101 L----LLARVLQ--GVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPG--------------------QVGPLLGPALG 154 (471)
T ss_pred H----HHHHHHH--HhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------------------HHHHHhhhHHH
Confidence 8 9999999 9988876655443 456777777777766 67776666665
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHH---------HhCCCcc--
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQW---------FRGSEYD-- 225 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~---------~~~~~~~-- 225 (481)
+...+..+||+.|.+......+..+... ..|+.+. ++.+.|........ ..+.+..
T Consensus 155 ---------g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (471)
T PRK10504 155 ---------GLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGL 222 (471)
T ss_pred ---------HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCc
Confidence 2222556899999998877666555554 3455431 11122221111000 0111000
Q ss_pred chHHHHH----------HHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-
Q psy7924 226 IDSEITD----------MQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL- 293 (481)
Q Consensus 226 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~- 293 (481)
....... ....++++..++....+++|++.++......+ .... .......+.|++.+. .|.+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~----~~~~-~~~~~~~~~~~~~~~~~g~~~~ 297 (471)
T PRK10504 223 SPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSF----AGRI-GSGMLPFMTPVFLQIGLGFSPF 297 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHcCCCHH
Confidence 0000000 00000111111111234677764433222122 1111 233445566766654 67766
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhh
Q psy7924 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL 373 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (481)
..+.......+...++.++.+++.||+|||+.+..+..+..+....+.... . ....+.......+.+.+.+.
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~g~~~~~ 369 (471)
T PRK10504 298 HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLVA---L-----LGWYYLLPFVLFLQGMVNST 369 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhcc---c-----cccHHHHHHHHHHHHHHHHH
Confidence 556667777777888889999999999999999888887776655554321 0 11111122223333344444
Q ss_pred ccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q psy7924 374 GFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGG 423 (481)
Q Consensus 374 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 423 (481)
...+.. .+..+..|++.++++.++.++...+|..+++.+.+.+.+..|+
T Consensus 370 ~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g~ 418 (471)
T PRK10504 370 RFSSMN-TLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFGQ 418 (471)
T ss_pred HHHHHH-HHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444443 6777899999999999999999999999999999998887765
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-27 Score=218.92 Aligned_cols=330 Identities=14% Similarity=0.115 Sum_probs=216.9
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
..+.+|.+.+ |+|.++++.++..+.+.++..+++++.|+++||+|||+.+..+.++..++..++..+++.+ .+
T Consensus 22 ~~~~lp~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~--~~-- 94 (392)
T PRK10473 22 YLVGLPRIAA---DLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCSLAETSS--LF-- 94 (392)
T ss_pred HhhhHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHH--HH--
Confidence 3467889988 9999999999999999999999999999999999999999999999999999999999988 88
Q ss_pred hhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSR 160 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 160 (481)
++.|++. |++.+...+.... +++|++..+..+... .+|..+++.++.
T Consensus 95 --~~~~~l~--g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~i~~~~~~~i~~-- 148 (392)
T PRK10473 95 --LAGRFLQ--GIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGIT--------------------CIIPVLAPVLGH-- 148 (392)
T ss_pred --HHHHHHH--HhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH--
Confidence 8999999 9887765543333 677888888877776 666666666652
Q ss_pred hhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 161 RLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 161 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
......+||+.+++.++..++..+... ++||+++. +.+ +
T Consensus 149 -------~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-~----------------------------- 188 (392)
T PRK10473 149 -------LIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP-A----------------------------- 188 (392)
T ss_pred -------HHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC-C-----------------------------
Confidence 111456899999998887776655544 57776421 000 0
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHH-HhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK-IFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIV 317 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~ 317 (481)
+++..+..++.+++++.+............ ......+.|. ..++.|++. +.+.......+..+++.++.+++.
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~~l~ 263 (392)
T PRK10473 189 ASSKPRENSESLLNRFFLSRLVITTLSVTV-----ILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSFSTPFAL 263 (392)
T ss_pred ccchHHHHHHHHhCHHHHHHHHHHHHHHHH-----HHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000011223455555433333222211111 1122223343 345567776 445667778888899999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHH
Q psy7924 318 DRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397 (481)
Q Consensus 318 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 397 (481)
||+|||+.+..+..+..++.+.+... ...........+...+.+.+... ....+..|.+.|+ |
T Consensus 264 ~r~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~g~~~~~~~---~~~~~~~~~~~~~---g 326 (392)
T PRK10473 264 GIFKPRTLMLTSQVLFLAAGITLALS-----------PSHAVSLFGITLICAGFSVGFGV---AMSQALGPFSLRA---G 326 (392)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHhHH---HHHHHhccCcccc---c
Confidence 99999999988888777766665542 11122222223333333333222 2334555655543 4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHH
Q psy7924 398 IACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSV 432 (481)
Q Consensus 398 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 432 (481)
.......++..+++.+.+.+.+..|+.....+.+.
T Consensus 327 ~~~~~~~~~~~~g~~~~~~l~~~~g~~~~~~~~~~ 361 (392)
T PRK10473 327 VASSTLGIAQVCGSSLWIWLAAVLGISAWNMLIGI 361 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 44445567777778888888888887654443333
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=210.52 Aligned_cols=356 Identities=13% Similarity=0.067 Sum_probs=235.9
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHH-----HHhHHh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIG-----SSMALG 83 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 83 (481)
+|+.+.+.+. |+|+|.+|.+++.+++.++++++.++.|++.||+|.|+++.++.++..+.++..+++ ++++
T Consensus 54 ~~l~~~~~~~--~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~-- 129 (462)
T PRK15034 54 SAVTVNLNKI--GFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFG-- 129 (462)
T ss_pred HHHHHHhhhh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHH--
Confidence 3444554331 799999999999999999999999999999999999999999999999999999987 7888
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISI 156 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 156 (481)
.+ ++.|++. |++ +..++.... +++||++.++..... ++|..+...+
T Consensus 130 ~l----li~r~l~--Gig-g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G--------------------~~G~~l~~~l 182 (462)
T PRK15034 130 IF----IVIALLC--GFA-GANFASSMGNISFFFPKAKQGSALGINGGLG--------------------NLGVSVMQLV 182 (462)
T ss_pred HH----HHHHHHH--HHH-HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHH--------------------hhHHHHHHHH
Confidence 88 9999999 987 444433333 567999999886554 5555544444
Q ss_pred hhhhhhhhH---hhc------cchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCccc
Q psy7924 157 SQSRRLAQV---IKE------RKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEYDI 226 (481)
Q Consensus 157 ~~~~~~~~~---~~~------~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~ 226 (481)
......... .+. .....+||...++..++.++..++.++ .++.|.
T Consensus 183 ~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------------------- 237 (462)
T PRK15034 183 APLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------------------- 237 (462)
T ss_pred HHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-------------------------
Confidence 422111101 011 113556999888888877766666554 333220
Q ss_pred hHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHH
Q psy7924 227 DSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTI 305 (481)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~ 305 (481)
++.+..+.++.+|+|+.|...++ ++..+..+..+.++.|++.++ .++. +......+..+.
T Consensus 238 -------------~~~~~~~~~~vlk~~~~Wllsll-----y~~tFG~fvg~s~~lp~~~~~-~~~~~~~l~~~~l~~l~ 298 (462)
T PRK15034 238 -------------SRASIADQLPVLQRLHLWLLSLL-----YLATFGSFIGFSAGFAMLAKT-QFPDVNILRLAFFGPFI 298 (462)
T ss_pred -------------cccCHHHHHHHhCCCchhHHHHH-----HHHHHHHHHHHHHHHHHHHHH-HcChHHHHHHHHHHHHH
Confidence 01112245567888754432222 223333445556666666655 3333 222234455677
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcc
Q psy7924 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGE 385 (481)
Q Consensus 306 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 385 (481)
..+.++++|+++||+|+|+++..+.+...++........ +.+. ..+.+......+......+.+..++ +-++++
T Consensus 299 ~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p~~~---~~~~~~~~~~~~~l~~~~G~gngsv-fk~ip~ 372 (462)
T PRK15034 299 GAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--PGTG---SGNFIAFYAVFMGLFLTAGLGSGST-FQMIAV 372 (462)
T ss_pred HHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--cccc---ccHHHHHHHHHHHHHHHhcccchHH-HHhhHH
Confidence 889999999999999999999988887777665433321 1100 1122223333333334444455444 356777
Q ss_pred cCcc---------------------cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHH
Q psy7924 386 IFPS---------------------QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAVFTYI 443 (481)
Q Consensus 386 ~~p~---------------------~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 443 (481)
.+|+ ++-|.+.|+....+.+|+++.|.+++...+..| +...++.+.+..+++.++.+.
T Consensus 373 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~w~ 452 (462)
T PRK15034 373 IFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPVGAMKVFLIFYIVCVLLTWL 452 (462)
T ss_pred HHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 7774 156788999999999999999999998888766 555677788888887777766
Q ss_pred hc
Q psy7924 444 LV 445 (481)
Q Consensus 444 ~~ 445 (481)
.+
T Consensus 453 ~y 454 (462)
T PRK15034 453 VY 454 (462)
T ss_pred Hh
Confidence 54
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.1e-27 Score=226.29 Aligned_cols=362 Identities=13% Similarity=0.072 Sum_probs=244.3
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
....++.+|.+.+ |+|.+.++.+++.+.+.++..++.++.|+++||+|||+++..+.++..+++++++++++++ .
T Consensus 18 ~~~~~~~~p~~~~---~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~ 92 (485)
T TIGR00711 18 STIVNVAIPTIAG---DLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLE--L 92 (485)
T ss_pred HHHHHHHHHHHHH---hcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHH--H
Confidence 3455678899999 9999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ +++|+++ |++.+...+.... +++|++..++...+. .+|..+++.++
T Consensus 93 l----~~~~~~~--G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~g~~~~ 146 (485)
T TIGR00711 93 M----IIFRVIQ--GFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTV--------------------LVAPALGPTLG 146 (485)
T ss_pred H----HHHHHHH--HhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--------------------HHHhhhhhccH
Confidence 9 9999999 9998876655444 678899999988888 77777777766
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHH--------HH-H-hCCCccc
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESL--------QW-F-RGSEYDI 226 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~--------~~-~-~~~~~~~ 226 (481)
+...+..+||+.|++.+.+.++..+... .+||+++. .+++.|.....+ .. . ++.+.+.
T Consensus 147 ---------~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~ 215 (485)
T TIGR00711 147 ---------GWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGW 215 (485)
T ss_pred ---------hHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 2333567899999998887776655554 46765431 112222111100 00 0 1111110
Q ss_pred --hHHHH-HH---------HHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC
Q psy7924 227 --DSEIT-DM---------QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL 293 (481)
Q Consensus 227 --~~~~~-~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~ 293 (481)
..+.. .. ....+.+++++....+.++++.++...+..+. .... +....++.|.+.+ ..|.+.
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~p~~~~~~~g~s~ 290 (485)
T TIGR00711 216 FDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSL----LGLG-LYGSFYLLPLYLQQVLGYTA 290 (485)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHH----HHHH-HHHHHHHHHHHHHHhcCCCH
Confidence 00000 00 00011111111122356777644433222222 2221 2333445555554 468877
Q ss_pred -chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHh
Q psy7924 294 -NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFS 372 (481)
Q Consensus 294 -~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (481)
+.+.......++..++.++.+++.||+|||+.+..+..+.+++...+.... .+ ....+.......+.+.+.+
T Consensus 291 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~l~g~g~~ 363 (485)
T TIGR00711 291 LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTF---TP----DTPFLAIALPQFIRGFGMG 363 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhccC---CC----CCCHHHHHHHHHHHHHHHH
Confidence 567777888889999999999999999999998888877777766554211 00 1122233333444555554
Q ss_pred hccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy7924 373 LGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL 421 (481)
Q Consensus 373 ~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 421 (481)
....+.. ....+..|+++|+++.|+.+..+++|+.+++.+.+.+.++.
T Consensus 364 ~~~~~~~-~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 364 CFFMPLT-TIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHHH-HHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 45567889999999999999999999999999999888753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=222.77 Aligned_cols=353 Identities=14% Similarity=0.021 Sum_probs=224.3
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHH--HHhHHhHhhhhhHHHHhhccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIG--SSMALGAVFGSPVVGNLVDTV 98 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~r~~~~~ 98 (481)
|++++..+.|++.+.+.+++.+++++.|+++||+|||+++..+.+++.++.+++.++ .++. .+ ++.|+++
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--~l----~~~r~~~-- 141 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIA--LV----VFCRVIQ-- 141 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCch--HH----HHHHHHH--
Confidence 789999999999999999999999999999999999999999999999998887655 3455 77 9999999
Q ss_pred cccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccch
Q psy7924 99 GRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKF 171 (481)
Q Consensus 99 G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~ 171 (481)
|++.+...+.... +++|+++.++...+. .+|..+++.+.. ....
T Consensus 142 G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~i~~~l~~---------~l~~ 192 (465)
T TIGR00894 142 GLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGF--------------------QLGTFIFLPISG---------WLCE 192 (465)
T ss_pred HHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH---------HHHh
Confidence 9999988876655 578999999998888 888888877762 2223
Q ss_pred h-hHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHH
Q psy7924 172 E-ASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQ 249 (481)
Q Consensus 172 ~-~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (481)
. .+||+.|++.+++.++..+..+ +.+|+|+...... .+|. +..++ ..++.+++.+.+.++++
T Consensus 193 ~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~-~~i~~--------------~~~~~~~~~~~~~~~~~ 256 (465)
T TIGR00894 193 SWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPCIS-KFEK-KYINS--------------SLQGQKGSTRQSLPIKA 256 (465)
T ss_pred ccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCCCC-HHHH-HHHHh--------------hcccccCCCCCCCCHHH
Confidence 4 4899999999988877766665 4667774211111 1110 00000 00000001112345777
Q ss_pred HhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHH-
Q psy7924 250 AFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILL- 326 (481)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~- 326 (481)
.++++..+ ......+.... .......+.|.++ +..|++. +.+....+..++..++.++.|+++||+++|+..
T Consensus 257 ~~~~~~~~----~~~~~~~~~~~-~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~d~~~~~~~~~ 331 (465)
T TIGR00894 257 IPKSLPVW----AIWFAIFGHFW-LYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWLCSIFAGYLADFLKSSKTLS 331 (465)
T ss_pred HhcCHHHH----HHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77775332 22222222222 2344455656554 5578876 556777788889999999999999998644211
Q ss_pred -------HHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHH
Q psy7924 327 -------LVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399 (481)
Q Consensus 327 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 399 (481)
..+......+...+... . . .......+....+.+.+.+.. .+..+....|..|. .+|.+.++.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~-~--~-----~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~-~~g~~~g~~ 401 (465)
T TIGR00894 332 LTAARKIFNGIGGLGPGIFAYALP-Y--L-----SAAFYLTIIILTLANAVSSGP-LAGVLINSLDLAPR-FLGFIKGIT 401 (465)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-H--c-----CCchHHHHHHHHHHHHHhhhh-hhhhhhchhhcChh-HHHHHHHHH
Confidence 11111111111111111 0 0 111122222222222222222 22233445566665 899999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHhh---cCChhHHHHHHHHHHHHHHH
Q psy7924 400 CLFNWVSVLVVTKFFGDVTLLL---GGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 400 ~~~~~~g~~~~~~~~~~~~~~~---g~~~~~~~~~~~~~~~~~~~ 441 (481)
+..+.+++.++|.+.+.+.+.. +|...|.+.+++.++..++.
T Consensus 402 ~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~ 446 (465)
T TIGR00894 402 GLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFY 446 (465)
T ss_pred HHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHe
Confidence 9999999999999999877653 25556666665555554443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-26 Score=212.89 Aligned_cols=338 Identities=17% Similarity=0.188 Sum_probs=215.9
Q ss_pred ccCchhhHHHHHH-----HHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHH------hHhhhhhHH
Q psy7924 23 LVTESDLSFIGSS-----MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMAL------GAVFGSPVV 91 (481)
Q Consensus 23 ~~~~~~~~~~~s~-----~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~------~~l~g~~~~ 91 (481)
+.++++.+.+.+. ..++..+++++.|+++||+|||+++..+.++..++.+++++++++.. ..+ ++
T Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 101 (394)
T TIGR00883 26 PSGDPLVALLATFATFAAGFLARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILL----LL 101 (394)
T ss_pred CCCChHHHHHHHHHHHHHHHHHhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHH----HH
Confidence 3556666665543 33444578999999999999999999999999999999999887641 135 88
Q ss_pred HHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhh
Q psy7924 92 GNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQ 164 (481)
Q Consensus 92 ~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 164 (481)
.|+++ |++.+...+.... +++|++..+....+. .+|..+++.+..... .
T Consensus 102 ~r~l~--G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~G~~i~~~~~~~~~--~ 157 (394)
T TIGR00883 102 ARLIQ--GFSLGGEWGGAALYLAEYAPPGKRGFYGSFQQVGA--------------------PVGLLLAALTVLLLS--Y 157 (394)
T ss_pred HHHHH--HhhccccccccHHHhhhcCCcccchHHHHHHHHHH--------------------HHHHHHHHHHHHHHH--H
Confidence 99999 9988876655544 778899999888888 888887776652211 0
Q ss_pred Hhh-ccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccC
Q psy7924 165 VIK-ERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSD 243 (481)
Q Consensus 165 ~~~-~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (481)
... ......+||+.+++.++..++........||+|++..++ +++++.
T Consensus 158 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~ 206 (394)
T TIGR00883 158 LLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNLEETPVFEKAQ-------------------------------EKHKKK 206 (394)
T ss_pred hcCHHHhhccchHHHHHHHHHHHHHHHHHHHhcCCChhHHHHH-------------------------------hccccc
Confidence 001 011346899999988877766655555678776431100 011112
Q ss_pred ccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy7924 244 KVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLG 321 (481)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g 321 (481)
+.+.++.+++++ +..+............ ......+.|.+. ++.|.+. +.+.......+...++.++.++++||+|
T Consensus 207 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g 283 (394)
T TIGR00883 207 RGPIRETLTKHR--KPFLLGLGLVIATTTT-FYLITTYLPTYLTQTLGLSANSALLVLMLSLILFFITIPLSGALSDRIG 283 (394)
T ss_pred cCCHHHHHHhch--HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 234556666542 2233333233222222 333444555555 5567776 4556777778889999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHH-
Q psy7924 322 RRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIAC- 400 (481)
Q Consensus 322 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~- 400 (481)
||+.+.....+..+......... .. ....+.......+.+.+.+....+ ...+..|.+|++.|+++.++.+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~ 355 (394)
T TIGR00883 284 RRPVLIIFTVLAALLAVPLLMAL-LD------SGSFTLFFFLVLGLALIGGMYTGP-MGSFLPELFPTEVRYTGASLAYN 355 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hc------CCchHHHHHHHHHHHHHHHHHhhh-HHHHHHHhCCccceeeEeeehhH
Confidence 99987755544443332111111 00 112233333344444444444444 4588899999999999999854
Q ss_pred HHHHHHHHHHHhHHHHHHHhhc-CChhHHHH
Q psy7924 401 LFNWVSVLVVTKFFGDVTLLLG-GHGAFWIF 430 (481)
Q Consensus 401 ~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~ 430 (481)
....++..++|.+.|.+.+..| |+..++..
T Consensus 356 ~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~ 386 (394)
T TIGR00883 356 LAGAIFGGFAPYIAAALVAMTGDWYAIGYYL 386 (394)
T ss_pred hHHHHHhhHHHHHHHHHHHHcCcchhHHHHH
Confidence 4456788899999999999888 55444333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-26 Score=211.21 Aligned_cols=324 Identities=24% Similarity=0.231 Sum_probs=250.3
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
.....+.+|.+.+ +++.++.+.+++.+.+.++..+++++.|+++||+|||+.+..+..+..++.+...+.++++ .
T Consensus 15 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~ 89 (352)
T cd06174 15 RGLLSPALPLLAE---DLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLW--L 89 (352)
T ss_pred hhhhHhhHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHhccHH--H
Confidence 4455677788888 8899999999999999999999999999999999999999999999999999999999988 8
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..+...... .+|..+++.+.
T Consensus 90 ~----~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~ 143 (352)
T cd06174 90 L----LVGRFLL--GLGGGALYPAAAALIAEWFPPKERGRALGLFSAGF--------------------GLGALLGPLLG 143 (352)
T ss_pred H----HHHHHHH--HcccccccHhHHHHHHHhCCccchhhhhhHHHHHH--------------------HHHHHHHHHHH
Confidence 8 9999999 9988877666555 568999999988888 88888887777
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
. ...+..+||+.+++.++..++..+...+++
T Consensus 144 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 174 (352)
T cd06174 144 G---------LLAESLGWRWLFLILAILGLLLALLLLFLL---------------------------------------- 174 (352)
T ss_pred H---------HHHHHhhHHHHHHHHHHHHHHHHHHHHHHH----------------------------------------
Confidence 2 222456799999998888777665554332
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhc-CCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDA-GSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
+..+......... .........+.+.+.++. +.+. +.+.......+...++.++.++
T Consensus 175 --------------------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 233 (352)
T cd06174 175 --------------------RLLLLLALAFFLL-SFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233 (352)
T ss_pred --------------------HHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111112222 222344445555555553 6665 5567888888999999999999
Q ss_pred HHHHhCChH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh
Q psy7924 316 IVDRLGRRI-LLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI 394 (481)
Q Consensus 316 l~d~~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 394 (481)
+.||++||+ .+..+..+..++.+..... ++.+.......+.+.+.+.. .+....+..|..|+++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~ 301 (352)
T cd06174 234 LSDRLGRRRLLLLIGLLLAALGLLLLALA-----------PSLALLLVALLLLGFGLGFA-FPALLTLASELAPPEARGT 301 (352)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHhcc-chhHHHHHHhhcCHHHHHH
Confidence 999999999 8888888888887776552 22334444455555554444 3455688899999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy7924 395 AVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 395 ~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
..|+.+...+++..++|.+.+.+.+..+++..+.+.+++.++..++.
T Consensus 302 ~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 302 ASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999998999999988887777766554
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=213.86 Aligned_cols=349 Identities=15% Similarity=0.081 Sum_probs=232.5
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
.....|.+|.+.+ |+|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++..++.+.+.++++++ .
T Consensus 21 ~~~~~~~~p~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~ 95 (385)
T TIGR00710 21 IDMYLPAFPEIAA---DLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIE--T 95 (385)
T ss_pred HHHhcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH--H
Confidence 4456788899988 9999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..+..+... .+|..+++.++
T Consensus 96 ~----~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~g~~~~ 149 (385)
T TIGR00710 96 L----LVLRFVQ--AFGASAGSVISQALVRDIYPGEELSRIYSILMPVL--------------------ALAPAVAPLLG 149 (385)
T ss_pred H----HHHHHHH--HcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 8 9999999 9888776554443 577899998888888 77777777666
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
+......+||+.+++.++..++..+..+ ..||+++.. .+ +
T Consensus 150 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~-------------------------- 190 (385)
T TIGR00710 150 ---------GYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE---AR-I-------------------------- 190 (385)
T ss_pred ---------HHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc---cc-C--------------------------
Confidence 2222556899999988887776655554 467764210 00 0
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
++++...+.++.+++++.+...+..... . ........+.|.+. ++.|.++ +.+.......+..+++.++.+
T Consensus 191 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~g 263 (385)
T TIGR00710 191 --QISTYFETFLLLLKSKMFWGYALIYGAS----F-GGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNG 263 (385)
T ss_pred --CHHHHHHHHHHHHcCchhHHHHHHHHHH----H-HHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000011344566665433322221111 1 11223333445444 4577776 556677778888999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh
Q psy7924 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI 394 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 394 (481)
++.||+++|+.+..+..+..++.+.+....... ............+.+.+.+... +.......|..| +.|++
T Consensus 264 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~-~~~g~ 335 (385)
T TIGR00710 264 RFIKKWGAKSLLRMGLILFAVSAVLLEITAILG------LGSWAMIIGPMMFVGIGNSMIS-SIAMAYALEDFP-HVAGT 335 (385)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc------cchHHHHHHHHHHHHHHHHHHH-HHHHHHHhccCc-ccchH
Confidence 999999999988887777666665554421110 0111122222333334333333 333466678777 57899
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q psy7924 395 AVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVF 440 (481)
Q Consensus 395 ~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 440 (481)
+.++.+.....++.+.+++.+...+.. ...+........+..++
T Consensus 336 ~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 379 (385)
T TIGR00710 336 ASALFGTLRLVLGAIVGYLVSLIHGNT--AWPMSLSCLVLAVVSVL 379 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccC--hHHHHHHHHHHHHHHHH
Confidence 999999888877777777766443332 33444444444443333
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=216.19 Aligned_cols=328 Identities=16% Similarity=0.063 Sum_probs=214.3
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAV 85 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (481)
+...|.+|.+.+ ++|.++++.+++.+++.++..++++++|+++||+|||+++..+..+..++.+++.++++++ .+
T Consensus 23 ~~~~p~~~~i~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~l 97 (401)
T PRK11043 23 DMYLPAFKAIQA---DLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWVESAA--QL 97 (401)
T ss_pred HHHHhhHHHHHH---HHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHhcCHH--HH
Confidence 344577777888 9999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred hhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
++.|++. |++.+...+.... +++++...+...... .+|..+++.++
T Consensus 98 ----~~~~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~g~~i~- 150 (401)
T PRK11043 98 ----LVLRFVQ--AVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLV--------------------ALSPALAPLLG- 150 (401)
T ss_pred ----HHHHHHH--HhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--------------------HHHHHHHHHHH-
Confidence 9999999 8876544332211 333444444444333 45555555544
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhh
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
+...+..+||+.+++.++..++..+..++++|+++. ++
T Consensus 151 --------~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~------------------------------ 188 (401)
T PRK11043 151 --------AWLLNHFGWQAIFATLFAITLLLILPTLRLKPSKKA----RK------------------------------ 188 (401)
T ss_pred --------HHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCCCc----cc------------------------------
Confidence 122255689999999888877776666656655310 00
Q ss_pred hhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHH
Q psy7924 239 KERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIV 317 (481)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~ 317 (481)
+++++.++++.+++++.+...+..... . ..+.....+.|.+.++.|++. +.+.......++..++.++.+++.
T Consensus 189 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~~~~l~ 262 (401)
T PRK11043 189 -QSQDALTFKQLLKSKTYLGNVLIFAAC----S-AAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYGCRAAL 262 (401)
T ss_pred -cchHHHHHHHHHcChhHHHHHHHHHHH----H-HHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000112345666665443322221111 1 112233345666667778876 455556666677888999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHH
Q psy7924 318 DRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397 (481)
Q Consensus 318 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 397 (481)
||+++|+..........++.+.+....... ....+.......+.+.+.+... +.......|..| +.|+++.|
T Consensus 263 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~g~~~g 334 (401)
T PRK11043 263 QKWGGEQLLPWLLVLFAVSVIAIWLASLLS------HPSLVPLLIPFCVMAAANGAIY-PIVVAQALRPFP-QATGKAAA 334 (401)
T ss_pred HHcCHHHHHHHHHHHHHHHHHHHHHHHHhc------cCcHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhCc-ccChHHHH
Confidence 999998877665555555444333221111 1122222333334444444333 333355556666 57999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhh
Q psy7924 398 IACLFNWVSVLVVTKFFGDVTLLL 421 (481)
Q Consensus 398 ~~~~~~~~g~~~~~~~~~~~~~~~ 421 (481)
+.+..+..++..++.+.+.+.+..
T Consensus 335 ~~~~~~~~~~~~~~~~~g~l~~~~ 358 (401)
T PRK11043 335 LQNTLQLGLCFLASLLVSALISTP 358 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCC
Confidence 999999999999999988887643
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=213.15 Aligned_cols=353 Identities=16% Similarity=0.183 Sum_probs=248.8
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~ 100 (481)
+++.+++|.+++.+.++.|+.+++++.|+++||+|-|+++..+.++.++++++..++.+.....+ ++.|+++ |+
T Consensus 67 ~~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~----~~~R~lq--Gl 140 (466)
T KOG2532|consen 67 EYDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASIGFYLL----LVLRFLQ--GL 140 (466)
T ss_pred eecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhh----HHHHHHh--HH
Confidence 78999999999999999999999999999999999999999999999999999999887764356 9999999 99
Q ss_pred cceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchh-
Q psy7924 101 KNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFE- 172 (481)
Q Consensus 101 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~- 172 (481)
+.|..++.... +++|++..++...+. .+|.++...++ +...+.
T Consensus 141 ~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~--------------------q~g~v~~mp~s---------g~lc~s~ 191 (466)
T KOG2532|consen 141 GQGVLFPAIGSILAKWAPPNERSTFIAILTAGS--------------------QLGTIITMPVS---------GLLCESS 191 (466)
T ss_pred HHhHHHhhhhceeeeECCHHHHHHHHHHHHHHH--------------------HHHHHHHHHhH---------HHHhccC
Confidence 99988887777 789999999998888 78887777665 222244
Q ss_pred hHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhc---cCccchH
Q psy7924 173 ASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKER---SDKVPLM 248 (481)
Q Consensus 173 ~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 248 (481)
.||+..|++.++.+++..++++ +..|+|+.. . .-.++|.+.+++.+.+++ +.+.|++
T Consensus 192 ~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~h---~----------------~is~~El~~I~~~k~~~~~~~~~~vP~~ 252 (466)
T KOG2532|consen 192 LGWPSIFYVFGIVGLIWFILWFLFYSDSPSKH---P----------------NISEKELKYIEKGKSEAHVKKKPPVPYK 252 (466)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcCCcccC---C----------------CCCHHHHHHHHhcccccccCCCCCCCHH
Confidence 8999999999999999888877 467777421 0 011122222222222221 1467899
Q ss_pred HHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCCh---
Q psy7924 249 QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRR--- 323 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr--- 323 (481)
++++++. ++......++.++ ....+..|.|.+++ .++++. +.++...+..+...+..+++|.++||..+|
T Consensus 253 ~i~ts~~----vwai~~~~f~~~~-~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~~k~~~g~lsD~l~~~~ls 327 (466)
T KOG2532|consen 253 AILTSPP----VWAIWISAFGGNW-GFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAIVKFVAGQLSDRLTFRILS 327 (466)
T ss_pred HHHcCHH----HHHHHHHHHHHHH-HHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCc
Confidence 9999864 3333333333333 34555556665554 588988 778899999999999999999999998652
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhh-hhhcccCcccchhhHH
Q psy7924 324 ------ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPW-MLVGEIFPSQIKGIAV 396 (481)
Q Consensus 324 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~~p~~~r~~~~ 396 (481)
..-.++....+++++.+++. . ....+..++.+.+.... .+...... .-..+. .++.-+..+
T Consensus 328 ~t~~rkifn~i~~~~~ai~l~~l~~~---~------~~~~~~a~~~l~~~~~~--~g~~~~Gf~~~~~~~-apq~a~~l~ 395 (466)
T KOG2532|consen 328 ETTVRKIFNTIAFGGPAVFLLVLAFT---S------DEHRLLAVILLTIAIGL--SGFNISGFYKNHQDI-APQHAGFVM 395 (466)
T ss_pred hHhHHHHHHhHHHHHHHHHHHeeeec---C------CCcchHHHHHHHHHHHH--cccchhhhHhhhhhc-cchHHHHHH
Confidence 22234444444444444442 1 11222222222222122 22222221 222232 446779999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHH---hhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 397 SIACLFNWVSVLVVTKFFGDVTL---LLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 397 g~~~~~~~~g~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
|+.+....+.++++|.+.+.+.. ...|+..|.+.+++.++..++..++
T Consensus 396 g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 396 GIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred HHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 99999999999999999998883 3468889998888888877655444
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.9e-26 Score=210.44 Aligned_cols=353 Identities=12% Similarity=0.030 Sum_probs=219.0
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH----HHHhHHh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI----GSSMALG 83 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~ 83 (481)
..+.+|.+.+ |+|.++++.+++.+.+.++..+++++.|+++||+|||+++..+..+.+++++++.. .++++
T Consensus 32 ~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~-- 106 (402)
T TIGR00897 32 EQGWLSPFLK---ALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYP-- 106 (402)
T ss_pred HHHhHHHHHH---HhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHH--
Confidence 3445666777 89999999999999999999999999999999999999999999999888776532 24566
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchh-hhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAI-LCPIS 155 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~~ 155 (481)
.+ ++.|++. |++.+...+.... +++|+++.+..+.+. .+|. .+++.
T Consensus 107 ~l----~~~~~i~--G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~--------------------~~g~~~~g~~ 160 (402)
T TIGR00897 107 LI----LLFYGIR--GLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVY--------------------SIGIGVFGSY 160 (402)
T ss_pred HH----HHHHHHH--HcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHH
Confidence 77 8899999 8887654333221 778999999988888 7775 35555
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (481)
++. ......+|+..++......++..+.. ++.+|.++- ++.+.+ +
T Consensus 161 ~~~---------~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------------~------ 206 (402)
T TIGR00897 161 YSS---------YAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP--QHMQTR-----------------E------ 206 (402)
T ss_pred HHH---------hcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCc--ccccCC-----------------c------
Confidence 441 11123343333332222222222222 233432210 000000 0
Q ss_pred HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHH
Q psy7924 235 NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIA 313 (481)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 313 (481)
+.++.+...++.+|+|..+... ...++.. ........+.|.+.++.|++. +.+.......++..+++++.
T Consensus 207 ----~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ig~~~~ 277 (402)
T TIGR00897 207 ----KFSELGKAATILFTNPNVLLGG----MVRIINT-IGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNIVFNVIF 277 (402)
T ss_pred ----chhhHHHHHHHHHcChhHHHHH----HHHHHHH-HHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 0000011234566765433222 2222222 223444556677777788876 44556667778899999999
Q ss_pred HHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccch
Q psy7924 314 TMIVDRLGRRILLL-VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIK 392 (481)
Q Consensus 314 g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 392 (481)
|+++||++||+... .+.+...++.+.+....... .++.+.......+.+.+.+. ..+.. ....|..| ++|
T Consensus 278 g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~------~~~~~~~~~~~~~~G~~~~~-~~~~~-~~~~~~~~-~~~ 348 (402)
T TIGR00897 278 GIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHF------GHSFAVALIIAIALGIFLAG-YVPLA-AVFPTLAP-KHK 348 (402)
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHcc------CCcHHHHHHHHHHHHHHHHH-HHHHH-HHHHhhCc-chh
Confidence 99999999888664 23333333322222211000 11222233333344443332 23333 45567655 689
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy7924 393 GIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYI 443 (481)
Q Consensus 393 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (481)
+++.|+.+...+++..++|.+.+.+.+..|+...+++.+++.++..++..+
T Consensus 349 g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~ 399 (402)
T TIGR00897 349 GAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAF 399 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988888888777666665543
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-26 Score=212.39 Aligned_cols=325 Identities=17% Similarity=0.153 Sum_probs=212.4
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
.+...|.+|.+.+ ++|+++++.+++.+++.++..++.++.|+++||+|||+++..+..+..++...+.++++++ .
T Consensus 7 ~~~~~p~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~--~ 81 (377)
T PRK11102 7 IDMYLPALPVIAA---DFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALAQTID--Q 81 (377)
T ss_pred HHHHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHHccHH--H
Confidence 4556789999999 9999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..+....+. .+|..+++.++
T Consensus 82 ~----~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~ 135 (377)
T PRK11102 82 L----IYMRFLH--GLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVM--------------------TIAPLLAPIIG 135 (377)
T ss_pred H----HHHHHHH--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 8 9999999 9887765443333 567899998888887 77777777666
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
+......+||+.+++.+++.++..+.. +++||+++. +++. +.+
T Consensus 136 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------~~~----------- 179 (377)
T PRK11102 136 ---------GWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK---ERRQ-------------PFH----------- 179 (377)
T ss_pred ---------HHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---cccC-------------CCC-----------
Confidence 222245689999998888777665544 357776421 0000 000
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhH-HHhhhcCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTV-KIFKDAGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
.++...+.++.+++++.+...+ ..... .........+.| ++.+..|.+. +.+.......+..+++.++.+
T Consensus 180 ---~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 251 (377)
T PRK11102 180 ---LRTTIRNFASLFRHKRVLGYML----ASGFS-FAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTIINS 251 (377)
T ss_pred ---hHHHHHHHHHHHcChHHHHHHH----HHHHH-HHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0000113445666653322111 11111 111222222333 4445567776 556777788888999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh
Q psy7924 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI 394 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 394 (481)
++.||+|||+.+..+..+..+..+.+...... +...+........+..+.+...... .....|..| +.+++
T Consensus 252 ~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~g~ 322 (377)
T PRK11102 252 RFVRRVGALNMLRFGLWIQFIMGIWLVVSALL-------DLGFWALVVGVAAFVGCVSMISSNA-MAVILDEFP-HMAGT 322 (377)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHH-------hhhHHHHHHHHHHHHHHHHHhhHHH-HHHHhcccc-ccchH
Confidence 99999999998887776654433332221100 1111222222222322222222222 345667776 78899
Q ss_pred HHHHHHHHHH-HHHHHHHhH
Q psy7924 395 AVSIACLFNW-VSVLVVTKF 413 (481)
Q Consensus 395 ~~g~~~~~~~-~g~~~~~~~ 413 (481)
+.++.+.... ++..+++.+
T Consensus 323 ~~~~~~~~~~~~g~~~g~~~ 342 (377)
T PRK11102 323 ASSLAGTLRFGIGAIVGALL 342 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 9998877654 444444443
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-26 Score=213.57 Aligned_cols=369 Identities=12% Similarity=0.056 Sum_probs=214.1
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH-H-HHhHHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI-G-SSMALG 83 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~-~-~~~~~~ 83 (481)
+...|.+|...++ ++|+++.+.|++.+++.++..+++++.|+++||+|||++++++..+.+++...... . ......
T Consensus 27 ~~~~~~~~~~l~~--~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (420)
T PRK09528 27 SSWFSFFPIWLHD--INGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQY 104 (420)
T ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566655551 59999999999999999999999999999999999999998876665544332211 1 111100
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
..+...+++++.. |.+.....+.... .++++...+...... .+|..+++.++.
T Consensus 105 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~--------------------~~g~~i~~~~~g 162 (420)
T PRK09528 105 NILLGAIVGGIYL--GFGFLAGAGAIEAYIERVSRRSGFEYGRARMWG--------------------SLGWALCAFIAG 162 (420)
T ss_pred HHHHHHHHHHHHh--hhhhccchhhhhhHHHHHHhhccccchhhHHhh--------------------hHHHHHHHHHHH
Confidence 0100013344444 4333222221111 234444444444444 666666666651
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhcc-CCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLM-PESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
.. ...+|+..|++.++..++..+..++. ||.|+....+ ++ +..
T Consensus 163 ---------~l-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-----------------------~~~ 206 (420)
T PRK09528 163 ---------IL-FNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA---NA-----------------------LGA 206 (420)
T ss_pred ---------HH-HhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhc---cc-----------------------hhc
Confidence 11 12379999998888877766666554 3332100000 00 000
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l 316 (481)
++++.+..+.++.+|+|..+...+..+......... ......+......+.+.+. ..+.......+...++.++.+++
T Consensus 207 ~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l 285 (420)
T PRK09528 207 NASAVSLKDALALLKLPKFWFLVLYVIGVACFYDVF-DQQFPNFFASFFATPEQGTRVFGYLNSFQVFLEALIMFFAPFI 285 (420)
T ss_pred ccccccHHHHHHHccCCCeEeehHHHHHHHHHHHHH-HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111123445677765544333222221111110 0111112222222223333 33556666777888999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHH
Q psy7924 317 VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAV 396 (481)
Q Consensus 317 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 396 (481)
.||+|||+.+..+..+..+......+. ++.+.......+.+....... +....+..|.+|++.|++..
T Consensus 286 ~dr~g~~~~~~~~~~l~~~~~~l~~~~-----------~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~a~~~ 353 (420)
T PRK09528 286 INRIGAKNALLLAGTIMAVRIIGSGFA-----------TGPLEVSILKLLHAFEVPFLL-VGVFKYITLNFDVRLSATIY 353 (420)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccceeeee
Confidence 999999999888888777766665442 223333333333333332222 22336778889999999887
Q ss_pred HH-HHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 397 SI-ACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 397 g~-~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
+. .+....+|.+++|.+.|.+.|..||+..|.+.+++.++..++.....++
T Consensus 354 ~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 354 LVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 5677889999999999999999999999998888877777666655544
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-26 Score=212.51 Aligned_cols=354 Identities=13% Similarity=0.056 Sum_probs=221.7
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccc-hhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
.|..+.+.+ ++|++.+|+|++.+++.++..++++++|.++||+|| |+++.++.++..++..+..+.++++ .+
T Consensus 23 ~~l~~~l~~---~~g~s~~~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~-- 95 (418)
T TIGR00889 23 VTLGSYMSK---TLHFSGAEIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALLLFFAAQVTTPA--GM-- 95 (418)
T ss_pred HHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcCHH--HH--
Confidence 334455556 799999999999999999999999999999999965 7788888888888888888888888 87
Q ss_pred hhHHHHhhccccccceeeeeeccc---------------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS---------------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILC 152 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~---------------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 152 (481)
++.|++. |+..+...+.... ...|.+..+ .+|..+
T Consensus 96 --~~~~~l~--~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~r~~G--------------------------~lG~~i 145 (418)
T TIGR00889 96 --FPVLLAN--SLAYMPTIALTNSISYANLPQAGLDVVTDFPPIRVMG--------------------------TIGFIA 145 (418)
T ss_pred --HHHHHHH--HHHHccHHHHHHHHHHHHHhhcCCCchhcCCCeeeeh--------------------------hHHHHH
Confidence 7888887 7654333221110 001111111 344444
Q ss_pred hhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHH
Q psy7924 153 PISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD 232 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (481)
++.++. .......|+. |++.++..++..+..+++||+|+- +++.+.
T Consensus 146 g~~l~g---------~l~~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~~---~~~~~~--------------------- 191 (418)
T TIGR00889 146 AMWAVS---------LLDIELSNIQ-LYITAGSSALLGVFALTLPDIPVA---KSTAKM--------------------- 191 (418)
T ss_pred HHHHHH---------HhcccchhHH-HHHHHHHHHHHHHHHhcCCCCCCC---cccccc---------------------
Confidence 444441 1112334553 445555555555555578887621 000000
Q ss_pred HHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC---------chhHHHHHHH
Q psy7924 233 MQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL---------NPNLCTIIVG 303 (481)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~~~~~~~~ 303 (481)
+ .++..+.+.++.+|+|.++......+...... .....+.+.+.++.|.++ ..+.......
T Consensus 192 ---~--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~ 261 (418)
T TIGR00889 192 ---S--IKVMLGLDAFILFKNKRMAIFFFFSMLLGAPL-----QITNIFGNGFLHEFGRNPEFADSFVVKNASIWMSLSQ 261 (418)
T ss_pred ---C--HHHHhhhhHHHHhcCCCeeeHHHHHHHHHhHH-----HHHHHhHHHHHHHhcccccccchhhhhhHHHHHHHHH
Confidence 0 00001112345677765444333322221111 122233344444544332 2356667777
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhh
Q psy7924 304 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLV 383 (481)
Q Consensus 304 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (481)
+..+++.++.++++||+|||+.+..+.++..++...+... ... ....+...+..++.+.+.+... +....++
T Consensus 262 i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~----~~~---~~~~~~l~l~~~l~g~~~~~~~-~~~~~~i 333 (418)
T TIGR00889 262 FSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG----DPE---YFGYALLFLSMIVYGCAFDFFN-ISGSVFV 333 (418)
T ss_pred HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----Ccc---hhhHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 8888999999999999999999999988887776555431 000 0011222333444444444332 3334778
Q ss_pred cccCcccchhhHHHHHH-HHHHHHHHHHHhHHHHHHHhh------cCChhHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7924 384 GEIFPSQIKGIAVSIAC-LFNWVSVLVVTKFFGDVTLLL------GGHGAFWIFSVIAALGAVFTYILVPETKGK 451 (481)
Q Consensus 384 ~e~~p~~~r~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (481)
.|.+|++.|+++.|+.+ ....+|..++|.+.|.+.|.. ||+..|.+.+++.++.+++.+++.||++++
T Consensus 334 ~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~~~ 408 (418)
T TIGR00889 334 EKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSHNA 408 (418)
T ss_pred HHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 89999999999999997 567899999999999999984 477788888888888888888888876544
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.3e-26 Score=208.74 Aligned_cols=326 Identities=11% Similarity=0.071 Sum_probs=217.3
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAV 85 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (481)
....|.+|.+.+ |+|.++++.+++.+++.++..+++++.|+++||+|||+++.++.++..++.+.+ .+++.+ .+
T Consensus 17 ~~~~~~lp~l~~---~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~--~l 90 (355)
T TIGR00896 17 TSVGPLLPQIRS---ALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-SAPGTA--LL 90 (355)
T ss_pred ccCcccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-HhccHH--HH
Confidence 445788999999 999999999999999999999999999999999999999999998888888777 677777 88
Q ss_pred hhhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
++.|++. |++.+...+.... +++|+++.+....+. .+|..+++.+...
T Consensus 91 ----~~~~~~~--g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~i~~~~~~~ 144 (355)
T TIGR00896 91 ----FAGTALI--GVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMAL--------------------MGGAALAAAATVP 144 (355)
T ss_pred ----HHHHHHH--HHHHHHHhccchHHHHHhCcchhhHHHHHHHHHH--------------------HHHHHHHHHHHHH
Confidence 8999999 8888765444333 568888988888887 7777777666521
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
.. .. ...+||+.|.+.++..++... .++||.++. + + ++
T Consensus 145 l~-----~~--~~~~w~~~f~~~~~~~~~~~~--~~~~~~~~~-----~-~---------------------------~~ 182 (355)
T TIGR00896 145 LA-----QH--SGGHWQQALAWWALPALLALL--AWIPQVRRR-----V-A---------------------------AN 182 (355)
T ss_pred HH-----Hh--hhhhHHHHHHHHHHHHHHHHH--HHhhhhccc-----c-C---------------------------CC
Confidence 10 00 112499988776655443322 234443210 0 0 00
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD 318 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d 318 (481)
++..+.+.++.+|+|..+...+ ... .....+.....+.|.+.++.|.+. +.+.......++.++++++.+++.|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~~~~g~l~d 257 (355)
T TIGR00896 183 QTTTRLTPVRIWRSPLAWQVTV----FFG-LQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASALLIPALAR 257 (355)
T ss_pred CCCCCCCCchhhcCHhHHHHHH----HHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 0001123445666654332111 111 111123344456676777778876 5567788888999999999999999
Q ss_pred Hh-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhc-ccCcccchhhHH
Q psy7924 319 RL-GRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVG-EIFPSQIKGIAV 396 (481)
Q Consensus 319 ~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~p~~~r~~~~ 396 (481)
|+ +||+.+..+..+..++.+.+... ... ... ....+++++.+... +....... +..+++.+++..
T Consensus 258 r~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~~-~~~~l~g~~~g~~~-~~~~~~~~~~~~~~~~~g~~~ 324 (355)
T TIGR00896 258 RVKDQRGIVAVLAVLQLVGLCGLLFA----------PMH-GLW-AWALVLGLGQGGAF-PLALTLIGLRSRQAAQAAALS 324 (355)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHHh----------hhh-HHH-HHHHHHHHhhhhHh-HHHHHHHHHhccCHHHHHHHH
Confidence 99 56666666666666666555432 111 111 12333444433333 22223443 344567778999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcC
Q psy7924 397 SIACLFNWVSVLVVTKFFGDVTLLLGG 423 (481)
Q Consensus 397 g~~~~~~~~g~~~~~~~~~~~~~~~g~ 423 (481)
++.+..++++..++|.+.|.+.|+.|.
T Consensus 325 ~~~~~~~~~~~~~gp~~~G~l~~~~g~ 351 (355)
T TIGR00896 325 AMAQSIGYLLAALGPLFVGVLHDISGN 351 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999998763
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=195.07 Aligned_cols=352 Identities=17% Similarity=0.177 Sum_probs=255.6
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhH-HhHhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMA-LGAVFG 87 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~g 87 (481)
+|+.+.+.+ |+|+|++|.+++.++..+..++..++.|.+.||||.|++..++.++..+-++..+++.+.+ .+++
T Consensus 34 s~l~~~i~~---~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~l-- 108 (417)
T COG2223 34 SPLGVFIKS---DFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQL-- 108 (417)
T ss_pred HHHHhhhcc---ccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHH--
Confidence 456677777 9999999999999999999999999999999999999999999999999999999885433 2277
Q ss_pred hhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
++.+++. |++.+......+. ++++|.+.++.. .- ++|..+...+....
T Consensus 109 --l~~gll~--G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~G--------------------N~G~av~q~~~P~v- 162 (417)
T COG2223 109 --LVIGLLL--GLAGASFAVGMPNASFFFPKEKQGLALGIAG-AG--------------------NLGVAVAQLVAPLV- 162 (417)
T ss_pred --HHHHHHH--hcccceehcccccccccCChhhhhHHHHHhc-cc--------------------cccHHHHHHHHHHH-
Confidence 9999999 9998777666655 788899999888 44 67777766666211
Q ss_pred hhhHhhccchhhH---HHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 162 LAQVIKERKFEAS---VYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 162 ~~~~~~~~~~~~~---w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
....+ ||....+..+..++..+..+ ...|.|+..
T Consensus 163 --------~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r---------------------------------- 200 (417)
T COG2223 163 --------AVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHR---------------------------------- 200 (417)
T ss_pred --------HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhh----------------------------------
Confidence 13444 99888888887777555555 466665320
Q ss_pred hhhccCc-cchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhH-HHhhhcCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDK-VPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTV-KIFKDAGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 238 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
...++.. .+++..+++++.|...+ .+...+..+..+..+.| ++.++++.+. +++.......+.+.+.++++|
T Consensus 201 ~~~~~~~~~~~~~v~~~~~~W~lsl-----lY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~g~l~Rp~GG 275 (417)
T COG2223 201 ASVKPQLPAQLKAVFSNKDTWLLSL-----LYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLIGALARPLGG 275 (417)
T ss_pred ccccccchhHHHHHhcCcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHhccc
Confidence 0011111 34566776654443222 22233333444555555 4455688887 667888888899999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh
Q psy7924 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI 394 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 394 (481)
+++||+|.++++...+..++++............. ..+........+....+.+.+...+ +.+++..+|. +-|.
T Consensus 276 ~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~----~~~~~~~~~~~l~l~~~~G~GnGsv-fk~Ip~if~~-~~G~ 349 (417)
T COG2223 276 WLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH----GGSFVVFVAVFLALFVFAGLGNGSV-FKMIPVIFPK-ETGA 349 (417)
T ss_pred hhhhhccchhHHHHHHHHHHHHHHHHHcccccccc----CcchHHHHHHHHHHHHHhccCcchh-eeechHHHHh-hhhH
Confidence 99999999999999999888888877663211110 1223333444445555566666655 4777788875 5688
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHh
Q psy7924 395 AVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 395 ~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
..|+....+.+|+...|...+...+..| +...|+++..+.+++.+..+..
T Consensus 350 v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~ 400 (417)
T COG2223 350 VTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWAL 400 (417)
T ss_pred HHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 6677888887777777766544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=207.80 Aligned_cols=345 Identities=13% Similarity=0.091 Sum_probs=202.9
Q ss_pred cccccccccc-ccCCCCcccCchhhHHHHHHHHH-HHhhhhhhhhhhhccccchhhh-hhhhhhHHHHhHHHHHHHHhHH
Q psy7924 6 GWTSPAGDRL-IAGEYPFLVTESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTM-LLLAVPTVTESDLSFIGSSMAL 82 (481)
Q Consensus 6 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~g~l~d~~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~ 82 (481)
+...|.+|.. .+ |+|.++++.|++.+...+ ++.++.++.++ +||+||||.+ ..+.++..++..+.+++++++
T Consensus 32 ~~~~p~~~~~l~~---~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~- 106 (393)
T PRK15011 32 ALQTPTLSIFLTD---EVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYF- 106 (393)
T ss_pred HHHHHHHHHHHHh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHHhhHHH-
Confidence 3345666653 45 899999999999876655 66666666666 9999999875 455666667777788888888
Q ss_pred hHhhhhhHHH-Hhhccccccceeeeeeccc-----cccccch----hhhhhHHHHHHHhhhccccccccccccccchhhh
Q psy7924 83 GAVFGSPVVG-NLVDTVGRKNTMLLLAVPS-----FDIRPLL----GETSQVTVWVLISTTNRRISDKCFVGSDHLAILC 152 (481)
Q Consensus 83 ~~l~g~~~~~-r~~~~~G~~~~~~~~~~~~-----~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 152 (481)
.+ ++. +++. |.+. ...+.... .+++++. .+..+.+. .+|..+
T Consensus 107 -~l----~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~lg~~~ 158 (393)
T PRK15011 107 -VL----LFVGVFLS--SFGS-TANPQMFALAREHADKTGREAVMFSSFLRAQV--------------------SLAWVI 158 (393)
T ss_pred -HH----HHHHHHHH--HHHH-hhHHHHHHHHHHHhhhccchHHHHHHHHHHHH--------------------HHHHHH
Confidence 76 444 4445 4433 22222222 2333332 34555555 667777
Q ss_pred hhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHH
Q psy7924 153 PISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT 231 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (481)
++.++ +...+..+||..|++.++..++..+..+ ++||+|+- .+ ++
T Consensus 159 g~~i~---------~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~-------------------- 204 (393)
T PRK15011 159 GPPLA---------YALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE----LP-LA-------------------- 204 (393)
T ss_pred hhHHH---------HHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC----Cc-cc--------------------
Confidence 66666 2222567999999999887776655544 57876521 00 00
Q ss_pred HHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHH-HhhhcCCCC-chhHHHHHHHHHHHHH
Q psy7924 232 DMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK-IFKDAGSSL-NPNLCTIIVGTIMMVT 309 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~ 309 (481)
+++ .... .++++.....+. ...... ..+.....+.|. +.++.+.+. +.+.......+..+++
T Consensus 205 ------~~~---~~~~---~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~~ 268 (393)
T PRK15011 205 ------TGT---LEAP---RRNRRDTLLLFV---ICTLMW-GTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPT 268 (393)
T ss_pred ------ccc---cccc---ccccccHHHHHH---HHHHHH-HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 000 0000 011111111111 111111 112223334444 445567776 4455555556677889
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcc
Q psy7924 310 TWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPS 389 (481)
Q Consensus 310 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 389 (481)
.++.|+++||+|||+.+..+.....+....... .++.+.......+.....+...... ..+..|.+|+
T Consensus 269 ~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~l~~~~~g~~~~~~-~~~~~~~~p~ 336 (393)
T PRK15011 269 MLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM-----------AHSPAILLGLQLLNAIYIGILGGIG-MLYFQDLMPG 336 (393)
T ss_pred HHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-----------HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCC
Confidence 999999999999999777665544443322211 1122222222222222322222222 3566788885
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 390 QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 390 ~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
.|+++.++.+...++|..++|.+.|.+.+..||+..+.+..++.++..+.. +..||
T Consensus 337 -~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~ 392 (393)
T PRK15011 337 -QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCL-LRIKD 392 (393)
T ss_pred -CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhhcC
Confidence 589999999999999999999999999998898888876665555544443 44454
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-27 Score=215.65 Aligned_cols=327 Identities=20% Similarity=0.204 Sum_probs=227.2
Q ss_pred cccccccc-ccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 6 GWTSPAGD-RLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 6 g~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
+...+.+| .+.+ ++|.++++.+++.+++.++..+++++.|+++||+|||+++..+.++.+++.++..++++.+ .
T Consensus 13 ~~~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--~ 87 (352)
T PF07690_consen 13 SIISPALPLYLAE---ELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAFASNFW--L 87 (352)
T ss_dssp HHHHHHHH-HHHC---CSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHH--H
T ss_pred HHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHH--H
Confidence 34566777 7778 9999999999999999999999999999999999999999999999999977777778888 8
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..+...... .+|..+++.++
T Consensus 88 ~----~~~~~l~--g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~g~~l~ 141 (352)
T PF07690_consen 88 L----LIARFLL--GIGSGFFSPASNALIADWFPPEERGRAFGILSAGF--------------------SLGSILGPLLG 141 (352)
T ss_dssp H----HHHHHHH--HHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHH--------------------HHHHHHHHHHH
T ss_pred H----hhhcccc--ccccccccccccccccccchhhhhhhccccccchh--------------------hhhhhcccchh
Confidence 8 9999999 9998776666555 568999999999998 88888888887
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
+......+||+.+++.++..++..++. .+++++|+....+.+.++ +
T Consensus 142 ---------~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~-----------------~------- 188 (352)
T PF07690_consen 142 ---------GFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKES-----------------E------- 188 (352)
T ss_dssp ---------HHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTT-----------------T-------
T ss_pred ---------hhhhhccccccccccccchhhhhhhhHhhhhhhccccccccccccc-----------------c-------
Confidence 333366789999999999988877643 345544421111000000 0
Q ss_pred hhhhccCcc-chHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHH-hhhcCCC-C-chhHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKV-PLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI-FKDAGSS-L-NPNLCTIIVGTIMMVTTWI 312 (481)
Q Consensus 237 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~-~-~~~~~~~~~~~~~~~~~~~ 312 (481)
++++++.. .+++.++++..+ ..+....... ........+.|.+ .+..|.+ . +.+.......+...++.++
T Consensus 189 -~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (352)
T PF07690_consen 189 -SKKPKPLKPGFKSLFKNPVLW-ILLIAFFLFF----FVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIGSLL 262 (352)
T ss_dssp ---HHHCCCH-CTHHHHHHCCH-HHHHHHHHHH----HHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cccccccccccccccccchhh-hhhhhhhHHH----HHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111 245555554333 1222222221 1223355556654 6667777 3 5556677888888899999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccch
Q psy7924 313 ATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIK 392 (481)
Q Consensus 313 ~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 392 (481)
.+++.||+++|+..........+..+.+..... ..+.........+.+.+.+.. .+....+..|.+|++.|
T Consensus 263 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~ 333 (352)
T PF07690_consen 263 AGRLSDRFGRRRRLLIAILLLILGALGLLLLPF--------SSSPVWLIIALFLIGFGFGIV-FPILFSLIQELVPPEYR 333 (352)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHH--------HCHHHHHHHHHHHHHHHHHHH-CHHHHHHHHCCCHTCHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhCCHHHH
Confidence 999999999988777777666666665544321 112233334444555544444 34455888999999999
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy7924 393 GIAVSIACLFNWVSVLVVT 411 (481)
Q Consensus 393 ~~~~g~~~~~~~~g~~~~~ 411 (481)
+++.|+.+...+++..++|
T Consensus 334 g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 334 GTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999887
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-25 Score=206.49 Aligned_cols=341 Identities=13% Similarity=-0.002 Sum_probs=230.7
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhh----hhhhhhHHHHhHHHHHHHHh
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM----LLLAVPTVTESDLSFIGSSM 80 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~----~~~~~~~~~~~~~~~~~~~~ 80 (481)
++...|.+|.+.+ |+|.|.+++|++.+++.+...++++++|+++||+|||+.. ..+..+..+ ..+..++++
T Consensus 20 ~~~~~p~l~~~l~---~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 94 (382)
T TIGR00902 20 YGIFLPFFPAWLK---GIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAA--AFSAGAHNA 94 (382)
T ss_pred HHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhH
Confidence 4667788999999 9999999999999999999999999999999999985433 222222222 244567888
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
+ .+ ++.|.+. |.+.+...+.... .++|++..+....+. ++|..+++.
T Consensus 95 ~--~l----~~~~~l~--~~~~~~~~p~~~al~~~~~~~~~~~~g~~~~~~--------------------slG~~~g~~ 146 (382)
T TIGR00902 95 W--LL----FIAIGLF--ALFFSAGMPIGDALANTWQKQFGLDYGKVRLIG--------------------SAAFIIGSA 146 (382)
T ss_pred H--HH----HHHHHHH--HHHHccchhHHHHHHHHHHHHcCCCccHHHHHH--------------------HHHHHHHHH
Confidence 8 88 8889988 7666554444333 566788888877777 788888777
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN 235 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 235 (481)
++ +...+..+||..|++......+.. ..+.++|+++- +++ ++
T Consensus 147 l~---------g~l~~~~g~~~~f~~~~~~~~~~~-~~~~~~~~~~~---~~~-~~------------------------ 188 (382)
T TIGR00902 147 LF---------GGLIGMFDEQNILAILTAGLAFML-IGFLIKPTIPP---KDA-IP------------------------ 188 (382)
T ss_pred HH---------HHHHHHcChhHHHHHHHHHHHHHH-HHHHcCCCCCC---Ccc-cc------------------------
Confidence 66 333366799999888765533332 23333443200 000 00
Q ss_pred hhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 236 SLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
++++++..+.++.+|+|+++...+..+. .... ......+.|.+.++.|.+. ..+.......+..+++..+.+
T Consensus 189 --~~~~~~~~~~~~~l~~~~~~~~l~~~~l----~~~~-~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~~~~~~~ 261 (382)
T TIGR00902 189 --EDESQGDSAFIALLKNPMNLRFLAAVCL----IQGA-HAAYYGFSAIYWQAAGISASATGLLWGIGVLAEIIIFAFSN 261 (382)
T ss_pred --ccccccchhHHHHHcChHHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHhH
Confidence 0001112245678888654433322222 1222 2233334455556688877 456666677788899999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh
Q psy7924 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI 394 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 394 (481)
++.||+|+|+.+..+.+...+....... .++.+.......+.+..++...... ..++.+. |+++|++
T Consensus 262 ~l~~r~g~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~q~l~g~~~~~~~~~~-~~~i~~~-~~~~~~~ 328 (382)
T TIGR00902 262 KLFQNCSARDLLLISAIACVGRWAIIGA-----------IEAFPLIFLLQILHCGTFAVCHLAA-MRYIAAQ-PGSEIAK 328 (382)
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHHHHHh-----------HhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHhC-CHhhHHH
Confidence 9999999999999999888888777655 2344555555666666666655544 3777777 9999999
Q ss_pred HHHHHHH-HHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 395 AVSIACL-FNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 395 ~~g~~~~-~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
+.++.+. ...+|..++|.+.|.+.|..|. ..|...+++.++.
T Consensus 329 ~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~ 371 (382)
T TIGR00902 329 LQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAA 371 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHH
Confidence 9999864 5678999999999999999885 5666666666544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-25 Score=205.17 Aligned_cols=348 Identities=14% Similarity=0.036 Sum_probs=218.5
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAV 85 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (481)
....|.+|.+.+ +++.+.++.++..+++.+++.++++++|+++||+|||++++.+.+++.++++++.++++++ .+
T Consensus 33 ~~~~p~l~~i~~---~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~--~l 107 (413)
T PRK15403 33 DLIQPGIINVVR---DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMT--QF 107 (413)
T ss_pred HhhccCHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHH--HH
Confidence 456788888888 9999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred hhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
+++|+++ |++.+...+.... +++|++..+...... .+|..+++.++.
T Consensus 108 ----~~~r~l~--Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~g~~lg~ 161 (413)
T PRK15403 108 ----LIARFIQ--GTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIV--------------------LVAPIIGPLSGA 161 (413)
T ss_pred ----HHHHHHH--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 9999999 9887643322222 455677777777777 777777776662
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
......+||+.|++.++..++..+..+ .+||+++. +++.. +
T Consensus 162 ---------~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~--------------~------------ 203 (413)
T PRK15403 162 ---------ALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPF--------------S------------ 203 (413)
T ss_pred ---------HHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCC--------------C------------
Confidence 122456899999999888777665544 57887521 00000 0
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
.+...+++++.+|+|..+...+.. .... ........+.|.+.++ .|.+. +.+........+..+++.+.+.
T Consensus 204 --~~~~~~~~~~ll~~~~~~~~~l~~----~~~~-~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~l~~~ 276 (413)
T PRK15403 204 --AKSVLRDFRNVFRNRLFLTGAATL----SLSY-IPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANAIVAR 276 (413)
T ss_pred --hHHHHHHHHHHHcCHHHHHHHHHH----HHHH-HHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000012345677776444322221 1111 1123333455655554 57776 4455655666677777777777
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
+.++..+++.......+..++..++....... .+..+.......+++.+.+...+... ... ..-....+|++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~------~~~~~~~~~~~~l~~~G~~~~~p~~~-~~a-l~~~~~~~G~a 348 (413)
T PRK15403 277 FVKDPTEPRFIWRAVPIQLVGLALLIVGNLLW------PHVWLWSVLGTSLYAFGIGLIFPTLF-RFT-LFSNNLPKGTV 348 (413)
T ss_pred HhccCCchhHHHHHHHHHHHHHHHHHHHHHHc------cccHHHHHHHHHHHHHHHHHHhHHHH-HHH-hccCCCCCcHH
Confidence 76554444443322233333332222211000 11112223344444444444333332 221 11122347999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 438 (481)
.++.+.....+...++...+++.+. +...++....+++.+..
T Consensus 349 ~a~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~ 390 (413)
T PRK15403 349 SASLNMVILMVMAVSVEIGRWLWFN-GGRLPFHLLAVVAGVIV 390 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHH
Confidence 9999999988888888888877665 55566666555554433
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-25 Score=212.11 Aligned_cols=362 Identities=14% Similarity=0.065 Sum_probs=232.5
Q ss_pred ccccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccc-----cchhh-hhhhhhhHHHHhHHHH
Q psy7924 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNT-MLLLAVPTVTESDLSF 75 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~~-~~~~~~~~~~~~~~~~ 75 (481)
|+..+..++.+|...+ +.|.+.++++.+ +.....+ ++.+++|+++||+ |||+. ++.+.+..+++...++
T Consensus 25 gl~~~~~~~~l~~~l~---~~g~~~~~ig~~-~~~~~~~-~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a 99 (491)
T PRK11010 25 GLPLALTSGTLQAWMT---VENIDLKTIGFF-SLVGQAY-VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG 99 (491)
T ss_pred HHHHHHHHHHHHHHHH---hCCCCHHHHHHH-HHHHHHH-HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 3445566777888888 889999999987 4444444 5889999999999 99986 6677777777777776
Q ss_pred HH---HHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccccccc
Q psy7924 76 IG---SSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGS 145 (481)
Q Consensus 76 ~~---~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (481)
+. ++++ .+ .+.+++. |++.+...+.... +++|++..++...+.
T Consensus 100 ~~~~~~~l~--~l----~~~~~l~--~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~------------------- 152 (491)
T PRK11010 100 FLEPGTQLR--WL----AALAVVI--AFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGY------------------- 152 (491)
T ss_pred HcCCcchHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHH-------------------
Confidence 65 3455 66 7788888 7766654443322 688999999998888
Q ss_pred ccchhhhhhhhhhhhhhhhHhhccch-hhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCc
Q psy7924 146 DHLAILCPISISQSRRLAQVIKERKF-EASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEY 224 (481)
Q Consensus 146 ~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~ 224 (481)
.+|.++++.+... ... ..+||..|++.++..++..+..++.||+++.. .+ ++
T Consensus 153 -~lG~llg~~l~~~---------l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~~~---~~-~~------------- 205 (491)
T PRK11010 153 -RLAMLVSGGLALW---------LADRYLGWQGMYWLMAALLIPCIIATLLAPEPTDTI---PV-PK------------- 205 (491)
T ss_pred -HHHHHHHHHHHHH---------HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cc-cc-------------
Confidence 8888887766521 113 35899999999988777766666678875310 00 00
Q ss_pred cchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHH-HHH
Q psy7924 225 DIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCT-IIV 302 (481)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~ 302 (481)
+ .+++...++++.+++++.+......+ ...........+..|++.++.|++. +.+... ...
T Consensus 206 ---~----------~~~~~~~~l~~~~~~~~~~~~ll~~~----l~~~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~~g 268 (491)
T PRK11010 206 ---T----------LEQAVVAPLRDFFGRNNAWLILLLIV----LYKLGDAFAMSLTTTFLIRGVGFDAGEVGLVNKTLG 268 (491)
T ss_pred ---c----------hhhhHHHHHHHHHcCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 0 00001124556666553332222221 1111112223345566566678876 445554 344
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhh
Q psy7924 303 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWML 382 (481)
Q Consensus 303 ~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
.++.+++.++.|+++||+|+|+.+..+.++..+..+.+...... .++.+.......+.....+.+.... +++
T Consensus 269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~-------~~~~~~l~~~~~l~~~~~g~~~~~~-~a~ 340 (491)
T PRK11010 269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSIT-------DKNLYSMGAAVFFENLCGGMGTAAF-VAL 340 (491)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 57889999999999999999887776665555544333221110 1111222222222222223333333 467
Q ss_pred hcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCC
Q psy7924 383 VGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 383 ~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
..+..|++.+++..|+.+....+|..+++.+.|.+.|..||+..|.+.+++++++.+.... .+++
T Consensus 341 ~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~-~~~~ 405 (491)
T PRK11010 341 LMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLV-CRQT 405 (491)
T ss_pred HHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH-HHhc
Confidence 7788999999999999999999999999999999999999988777777766665555543 3443
|
|
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.9e-26 Score=209.40 Aligned_cols=271 Identities=15% Similarity=0.083 Sum_probs=195.7
Q ss_pred ccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhh
Q psy7924 10 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSP 89 (481)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 89 (481)
+.+..+.+ |.+....|.+.+.+++++++++++++++.+.||++-.+.+....+++.+..++....+|++ .+
T Consensus 67 a~l~g~~e---dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~--~~---- 137 (495)
T KOG2533|consen 67 ASLSGLKE---DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAAVHSFP--GL---- 137 (495)
T ss_pred HHHcCCcc---ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhhH--HH----
Confidence 33444556 9999999999999999999999999999999999999999999999998888888899999 99
Q ss_pred HHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Q psy7924 90 VVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRL 162 (481)
Q Consensus 90 ~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 162 (481)
++.|++. |+.++..+|.... +++|+...+++.... .+|.+++..++....-
T Consensus 138 ialr~ll--Gl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~--------------------~~g~i~ggliA~g~~~ 195 (495)
T KOG2533|consen 138 IALRFLL--GLFESGGWPGVVAILGNWYGKSERGLRMGIWYASA--------------------SLGNIFGGLIAYGVFK 195 (495)
T ss_pred HHHHHHH--HHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhc--------------------chhhHHHHHHHHHhhh
Confidence 9999999 9999999888777 889999999999888 8888888888742110
Q ss_pred hhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChh--HHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 163 AQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQ--FHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 163 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~--~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
........+|||.|++.++++++..++.+ ++|+.|. |...+.+.+-+. ++.++.+ .....
T Consensus 196 ---~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~~---~~~~~~~-----------~~~~~ 258 (495)
T KOG2533|consen 196 ---LNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELVV---ERLRESP-----------SGGIE 258 (495)
T ss_pred ---hcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHHH---HHHHhcc-----------CCCcc
Confidence 12223567999999999999999887777 5899986 222111111111 1111000 00011
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTWIATMIV 317 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~ 317 (481)
++.++..+++.+++|..|...+ ..++.....+...++.|.+..+ .|++. ++..+.++..++++++.+++|+++
T Consensus 259 ~~~~~~~~~~a~~dp~vw~~~l-----~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~~~g~v~~i~ag~ls 333 (495)
T KOG2533|consen 259 NKFKWKGFKEALKDPGVWPFSL-----CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYDVGGIVGLILAGYLS 333 (495)
T ss_pred cccCHHHHHHHHhchhHHHHHH-----HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHHhhhHHHHHHHHHHH
Confidence 1134456778888875433222 2222222345667778887777 55776 677889999999999999999999
Q ss_pred HH----hCChHHHHHHHHHH
Q psy7924 318 DR----LGRRILLLVSAVIM 333 (481)
Q Consensus 318 d~----~grr~~~~~~~~~~ 333 (481)
|| ..+|........+.
T Consensus 334 dr~~~~~~~~~~~~~~~~~~ 353 (495)
T KOG2533|consen 334 DRLKTIFARRLLFIVFLCLY 353 (495)
T ss_pred HHHhhhHHHHHHHHHHHHHH
Confidence 99 44555444444333
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=207.90 Aligned_cols=347 Identities=14% Similarity=0.048 Sum_probs=222.8
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHH---HHHHHhHH
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLS---FIGSSMAL 82 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~ 82 (481)
....+.+|.+++ ++|+++++.+++.+.+.+++.+++++.|+++||+|||+++..+..++.++++++ .++++++
T Consensus 43 ~~~~~~~p~i~~---~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~- 118 (438)
T PRK10133 43 NLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYT- 118 (438)
T ss_pred HHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHH-
Confidence 345667888988 999999999999999999999999999999999999999999999999999886 4577888
Q ss_pred hHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 83 GAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 83 ~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
.+ +++|+++ |++.+...+.... .++|....+..+... .+|..+++.
T Consensus 119 -~l----l~~r~l~--G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~--------------------~~G~~~g~~ 171 (438)
T PRK10133 119 -LF----LVGLFII--AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN--------------------SFGAIIAVV 171 (438)
T ss_pred -HH----HHHHHHH--HHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHH--------------------HHHHHHHHH
Confidence 88 9999999 9998877665544 333444566777777 777777776
Q ss_pred hhhhhhhhh----------------Hhhccc-hhhHHHHHHHHhhHH-HHHHHHHHh-ccCCChhHHhhcCcHHHHHHHH
Q psy7924 156 ISQSRRLAQ----------------VIKERK-FEASVYGLSIICALL-PIFFVGLML-LMPESPQFHLKKNRVKQAKESL 216 (481)
Q Consensus 156 ~~~~~~~~~----------------~~~~~~-~~~~w~~~~~~~~~~-~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~ 216 (481)
++....... ...+.. ...+||++|+....+ .++..+... .+||.|. +++.
T Consensus 172 ~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~~~~------- 240 (438)
T PRK10133 172 FGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----DNHS------- 240 (438)
T ss_pred HHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----cccc-------
Confidence 653211000 000000 114688888654433 333322222 3454321 0000
Q ss_pred HHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-c
Q psy7924 217 QWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-N 294 (481)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~ 294 (481)
.+++.+...+.++++++|.++...+.. +... ........+..+++.+ ..|.++ +
T Consensus 241 --------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~-~~~~---~~~~~~~~~~~~~l~~~~~g~s~~~ 296 (438)
T PRK10133 241 --------------------DAKQGSFSASLSRLARIRHWRWAVLAQ-FCYV---GAQTACWSYLIRYAVEEIPGMTAGF 296 (438)
T ss_pred --------------------cccccchhhhHHHHHhCchHHHHHHHH-HHHH---HHHHHHHHHHHHHHhhhcCCCCHHH
Confidence 000001112345677776544322222 1111 1112222333445444 468887 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhc
Q psy7924 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
.+.......++.++++++.+++.||+|+|+.+..+..+.++.++..... . . ........+.+++.+..
T Consensus 297 ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~----------~-~-~~~~~~~~l~glg~~~i 364 (438)
T PRK10133 297 AANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA----------G-G-HVGLIALTLCSAFMSIQ 364 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------C-C-hHHHHHHHHHHHHHHHH
Confidence 6778888889999999999999999999999888776666555443321 1 1 12233444555565555
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHH
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVI 433 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~ 433 (481)
+++. +....|..|++ .+++.++.. ...+|+.++|++.|.+.|..| .+..|.+....
T Consensus 365 ~P~~-~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g~~~~~~~v~~~~ 421 (438)
T PRK10133 365 YPTI-FSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALC 421 (438)
T ss_pred HHHH-HHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 5444 47777877754 577778776 455788999999999989887 56666544433
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-25 Score=203.06 Aligned_cols=320 Identities=11% Similarity=-0.014 Sum_probs=213.6
Q ss_pred cccccc-cccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 9 SPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 9 ~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
.|.+|. +.+ ++|.+..+.|++.+.+.+...+..++.|+++||+|||+++..+.++..++.+.+.++++.+ .+
T Consensus 30 ~~~~~~~~~~---~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~--~l-- 102 (400)
T PRK11646 30 FPLISIRFVD---QLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIAHEPW--LL-- 102 (400)
T ss_pred HHHHHHHHHH---HhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHhccHH--HH--
Confidence 445544 345 8899999999999999999999999999999999999999999999999999999999988 88
Q ss_pred hhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSR 160 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 160 (481)
++.|++. |++.+...+.... +++|+++.+...... .+|..+++.++.
T Consensus 103 --~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------------------~~g~~ig~~l~g-- 156 (400)
T PRK11646 103 --WLSCILS--GLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQD--------------------SAGAVIGALLGS-- 156 (400)
T ss_pred --HHHHHHH--HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH--
Confidence 8999999 9887655443322 678999999998888 888888887772
Q ss_pred hhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 161 RLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 161 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
... ..+||+.|++.++..++..+.. ++.||.+. .+.
T Consensus 157 -------~l~-~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~-----~~~------------------------------ 193 (400)
T PRK11646 157 -------WLL-QYDFRLVCATGAVLFVLAAAFNAWLLPAYKL-----STV------------------------------ 193 (400)
T ss_pred -------HHH-HhhHHHHHHHHHHHHHHHHHHHHHhCCcccc-----ccc------------------------------
Confidence 222 4589999998887766654433 34555310 000
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD 318 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d 318 (481)
+++.+.++++.+++++.+....... ... . .......+.|.+.++.+.++ +.+.......+....+....+++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 268 (400)
T PRK11646 194 RTPVREGMTRVLRDKRFVTYVLTLT-GYY---M-LAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPIARWSE 268 (400)
T ss_pred chhhHHHHHHHHcCchHHHHHHHHH-HHH---H-HHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0001113455666654332211111 111 1 11122345566656544443 4455555555555555555556555
Q ss_pred -HhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHH
Q psy7924 319 -RLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVS 397 (481)
Q Consensus 319 -~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g 397 (481)
|++.++.+..+..+.+++...+... ++.+.......+++.+.+....+ ..++..|..|++.|+++.|
T Consensus 269 ~r~~~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~l~~~g~~~~~p~-~~~~~~~~~p~~~~g~~~g 336 (400)
T PRK11646 269 KRFRLEHRLMAGLLIMSLSMFPIGMV-----------SNLQQLFTLICLFYIGSIIAEPA-RETLSASLADARARGSYMG 336 (400)
T ss_pred HhcchhHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHHHcc-HHHHHHhcCCcccchhhhh
Confidence 4565666666666666665544431 12222333333344444333333 3477889999999999999
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHhh
Q psy7924 398 IACLFNWVSVLVVTKFFGDVTLLL 421 (481)
Q Consensus 398 ~~~~~~~~g~~~~~~~~~~~~~~~ 421 (481)
+.+....+|..++|.+.|.+.|..
T Consensus 337 ~~~~~~~~g~~ig~~l~G~l~~~~ 360 (400)
T PRK11646 337 FSRLGLALGGAIGYIGGGWLFDLG 360 (400)
T ss_pred HHHHHHHHHHHhcccchHHHHHHH
Confidence 999999999999999999999875
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.5e-25 Score=203.45 Aligned_cols=343 Identities=15% Similarity=0.075 Sum_probs=225.8
Q ss_pred ccccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHH---H
Q psy7924 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIG---S 78 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~---~ 78 (481)
|+..+...|.+|.+++ ++|+++.|.|++.+.+.+++.+++++.|++.||+|||+++..+.++++++.++...+ +
T Consensus 16 G~~~~~~~~l~~~~~~---~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~ 92 (410)
T TIGR00885 16 GFANDITNPMVPQFQQ---AFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAEIM 92 (410)
T ss_pred HHHHHhHHHHHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5566778899999999 999999999999999999999999999999999999999999999999999886543 4
Q ss_pred HhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhh
Q psy7924 79 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAIL 151 (481)
Q Consensus 79 ~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 151 (481)
+++ .+ ++.|++. |.+.+...+.... +++|++..+..+... .+|..
T Consensus 93 ~~~--~~----l~~~~l~--G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~lG~~ 144 (410)
T TIGR00885 93 NYT--LF----LVGLFIL--TAGLGFLETAANPYILVMGPESTATRRLNLAQSFN--------------------PFGSI 144 (410)
T ss_pred cHH--HH----HHHHHHH--HhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHH--------------------HHHHH
Confidence 677 88 9999999 9988877654333 466788888887777 77777
Q ss_pred hhhhhhhhhhhhhHh-----------------hccchhhHHHHHHHHhhHHHHHHHHHHhc--cCCChhHHhhcCcHHHH
Q psy7924 152 CPISISQSRRLAQVI-----------------KERKFEASVYGLSIICALLPIFFVGLMLL--MPESPQFHLKKNRVKQA 212 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~-----------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a 212 (481)
+++.+.......... ....+..+||+.|++.+++.++..+...+ .||.++ + +
T Consensus 145 ~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~-----~--~-- 215 (410)
T TIGR00885 145 IGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH-----S--D-- 215 (410)
T ss_pred HHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----c--c--
Confidence 777766322111000 00113457999999888877765544433 443210 0 0
Q ss_pred HHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCC
Q psy7924 213 KESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSS 292 (481)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 292 (481)
+++...+.+.++.+|+|+.+...+ ..++.... ......+.+.+.++.+.+
T Consensus 216 -------------------------~~~~~~~~~~~~~~~~~~~~~~~l-~~f~yvg~----e~~~~s~l~~y~~~~~~~ 265 (410)
T TIGR00885 216 -------------------------AKQISFSASLSRLARIRHYREGVI-AQFFYVGV----QIMCWTFIIQYAVRLIPG 265 (410)
T ss_pred -------------------------cccccchhhHHHHHhChhHHHHHH-HHHHHHHH----HHHHHHHHHHHHhhccCC
Confidence 000011113345666664433222 22222222 222223344444443322
Q ss_pred Cc---hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHH
Q psy7924 293 LN---PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFII 369 (481)
Q Consensus 293 ~~---~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (481)
.+ .............+|+++.+++.||+++|+.+..+.....+..++.... + . ........+.+.
T Consensus 266 ~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~~----------~-~-~~~~~~l~~~gl 333 (410)
T TIGR00885 266 MTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIFA----------G-G-HVGLYCLTLCSA 333 (410)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHc----------C-C-hHHHHHHHHHHH
Confidence 21 1223444446678999999999999999998888877777776666542 1 1 122344445555
Q ss_pred HHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh------cCChhHHH
Q psy7924 370 VFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL------GGHGAFWI 429 (481)
Q Consensus 370 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~------g~~~~~~~ 429 (481)
+.+..+ |..+....+..+++.+..+.++.... +|+++.|++.|.+.|.. +.+..|.+
T Consensus 334 f~s~~f-p~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~ 396 (410)
T TIGR00885 334 FMSLMF-PTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMKEIAAAPAVNTSFIL 396 (410)
T ss_pred HHHHHH-HHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHhcccccCccchHHHH
Confidence 555555 55568888888877655555555543 99999999999999954 35555554
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-26 Score=201.83 Aligned_cols=339 Identities=14% Similarity=0.038 Sum_probs=215.1
Q ss_pred cccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhH
Q psy7924 11 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPV 90 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 90 (481)
..+.+++ ++|++++..|++.+.+.+.+.+.+|+.|+++|||.||+++.+|..++.++.+.++++..+| ++ +
T Consensus 55 v~~~v~~---~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs~~Fw--q~----~ 125 (493)
T KOG1330|consen 55 VLKEVQT---YFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFSNHFW--QV----L 125 (493)
T ss_pred hhHHHHH---hcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHHHHHH--HH----H
Confidence 4455556 8999999999999999999999999999999999999999999999999999999999999 99 9
Q ss_pred HHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Q psy7924 91 VGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA 163 (481)
Q Consensus 91 ~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 163 (481)
+.|.+. |+|.+...+..+. ..+|++..++.+... .+|..++...+
T Consensus 126 l~R~~v--GiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~i--------------------pvGsglG~vvg------ 177 (493)
T KOG1330|consen 126 LCRGFV--GIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAI--------------------PVGSGLGYVVG------ 177 (493)
T ss_pred HHHHHh--ccchhhhcccchhHhhhcCcchhhhHHHHHhhhhc--------------------ccccceeEEee------
Confidence 999999 9999999988888 788999999999999 88877777776
Q ss_pred hHhhccchhh-HHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhc
Q psy7924 164 QVIKERKFEA-SVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKER 241 (481)
Q Consensus 164 ~~~~~~~~~~-~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (481)
....... .|||.|++.++++++..++.+ +.+|.+|- ..++..+ ++. ......
T Consensus 178 ---s~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~~~-------~~~-----------~~~~~t 231 (493)
T KOG1330|consen 178 ---SVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEVDG-------ENK-----------MVKPFT 231 (493)
T ss_pred ---eeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccccc-------CCc-----------CCCCcc
Confidence 2222333 399999999999999888777 56665421 1111000 000 000001
Q ss_pred cCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHH----hhhcCCCCchh-HHHHHHHHHHHHHHHHHHHH
Q psy7924 242 SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI----FKDAGSSLNPN-LCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~g~~~~~~-~~~~~~~~~~~~~~~~~g~l 316 (481)
...++.+...|++.+....+-.....+. ...+.++.|.. .+-.+.+.+.. ....+...++.+|.+++|.+
T Consensus 232 s~~kDl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~lGvl~Ggii 306 (493)
T KOG1330|consen 232 SVWKDLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGSLGVLFGGII 306 (493)
T ss_pred chHHHHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhchhhheehHHH
Confidence 1112333444544333333333322222 23333343332 23345555444 46666777889999999999
Q ss_pred HHHhCCh----HHHHHHHHHHHHHHHHHHHHHhh-cCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc
Q psy7924 317 VDRLGRR----ILLLVSAVIMALSTLTMGYYFYL-KNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI 391 (481)
Q Consensus 317 ~d~~grr----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~ 391 (481)
+||+.|+ ......-+.++.+......+... .... ....+..++++.+........+.+.. -+..|+.|++.
T Consensus 307 sd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~~~---~~s~~~~~il~~~g~~~~~~~~a~n~-~i~l~vV~p~~ 382 (493)
T KOG1330|consen 307 SDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPAFT---SSSMIFGLILFLVGETISWFNWATNN-PIFLEVVPPSR 382 (493)
T ss_pred HHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHhhh---hHHHHHHHHHHHHHHHHHhccccccc-ceeeEecCccc
Confidence 9995331 11122222221111111111100 0000 11222222222222222233344443 45569999999
Q ss_pred hhhHHHHHHHHHHHHHHH-HHhHHHHHHHhh
Q psy7924 392 KGIAVSIACLFNWVSVLV-VTKFFGDVTLLL 421 (481)
Q Consensus 392 r~~~~g~~~~~~~~g~~~-~~~~~~~~~~~~ 421 (481)
|.++.++...+..+.+-. +|.+.|.+.|+.
T Consensus 383 Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l 413 (493)
T KOG1330|consen 383 RTTAYALDTVFEHIFGDAASPYIVGILSDKL 413 (493)
T ss_pred ccHHHHHHHHHHHHhccCCCcceehhHHHHh
Confidence 999999988776655544 555888888764
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=201.42 Aligned_cols=345 Identities=12% Similarity=0.040 Sum_probs=223.0
Q ss_pred ccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHH
Q psy7924 12 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVV 91 (481)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 91 (481)
++.+.+ |++.++.+.+++.+.+.+++.+..++.|+++||+|||++++.+.+++.++++.+.++.+ . ++
T Consensus 26 ~~~~~~---~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~~~-----~----~~ 93 (393)
T PRK11195 26 AIALLK---ELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFGIH-----P----LL 93 (393)
T ss_pred HHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHHHH-----H----HH
Confidence 344556 88999999999999999999999999999999999999999999999998888776544 2 56
Q ss_pred HHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhh
Q psy7924 92 GNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQ 164 (481)
Q Consensus 92 ~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 164 (481)
.|+++ |++.+...+.... +++|+++.+..+... .+|..+++.++..
T Consensus 94 ~r~l~--G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~--------------------~~~~~~Gp~lgG~----- 146 (393)
T PRK11195 94 AYGLV--GIGAAAYSPAKYGILTELLPGEKLVKANGWMEGST--------------------IAAILLGTVLGGA----- 146 (393)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH-----
Confidence 78999 9999888777654 678999999988888 7777777777621
Q ss_pred HhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCc
Q psy7924 165 VIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDK 244 (481)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (481)
..+ ..|+..+.+.+...++..+....+||+|+....++. + ..+. .++. +
T Consensus 147 ----l~~-~~~~~~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~--------------~~~~----------~ 195 (393)
T PRK11195 147 ----LAD-PHAEAALAVCALIYLLAALFNLFIPRLGARRPGQSW-N-PIAL--------------LRDF----------F 195 (393)
T ss_pred ----HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCC-C-HHHH--------------HHHH----------H
Confidence 112 237777776665555444455568887632110000 0 0000 0000 0
Q ss_pred cchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q psy7924 245 VPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRR 323 (481)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr 323 (481)
...++++++|..+.........+... .......+++..+..|.++ +.+.......++.++++++.+++.||.++|
T Consensus 196 ~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~~~~l~~~~~~~ 271 (393)
T PRK11195 196 HACRVLWRDKLGRFSLAGTTLFWGAG----ATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGAAARLVTLETVL 271 (393)
T ss_pred HHHHHHHhCchhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 11245566654333222222111111 1111222233334467776 567788888889999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc-hhhHHHHHHHH
Q psy7924 324 ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI-KGIAVSIACLF 402 (481)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~ 402 (481)
+.+..+.. .++....+.. .++.+.......+.+.+.+....+.. +...|..|++. +|++.++.+..
T Consensus 272 ~~~~~g~~-~~~~~~~~~~-----------~~~~~~~~~~~~~~G~~~g~~~~~~~-~~~q~~~~~~~~~g~~~a~~~~~ 338 (393)
T PRK11195 272 RVLPAGIL-MGLVVLLMAL-----------QHSLLPAYPLLILIGALGGFFVVPMN-ALLQHRGHVLVGAGHSIAVQNFN 338 (393)
T ss_pred chHHHHHH-HHHHHHHHHH-----------HhHHHHHHHHHHHHHHhhhhhhhhHH-HHHHhhCcccccchhHHHHHhHH
Confidence 87766643 3332222222 12223333334344454444444444 56667766654 79999999999
Q ss_pred HHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 403 NWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 403 ~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
++++..++..+.+ ..+..|-+..+.+.+...++...+.+.+
T Consensus 339 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (393)
T PRK11195 339 ENLAMLLMLGLYS-LLVKLGVPVVAVIVGFGLLVALAMALLW 379 (393)
T ss_pred HHHHHHHHHHHHH-HHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998888 4477788777766555555555544444
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-25 Score=204.31 Aligned_cols=345 Identities=12% Similarity=0.051 Sum_probs=220.6
Q ss_pred cccccccccc-ccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 6 GWTSPAGDRL-IAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 6 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
+...|.+|.. .+ ++|.+..+.|++.+.+.++..+++++.|+++||+|||+++.++.++..++.++..++++++ .
T Consensus 24 ~~~~~~l~~~l~~---~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~--~ 98 (395)
T PRK10054 24 GATLPFMTIYLSR---QYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLVNNVT--L 98 (395)
T ss_pred HHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHhHHH--H
Confidence 3345555544 45 7999999999999999999999999999999999999999999999999999999999988 7
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |.+.+...+.... +++|++..++..... .+|..+++.++
T Consensus 99 ~----~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------~lg~~igp~l~ 152 (395)
T PRK10054 99 V----VLFFALI--NCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTML--------------------NIGWTVGPPLG 152 (395)
T ss_pred H----HHHHHHH--HHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHH--------------------HHHHHHHHHHH
Confidence 7 7778877 6655443332222 556888888888887 88888887777
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
.. . ...+|+..|++.++..++..+... ++||+++- ++.+
T Consensus 153 ~~---------l-~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~-------------------------- 192 (395)
T PRK10054 153 TL---------L-VMQSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATE-------------------------- 192 (395)
T ss_pred HH---------H-HHhccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccc--------------------------
Confidence 21 1 124799999988877766544443 35554210 0000
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
++ +..+.++.+|++..+......+...... .........+.+.. ++.+.+. ..+.......+.........++
T Consensus 193 --~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~ 266 (395)
T PRK10054 193 --TG--SVWSPSVLLQDKALLWFTCSGFLASFVS-GAFASCISQYVMVV-ADSDFAEKVVAVVLPVNAAMVVSLQYSVGR 266 (395)
T ss_pred --hh--hhhhhhhhccCceehHHHHHHHHHHHHH-HHhhhhHHHHHHHh-cccchHHHHHHHHHHhhhhheeeehhHHHH
Confidence 00 0011245566665444333322222211 11111112222221 2223322 2233444444555566678889
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH
Q psy7924 316 IVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA 395 (481)
Q Consensus 316 l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~ 395 (481)
+.||.++|+.+..+..+..++...+... .++.+...+...+++.+.... .+....++.+..|++.|+++
T Consensus 267 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~g~~~~-~p~~~~~~~~~~p~~~~~~~ 335 (395)
T PRK10054 267 RLNAANIRPLMTAGTLCFVIGLVGFIFS----------GNSLLLWGMSAAVFTVGEIIY-APGEYMLIDHIAPPGMKASY 335 (395)
T ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHc----------chHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHhCCcccceeh
Confidence 9999999998888877777766555431 112222333344444443322 33445678899999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHH
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV 439 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 439 (481)
.+..+ ...+|..++|.+.|.+.|+.|+...+.+.+....+.-+
T Consensus 336 ~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~ 378 (395)
T PRK10054 336 FSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWL 378 (395)
T ss_pred HhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHH
Confidence 88655 67799999999999999999887777665544444333
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=199.71 Aligned_cols=339 Identities=14% Similarity=0.021 Sum_probs=217.5
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccch----hhhhhhhhhHHHHhHHHHHHHHh
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRK----NTMLLLAVPTVTESDLSFIGSSM 80 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr----~~~~~~~~~~~~~~~~~~~~~~~ 80 (481)
.|...|.+|.+.+ |+|.|.+++|++.+++.++..++++++|+++||+||| +.+.+...+ ........++++
T Consensus 20 ~g~~~p~l~~~l~---~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 94 (382)
T PRK11128 20 YGVFLPFWSVWLK---GQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLL--FAVAFWFGAHSF 94 (382)
T ss_pred HHHHhhhHHHHHH---hcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHH--HHHHHHHhcccH
Confidence 5677889999999 9999999999999999999999999999999999994 333322221 122233345677
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
+ .+ ++.|++. |.+.+...+.... .++|++..+...... .+|..+++.
T Consensus 95 ~--~l----~i~~~l~--g~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~--------------------~lg~~igp~ 146 (382)
T PRK11128 95 W--LL----FVAIGLF--NLFFSPLVPLTDALANTWQKQIGLDYGKVRLWG--------------------SIAFVIGSA 146 (382)
T ss_pred H--HH----HHHHHHH--HHHHcccccHHHHHHHHHHhhccCCcchHHHHH--------------------HHHHHHHHH
Confidence 7 88 8899998 8777666554332 556677666666666 667777766
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN 235 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 235 (481)
++ +...+..+||..|++.++..++..+...+.||.++ +++.+
T Consensus 147 lg---------g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~----~~~~~------------------------- 188 (382)
T PRK11128 147 LT---------GKLVSWFGEQAILWILTAGVASMLLGQLLRPTIMP----QGESR------------------------- 188 (382)
T ss_pred HH---------HHHHHHcChhHHHHHHHHHHHHHHHHHHccCCCCC----ccccc-------------------------
Confidence 66 22225679999998877655544443334554321 00000
Q ss_pred hhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 236 SLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
+++++...++++.+|+|..+......+..... ......+.+.+.++.|.+. +.+.......+..++..++.+
T Consensus 189 --~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g 261 (382)
T PRK11128 189 --QQESAGWPAWKALLKEPTVWRFLLCVSLLQGS-----HAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVLIFAFSN 261 (382)
T ss_pred --cccccccchHHHHHcChhHHHHHHHHHHHHHH-----hHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 00011123567788886544433322222211 1222233344445677776 456666667778888889999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh
Q psy7924 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI 394 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 394 (481)
++.||+++|+.+..+.+..+++.+.... .++.+...+...+.++..+...... ..+..+. +++++++
T Consensus 262 ~l~~r~~~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~-~~~~~~~ 328 (382)
T PRK11128 262 RLFRRWSARDLLLLSAICGVVRWGLMGS-----------TTALPWLIVIQILHCGTFTVCHLAA-MRYIAAR-PGSEVIR 328 (382)
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHHHHHh-----------hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHhhhHH
Confidence 9999999999988888877776655543 2233444444555555555443333 3666665 5566788
Q ss_pred HHHHHHHH-HHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHH
Q psy7924 395 AVSIACLF-NWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAA 435 (481)
Q Consensus 395 ~~g~~~~~-~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 435 (481)
..++.+.. ...|..++|.+.|.+.|..|+ ..+...+++.+
T Consensus 329 ~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~-~~~~~~~~~~~ 369 (382)
T PRK11128 329 LQALYSALAMGGSIAIMTVLSGFLYQHLGA-GVFWVMALVAL 369 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHH
Confidence 88887644 456778999999999999876 45554444443
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-24 Score=199.81 Aligned_cols=355 Identities=13% Similarity=0.119 Sum_probs=215.0
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHH---HHH----
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSF---IGS---- 78 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~---- 78 (481)
+...|.+|...++ ++|.++.+.+++.+++.++..+++++.|+++||+|||+.++.+....+++..... +.+
T Consensus 19 ~~~~~~~~~~~~~--~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (396)
T TIGR00882 19 SAYFPFFPIWLHD--VNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQS 96 (396)
T ss_pred HHHHHHHHHHHHH--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3445666665441 6899999999999999999999999999999999999999887766655443221 111
Q ss_pred -HhHHhHhhhhhHHHHhhccccccceeeeeeccc-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhh
Q psy7924 79 -SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILC 152 (481)
Q Consensus 79 -~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 152 (481)
... .. ++.|++. |.+.+...+.... .++++...+...... .+|..+
T Consensus 97 ~~~~--~~----~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------~~g~~~ 148 (396)
T TIGR00882 97 NILV--GA----IVGGLYL--GFVFSAGAGAIEAYIEKVSRNSNFEYGKARMFG--------------------CVGWAL 148 (396)
T ss_pred HHHH--HH----HHHHHHH--HHHhccchhhHHHHHHHhhhhcccccchhhhhc--------------------ccHHHH
Confidence 122 33 5667777 7666555444433 122222333333333 666666
Q ss_pred hhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHH
Q psy7924 153 PISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT 231 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (481)
++.++. .. ...+||..|++.+...++..+..+. .||+|+. ++..+.
T Consensus 149 g~~~~g---------~l-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---------------- 195 (396)
T TIGR00882 149 CASIAG---------IL-FSIDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVANA---------------- 195 (396)
T ss_pred HHHHHh---------hh-hccCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhhcc----------------
Confidence 666651 11 2348999999988888776655554 4544321 000000
Q ss_pred HHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh----cCCCC-chhHHHHHHHHHH
Q psy7924 232 DMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD----AGSSL-NPNLCTIIVGTIM 306 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~-~~~~~~~~~~~~~ 306 (481)
. +.++++.+.++.++.+|+|..+...+..+.... .+.....+.+.+.++ .+.+. ..+.......+..
T Consensus 196 --~-~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~~~i~~ 267 (396)
T TIGR00882 196 --L-GANASAFSLKLALELFRQRKFWMFVLYVVGVAC-----VYDVFDQQFANFFTSFFATPQQGTRVFGYVTTMGELLN 267 (396)
T ss_pred --c-ccccCCCCHHHHHHHHcCCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHH
Confidence 0 000111122346678888654332222211111 111121122322222 23332 2345566667778
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhccc
Q psy7924 307 MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEI 386 (481)
Q Consensus 307 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~ 386 (481)
.++.+..+++.||+|||+.+..+..+.++....... ..+.+.......+.+.+..... .....+..+.
T Consensus 268 ~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~ 335 (396)
T TIGR00882 268 ALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF-----------ATTALEVVILKMLHAFEVPFLL-VGCFKYITSQ 335 (396)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh-----------cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHh
Confidence 888899999999999999988888777776655433 1223333333333333322211 1223456677
Q ss_pred CcccchhhHHHH-HHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy7924 387 FPSQIKGIAVSI-ACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYI 443 (481)
Q Consensus 387 ~p~~~r~~~~g~-~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (481)
.|++.++++.+. .+....+|+.+++.+.|.+.|..|++..|.+.+++.++.+++..+
T Consensus 336 ~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~ 393 (396)
T TIGR00882 336 FDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLISVF 393 (396)
T ss_pred CCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 888888887766 567889999999999999999999999998888887777665543
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-24 Score=200.61 Aligned_cols=325 Identities=15% Similarity=0.081 Sum_probs=206.8
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVF 86 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (481)
...|.+|.+.+ ++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.+.+.++++++ .+
T Consensus 26 ~~~p~~~~i~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~--~l- 99 (394)
T PRK11652 26 IYVPAIADMAR---DLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFAHSLT--VL- 99 (394)
T ss_pred HHhccHHHHHH---HhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHHccHH--HH-
Confidence 45677888888 9999999999999999999999999999999999999999999999999999999999998 88
Q ss_pred hhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
++.|++. |++.+...+.... .++++...+....+. .++..+++.++
T Consensus 100 ---~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~g~~i~-- 152 (394)
T PRK11652 100 ---IAASAIQ--GLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGI--------------------LVSPLLAPLIG-- 152 (394)
T ss_pred ---HHHHHHH--HhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHH--
Confidence 9999999 8877654333222 355666666666666 66666666655
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhh
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE 238 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
+......+||+.|++.++..++..+.. ++.||+++.. .+ +
T Consensus 153 -------~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~---------------------------- 193 (394)
T PRK11652 153 -------GLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---AR-R---------------------------- 193 (394)
T ss_pred -------HHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cc-h----------------------------
Confidence 112245689999999887766554433 4578765210 00 0
Q ss_pred hhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy7924 239 KERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~l 316 (481)
++.+.++++.++++..+......+ .... .......+.+.+.++ .|.+. ..+.......++..++..+.+++
T Consensus 194 --~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~l 266 (394)
T PRK11652 194 --TRVLASYRTLLSNRRFNCYLLMLI-GTLA----GIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRP 266 (394)
T ss_pred --hHHHHHHHHHHcChHHHHHHHHHH-HHHH----HHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001123445666654333222211 1111 112222233334443 67765 44555556667777888888888
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHH
Q psy7924 317 VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAV 396 (481)
Q Consensus 317 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 396 (481)
.||.+++... ......++.+......... ....+.......+.+.+.+... +....+..|.+| +.++++.
T Consensus 267 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~-~~~g~~~ 336 (394)
T PRK11652 267 NKRFSTLMWQ--SVICCLLAGLLMWIPGWFG------VMNVWTLLVPAALFFFGAGMLF-PLATSGAMEPFP-YLAGTAG 336 (394)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhcc-ccchHHH
Confidence 8888733222 2222222222211110000 1122333344444444444433 333466678887 5789999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHh
Q psy7924 397 SIACLFNWVSVLVVTKFFGDVTLL 420 (481)
Q Consensus 397 g~~~~~~~~g~~~~~~~~~~~~~~ 420 (481)
++.+....+|..+++.+.+.+.+.
T Consensus 337 ~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 337 ALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCC
Confidence 999999999999999888766544
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.3e-25 Score=202.01 Aligned_cols=331 Identities=15% Similarity=0.059 Sum_probs=203.4
Q ss_pred ccccccc-cccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH-HhHHhHh
Q psy7924 8 TSPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS-SMALGAV 85 (481)
Q Consensus 8 ~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 85 (481)
..|.+|. +.+ ++|+|+.+.+++.+++.+++.+++++.|+++||+|||+++.++.++..++.+++++++ +++ .+
T Consensus 20 ~~~~~~~~~~~---~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~--~~ 94 (366)
T TIGR00886 20 FSPLAVQMIKD---DLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYS--VL 94 (366)
T ss_pred hHHhhhHHHHH---HhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhhhHH--HH
Confidence 4667785 777 9999999999999999999999999999999999999999999999999999999999 988 88
Q ss_pred hhhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 86 FGSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 86 ~g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
+++|++. |++.+...+.... +++|+...+...... .+|..+++.+...
T Consensus 95 ----~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~i~~~ 148 (366)
T TIGR00886 95 ----LLLRLFI--GIAGGSFASCMPWISFFFPKKIQGTALGLAAGWG--------------------NMGGGVAQFVMPP 148 (366)
T ss_pred ----HHHHHHH--HHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHh--------------------HHHHHHHHHHHHH
Confidence 9999999 8876543222211 567888888877655 5555555544421
Q ss_pred hhhhhHhhc--cchhhHHHHHH-HHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHH
Q psy7924 160 RRLAQVIKE--RKFEASVYGLS-IICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN 235 (481)
Q Consensus 160 ~~~~~~~~~--~~~~~~w~~~~-~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 235 (481)
... ..... .....+||+.+ +..++...+..+.. .+.+|+|+.. + ++.+.. ..+...
T Consensus 149 l~~-~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~-----~~~~~~--------- 208 (366)
T TIGR00886 149 IIG-SLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----P-ATGKLS-----FKGARW--------- 208 (366)
T ss_pred HHH-HHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCccc----c-cchhcc-----cccccc---------
Confidence 110 00000 01234799998 44344444433333 3567765311 0 000000 000000
Q ss_pred hhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHHHHHHHHHHHHHHHH
Q psy7924 236 SLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCTIIVGTIMMVTTWIA 313 (481)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 313 (481)
..+++...+.++.+++++.+...+. .... .........+.|.+. +..|.+. +.+.......+..+++.++.
T Consensus 209 --~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 281 (366)
T TIGR00886 209 --SVGTGALGDQLKVFRDRHTWILALL----YSVT-FGSFLGVSSIFAMFFKDQFGLSKVTAGAYASLGGLLGSLARPLG 281 (366)
T ss_pred --cccchhHHHHHHHHhccchhhHHHH----HHHH-HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhhcc
Confidence 0000001134456666543322211 1111 111223333444444 4567776 55667777788889999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc-cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccch
Q psy7924 314 TMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN-IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIK 392 (481)
Q Consensus 314 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 392 (481)
++++||+|||+.+..+......+...+.... . .. ..+...........+.+.+... .+...+|..| +++
T Consensus 282 g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~-~~~ 351 (366)
T TIGR00886 282 GAISDRLGGARKLLMSFLGVAMGAFLVVLGL---V-----SPLSLAVFIVLFVALFFFSGAGNGS-TFALVPHIFR-RAT 351 (366)
T ss_pred chHHHhhccchhHHHHHHHHHHHHHHHHhcC---C-----CcchHHHHHHHHHHHHHHhccccch-hhhcchhhch-hhc
Confidence 9999999998877777666655555443321 0 10 2222233333344444444443 3477778887 689
Q ss_pred hhHHHHHHHHHHHH
Q psy7924 393 GIAVSIACLFNWVS 406 (481)
Q Consensus 393 ~~~~g~~~~~~~~g 406 (481)
|++.|+.+..+++|
T Consensus 352 g~~~g~~~~~~~~g 365 (366)
T TIGR00886 352 GAVSGLVGAIGNLG 365 (366)
T ss_pred ccHHHHHHHhccCC
Confidence 99999999888765
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=197.63 Aligned_cols=353 Identities=16% Similarity=0.053 Sum_probs=217.5
Q ss_pred ccccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccc-----cchh-hhhhhhhhHHHHhHHHH
Q psy7924 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKN-TMLLLAVPTVTESDLSF 75 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~-~~~~~~~~~~~~~~~~~ 75 (481)
|+.+++..+.+|.+.+ +.|+|.+|+|++..+... .+..+++|+++||+ |||| .+.++..+.+++....+
T Consensus 12 ~~~~~~~~~~~~~~l~---~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~ 86 (402)
T PRK11902 12 GLPLALTSGTLQAWMT---VEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA 86 (402)
T ss_pred hhhHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence 5667888899999999 899999999999777776 58899999999999 8876 68888888877777777
Q ss_pred HHH---HhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccccccc
Q psy7924 76 IGS---SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGS 145 (481)
Q Consensus 76 ~~~---~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (481)
+.+ +++ .+ ++..++. +...+...+.... +++|+++.++...+.
T Consensus 87 ~~~~~~~~~--~l----~~~~~~~--~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~------------------- 139 (402)
T PRK11902 87 FCPPHAALW--PL----AGLAVLV--AFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGY------------------- 139 (402)
T ss_pred hcCccchHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHH-------------------
Confidence 763 344 55 5555555 5444433333222 666999999998888
Q ss_pred ccchhhhhhhhhhhhhhhhHhhccch-hhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCc
Q psy7924 146 DHLAILCPISISQSRRLAQVIKERKF-EASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEY 224 (481)
Q Consensus 146 ~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~ 224 (481)
.+|..++..+... ... ..+||..|++.++..++..+..++.||+++.. ++.++.
T Consensus 140 -~~g~i~g~~l~~~---------l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~~~---~~~~~~------------ 194 (402)
T PRK11902 140 -RLAMLVSGGLALW---------LADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEVPA---RPPRSL------------ 194 (402)
T ss_pred -HHHHHHHhHHHHH---------HHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcccc---cccchh------------
Confidence 7888777766521 112 24899999998888776666555678765320 000000
Q ss_pred cchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHH
Q psy7924 225 DIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVG 303 (481)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 303 (481)
+++.+.++++.+|+|..+......+....... ....+..+++.++.|.+. +.+......+
T Consensus 195 ---------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~~ 255 (402)
T PRK11902 195 ---------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTLG 255 (402)
T ss_pred ---------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHHH
Confidence 00011245567777644433322222221111 111233455556677776 3444443433
Q ss_pred -HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHh---hccCchh
Q psy7924 304 -TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFS---LGFGPIP 379 (481)
Q Consensus 304 -~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 379 (481)
++.+++.++.+++.||+|+|+.+..+.....+..+.+...... .++.+.......+..+..+ ....+..
T Consensus 256 ~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 328 (402)
T PRK11902 256 LAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVT-------PKHLWTMALAIGIENLCGGMGTAAFVALL 328 (402)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc-------CCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999998877666655554433221110 1112222222222111111 1122333
Q ss_pred hhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy7924 380 WMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 380 ~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
..++.+.+|.+.+ ++.+....++...++.+.|.+.|..||+..|.+.+.++++...+.
T Consensus 329 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 329 MALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 4667777775544 455555567777677789999999999888877776666654444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=195.82 Aligned_cols=335 Identities=15% Similarity=0.073 Sum_probs=206.7
Q ss_pred cccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc----ccchh-hhhhhhhhHHHHhHHHHHHHHhH----Hh
Q psy7924 13 DRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKN-TMLLLAVPTVTESDLSFIGSSMA----LG 83 (481)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~----~Grr~-~~~~~~~~~~~~~~~~~~~~~~~----~~ 83 (481)
+.+.+ ++|+++.++|++.++..+..++..|+.|+++|| +|||| .++.+....+++.+++...++.. ..
T Consensus 24 ~~~~~---~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~ 100 (437)
T TIGR00792 24 FFYTD---VLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLV 100 (437)
T ss_pred HHHHH---ccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHH
Confidence 44555 789999999999999999999999999999997 68744 67778888888887777665421 11
Q ss_pred HhhhhhHHHHhhccccccceeeeee------cc--ccccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLA------VP--SFDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~------~~--~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
.+ ++.+++. +.+.+...+. .. .+++|++..+....+. .+|..++..
T Consensus 101 ~~----~~~~~~~--~~~~~~~~~~~~al~~~~~~~~~~R~~~~~~~~~~~--------------------~~g~~l~~~ 154 (437)
T TIGR00792 101 YA----YITYILL--GLFYSFVNIPYWSLVPAITLDPRERESLSTFRRFGA--------------------TLGGLLVAV 154 (437)
T ss_pred HH----HHHHHHH--HHHHHhhcccHhhCcccccCCHHHHHHHHHHHHHHH--------------------HHHHHHHHH
Confidence 33 5555665 5544432211 11 1578888888877777 676665554
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (481)
+..+.. ...+......+||+.+.+.+++.++..+..+ ..||.++. .+.+
T Consensus 155 ~~~~l~--~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~----~~~~------------------------ 204 (437)
T TIGR00792 155 IVLPLV--SYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE----IPKN------------------------ 204 (437)
T ss_pred HHHHHH--HHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC----CCcc------------------------
Confidence 432211 1111112356899999999888877766554 56775410 0000
Q ss_pred HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCCchhHHHHHHHHHHHHHHHHH
Q psy7924 235 NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSLNPNLCTIIVGTIMMVTTWIA 313 (481)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~ 313 (481)
.+++.+.++.+++.+++|.++......+..... ......+.+++.+. .+.+...+.......+..+++.++.
T Consensus 205 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~ 277 (437)
T TIGR00792 205 --IEKKLSLKQIFKALFKNDQLLILCLAYLFYNLA-----FNIKNGVQVYYFTYVLGDPELFSYMGSIAIVAGLIGVLLF 277 (437)
T ss_pred --cccCCCHHHHHHHHhCCHHHHHHHHHHHHHHHH-----HHHHcchhheeEeeecCChHHHHHHHHHHHHHHHHHHHHH
Confidence 000001122345666776443322222211111 12222233333332 2322233455566678889999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc-----
Q psy7924 314 TMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP----- 388 (481)
Q Consensus 314 g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p----- 388 (481)
++++||+|+|+.+..+..+..++.+.+.+. .++.+...+...+.+++.+... +..+++.+|..|
T Consensus 278 ~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~ 346 (437)
T TIGR00792 278 PRLVKKFGRKILFAGGILLMVLGYLIFFFA----------GSNLPLILVLIILAGFGQNFVT-GLVWALVADTVDYGEWK 346 (437)
T ss_pred HHHHHHhCcHHHHHHHHHHHHHHHHHHHHc----------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhhh
Confidence 999999999999988887777766655432 1122233333333444433332 444577777754
Q ss_pred --ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 389 --SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 389 --~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
++.+|+..|+.+....++..+++.+.+.+.+..|+.
T Consensus 347 ~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G~~ 384 (437)
T TIGR00792 347 TGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGYV 384 (437)
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 456799999999999999999999999999887764
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-23 Score=190.26 Aligned_cols=354 Identities=15% Similarity=0.139 Sum_probs=208.8
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
.+..++.+.. |+|- .+...|+.+.+.++.+++.++.|+++|.||||+.++.+.++..+|+++++-++|.. .+
T Consensus 63 ~a~~l~~I~~---diG~-~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~--~~-- 134 (599)
T PF06609_consen 63 PASILPYINA---DIGG-SDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCATAQNMN--TF-- 134 (599)
T ss_pred cHHHHHHHHH---hcCC-CccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhcCCcHH--HH--
Confidence 3556677777 8884 57889999999999999999999999999999999999999999999999999999 99
Q ss_pred hhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRR 161 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~ 161 (481)
+.+-.+. |++.|........ .+.|........... ......++.++
T Consensus 135 --iag~~l~--GvgaG~~~~~~~~isEl~p~k~R~~~~~~~~~~~--------------------i~~~~~~~~ia---- 186 (599)
T PF06609_consen 135 --IAGMVLY--GVGAGVQELAALAISELVPNKWRGLGLAIASIPF--------------------IITTWISPLIA---- 186 (599)
T ss_pred --HHHHHHH--HHhhHHHHHHHHHHHHhcccchhhhHhHHHHHHH--------------------HhhhcccHHHH----
Confidence 9999999 8877655433222 444544333222222 11111222222
Q ss_pred hhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhc--cCCChhHHhhcCc---HHHHHHHHHHH-----------------
Q psy7924 162 LAQVIKERKFEASVYGLSIICALLPIFFVGLMLL--MPESPQFHLKKNR---VKQAKESLQWF----------------- 219 (481)
Q Consensus 162 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~---~~~a~~~~~~~----------------- 219 (481)
.......+|||.|++..+...+.+++.++ .|.+ +...+++ ..+..+.+..+
T Consensus 187 -----~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~--~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLlgl~ 259 (599)
T PF06609_consen 187 -----QLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP--RAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLLGLS 259 (599)
T ss_pred -----HHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc--hhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 11114568999999998887766555442 3433 2222221 12222222221
Q ss_pred -hCC-Ccc--chHHHHHH-------H--HhhhhhccCccc--hHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHH
Q psy7924 220 -RGS-EYD--IDSEITDM-------Q--NSLEKERSDKVP--LMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVK 284 (481)
Q Consensus 220 -~~~-~~~--~~~~~~~~-------~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (481)
.+. .++ ..+..... . --.|.....+++ ..+++|+++ .+...+.+.+......+....+|+..
T Consensus 260 wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r---~~~~~lvi~fi~G~~~~s~~~l~p~~ 336 (599)
T PF06609_consen 260 WGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRR---GFAALLVISFISGMNFFSVNILWPQQ 336 (599)
T ss_pred ccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111 11111000 0 001111111222 346777642 23333333333333334445566665
Q ss_pred HhhhcCCCC----chhHHHHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy7924 285 IFKDAGSSL----NPNLCTIIVGTIMMVTTWIATMIVDRLGR-RILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359 (481)
Q Consensus 285 ~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (481)
....++.+. ..+......+.+..++.++.+.+..+++| |+.++++..++.+++..+... . .++...
T Consensus 337 ~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~~---~------~~n~~~ 407 (599)
T PF06609_consen 337 VVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAAV---R------PDNKNA 407 (599)
T ss_pred HhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHc---c------CCCcch
Confidence 555444443 23556677788888899999999999887 445556666665544444332 1 111112
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHH
Q psy7924 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDV 417 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~ 417 (481)
.+....+.+++.+....+. ...+.-..|++.-+++.|+..+++.+|+.++..+...+
T Consensus 408 ~i~~~~l~g~giG~~~~~~-~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I 464 (599)
T PF06609_consen 408 AIAFLVLAGFGIGGILVPA-IVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAI 464 (599)
T ss_pred HHHHHHHHHHhHHHHHHHH-HHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2333334444443333333 25556678999999999999999999999988877543
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=199.44 Aligned_cols=373 Identities=16% Similarity=0.173 Sum_probs=254.1
Q ss_pred cccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhH
Q psy7924 11 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPV 90 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 90 (481)
..+.+++ +++.+.++.+|+.++......+.+|+.+.+.||||.|++.+.|.++..+|.++..++++++ +++ +
T Consensus 68 ~~~~~~~---~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~--~l~---l 139 (509)
T KOG2504|consen 68 LFEELMD---YFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFATSLW--QLY---L 139 (509)
T ss_pred hHHHHHH---HhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHhhHH--HHH---H
Confidence 4466667 9999999999999999999999999999999999999999999999999999999999998 773 4
Q ss_pred HHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhh
Q psy7924 91 VGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQ 164 (481)
Q Consensus 91 ~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~ 164 (481)
..-++. |+|.++....... .++|+.+.++...+. ++|..+-+.+.
T Consensus 140 t~gvi~--G~G~~~~~~paiviv~~YF~kkR~lA~Gia~~Gs--------------------G~G~~~~~~l~------- 190 (509)
T KOG2504|consen 140 TFGVIG--GLGLGLIYLPAVVILGTYFEKKRALATGIAVSGT--------------------GVGTVVFPPLL------- 190 (509)
T ss_pred HHHHHh--hccchhhhcchhhhhhhHhHHHHHHHHhhhhccC--------------------CcceeeHHHHH-------
Confidence 555677 8888877665555 889999999988888 88888777666
Q ss_pred HhhccchhhHHHHHHHHhhHHHHHHHHHHhcc-CCChhHHhhcCcHHHHHHHHHHH--------h----CCCccchH---
Q psy7924 165 VIKERKFEASVYGLSIICALLPIFFVGLMLLM-PESPQFHLKKNRVKQAKESLQWF--------R----GSEYDIDS--- 228 (481)
Q Consensus 165 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~--------~----~~~~~~~~--- 228 (481)
.......|||+.+++.+.+.+-..+....+ |.+++-... .++..+..... + ..+.....
T Consensus 191 --~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (509)
T KOG2504|consen 191 --KYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERDSGLKKLSL 265 (509)
T ss_pred --HHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCCCCCCcccc
Confidence 344477899999999888876666555543 323211000 11100000000 0 00000000
Q ss_pred -HHHHHHHhhhhhc--cCccch----HHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHH
Q psy7924 229 -EITDMQNSLEKER--SDKVPL----MQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTI 300 (481)
Q Consensus 229 -~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 300 (481)
+.++.++...+.+ ..+... .++++++ .++.+.........++.....+.|.+..+.+++. +......
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~-----~fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~~~aa~l~S 340 (509)
T KOG2504|consen 266 SNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDP-----KFLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSSNDAAFLLS 340 (509)
T ss_pred cchhhhhhCCccccccchhhhhhhhhHHHHcCc-----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhhHHHHH
Confidence 0001111111111 111111 3566664 3333444444444456666777777778888887 7788999
Q ss_pred HHHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCch
Q psy7924 301 IVGTIMMVTTWIATMIVDRLGR--RILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPI 378 (481)
Q Consensus 301 ~~~~~~~~~~~~~g~l~d~~gr--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
+.++..++++++.|++.|+... +....++.+..+++...... ....+..+...++++...+. +..+
T Consensus 341 iigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~-----------~~~~~~l~~~~~~fG~~~g~-~~~l 408 (509)
T KOG2504|consen 341 IIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF-----------ATTYVGLIVFSILFGFCVGS-FSSL 408 (509)
T ss_pred HHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHH-HHHH
Confidence 9999999999999999999884 34445555555555544433 22333444444445444433 3334
Q ss_pred hhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHHHHH
Q psy7924 379 PWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 379 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 442 (481)
....+.|+.+.+.-..+.|+...+..++..++|++.|.+.|..+ |...|+..+...++++++.+
T Consensus 409 ~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~~~~ 473 (509)
T KOG2504|consen 409 TPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAVLLL 473 (509)
T ss_pred HHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHHHHH
Confidence 44677899999999999999999999999999999999999888 77777777766666665543
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=212.47 Aligned_cols=351 Identities=13% Similarity=0.003 Sum_probs=213.6
Q ss_pred CcccCc--hhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH---HHHhHHhHhhhhhHHHHhh
Q psy7924 21 PFLVTE--SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI---GSSMALGAVFGSPVVGNLV 95 (481)
Q Consensus 21 ~~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~g~~~~~r~~ 95 (481)
+++.+. ...+++.+++.+++.++++++|+++||+|||++++.+.++.+++.++..+ +++++ .+ +++|++
T Consensus 39 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~--~l----~~~r~l 112 (1146)
T PRK08633 39 AYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFW--LA----FAVTFL 112 (1146)
T ss_pred HcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHH--HH----HHHHHH
Confidence 455443 45799999999999999999999999999999999988776666655443 45677 88 999999
Q ss_pred ccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhc
Q psy7924 96 DTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKE 168 (481)
Q Consensus 96 ~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 168 (481)
. |++.+...+.... +++|+++.++...+. .+|.++++.++...........
T Consensus 113 ~--G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~ig~~lg~~l~~~l~~~~~~~~ 170 (1146)
T PRK08633 113 L--GAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFT--------------------IVAILAGTALFSFLFESVNGNT 170 (1146)
T ss_pred H--HHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHH--------------------HHHHHHHHHHHHHHHHhhcccc
Confidence 9 9998877766544 678999999999988 8888888777632110000000
Q ss_pred cchhhHHHHHHHHhhHH-HHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccch
Q psy7924 169 RKFEASVYGLSIICALL-PIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPL 247 (481)
Q Consensus 169 ~~~~~~w~~~~~~~~~~-~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (481)
.....+|++.+.+..+. .++.+++.+.+||+|+....+.+.++ ....+.....+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~ 225 (1146)
T PRK08633 171 PSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKKK-------------------------YLFPKLLWRNL 225 (1146)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCcccccccc-------------------------cccHHHHHHHH
Confidence 00012344444333333 33333444467887643111000000 00000001134
Q ss_pred HHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhCChHH
Q psy7924 248 MQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN--PNLCTIIVGTIMMVTTWIATMIVDRLGRRIL 325 (481)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~ 325 (481)
+.+++++..+..++...... ........++++++.+..|.+.. .+.......++.+++.++.+++.||+++++.
T Consensus 226 ~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~s~~~~~g~~~~~~~ig~~~g~~~~g~l~~r~~~~~~ 301 (1146)
T PRK08633 226 KLLRSDRVLWLAIIGLSYFW----FISQLAQANFPAYAKEVLGLDNTFQVQYLLAASAIGIGIGSLLAGRLSGRHIELGL 301 (1146)
T ss_pred HHHhcCcHHHHHHHHHHHHH----HHHHHHHHhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCceEccc
Confidence 45566653332222111111 11122333344455556777654 3567777778889999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHH
Q psy7924 326 LLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWV 405 (481)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 405 (481)
+.++.++.+++.+.+... .+.+..++..++++++.+....+. .+++.+..|++.||+++|+.+.+..+
T Consensus 302 ~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~rg~~~~~~~~~~~l 369 (1146)
T PRK08633 302 VPLGALGLALSLFLLPTA-----------PSLASVLVLFFLFGFSAGLFIVPL-NALIQFRAPEKELGKVLAANNFLQNV 369 (1146)
T ss_pred hhHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHHHHHHhhHHH-HHHHhhcCCccchhhhhHHHHHHHHH
Confidence 877777777666655442 222333444444555444444443 47888999999999999999999999
Q ss_pred HHHHHHhHHHHHHHhhcCC--hhHHHHHHHHHHHHHHH
Q psy7924 406 SVLVVTKFFGDVTLLLGGH--GAFWIFSVIAALGAVFT 441 (481)
Q Consensus 406 g~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~ 441 (481)
+..+++.+.+.+.. .++. ..+.+.+.+.++..++.
T Consensus 370 g~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ 406 (1146)
T PRK08633 370 GMLLFLALTTLFSG-LGLSPAGLFYLIALVTLIGTLYT 406 (1146)
T ss_pred HHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHHHHHHH
Confidence 98777766554433 3332 33444444433333333
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-23 Score=188.03 Aligned_cols=336 Identities=14% Similarity=0.061 Sum_probs=197.0
Q ss_pred ccccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccc-----cchhh-hhhhhhhHHHHhHHHH
Q psy7924 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNT-MLLLAVPTVTESDLSF 75 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~~-~~~~~~~~~~~~~~~~ 75 (481)
|+-++..++.+|.+.+ |+|+|.+|.+++.+. .+...+ .+++|+++||+ ||||. ++.+.++.++.....+
T Consensus 1 ~~~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~ 75 (356)
T TIGR00901 1 GLPLGLVGNTLPYWLR---SKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILS 75 (356)
T ss_pred CCCchhHHhHHHHHHH---HcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 4557788899999999 999999999999765 555555 89999999998 89997 4566777777766666
Q ss_pred HHH---HhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccccccc
Q psy7924 76 IGS---SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGS 145 (481)
Q Consensus 76 ~~~---~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (481)
+.+ +.+ .+ ....++. +.+.+...+.... +++|+++.+....+.
T Consensus 76 ~~~~~~~l~--~l----~~~~~~~--~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~------------------- 128 (356)
T TIGR00901 76 FLVPSTDLP--LL----AGLAFLI--AFFSATQDIALDAWRLEILSDEELGYGSTIYIVGY------------------- 128 (356)
T ss_pred cCCcchhHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHH-------------------
Confidence 653 333 44 4444455 4444332221111 788999999988888
Q ss_pred ccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCc
Q psy7924 146 DHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEY 224 (481)
Q Consensus 146 ~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~ 224 (481)
.+|.++++.++....... ........+||..|++.++..++..+..++ .||+++. .+.++
T Consensus 129 -~~G~~~~~~l~~~l~~~~-g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~----~~~~~------------- 189 (356)
T TIGR00901 129 -RAGMLLSGSLALVLASPE-FANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED----ASVPK------------- 189 (356)
T ss_pred -HHHHHHHHHHHHHHhhhc-ccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc----cccch-------------
Confidence 888888777762111000 000011234999999999887776665554 5664321 00000
Q ss_pred cchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHH
Q psy7924 225 DIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVG 303 (481)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~ 303 (481)
++ +++.+.++++.++++..++ .+............ +.....+.|.+.++.|++. +.+......+
T Consensus 190 ---~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~~~g~~~~~~~ 254 (356)
T TIGR00901 190 ---PL----------TQAVLKPIREFFQRKNMIQ-ALLLLLLIVLYKLG-DSAATVLTTLFLLDMGFSKEEIALVAKING 254 (356)
T ss_pred ---hH----------HHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHhHHHH
Confidence 00 0001113445555543111 22222222222222 2333344454545577776 3344444444
Q ss_pred -HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhh
Q psy7924 304 -TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWML 382 (481)
Q Consensus 304 -~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (481)
+..+++.++++++.||+|||+.+..+.++..+......+.....+...-..+..+.......+.+++.+..... ..++
T Consensus 255 ~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~ 333 (356)
T TIGR00901 255 LLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHHDGITFPHLLMLFLTITLEAVTGGLGTVA-FVAF 333 (356)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 56789999999999999999988888777766655443321000000000011222333333334444444434 4588
Q ss_pred hcccCcccchhhHHHHHHHHHH
Q psy7924 383 VGEIFPSQIKGIAVSIACLFNW 404 (481)
Q Consensus 383 ~~e~~p~~~r~~~~g~~~~~~~ 404 (481)
..|.+|+++||+..|+.+...+
T Consensus 334 ~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 334 LSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred HHHhcCCCccHHHHHHHHHHHh
Confidence 8999999999999999887654
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-22 Score=167.03 Aligned_cols=341 Identities=13% Similarity=0.096 Sum_probs=244.8
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVF 86 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (481)
...|.++++.+ |+|+|.++.|++.+...+...+.+++..+++.|+|.++.+..++++..+|+++-... +.. .+
T Consensus 30 svgPLL~~Ir~---~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~-~~~--~L- 102 (395)
T COG2807 30 SVGPLLDEIRQ---DLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG-GLP--LL- 102 (395)
T ss_pred hhhhhHHHHHH---HhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-cHH--HH-
Confidence 45688889998 999999999999999999999999999999999999999999999999999998877 444 56
Q ss_pred hhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhh
Q psy7924 87 GSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSR 160 (481)
Q Consensus 87 g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 160 (481)
+.+-.+. |.+.+......|. +++-+.+++.+.... ++|..++..+..+.
T Consensus 103 ---~~gt~l~--G~gIav~nVLLPslIK~~Fpk~~~~mtglYs~sl--------------------~~~aaLaa~lavpl 157 (395)
T COG2807 103 ---FLGTLLA--GAGIAVINVLLPSLIKRDFPKRVGLMTGLYSTSL--------------------GAGAALAAALAVPL 157 (395)
T ss_pred ---HHHHHHH--HhhHHHHHHhhhHHHHhhcccchhhHHhHHHHHH--------------------HHHHHHHhhhhhHH
Confidence 7778888 8888877777777 788889999999888 88888887777432
Q ss_pred hhhhHhhccchh-hHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 161 RLAQVIKERKFE-ASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 161 ~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
. .+ .+||....+-+.++++.++.++. ...|. + ...
T Consensus 158 a---------~~~~gW~~aL~~WAl~allAl~~WlP--q~~r~-----~----------------------------~~~ 193 (395)
T COG2807 158 A---------QHSGGWRGALGFWALLALLALLIWLP--QALRE-----Q----------------------------AAS 193 (395)
T ss_pred H---------HhhccHHHHHHHHHHHHHHHHHHHhh--hcccc-----c----------------------------ccc
Confidence 1 33 47999999999998887777652 21110 0 001
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD 318 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d 318 (481)
.+.+..+-..++|+|.-| ...+++..+...++....|.|.+..+.|++. +++.......+.+.+.++....+.+
T Consensus 194 ~~~~~~~~~~vw~~~~aW-----~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll~P~la~ 268 (395)
T COG2807 194 IATKLVSVRKVWRSPLAW-----QVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALLIPLLAR 268 (395)
T ss_pred cccccccccccccCchhH-----HHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 111222334567776333 2334445555557777888899999999998 7788888999999999999999999
Q ss_pred Hh-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcc-cCcccchhhHH
Q psy7924 319 RL-GRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGE-IFPSQIKGIAV 396 (481)
Q Consensus 319 ~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~~p~~~r~~~~ 396 (481)
|. ++|+.......++.++.+.+.+. +.+..... ..+++.+.+..+.... ..+.. .-.++.-+.-.
T Consensus 269 R~~n~r~~~~~~~~~~l~G~~G~~~~----------P~~~~~lw--~~llG~G~G~~F~laL-~li~~rs~~a~~Aa~LS 335 (395)
T COG2807 269 RSKNQRPLVVLALLLMLVGLVGLLLA----------PGQLPILW--ALLLGLGQGGAFPLAL-TLILLRSSDAAIAAALS 335 (395)
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHh----------hhhHHHHH--HHHHhCccchHHHHHH-HHHHhhcCChHHHHHHH
Confidence 75 46677777777777777766553 12222222 3444444343333222 33333 34456667788
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhcC-ChhHHHHHHHHHHHHHHH
Q psy7924 397 SIACLFNWVSVLVVTKFFGDVTLLLGG-HGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 397 g~~~~~~~~g~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~ 441 (481)
|+.+.++++-...+|.+.|.+.|..|. +.....+....++..+..
T Consensus 336 gmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~G 381 (395)
T COG2807 336 GMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFG 381 (395)
T ss_pred HHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998764 444444444444443333
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-22 Score=208.46 Aligned_cols=345 Identities=12% Similarity=0.058 Sum_probs=214.2
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhh---hhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccccce
Q psy7924 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL---LAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNT 103 (481)
Q Consensus 27 ~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~~~~ 103 (481)
...++..+++.+.+++.+++.|+++||+|||+++.. ..+......+.+...++++ .+ ++.|+++ |++.+
T Consensus 52 ~~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~--~l----~~~~~l~--gi~~a 123 (1140)
T PRK06814 52 ALVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVP--LL----FAALFLM--GIHSA 123 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HH----HHHHHHH--HHHHH
Confidence 457888999999999999999999999999997543 2233333333344457888 88 9999999 99988
Q ss_pred eeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHH
Q psy7924 104 MLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVY 176 (481)
Q Consensus 104 ~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~ 176 (481)
...+.... +++|+++.++.+.+. .+|.++++.++ +......+|+
T Consensus 124 ~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~--------------------~ig~~igp~l~---------g~l~~~~~~~ 174 (1140)
T PRK06814 124 LFGPIKYSILPDHLNKDELLGANALVEAGT--------------------FIAILLGTIIG---------GLATISGNFV 174 (1140)
T ss_pred hhchHHHHhhHhhcCccccchhhHHHHHHH--------------------HHHHHHHHHHH---------HHHHhccccH
Confidence 77766555 778899999999999 88888888887 3333567899
Q ss_pred HHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcch
Q psy7924 177 GLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAA 256 (481)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (481)
+.|+...+..++.++..+++|+++.- .++...+ .... +.....++...+++.+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---------------~~~~----------~~~~~~~~~~~~~~~~ 227 (1140)
T PRK06814 175 ILVALLMGIAVLGWLASLFIPKTGNA--APDLKID---------------RNII----------RSTITLLKYAKADKRI 227 (1140)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCCC--CCCCeec---------------cchH----------HHHHHHHHHHhcCchH
Confidence 99866666566555555567765411 0000000 0000 0001134555666543
Q ss_pred hhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy7924 257 KRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMAL 335 (481)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~ 335 (481)
+...+...... +.......+.++++.+..|.+. ..+.......++.+++.++.++++|+..+++.+..+.++.++
T Consensus 228 ~~~~~~~~~~~----~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~ 303 (1140)
T PRK06814 228 WLAILGISWFW----LVGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAVGSFLASKLSEGRITLLYVPIGALLMGL 303 (1140)
T ss_pred HHHHHHHHHHH----HHHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeeehHHHHHHHH
Confidence 33222222221 1112222333444444567776 567788888899999999999999888776665555555544
Q ss_pred HHHHHHHHHhhcCCCC---------CccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHH
Q psy7924 336 STLTMGYYFYLKNSGS---------DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVS 406 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 406 (481)
+.+.+.+......... ....+.+...+..++++++.+....+. .+++.+..|++.||+++|+.++...++
T Consensus 304 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~p~~~~G~v~g~~~~~~~~~ 382 (1140)
T PRK06814 304 FGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAGGLYIVPL-FAALQAWANPAHRARVIAANNVLNAAF 382 (1140)
T ss_pred HHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHHHHhHHHH-HHHHHhhCCcccceeeeHHHHHHHHHH
Confidence 4443322100000000 001223344444445555544444444 488889999999999999999999999
Q ss_pred HHHHHhHHHHHHHh-hcCChhHHHHHHHHHHHHHH
Q psy7924 407 VLVVTKFFGDVTLL-LGGHGAFWIFSVIAALGAVF 440 (481)
Q Consensus 407 ~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 440 (481)
..+++.+.+.+.+. .++...+.+.+.+.++.+..
T Consensus 383 ~~ig~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1140)
T PRK06814 383 MVAGTIILALLQALGFSIPWIILFIALANLIVAIL 417 (1140)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 99999998887743 34444444444433333333
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=184.62 Aligned_cols=385 Identities=10% Similarity=-0.034 Sum_probs=219.1
Q ss_pred ccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhh
Q psy7924 10 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGS 88 (481)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 88 (481)
.....+.+ ++|.++++.+++.+.+.....+..+++|+++|| +||||+++.+.+++.++++.++++++.. .+
T Consensus 36 ~l~~yl~~---~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~--~l--- 107 (489)
T PRK10207 36 ILAVFFVK---QLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKP--DL--- 107 (489)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHhccch--hH---
Confidence 34445556 899999999999999999888999999999999 9999999999999999999999987655 43
Q ss_pred hHHHHhhccccccceeeeeeccc-------cc--cccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhh
Q psy7924 89 PVVGNLVDTVGRKNTMLLLAVPS-------FD--IRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQS 159 (481)
Q Consensus 89 ~~~~r~~~~~G~~~~~~~~~~~~-------~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~ 159 (481)
++++|+++ |++.|...+.... ++ +|+...+....+. ++|..+++.++
T Consensus 108 l~~~~~l~--~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~--------------------nig~~~g~~l~-- 163 (489)
T PRK10207 108 IFIALGTI--AVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSI--------------------NIGSLISLSLA-- 163 (489)
T ss_pred HHHHHHHH--HhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHH--------------------HHHHHHHHHHH--
Confidence 05889999 9998887765554 22 4466777778887 88888877776
Q ss_pred hhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHH--hhcCcHHHHHHHH-------------HHHhCCCc
Q psy7924 160 RRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFH--LKKNRVKQAKESL-------------QWFRGSEY 224 (481)
Q Consensus 160 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l--~~~~~~~~a~~~~-------------~~~~~~~~ 224 (481)
+...+..+||+.|++.++..++..+.....++..+.. ..+++..+..... ....+..
T Consensus 164 -------g~l~~~~gw~~~F~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~~~~~~~- 235 (489)
T PRK10207 164 -------PVIADKFGYSVTYNLCGAGLIIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCAWLMHNV- 235 (489)
T ss_pred -------HHHHHhhChHHHHHHHHHHHHHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHhhh-
Confidence 2223566899999987553333333332332211100 0001101111100 0000000
Q ss_pred cchHHHHHHH-------HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-c-----CC
Q psy7924 225 DIDSEITDMQ-------NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-A-----GS 291 (481)
Q Consensus 225 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----g~ 291 (481)
. ........ .-..++++. .+.+|++.+.... ........+..+.......+.+.++ . |+
T Consensus 236 ~-~~~~~~~~~~~i~~~~f~~~~~~~----~~~~r~r~~~~~~---l~~~~~~f~~~~~q~~~~l~l~~~~~~~~~~~G~ 307 (489)
T PRK10207 236 E-VANLVLIVLSIVVTIIFFREAFKL----DKTGRNKMFVAFV---LMLEAVVFYILYAQMPTSLNFFAINNVHHEILGF 307 (489)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHhcC----CHHHHHHHHHHHH---HHHHHHHHHHHHHHcccHHHHHHHHhccccccce
Confidence 0 00000000 000001111 1233332111111 1111111111122222233333331 1 22
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHhCChH-------HHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHH
Q psy7924 292 SLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRI-------LLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSL 364 (481)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 364 (481)
............+..++.+++.+++.||+++|+ -+..+.++.+++.+.+........... ...+.++.+...
T Consensus 308 ~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~-~~~s~~~~i~~~ 386 (489)
T PRK10207 308 SINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQ-GLTSPWFIVLVY 386 (489)
T ss_pred EECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CccCHHHHHHHH
Confidence 223344445555666677888899999999886 366677777766654432111111110 012334455555
Q ss_pred HHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH----------hhcCChhHHHHHHHH
Q psy7924 365 CVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL----------LLGGHGAFWIFSVIA 434 (481)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~----------~~g~~~~~~~~~~~~ 434 (481)
.+.+.+...... ....++.+..|++.++.++|+.+....+|+.++..+...... ...+.+.|...++.+
T Consensus 387 ~l~g~Ge~~~~~-~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 465 (489)
T PRK10207 387 LFQSLGELFISA-LGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVT 465 (489)
T ss_pred HHHHHHHHHHhH-HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHH
Confidence 566666555444 434777788999999999999999999999998877654321 111344566666666
Q ss_pred HHHHHHHHHh
Q psy7924 435 ALGAVFTYIL 444 (481)
Q Consensus 435 ~~~~~~~~~~ 444 (481)
++++++.+..
T Consensus 466 ~~~~v~~~~~ 475 (489)
T PRK10207 466 LGVAVVMALM 475 (489)
T ss_pred HHHHHHHHHH
Confidence 6666655444
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-21 Score=164.43 Aligned_cols=353 Identities=18% Similarity=0.116 Sum_probs=236.4
Q ss_pred ccccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHH---HHH
Q psy7924 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSF---IGS 78 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~---~~~ 78 (481)
|+.-....+.+|.+++ .++++..|.+++...++.|+.+.+++.|++.+|+|+|+.++.++.++++++.+.. -..
T Consensus 26 G~~~~l~diLip~l~~---~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~ 102 (422)
T COG0738 26 GFITCLNDILIPHLKE---VFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSK 102 (422)
T ss_pred HHHhhcchhhHHHHHH---HhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 5556677889999999 9999999999999999999999999999999999999999999999999999985 334
Q ss_pred HhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhh
Q psy7924 79 SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAIL 151 (481)
Q Consensus 79 ~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 151 (481)
++. .+ +++-++. |.|.+...+.... ++....-+...+... .+|..
T Consensus 103 ~y~--~F----L~~lFil--a~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn--------------------~lGa~ 154 (422)
T COG0738 103 SYG--FF----LVALFIL--ASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFN--------------------GLGAI 154 (422)
T ss_pred hHH--HH----HHHHHHH--HhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhh--------------------hhHHH
Confidence 455 77 7777888 7777666555544 334555666777777 88888
Q ss_pred hhhhhhhhhhhhhHh----------hccchhhHHHHHHHHhhHHHHHHHHHHhc--cCCChhHHhhcCcHHHHHHHHHHH
Q psy7924 152 CPISISQSRRLAQVI----------KERKFEASVYGLSIICALLPIFFVGLMLL--MPESPQFHLKKNRVKQAKESLQWF 219 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~----------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~~ 219 (481)
+++.++......... ........||+++...+...+++.+.... .||.+.-
T Consensus 155 ~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~~----------------- 217 (422)
T COG0738 155 LGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQVA----------------- 217 (422)
T ss_pred HHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCcc-----------------
Confidence 888877443331100 01112345888888887777666665553 4543200
Q ss_pred hCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhH
Q psy7924 220 RGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNL 297 (481)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~ 297 (481)
+.++.+.++....+.+++|+.+.-. +..++.... -.....+.+.+..+ .|.+. +...
T Consensus 218 ----------------~~~~~~~~~~~~~~l~~~~~~~~gv-l~~FlYVG~----Eva~gsfl~~y~~~~~g~~~~~aa~ 276 (422)
T COG0738 218 ----------------APSLGASGSAGLSSLFQNKHLRLGV-LAIFLYVGA----EVAIGSFLVSYLEELLGLNEQQAAY 276 (422)
T ss_pred ----------------cccccccccchHHHHHhChHHHHHH-HHHHHHHhH----HHHHHHHHHHHHHhcCCccHHHHHH
Confidence 0000111111467788887544322 223233322 23333444444444 77776 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCc
Q psy7924 298 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGP 377 (481)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
..+....+.++|++++.++..|+...|.+.+..+...+.++...+. +. ...+....+.+.+.+..+ |
T Consensus 277 ~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~-----------~g-~v~~~~l~~ig~F~simf-P 343 (422)
T COG0738 277 YLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI-----------GG-VVALYALFLIGLFNSIMF-P 343 (422)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh-----------cC-hHHHHHHHHHHHHhHHHH-H
Confidence 7888888899999999999999999988887776666655555442 12 333444444555555545 4
Q ss_pred hhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy7924 378 IPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438 (481)
Q Consensus 378 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 438 (481)
..++...+..|. +-. ..|......-+|+++.|++.|++.|+.|....+......|.+..
T Consensus 344 TIfslal~~l~~-~ts-~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 344 TIFSLALKNLGE-HTS-VGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHHHhccCc-ccc-ccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 445777788883 333 33444456668999999999999999988777665555555444
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-21 Score=179.01 Aligned_cols=352 Identities=13% Similarity=-0.003 Sum_probs=198.5
Q ss_pred ccccccccccccccccCCCCcccCchhhHHH--HHHHHHHHhhhhhhh-hhhhccccchhhhhhhhhhHHH-HhHHHH--
Q psy7924 2 GTILGWTSPAGDRLIAGEYPFLVTESDLSFI--GSSMALGAVFGSPVV-GNLVDTVGRKNTMLLLAVPTVT-ESDLSF-- 75 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~~~~~~~~~~~~-g~l~d~~Grr~~~~~~~~~~~~-~~~~~~-- 75 (481)
|+-++...|.+|.+.+ |.|.|.+++|++ .+...+...+.+|+. ++.+||+||||..++...+... .....+
T Consensus 14 g~~~~~~~p~lp~~l~---~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~~~ 90 (390)
T TIGR02718 14 GIPIGLAMDALPTLLR---EDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLALV 90 (390)
T ss_pred HhHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHHcC
Confidence 4556777899999999 999999999997 466677887888888 5579999999987555433211 111111
Q ss_pred -HHHH-hHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccc
Q psy7924 76 -IGSS-MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSD 146 (481)
Q Consensus 76 -~~~~-~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (481)
...+ .. .+ +..-+.. .+..+...+..-. .++++...+....+.
T Consensus 91 ~~~~~~~~--~~----~~~~~~~--~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~-------------------- 142 (390)
T TIGR02718 91 GPDVAGAG--WA----VGLLACA--SLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGV-------------------- 142 (390)
T ss_pred CcchhhHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHH--------------------
Confidence 1212 11 22 2212222 2222222211111 233344444455555
Q ss_pred cchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccc
Q psy7924 147 HLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDI 226 (481)
Q Consensus 147 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~ 226 (481)
.+|..++.... ....+..+||..|++.++..++..+..++++|+++. +.+
T Consensus 143 ~lG~~~g~~~~---------~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~---~~~------------------ 192 (390)
T TIGR02718 143 MIGFFGGGAGT---------LVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA---SPE------------------ 192 (390)
T ss_pred HHHHHHHHHHH---------HHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC---ccc------------------
Confidence 66666666443 122256799999999998887766665555443210 000
Q ss_pred hHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHH-H
Q psy7924 227 DSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVG-T 304 (481)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~-~ 304 (481)
+++++..+.++.+|+|..+......+ +... ....... +.+.+.++.|++. +.+....... .
T Consensus 193 ------------~~~~~~~~~~~~l~~~~~~~~~~~~~-l~~~---~~~~~~~-~~~~~l~~~G~s~~~ig~~~~~~~~~ 255 (390)
T TIGR02718 193 ------------APLARRASLFRFFRRPLAWSLLALAL-LSAM---TAVSGFG-LSKLYLVDAGWPLEWIGRLGMAGGAV 255 (390)
T ss_pred ------------cchhhHHHHHHHHcCcCHHHHHHHHH-HHHH---HHHHHHH-HhhHHHHhcCCCHHHHHHHHhHHHHH
Confidence 00001124567777765333222222 2211 1112222 3344445578876 4455555554 4
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhc
Q psy7924 305 IMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVG 384 (481)
Q Consensus 305 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (481)
..+++.++.|++.||+|+|+.+..+..+..+..+...... .... ............+.++..+....... ....
T Consensus 256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~ 329 (390)
T TIGR02718 256 TVLLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQA-AFWL----APGIAVAWSCSAFGSLITGITSVAIY-TAFM 329 (390)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-Hccc----CCcHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5567789999999999999988877665533322221110 0000 01111112222222222333333333 4444
Q ss_pred ccCcc-cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 385 EIFPS-QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 385 e~~p~-~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
+..++ +.+++..++.+...++|..++|.+.|.+.|..|++..|...+++.++.
T Consensus 330 ~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a 383 (390)
T TIGR02718 330 RFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLA 383 (390)
T ss_pred HHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 55554 889999999999999999999999999999999887777666555444
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-21 Score=164.76 Aligned_cols=336 Identities=15% Similarity=0.099 Sum_probs=198.5
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhcccccccee
Q psy7924 25 TESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTM 104 (481)
Q Consensus 25 ~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~~~~~ 104 (481)
+..-.|.+.|.+.+...+.++.+|.++||+|||++++++.+..++..++.+.+.|+. .+ +..|++. |+..|.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S~~F~--af----v~aR~l~--Gi~kgn 137 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALSRNFA--AF----VLARFLG--GIFKGN 137 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHHHHHH--HH----HHHHHhh--hhccCc
Confidence 444579999999999999999999999999999999999999999999999999997 88 8889999 999987
Q ss_pred eeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHH
Q psy7924 105 LLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGL 178 (481)
Q Consensus 105 ~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~ 178 (481)
..+.... ++.|++.++...... .+|.++++.++...... . ........-.+
T Consensus 138 l~v~rAiisdV~sek~r~l~ms~v~~a~--------------------~lGfilGPmIGgyla~f--~-~~~g~~p~alP 194 (451)
T KOG2615|consen 138 LSVIRAIISDVVSEKYRPLGMSLVGTAF--------------------GLGFILGPMIGGYLAQF--S-SISGSYPFALP 194 (451)
T ss_pred hHHHHHHHHhhcChhhccceeeeeehhh--------------------hcchhhcchhhhHHHhh--H-hhhccCchHHH
Confidence 7655444 889999999999998 88888888888322110 0 00011111122
Q ss_pred HHHhhHHHHH-HHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchh
Q psy7924 179 SIICALLPIF-FVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAK 257 (481)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (481)
-++..+.+.. .....+++||+-.. +++.++..+ ..+..+ ++.+..+.++..-....|+++..
T Consensus 195 ~~~v~i~a~~~v~~~~~~lpETL~~---rk~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~v~~lrn~p~~ 257 (451)
T KOG2615|consen 195 CLLVFILAAGDVTFFPWFLPETLPL---RKRNDEHST-----------LQEAAD---DRLALLKFARIFKVAALRNPPLL 257 (451)
T ss_pred HHHHHHHHHHHHHHHHHhCCccccc---hhhcccccc-----------hhhhhh---hhhhhcchhhhhhhhhhcCcccc
Confidence 2233333333 44455678998321 111111100 000000 00000000000111233444333
Q ss_pred hhH--HHHHHHHHHHHhhhhhhhhHhhHHH-hhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhC--ChHHHHHHHH
Q psy7924 258 RGL--LIGLGVMFIQQFGGINAVVFYTVKI-FKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLG--RRILLLVSAV 331 (481)
Q Consensus 258 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~~~~ 331 (481)
..+ +..+.+..+.....+....++.+.+ .+.+|+++ +++.+....++.+.+......+..||.+ .+-.+..+..
T Consensus 258 ~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tGl~m~~~ql~~~~~l~~~~~~~~a~l~~~l~ 337 (451)
T KOG2615|consen 258 DFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTGLLMLVIQLALVPILPRYKGNIKAVLLFSLL 337 (451)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhhHHHHHHHHhccccccccccchhhHHHHHHH
Confidence 311 1111111111111112222233333 24467776 6666666666666666666666666655 3444444444
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHH
Q psy7924 332 IMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVT 411 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~ 411 (481)
++.-..+.+.. ............+..+........+ ..++....|.++||+..|+....+.++-+++|
T Consensus 338 ~~vP~~llls~-----------~~~~~~l~~~s~l~sf~~A~~vt~L-t~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGP 405 (451)
T KOG2615|consen 338 LIVPAFLLLSL-----------ARTPVVLYLGSTLKSFSTASVVTCL-TSLVHKYGPQSQRGTLNGIFRSLGALARAIGP 405 (451)
T ss_pred HHHHHHHHHhc-----------cccchhhhHHHHHHHHHHHHhhHHH-HHHHHhcCCcccchHHHHHHHHHHHHHHHhhh
Confidence 44443333322 1222333444444444444444334 47788899999999999999999999999999
Q ss_pred hHHHHHHHh
Q psy7924 412 KFFGDVTLL 420 (481)
Q Consensus 412 ~~~~~~~~~ 420 (481)
.+.|.+...
T Consensus 406 lv~g~i~~W 414 (451)
T KOG2615|consen 406 LVSGVIFSW 414 (451)
T ss_pred hhhheeEEE
Confidence 998866543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=182.11 Aligned_cols=379 Identities=13% Similarity=0.081 Sum_probs=232.5
Q ss_pred cccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHH------HHhHHhH
Q psy7924 11 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIG------SSMALGA 84 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~~~ 84 (481)
..|.+++ ++|+|++|.+++.++. .....++++.|+++||+|||+++.++.+++.++.++++++ ++++ .
T Consensus 49 ~s~~L~~---~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~--~ 122 (591)
T PTZ00207 49 ISGAMQA---RYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVV--R 122 (591)
T ss_pred HHHHHHH---HhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHH--H
Confidence 4466777 9999999999998874 4455678889999999999999999999999999999997 5677 8
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
+ .+.|++. |++.+...+.... +++||.+.++...+. .+|..+...+..
T Consensus 123 l----~l~r~l~--G~G~~~~~~~~~~~i~~~Fp~~RG~a~Gi~~~~~--------------------gLGsaI~~~l~~ 176 (591)
T PTZ00207 123 L----SVYNGLM--TLGCMLFDLGAVVTVLSVFPSNRGAVVAIMKTFT--------------------GLGSAILGSIQL 176 (591)
T ss_pred H----HHHHHHH--HHHHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH--------------------HHHHHHHHHHHH
Confidence 8 9999999 9887765444333 889999999999998 888875443331
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh-c--cCCChhHHhhcCcHHHHHHHHHHHhCCCc-----------
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML-L--MPESPQFHLKKNRVKQAKESLQWFRGSEY----------- 224 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~--~~esp~~l~~~~~~~~a~~~~~~~~~~~~----------- 224 (481)
.. ...+|+..|++.+++.++..++.. + .|++|+|..++++.++.++..++.++..+
T Consensus 177 ~l----------~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~p~~~f~ 246 (591)
T PTZ00207 177 AF----------FSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKAPMWRFV 246 (591)
T ss_pred HH----------HHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCCCceehh
Confidence 10 123677777777777766555544 3 46666665444433333333221111000
Q ss_pred -------------------------------------------------------------cchHHHHHH-H---H--hh
Q psy7924 225 -------------------------------------------------------------DIDSEITDM-Q---N--SL 237 (481)
Q Consensus 225 -------------------------------------------------------------~~~~~~~~~-~---~--~~ 237 (481)
+.+.+..+. + + +.
T Consensus 247 ~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (591)
T PTZ00207 247 YGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAGEEVSAA 326 (591)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccccccccc
Confidence 000000000 0 0 00
Q ss_pred hh-------h---ccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhc-CCCCch--hH-HHHHHH
Q psy7924 238 EK-------E---RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDA-GSSLNP--NL-CTIIVG 303 (481)
Q Consensus 238 ~~-------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~--~~-~~~~~~ 303 (481)
+. + .+...++++.+++. .+|+.+...+ +....-........++.+.. |.+.+. .. ...+.+
T Consensus 327 ~~~~~~~~~~~~~P~~~~t~~q~l~~~----d~Wll~~~~~-cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~~vsL~s 401 (591)
T PTZ00207 327 EDKVVETDVDYIAPQFQETFIEGLKTA----RLWCLLWSIF-CCVGAHFVIIFNARFIYTALAGEAPDDALNTLLTVLNG 401 (591)
T ss_pred ccccccccccCCCCCCcchHHHHHhch----hHHHHHHHHH-HhhCchheeeecHHHHHHHhcCCCCCccceeeehhhhh
Confidence 00 0 00001333444332 2333333333 33333344445566777777 663333 33 678889
Q ss_pred HHHHHHHHHHHHHHHHhCCh--------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhcc
Q psy7924 304 TIMMVTTWIATMIVDRLGRR--------ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375 (481)
Q Consensus 304 ~~~~~~~~~~g~l~d~~grr--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
+.+.+|++..|.++....+| +..+....++.++.+++... .....+.+..++.+++.+..+
T Consensus 402 i~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~~~~~~lll~~~-----------~p~~~L~~~~~lvg~~~G~~~ 470 (591)
T PTZ00207 402 VGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSVCIITMLTLFLT-----------LPKAALPLPYFIAAFANGFMA 470 (591)
T ss_pred HHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHHH-----------CCccHhHHHHHHHHHHhhHhH
Confidence 99999999999887332222 22222222244444444332 111345566667777777766
Q ss_pred CchhhhhhcccCcccchhhHHHHHHHHHHHHHHHH-HhHHHHHHHhhc-------------CChhHHHHHHHHHHHHHHH
Q psy7924 376 GPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVV-TKFFGDVTLLLG-------------GHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 376 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~-~~~~~~~~~~~g-------------~~~~~~~~~~~~~~~~~~~ 441 (481)
.... ..++|+|. ++-|+-..+.....-+|+.+. -.+.|.++|... ++.+|.+.+++++++.++.
T Consensus 471 ~~~~-~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~~~~~~g~~~s 548 (591)
T PTZ00207 471 ATIA-LVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLLGLSFLAFITS 548 (591)
T ss_pred HHHH-HHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHHHHHHHHHHHH
Confidence 5554 78899999 777887777777777777776 456677776532 3567888888888888776
Q ss_pred HHhccCCC
Q psy7924 442 YILVPETK 449 (481)
Q Consensus 442 ~~~~~~~~ 449 (481)
..+.-+++
T Consensus 549 ~~l~~R~r 556 (591)
T PTZ00207 549 TYVHLQYR 556 (591)
T ss_pred hheeeehH
Confidence 55544444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-20 Score=175.00 Aligned_cols=391 Identities=11% Similarity=-0.019 Sum_probs=226.4
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFG 87 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g 87 (481)
.+.+|.+..++.++|++..+.+++.+.+.++..++++++|+++|| +|||+++.++.++.+++.++.+++++.+ .+
T Consensus 30 ~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~--~~-- 105 (475)
T TIGR00924 30 QGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPD--LI-- 105 (475)
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhcccHh--HH--
Confidence 455665544211289999999999999999999999999999999 8999999999999999999999988877 77
Q ss_pred hhHHHHhhccccccceeeeeeccc-------c---ccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 88 SPVVGNLVDTVGRKNTMLLLAVPS-------F---DIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 88 ~~~~~r~~~~~G~~~~~~~~~~~~-------~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+++|++. |++.|...+.... + ++|+...++...+. ++|..+++.+.
T Consensus 106 --~~~~~l~--g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~--------------------niG~~ig~~l~ 161 (475)
T TIGR00924 106 --FYGLGTI--AVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSI--------------------NIGSFISPLLA 161 (475)
T ss_pred --HHHHHHH--HhccccccCCHHHHHHHhcCCCCcccccceehhHHHHH--------------------HHHHHHHHHHH
Confidence 8899999 9888876655543 2 24777888888888 88888888777
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhcc----CCChhHHhhcCcHHH--HHHHHH-------------H
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLM----PESPQFHLKKNRVKQ--AKESLQ-------------W 218 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~----~esp~~l~~~~~~~~--a~~~~~-------------~ 218 (481)
+...+..+||+.|.+.++..++..+...+. ++.|+.. ++.+.++ ..+... .
T Consensus 162 ---------g~l~~~~g~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (475)
T TIGR00924 162 ---------GVIAENYGYHVGFNLAAVGMVIGLLTFFAGRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALVFFCAW 231 (475)
T ss_pred ---------HHHHHhcChHHHHHHHHHHHHHHHHHHHHcccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 222245689999998876554443333322 2222100 0000010 000000 0
Q ss_pred HhCCCccchHHHHH------HHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCC
Q psy7924 219 FRGSEYDIDSEITD------MQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGS 291 (481)
Q Consensus 219 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~ 291 (481)
....+.. ...... .........+++ ..+.-|++ . ... +.+.+.....+..+.......+... ++.+.
T Consensus 232 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~-~~~-l~l~~~~~~~~~~~~Q~~s~l~l~~~~~~~~ 305 (475)
T TIGR00924 232 LMHHVVI-ANILLMTVTLAVIIFFFRLAFKPR--LDAVARNK-M-YAY-IVLFLEAVVFWVLYAQMPTSLNFFADNNMHH 305 (475)
T ss_pred HHhccHH-HHHHHHHHHHHHHHHHHHHHHhcc--CCHHHHhH-H-HHH-HHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence 0000000 000000 000000000000 00111111 0 111 1122222221222222222223222 22222
Q ss_pred C-----CchhHHHHHHHHHHHHHHHHHHHHHHHhCC-----hHHH--HHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy7924 292 S-----LNPNLCTIIVGTIMMVTTWIATMIVDRLGR-----RILL--LVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359 (481)
Q Consensus 292 ~-----~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-----r~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (481)
+ ...+....+..+..++..++..++..|.+| +... ..+.++.+++.....+.....++.. ..+.++
T Consensus 306 ~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~--~~s~~~ 383 (475)
T TIGR00924 306 EMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADAGG--LTSPWF 383 (475)
T ss_pred cccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--ccCHHH
Confidence 2 124456666666666665554443333333 3333 5677777777766654322111111 234455
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHH
Q psy7924 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV 439 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 439 (481)
.+....+.+.+.... .|....+..+..|++.||+.+|+......+|..+++.+.....+..++...+...+.++++..+
T Consensus 384 ~i~~~~~~~~ge~~~-~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 462 (475)
T TIGR00924 384 MVLIYLFQTLGELMI-SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLVGV 462 (475)
T ss_pred HHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHH
Confidence 555666666655444 4555688899999999999999999999999999988887776666777777777777777766
Q ss_pred HHHHhcc
Q psy7924 440 FTYILVP 446 (481)
Q Consensus 440 ~~~~~~~ 446 (481)
+.++..|
T Consensus 463 ~~~~~~~ 469 (475)
T TIGR00924 463 VMALMVP 469 (475)
T ss_pred HHHHHHH
Confidence 6655443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=168.73 Aligned_cols=362 Identities=15% Similarity=0.119 Sum_probs=215.4
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcccc-chhhhhhhhhhHHHHhHHHHHHHHhHHh
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-RKNTMLLLAVPTVTESDLSFIGSSMALG 83 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (481)
+|...|.+|...+ +.|.|..|+|.+.++..+...++++++|.++||++ +|+.+.+..++.++........++++
T Consensus 18 ~G~~~p~~~~~L~---~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~-- 92 (400)
T PF03825_consen 18 YGAFLPYLPLYLE---SRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAFSSSFW-- 92 (400)
T ss_pred HHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHhccHH--
Confidence 4556677788888 88999999999999999999999999999999986 57777777777777666666777777
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQ 158 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ 158 (481)
.+ +..-++. .+......+..-+ .++++.-.+-...+- ++|-.++.....
T Consensus 93 ~~----~~~~~l~--~~~~~p~~pl~dsi~~~~~~~~~~~YG~iRlwG--------------------SiGf~~~~~~~~ 146 (400)
T PF03825_consen 93 WL----FVIMLLF--SFFFSPTMPLSDSIALSYLGDRGKDYGRIRLWG--------------------SIGFIVAALAFG 146 (400)
T ss_pred HH----HHHHHHH--HHHHccHHHHHHHHHHHHcccccCCCCcchhhh--------------------hHHHHHHHHHHH
Confidence 66 4433333 3322222221111 111222222222222 444444422210
Q ss_pred hhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhh
Q psy7924 159 SRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE 238 (481)
Q Consensus 159 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (481)
. .........+....+++.+...++.....+.+|+.|.- ++.+ .+
T Consensus 147 ~-----~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~lp~~~~~----~~~~--------------------------~~ 191 (400)
T PF03825_consen 147 G-----LLGGYLGISGTSLIFYIAAILSLLLAGFALFLPKTPPK----RSAK--------------------------ES 191 (400)
T ss_pred H-----HHHhhhccccccHHHHHHHHHHHHHHHHHHhCCCCccc----cccC--------------------------CC
Confidence 0 00101111222334555555555555555567877610 0000 00
Q ss_pred hhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcC-CCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy7924 239 KERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAG-SSL-NPNLCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~g~l 316 (481)
.++....+..+++|+|+...-++..+.... .......+.+.+.++.| .+. ..+....+..+.+++.-...+++
T Consensus 192 ~~~~~~~~~~~llk~~~~~~Fll~~~l~~~-----~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~~f~~~~~~ 266 (400)
T PF03825_consen 192 VKKLLGLDALKLLKNPRFLVFLLAAFLIGI-----SHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIPFFFFSGRF 266 (400)
T ss_pred cccccchHHHHHhcCccHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011112234578888754432222222221 12344445555566666 554 44556667778899999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHH----HHHHHHHhhccCchhhhhhcccCcccch
Q psy7924 317 VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSL----CVFIIVFSLGFGPIPWMLVGEIFPSQIK 392 (481)
Q Consensus 317 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~e~~p~~~r 392 (481)
..|+|.|+++.++.+..++=..++... .++.+...... .+.+..++...... ..++.+..|++.|
T Consensus 267 ~~r~g~~~ll~~a~~~~~vR~~l~a~~----------~~~~~~~~~~~~l~q~lhG~tf~~~~~a~-~~yi~~~~p~~~~ 335 (400)
T PF03825_consen 267 LKRFGIKWLLLLALVAYAVRWLLYAYF----------SDPWPFIVALQLLGQLLHGLTFGLFHAAS-VRYIDRIAPPELR 335 (400)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHHHHHh----------cCCcHHHHHHHHHHHhhhhHHHHHHHHHH-HHHHHHhCCccch
Confidence 999999999999999888887776652 12222222222 23555555544444 3889999999999
Q ss_pred hhHHHHHHHH-HHHHHHHHHhHHHHHHHhhcCChhH------HHHHHHHHHHHHHHHHhccCC
Q psy7924 393 GIAVSIACLF-NWVSVLVVTKFFGDVTLLLGGHGAF------WIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 393 ~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~ 448 (481)
+++.++.+.. ..+|..++..+.|++.|..|.+..+ .+.+++.++..++..++.||+
T Consensus 336 at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~ 398 (400)
T PF03825_consen 336 ATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPK 398 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 9999998876 5689999999999999998866433 334444444444444444443
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=9e-22 Score=168.39 Aligned_cols=340 Identities=14% Similarity=0.048 Sum_probs=235.7
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~ 100 (481)
+.+-+++++|++.++..+...+..++.|.+.||+|+|-.+++|+.+...++++.++..+++ .+ ++.|.+| |+
T Consensus 100 ~~~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~--~l----~vAR~LQ--gv 171 (464)
T KOG3764|consen 100 SLDRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFGNSYP--ML----FVARSLQ--GV 171 (464)
T ss_pred CccccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHcchhH--HH----HHHHHHh--hh
Confidence 5677889999999999999999999999999999999999999999999999999999999 99 9999999 99
Q ss_pred cceeeeeeccc--------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchh
Q psy7924 101 KNTMLLLAVPS--------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFE 172 (481)
Q Consensus 101 ~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 172 (481)
|.+...++... ..+|+.+++..-.+. .+|.++++..+ +...+.
T Consensus 172 gsA~~~tsglamlAd~f~~d~er~~vmGialgfi--------------------slG~lvgPpfG---------GilYe~ 222 (464)
T KOG3764|consen 172 GSAFADTSGLAMLADVFPEDNERGSVMGIALGFI--------------------SLGVLVGPPFG---------GILYEF 222 (464)
T ss_pred hHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHH--------------------hccceecCCcc---------cchHhh
Confidence 99877776665 667899999998888 99999999888 444577
Q ss_pred hHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhc
Q psy7924 173 ASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFS 252 (481)
Q Consensus 173 ~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
.|.+..|++.+++.++-..+.+++-|..+ ..+++..+..+++++++
T Consensus 223 ~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~----------------------------------~~~~~~~~~~~~~~Ll~ 268 (464)
T KOG3764|consen 223 AGKSAPFLVLAIVLLLDGALQLLVIEPTE----------------------------------MDPDSTEQGTPMWSLLM 268 (464)
T ss_pred cCCcCcHHHHHHHHHHHHHHHHheeCccc----------------------------------cCccccccCccHHHHHh
Confidence 89999999999999998888876433210 00112334557888888
Q ss_pred CcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH--HH
Q psy7924 253 TPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLL--VS 329 (481)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~--~~ 329 (481)
+|..+...... . ..+...-..-..+.....++...+. +.+.......+...++..+.|.+.||++.-+.+. .+
T Consensus 269 dP~I~~~agai---~-~~n~~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~~lfg~la~k~~~~~wl~~~~g 344 (464)
T KOG3764|consen 269 DPYILLIAGAI---T-FSNSSLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGTNLFGKLADKYPHLRWLLSLGG 344 (464)
T ss_pred CchHhhhhcch---h-hccchHHHhCcccHHHHHHhccCCCcceeeeecccccchhccCchHHHHHHhcCchhHHHHHHH
Confidence 87433222111 1 1111111111223333455555444 5567777888889999999999999999433333 33
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc---chhhHHHHHHHHHHHH
Q psy7924 330 AVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ---IKGIAVSIACLFNWVS 406 (481)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~g 406 (481)
.+...++.....+.- . -...+......++.+........|.. .+..|.-..+ .-|...++......++
T Consensus 345 l~~~G~~~~~iP~~~---~-----~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~rh~s~~~vYGsVyaIad~a~sla 415 (464)
T KOG3764|consen 345 LATVGVSSGPIPFAT---S-----IAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPRHVSGFNVYGSVYAIADAAFSLA 415 (464)
T ss_pred HHHHHHHhchhHhhh---h-----HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchhhccccceeeeHHHHHHHHHHHh
Confidence 333333322222210 0 00111222222222222222333333 2333333333 5578889999999999
Q ss_pred HHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 407 VLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
.+++|.+.|.+.+..|+.|...+.+....+-+-++.++
T Consensus 416 ~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapvl~ll 453 (464)
T KOG3764|consen 416 YAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPVLLLL 453 (464)
T ss_pred hhccccccchheeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998888888887776655443
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-20 Score=174.81 Aligned_cols=338 Identities=15% Similarity=0.125 Sum_probs=216.8
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH-----HhHHhHhhhhhHHHHhh
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS-----SMALGAVFGSPVVGNLV 95 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~g~~~~~r~~ 95 (481)
++.-|+...+++..+..+...+.+++.|.++||+.||++++.+-++.++..+..++.. +.+ .+ ++.-++
T Consensus 39 ~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~--~L----l~~~fl 112 (524)
T PF05977_consen 39 QLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPW--LL----LILTFL 112 (524)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHH--HH----HHHHHH
Confidence 5566788999999999999999999999999999999999999888776655544332 334 66 777788
Q ss_pred ccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhc
Q psy7924 96 DTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKE 168 (481)
Q Consensus 96 ~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 168 (481)
. |++.+...+.... +++...+.++.+... ++...+++.++ +.
T Consensus 113 ~--g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~--------------------niar~iGPalg---------G~ 161 (524)
T PF05977_consen 113 L--GIGSAFFNPAWQAIIPELVPKEDLPAANALNSISF--------------------NIARIIGPALG---------GI 161 (524)
T ss_pred H--HHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH--------------------HHHHhccchHH---------HH
Confidence 8 8887776655554 445556666666666 44444444444 11
Q ss_pred cchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchH
Q psy7924 169 RKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLM 248 (481)
Q Consensus 169 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (481)
.....|-.+.|.+.++.-++........+..++ +++. ..++. .+.-+..++
T Consensus 162 Lva~~G~~~~f~inalsfl~~i~~l~~~~~~~~----~~~~-~~e~~------------------------~~~l~~G~r 212 (524)
T PF05977_consen 162 LVAFFGAAAAFLINALSFLISILALLRWKPPPP----PSSL-PRERF------------------------FSALREGLR 212 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc----cccc-chhhh------------------------hhhHHHHHH
Confidence 114456667777777655554443333332210 0000 00000 000011222
Q ss_pred HHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHH
Q psy7924 249 QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILL 326 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~ 326 (481)
-..++|..+. .+....+.. .. ........|.+.+ ..+.+. ..++.....+++.++|.++.+++.+|+++++.+
T Consensus 213 yv~~~~~l~~-~l~~~~~~~---l~-~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGai~Gal~~~~l~~~~~~~~lv 287 (524)
T PF05977_consen 213 YVRSSPPLRS-VLLRSFLFN---LF-ASAVWALLPLFARDVLGGGASGYGLLLAAFGVGAILGALLLPRLRRRLSSRRLV 287 (524)
T ss_pred HHhcchHHHH-HHHHHHHHH---Hh-hhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccCcchhh
Confidence 2333432222 222111111 11 1222234555544 466665 457788889999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHH
Q psy7924 327 LVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVS 406 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g 406 (481)
..+.+..+++.+.+++ ..+.+.....+.+.+.+........ .+...+..|++.||++.++..+....+
T Consensus 288 ~~~~~~~a~~~~~lal-----------~~~~~~~~~~l~l~G~~~~~~~~~~-~t~~Q~~~P~~~~GRv~si~~~~~~g~ 355 (524)
T PF05977_consen 288 LLASLLFALALLLLAL-----------SPSFWLALIALFLAGAAWIIANSSL-NTLVQLSVPDWVRGRVFSIYQMVFFGG 355 (524)
T ss_pred HHHHHHHHHHHHHHhc-----------chHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCCHHHHhHHHHHHHHHHHHH
Confidence 8888888877777666 3344445555555555544433333 477789999999999999999999999
Q ss_pred HHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy7924 407 VLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
..++..+.|.+.+..|.+..+.+.++..++..++.
T Consensus 356 ~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 356 MPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877766655544444443
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.7e-21 Score=183.93 Aligned_cols=292 Identities=14% Similarity=0.103 Sum_probs=187.2
Q ss_pred ccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH-----
Q psy7924 4 ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS----- 78 (481)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----- 78 (481)
..++.++.++.+.+ +++++.++.|++.+.+.++++++.++.++++||+|||+.+.++.++++++++++++.+
T Consensus 48 ~~g~~~~~l~~iek---~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~ 124 (633)
T TIGR00805 48 YNGLVNSSLTTIER---RFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGR 124 (633)
T ss_pred HHHHHHhhchhhhh---hhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHHhcCC
Confidence 35788899999999 9999999999999999999999999999999999999999999999999999998764
Q ss_pred --------------------------------------------HhHHhHhhhhhHHHHhhccccccceeeeeeccc---
Q psy7924 79 --------------------------------------------SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS--- 111 (481)
Q Consensus 79 --------------------------------------------~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~--- 111 (481)
+..+..+ +++|+++ |++.+...+....
T Consensus 125 y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~l~--GiG~~~~~~~~~~~i~ 198 (633)
T TIGR00805 125 YSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLF----LVSQLLR--GIGATPIFPLGISYID 198 (633)
T ss_pred ccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhh----HHHHHHH--hccCCcchhcCchhhh
Confidence 1111245 8999999 9999888777766
Q ss_pred ----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhc------------c--chhh
Q psy7924 112 ----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKE------------R--KFEA 173 (481)
Q Consensus 112 ----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~------------~--~~~~ 173 (481)
+++|++..++...+. .+|..+++.++...... ..+. . ....
T Consensus 199 d~~~~~~~~~~~~i~~~~~--------------------~iG~~lG~llgg~l~~~-~~d~~~~~~~~~~l~~~dprWiG 257 (633)
T TIGR00805 199 DFAKSKNSPLYIGILESIA--------------------VFGPAFGYLLGSFCLQI-YVDTGSVNTEDVILTPTDPRWIG 257 (633)
T ss_pred ccCCccccHHHHHHHHHHH--------------------HhhhHHHHHHHHHHHhc-ccccccCCCCCCCCCCCCccHHH
Confidence 778899999998888 88888888776322110 0000 0 0012
Q ss_pred HHHHHHHHhhHHHHHHHHHHhccCCC-hhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhc
Q psy7924 174 SVYGLSIICALLPIFFVGLMLLMPES-PQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFS 252 (481)
Q Consensus 174 ~w~~~~~~~~~~~~~~~~~~~~~~es-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (481)
.||..|++.+++.++..+..+++|+. |+... +.+.++.++. ...... ++.. .+..+..++.....+++++
T Consensus 258 aWwl~Fli~g~l~~l~~v~l~~~p~~lp~~~~-~~~~~~~~~~--~~~~~~---~~~~---~~~~~~~~~~~~~~~~Ll~ 328 (633)
T TIGR00805 258 AWWIGFLICGGVALLTSIPFFFFPKALPKEGK-RVNVDVHETE--KLEKSE---DKSR---KKNSDITKDFPKIIKRLLC 328 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccccCCccc-ccchhhhhhh--cccccc---cccc---hhhhhhHHHHHHHHHHHHc
Confidence 48888999888887776666666654 21100 0000000000 000000 0000 0000000111234567888
Q ss_pred CcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHHHHHHH-HHHHHHHHHHHHHHHhCC--hHHHH
Q psy7924 253 TPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCTIIVGT-IMMVTTWIATMIVDRLGR--RILLL 327 (481)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~-~~~~~~~~~g~l~d~~gr--r~~~~ 327 (481)
+|.++...+... .... .+.....+.|.++ +.+|++. +++.......+ +.+++.++.|+++||+++ |+.+.
T Consensus 329 n~~f~~~~l~~~----~~~~-~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~~r~~~~~~~~~~ 403 (633)
T TIGR00805 329 NPIYMLVILAQV----IDSL-AFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIMKKFKLNVKKAAY 403 (633)
T ss_pred CcHHHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhheeeeecccHHHHHH
Confidence 864433322222 2222 2334444555555 4578876 55555555554 568899999999999984 56666
Q ss_pred HHHHHHHHHHHH
Q psy7924 328 VSAVIMALSTLT 339 (481)
Q Consensus 328 ~~~~~~~~~~~~ 339 (481)
.+.+...++.+.
T Consensus 404 ~~~~~~~~~~~~ 415 (633)
T TIGR00805 404 FAICLSTLSYLL 415 (633)
T ss_pred HHHHHHHHHHHH
Confidence 666666655444
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.3e-20 Score=163.79 Aligned_cols=344 Identities=14% Similarity=0.091 Sum_probs=212.4
Q ss_pred cccccccCCCCcccCchh-hHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhh
Q psy7924 11 AGDRLIAGEYPFLVTESD-LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSP 89 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 89 (481)
+.|.+.+ |+|+|++| .|.+.++++.++++++++.|+++||+|.|+++.++.+.+.+.+++.++++++. .+
T Consensus 48 a~p~L~~---elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~--~L---- 118 (511)
T TIGR00806 48 ITPYLLT---VLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLGTSVW--HM---- 118 (511)
T ss_pred HHHHHHH---HcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH--HH----
Confidence 4567777 99999999 99999999999999999999999999999999999999999999999999999 99
Q ss_pred HHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Q psy7924 90 VVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRL 162 (481)
Q Consensus 90 ~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 162 (481)
.+.|++. |++.|... .... +++|+++.++...+. .+|.++++.++..
T Consensus 119 ~i~R~ll--GvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~--------------------~vG~~Ia~~L~ql--- 172 (511)
T TIGR00806 119 QLMEVFY--SVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAV--------------------LLGVFLSSVLGQL--- 172 (511)
T ss_pred HHHHHHH--HHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH---
Confidence 9999999 99998887 3333 889999999999999 9999998888832
Q ss_pred hhHhhccchhhHHHHHH---HHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHH-HHHhh-
Q psy7924 163 AQVIKERKFEASVYGLS---IICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD-MQNSL- 237 (481)
Q Consensus 163 ~~~~~~~~~~~~w~~~~---~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~- 237 (481)
....+||+.. ++......+.++..+++|..++-+.-+++.+..............+...+..+ .+...
T Consensus 173 -------l~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (511)
T TIGR00806 173 -------LVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFNRLEDVRGALPCELDQMVPGPGGKLEDYLGTCRD 245 (511)
T ss_pred -------HHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhccccccccccccccccCCCCCccccchhhhhhhh
Confidence 1234676544 44444445555566678866665544432211000000000000000000000 00000
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC--chhHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL--NPNLCTIIVGTIMMVTTWIATM 315 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~g~ 315 (481)
..-+.-..++++..+++...+ ..++.....+++..+..|...+-++..-+. -.+..-.+..+.+.+.++..|+
T Consensus 246 ~~~~~l~~~~~~~y~n~~vl~-----WSlWwa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tllga~~a~~ag~ 320 (511)
T TIGR00806 246 SFLVRMLSELVTIYRNPQLLL-----WSLWWVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTLLGAITSFIAGF 320 (511)
T ss_pred HHHHHHHHHHHHHhcCcchhh-----hhHHHHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHHHHHHHHHHHHh
Confidence 000001123444556654322 223333444445666667666665542221 2244556666777888888888
Q ss_pred HHHHhCChHHHHHH--HHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchh
Q psy7924 316 IVDRLGRRILLLVS--AVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKG 393 (481)
Q Consensus 316 l~d~~grr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 393 (481)
+-.++.+---+.++ .++.+...+++.. .++.|...+..+++...+........ .-++.....+.-|
T Consensus 321 ~~~~w~~~~~l~l~v~s~~~~gll~~m~~-----------t~~Iw~~Y~~yvlf~~~y~flitia~-~~iA~~L~~~~~a 388 (511)
T TIGR00806 321 VNIRWARWSKLLIAVVSAIQAGLVFWMSQ-----------SHDIWVLYVTYVLFRGIYQFLVPIAT-FQIASSLSKELCA 388 (511)
T ss_pred hcCCchhhHHHHHHHHHHHHHHHhhhhhc-----------ccchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhcccceE
Confidence 85544332222222 2222222222222 45667777777777777766554443 4444555666668
Q ss_pred hHHHHHHHHHHHHHHHHHhH
Q psy7924 394 IAVSIACLFNWVSVLVVTKF 413 (481)
Q Consensus 394 ~~~g~~~~~~~~g~~~~~~~ 413 (481)
...|+.++...+-..+...+
T Consensus 389 LvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 389 LVFGINTFVATALKTIITAV 408 (511)
T ss_pred EEEecHHHHHHHHHHheEEE
Confidence 88888877766655555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-19 Score=160.66 Aligned_cols=361 Identities=14% Similarity=0.140 Sum_probs=201.6
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHH--HHhHHH-HH----HHHh
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTV--TESDLS-FI----GSSM 80 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~--~~~~~~-~~----~~~~ 80 (481)
..|..|...++ +.|+|.+|+|.+.++..+...+.+|+.|.++||+|.||-++....+.. .+.... .+ ..|.
T Consensus 26 ~~pF~~iWL~~--~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~ 103 (412)
T PF01306_consen 26 FLPFFPIWLTQ--VAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNF 103 (412)
T ss_dssp HHHHHHHHHHH--HH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-
T ss_pred HHHHHHHHHcc--ccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444541 379999999999999999999999999999999998776554433221 122111 11 2333
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
+.+.++|++.. |+......+..-+ .++.+.-.+-..++. ++|-.++..
T Consensus 104 ~lg~iig~i~l-------~~~f~~~~~~~Ea~~er~sr~~~feYG~~R~wG--------------------Sig~ai~s~ 156 (412)
T PF01306_consen 104 WLGAIIGGIYL-------GLVFNAGVPLSEAYAERVSRRNGFEYGRARMWG--------------------SIGFAIASL 156 (412)
T ss_dssp HHHHHHTTTTT-------TTTTTTHHHHHHHHHHHHHHHHSS-HHHHHHHH--------------------HHHHHHHHH
T ss_pred HHHHHHHHHHH-------HHHHcccchHHHHHHHHHHHHhcCCcchHHHHh--------------------hHHHHHHHH
Confidence 32233222222 2211111111111 111112222222222 444444444
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (481)
++ +.... .+-+..|++....+++..++... -|+.++....++..
T Consensus 157 ~~---------G~L~~-i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~~~~------------------------- 201 (412)
T PF01306_consen 157 LA---------GILFN-INPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVADAL------------------------- 201 (412)
T ss_dssp HH---------HHHHH-HHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SSTTS-------------------------
T ss_pred Hh---------heeee-eCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhhccc-------------------------
Confidence 44 11112 23456677666665555554443 33332110000000
Q ss_pred HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhc----CCCC-chhHHHHHHHHHHHHH
Q psy7924 235 NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDA----GSSL-NPNLCTIIVGTIMMVT 309 (481)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~-~~~~~~~~~~~~~~~~ 309 (481)
..++++.+.++..+++|+|++|.-.+........ +.......+.+.... +.+. ..+...+...+.+++.
T Consensus 202 -~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~~v~~E~~~ 275 (412)
T PF01306_consen 202 -GAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSVQVFLEALM 275 (412)
T ss_dssp -SS------HHHHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHHHHHHHHHH
Confidence 0000111112345778887655533333332222 222222222222222 1221 1245666677788999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcc
Q psy7924 310 TWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPS 389 (481)
Q Consensus 310 ~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~ 389 (481)
..+.+++.+|+|.|+.++++..++.+=....++ .++++.....-.+-+.-+.....+.. -|+++.+|+
T Consensus 276 m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~-----------~~~~~~i~~~klLH~~e~~l~lva~f-kYI~~~fd~ 343 (412)
T PF01306_consen 276 MFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF-----------ATNPWVISLIKLLHALEFPLLLVAAF-KYITAHFDK 343 (412)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT-------------SHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHS-G
T ss_pred HHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh-----------hcchHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCH
Confidence 999999999999999999999999998888777 34555555555666555555444443 789999999
Q ss_pred cchhhHHHHH-HHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 390 QIKGIAVSIA-CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 390 ~~r~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
+..++...+. +....++..+.+.+.|.+.|+.|++.+|++.+.+.+...++..+.+++.++
T Consensus 344 rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~ 405 (412)
T PF01306_consen 344 RLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKK 405 (412)
T ss_dssp GGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCc
Confidence 9999998885 567889999999999999999999999999998888888888777765444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=163.57 Aligned_cols=328 Identities=12% Similarity=0.092 Sum_probs=188.4
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc----ccch-hhhhhhhhhHHHHhHHHHHHHHhH----HhHhhhhhHH
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRK-NTMLLLAVPTVTESDLSFIGSSMA----LGAVFGSPVV 91 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~----~Grr-~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~g~~~~ 91 (481)
++|++..++|.+.++..+..++..|+.|+++|| +||| +.++.+.+..++...+....++.. ...+ ++
T Consensus 39 ~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~----~~ 114 (444)
T PRK09669 39 VFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYA----CV 114 (444)
T ss_pred hcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHH----HH
Confidence 789999999999999999999999999999998 7874 556667777777766555444211 0123 23
Q ss_pred HHhhccccccceeeee---ecc-----ccccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Q psy7924 92 GNLVDTVGRKNTMLLL---AVP-----SFDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA 163 (481)
Q Consensus 92 ~r~~~~~G~~~~~~~~---~~~-----~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 163 (481)
..++. +.+...... ... .+++|.+..+....+. .+|..++..+..+..
T Consensus 115 ~~~l~--~~~~t~~~ip~~al~~~~t~~~~eR~~l~~~r~~~~--------------------~~G~~i~~~~~~pl~-- 170 (444)
T PRK09669 115 TYILL--SLVYTAINVPYCAMPGAITNDPRERHSLQSWRFALS--------------------FIGGLIVSVIALPLV-- 170 (444)
T ss_pred HHHHH--HHHHHhhcchHHHhHHHhcCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH--
Confidence 23222 222211110 000 1567887777776666 666665554432211
Q ss_pred hHhhccchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhcc
Q psy7924 164 QVIKERKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERS 242 (481)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (481)
...+......+|+..+.+.++++++..+..++ .+|.++. + .+++.+
T Consensus 171 ~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~-----~----------------------------~~~~~~ 217 (444)
T PRK09669 171 DILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP-----E----------------------------VDNSSS 217 (444)
T ss_pred HHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC-----C----------------------------CcCCCC
Confidence 11121223568999888888877766555543 4543200 0 000111
Q ss_pred CccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhc-CCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy7924 243 DKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDA-GSSLNPNLCTIIVGTIMMVTTWIATMIVDRLG 321 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 321 (481)
..+++++.+|++.++......+...... .......+++.+.. +.+...........+..+++.++.++++||+|
T Consensus 218 ~~~~~~~~~~n~~~~~l~~~~~~~~~~~-----~~~~~~~~y~~~~~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g 292 (444)
T PRK09669 218 VWKDLKLLLGNSQWRIMFIFNVVLLTAV-----VTRGGATLYYVNYVLLRPDLATLFLVTGMIAGLFGALLSERLLGKFD 292 (444)
T ss_pred HHHHHHHHhCCchHHHHHHHHHHHHHHH-----HHHhhhhheeeeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 1234566778875444322222221211 11111222222221 11112223444455667788889999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc-------ccchhh
Q psy7924 322 RRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP-------SQIKGI 394 (481)
Q Consensus 322 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~ 394 (481)
+|+.+..+.....+........ . .++.+...+...+.+.+.+. ..+..+++++|..+ .+..|.
T Consensus 293 k~~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~i~g~~~~~-~~~~~~am~ad~~d~~e~~~G~r~~g~ 362 (444)
T PRK09669 293 RVRAFKWTIVAFVILSALIFFI---P------PSNVWLIFALNILFNFIQNL-TTPLQWSMFSDVVDYEEKRSGRRLDGL 362 (444)
T ss_pred hHHHHHHHHHHHHHHHHHHHHh---C------cchHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhcCcCcchH
Confidence 9999887776555433322221 0 12223334444444444443 33556688888875 233466
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 395 AVSIACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 395 ~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
..|..+....+|..+++.+.+.+++..|+.
T Consensus 363 ~~s~~~~~~klg~alg~~i~g~ll~~~Gy~ 392 (444)
T PRK09669 363 VFSTNLFAIKLGLAIGGAVVGWILAWVDYV 392 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 788889999999999999999999988773
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-18 Score=157.48 Aligned_cols=392 Identities=16% Similarity=0.152 Sum_probs=222.9
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhc----cccchhhhhhh-hhhHHHHhHHHHHHHHhHH
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLLL-AVPTVTESDLSFIGSSMAL 82 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Grr~~~~~~-~~~~~~~~~~~~~~~~~~~ 82 (481)
..+.++.+.+ ++|.+..+.+++..+..+...+.+|+.|+++| |+||||.++.+ .....++..+.+++++..
T Consensus 23 ~~~~l~~yl~---~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~- 98 (477)
T TIGR01301 23 QLSLLTPYVQ---ELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIG- 98 (477)
T ss_pred HHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhh-
Confidence 3556666777 89999999999999999999999999999999 59999998875 555556656666655532
Q ss_pred hHhhh-------------hhHHHHhhccccccceeeeeeccc-------cc--cccchhhhhhHHHHHHHhhhccccccc
Q psy7924 83 GAVFG-------------SPVVGNLVDTVGRKNTMLLLAVPS-------FD--IRPLLGETSQVTVWVLISTTNRRISDK 140 (481)
Q Consensus 83 ~~l~g-------------~~~~~r~~~~~G~~~~~~~~~~~~-------~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (481)
.+++ -.+++-.+. .++.........+ ++ +++.+.++.+...
T Consensus 99 -~~~~~~~~~~~~~~~i~~~~i~~~ll--d~~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~-------------- 161 (477)
T TIGR01301 99 -HLFGDNLDKKTKPRAIIVFVVGFWIL--DVANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFM-------------- 161 (477)
T ss_pred -hhccccccccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHH--------------
Confidence 1100 001111111 1111111111111 22 2357788887787
Q ss_pred cccccccchhhhhhhhhhhhhhhhHhhcc------chhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHH
Q psy7924 141 CFVGSDHLAILCPISISQSRRLAQVIKER------KFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAK 213 (481)
Q Consensus 141 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~------~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~ 213 (481)
.+|.++++.++............ ....+.|..|++.++..++..+... ..+|.|... .++.++
T Consensus 162 ------~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~~~~--~~~~~~-- 231 (477)
T TIGR01301 162 ------AIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENPLIG--SDDFIN-- 231 (477)
T ss_pred ------HHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccCCCc--cccchh--
Confidence 88888888877321111100000 0113678899998887777666665 588876211 000000
Q ss_pred HHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcc-hhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCC
Q psy7924 214 ESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPA-AKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGS 291 (481)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~ 291 (481)
+ +. +..++.+....+++++++-+ ..+.+...+...++..+..+....+..+++-++ ++-
T Consensus 232 ~--------------~~-----~~~~~~~~~~~~~~i~~~~~~mP~~m~~l~~vqffsW~a~f~~~~y~T~~vg~~v~~~ 292 (477)
T TIGR01301 232 S--------------EA-----APPSKHGEEAFFGELFGAFKYLPRPVWILLLVTCLNWIAWFPFILFDTDWMGREVYGG 292 (477)
T ss_pred h--------------hc-----ccccccchhhhHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHcCC
Confidence 0 00 00000001112233332211 123333344444444433333344444444433 222
Q ss_pred CC------chh-----HHHHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhhcCC--C------C
Q psy7924 292 SL------NPN-----LCTIIVGTIMMVTTWIATMIVDRLGR-RILLLVSAVIMALSTLTMGYYFYLKNS--G------S 351 (481)
Q Consensus 292 ~~------~~~-----~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~--~------~ 351 (481)
++ +.+ +......+...+.+++..++.+|+|+ |+....+.++.++++....+.-...++ . .
T Consensus 293 ~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~ 372 (477)
T TIGR01301 293 SVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAATVLVTYVAKNSRYYDGDGES 372 (477)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 21 111 23444555556777788899999985 677788888888887777654321110 0 0
Q ss_pred --CccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcc--cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc--CCh
Q psy7924 352 --DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPS--QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG--GHG 425 (481)
Q Consensus 352 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g--~~~ 425 (481)
.+....+..++.....++..+. ...++++++++..|+ +..|..+|+.|.+-.+...+.....|.+.+..| ...
T Consensus 373 ~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~ 451 (477)
T TIGR01301 373 LPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLP 451 (477)
T ss_pred cCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCee
Confidence 0000013344444455554443 346778899999885 445999999999999999999988888666665 334
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 426 AFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
.+.+.++..++.++...+.+|+++.
T Consensus 452 ~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 452 AFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 5666677777778888888887653
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.3e-19 Score=144.21 Aligned_cols=343 Identities=13% Similarity=0.054 Sum_probs=194.8
Q ss_pred Cccccccccccc--cccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHH--
Q psy7924 1 MGTILGWTSPAG--DRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSF-- 75 (481)
Q Consensus 1 ~g~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~-- 75 (481)
+|-.+.|++|.- ..... |.+++.++..++.++|+....+.+.++|++.|| +|-|..-++-.....+|.++.+
T Consensus 54 fgsyfcyd~p~alq~~fk~---d~ni~~akftLlYsvYSwPNvVlcffgGflidr~fgir~gtii~~~fv~~GqliFa~G 130 (459)
T KOG4686|consen 54 FGSYFCYDAPGALQIDFKL---DSNIEYAKFTLLYSVYSWPNVVLCFFGGFLIDRRFGIRLGTIILCIFVFLGQLIFAAG 130 (459)
T ss_pred ccceeecCCchhhhhhhhc---ccccceeeeeeeeeeccCCCEEEeeecceeehhhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 355667777743 44455 889999999999999999999999999999995 7888876666666677776654
Q ss_pred -HHHHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccccccccc
Q psy7924 76 -IGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDH 147 (481)
Q Consensus 76 -~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (481)
..+.+| .+ +++|++. |+|.-...+.... .++-+.+.++..... -
T Consensus 131 gi~~aFw--~M----~~GRF~F--GIGgESlAVaQN~yav~wFKGKELn~vfGlqlSvA--------------------R 182 (459)
T KOG4686|consen 131 GISHAFW--TM----LAGRFLF--GIGGESLAVAQNKYAVYWFKGKELNFVFGLQLSVA--------------------R 182 (459)
T ss_pred hHHHHHH--HH----Hhhheee--ccCchhhhhhhcceeEEEecCccccchhhHHHHHH--------------------H
Confidence 567888 99 9999999 9987544433333 344455555444443 3
Q ss_pred chhhhhhhhhhhhh--hhhHh-hccchhhHHHHHHH-HhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCC
Q psy7924 148 LAILCPISISQSRR--LAQVI-KERKFEASVYGLSI-ICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSE 223 (481)
Q Consensus 148 ~G~~~~~~~~~~~~--~~~~~-~~~~~~~~w~~~~~-~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~ 223 (481)
+|..+-..+..... ..... +......|-...+- ......++.+...- -.+|+|++.+.+-++
T Consensus 183 ~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical~lg------------~~D~rAerilh~e~g-- 248 (459)
T KOG4686|consen 183 LGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICALSLG------------LSDDRAERILHLEEG-- 248 (459)
T ss_pred hhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHhh------------hhhhHHHHHHhhhcC--
Confidence 33332222221000 00000 00001111111111 11111111111110 112223322221110
Q ss_pred ccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhH-HHhhhcCCCC-chhHHHHH
Q psy7924 224 YDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTV-KIFKDAGSSL-NPNLCTII 301 (481)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~-~~~~~~~~ 301 (481)
...+...+.+... +..+++....++.+.... ..-+....| .+.+.+|+++ +++.+...
T Consensus 249 ----------------~~Ge~pkLtdv~~---f~ppfw~~~iicv~yyva-~fPFi~lg~~fF~~rfGlS~~~a~~i~s~ 308 (459)
T KOG4686|consen 249 ----------------FLGEEPKLTDVNT---FYPPFWVLVIICVLYYVA-WFPFITLGPMFFQKRFGLSAVSAGNILST 308 (459)
T ss_pred ----------------cccCCcccccccc---cCccHHHHHHHHHHHHHH-HHHHhhhhHHHHHHhhCCChhhccchhhh
Confidence 0000111111111 122233333333322222 122222333 4445689998 66777777
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH-HHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhh
Q psy7924 302 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMAL-STLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPW 380 (481)
Q Consensus 302 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
......+.+++.|.++||+|++...+.+..+..+ +-..+.+. .+-....+++.+..+.....+ .|
T Consensus 309 vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-------------~lsPy~~m~~lGLsysllAcs-lW 374 (459)
T KOG4686|consen 309 VYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-------------FLSPYTSMTFLGLSYSLLACS-LW 374 (459)
T ss_pred hhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------------hccHHHHHHHHhhhHHHHHHH-Hh
Confidence 7788889999999999999998777665544433 33333332 122334445555554443332 36
Q ss_pred hhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 381 MLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 381 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
..++.+.|+++-|++.|.++.+.++|-++.|.+.|.+.|.-|
T Consensus 375 P~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g 416 (459)
T KOG4686|consen 375 PCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDG 416 (459)
T ss_pred hhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCC
Confidence 777888999999999999999999999999999999988766
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-18 Score=161.90 Aligned_cols=335 Identities=14% Similarity=0.048 Sum_probs=184.9
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhc----cccc-hhhhhhhhhhHHHHhHHHHHHHHh----HHhHhhhhhHH
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGR-KNTMLLLAVPTVTESDLSFIGSSM----ALGAVFGSPVV 91 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Gr-r~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~g~~~~ 91 (481)
.+|++..++|.+..+.-+..++..|+.|.++| |+|| |+.++.+.+..+++..+....++. .+..+ ++
T Consensus 36 v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~----~~ 111 (473)
T PRK10429 36 VVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFV----CV 111 (473)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHH----HH
Confidence 56999999999999999999999999999999 6699 566777777777776555432211 10022 22
Q ss_pred HHhhccccccceeee-------eec-cccccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Q psy7924 92 GNLVDTVGRKNTMLL-------LAV-PSFDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA 163 (481)
Q Consensus 92 ~r~~~~~G~~~~~~~-------~~~-~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 163 (481)
.-++. +.+..... +.. ..+++|.+..++...+. .+|..+...+..+..
T Consensus 112 ~~~l~--~~~~t~~~ip~~al~~~lt~~~~eR~~l~~~~~~~~--------------------~ig~~~~~~~~~~~~-- 167 (473)
T PRK10429 112 TYILW--GMTYTIMDIPFWSLVPTLTLDKREREQLVPYPRFFA--------------------SLAGFVTAGFTLPFV-- 167 (473)
T ss_pred HHHHH--HHHHHHHcchHHhhhHHhCCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH--
Confidence 22232 22221111 111 11778888777755555 555444333321110
Q ss_pred hHhhccchhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhcc
Q psy7924 164 QVIKERKFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERS 242 (481)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (481)
...+......+|+....+.+++.++..+..+ ..+|.++. .+ ++ .+.+++.+
T Consensus 168 ~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~-~~-----------------------~~~~~~~~ 219 (473)
T PRK10429 168 NYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS----DN-QV-----------------------SAEGSHLT 219 (473)
T ss_pred HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc----cc-cc-----------------------cccccCCC
Confidence 1112222345788888777777666555544 36664310 00 00 00000001
Q ss_pred CccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy7924 243 DKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLG 321 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g 321 (481)
.++.++..++|+.++..+...+.... .......+.+++.+....+. ..+.......+..+++.++.++++||+|
T Consensus 220 ~~~~~~~~~~n~~~~~ll~~~~~~~~-----~~~~~~~~~~y~~~y~~~~~~~~~~~~~~~~i~~ii~~~~~~~l~~r~g 294 (473)
T PRK10429 220 LKDIVALIYKNDQLSCLLGMALAYNI-----ASNIINGFAIYYFTYVIGDADLFPYYLSYAGAANLVTLILFPRLVKSLS 294 (473)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHH-----HHHHHhhheeeEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 11223344566433222222111111 12222333344444322222 2334455556778899999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc-------ccchhh
Q psy7924 322 RRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP-------SQIKGI 394 (481)
Q Consensus 322 rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r~~ 394 (481)
+|+.+..+..+..++.+......... ....+...+...+.+.+.+... +..+++.+|..+ .+..|.
T Consensus 295 kk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~i~~~l~g~~~~~~~-~~~~am~ad~id~~e~~tG~R~~G~ 367 (473)
T PRK10429 295 RRILWAGASIFPVLSCGVLLLMGLAA------PHNALLIVIAGILLNIGTALFW-VLQVIMVADTVDYGEYKLGIRCESI 367 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhccC------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhhhhhhHhcCccchhH
Confidence 99998887776665554443211111 1122233333333444444333 444577888855 333466
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q psy7924 395 AVSIACLFNWVSVLVVTKFFGDVTLLLGG 423 (481)
Q Consensus 395 ~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 423 (481)
..|.......++..+++.+.|.+++..|+
T Consensus 368 ~~s~~~~~~K~~~al~~~i~g~~l~~~Gy 396 (473)
T PRK10429 368 AYSVQTMVVKGGSAFAAFFIGVVLGLIGY 396 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 78899999999999999999999988776
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=9e-19 Score=166.09 Aligned_cols=375 Identities=14% Similarity=0.048 Sum_probs=197.9
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHH-HhHHhHhhhhhHHHHhhccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGS-SMALGAVFGSPVVGNLVDTV 98 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~r~~~~~ 98 (481)
++|+++++.+++.+.+........+++|+++|| +|||+++..+.++..++..++++++ +.. .+ .++|++.
T Consensus 51 ~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~--~l----~~~~~l~-- 122 (500)
T PRK09584 51 QLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAG--IV----YMGMATI-- 122 (500)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhcccHH--HH----HHHHHHH--
Confidence 899999999999988877767777899999999 5999999999999999999988875 344 55 7888888
Q ss_pred cccceeeeeeccc------cc---cccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhcc
Q psy7924 99 GRKNTMLLLAVPS------FD---IRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKER 169 (481)
Q Consensus 99 G~~~~~~~~~~~~------~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 169 (481)
|++.|...+.... ++ +|....+....+. ++|..+++.+. +..
T Consensus 123 gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~--------------------~iG~~~gp~i~---------g~l 173 (500)
T PRK09584 123 AVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSI--------------------NIGSFFSMLAT---------PWL 173 (500)
T ss_pred HHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHH--------------------HHHHHHHHHHH---------HHH
Confidence 8888876655433 22 2334556666666 78888877776 223
Q ss_pred chhhHHHHHHHHhhHHHHHHHHHHh----ccCCChhHHhhcCcHHHHHHHH-----------H-HHhCCCccchHHHHHH
Q psy7924 170 KFEASVYGLSIICALLPIFFVGLML----LMPESPQFHLKKNRVKQAKESL-----------Q-WFRGSEYDIDSEITDM 233 (481)
Q Consensus 170 ~~~~~w~~~~~~~~~~~~~~~~~~~----~~~esp~~l~~~~~~~~a~~~~-----------~-~~~~~~~~~~~~~~~~ 233 (481)
.+..+||+.|.+.++..++..+... .++|.++- ..+++.|...... . ....+. +........
T Consensus 174 ~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 251 (500)
T PRK09584 174 AAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIATWLLHNQ-EIARMALGV 251 (500)
T ss_pred HHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHH
Confidence 3567899999988764444332221 23332110 0000011100000 0 000000 000000000
Q ss_pred ---HHhhhhhccCccchHHHhc-CcchhhhHHHHHHHHH--HHHhhhhhhhhHhhHHH-hhh-----cCCCCchhHHHHH
Q psy7924 234 ---QNSLEKERSDKVPLMQAFS-TPAAKRGLLIGLGVMF--IQQFGGINAVVFYTVKI-FKD-----AGSSLNPNLCTII 301 (481)
Q Consensus 234 ---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~-----~g~~~~~~~~~~~ 301 (481)
...... .++..+ ++..+++.+..+.... ...+..+.....+.... .++ .|...........
T Consensus 252 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~~~~q~~~~l~~~~~~~~~~~~~g~~i~~~~~~s~ 324 (500)
T PRK09584 252 VALGIVVIF-------GKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAVEPEQYQAL 324 (500)
T ss_pred HHHHHHHHH-------HHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccceEECHHHHHHH
Confidence 000000 000000 0001122222221111 11111111111111111 111 1222234455555
Q ss_pred HHHHHHHHHHHHHHH----HHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCc
Q psy7924 302 VGTIMMVTTWIATMI----VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGP 377 (481)
Q Consensus 302 ~~~~~~~~~~~~g~l----~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
..+..++..++..++ .||.+..+.+.++.++.+++.+.+.......++.. ..+.++.+....+.+.+... ..|
T Consensus 325 n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~~~--~vs~~~~~~~~~l~~~ge~~-~~p 401 (500)
T PRK09584 325 NPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAG--IVSVNWLIASYGLQSIGELM-ISG 401 (500)
T ss_pred hHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--ccCHHHHHHHHHHHHHHHHH-HhH
Confidence 555555555555444 44444556777888888888877665432211111 11233444445555555433 445
Q ss_pred hhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH----------HhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 378 IPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT----------LLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 378 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~----------~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
....++.+..|++.||+.+|+......+|+.++..+.+... ...++...|...++++++.+++....
T Consensus 402 ~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~a~~~~~~ 478 (500)
T PRK09584 402 LGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVANLMAVPDNVTDPLMSLEVYGRVFLQIGIATAVIAVLMLLT 478 (500)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 55688889999999999999887666666666655543211 01124556666666666555554443
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.80 E-value=2e-18 Score=162.36 Aligned_cols=356 Identities=13% Similarity=0.014 Sum_probs=205.1
Q ss_pred ccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcccc-----chhhhhhhhhhHH-HHhHHHHHHHHhHHh
Q psy7924 10 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLLLAVPTV-TESDLSFIGSSMALG 83 (481)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~~ 83 (481)
+..|.+.+ ++|+++++++...+...+...+-.+ +|+++||++ ||+.++++.++.. +.....+..++..
T Consensus 47 ~~~~~l~~---~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~-- 120 (468)
T TIGR00788 47 PLSPMLTD---DLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSA-- 120 (468)
T ss_pred hhhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchH--
Confidence 34455666 8999999999999999999999765 999999998 7887887776653 3322223223433
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
... .+..++. +++.+...+..-. ++++....+.....+ +...+|.+++..++
T Consensus 121 ~~~---~~~~~l~--~~~~a~~dv~~da~~~e~~~~~~~~~~~~~s~~~-----------------~~~~~G~~vg~~l~ 178 (468)
T TIGR00788 121 KVA---AAFIFLA--ALAKALYDVLVDSLYSERIRESPSAGPSLVSWMW-----------------GASATGGLISSLLG 178 (468)
T ss_pred HHH---HHHHHHH--HHHHHHHHHhHHHHHhhhhhcCCCcCCCeeeHHH-----------------HHHHHHHHHHHHHH
Confidence 220 3356666 5555443332222 222222222222222 00135666666665
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSL 237 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (481)
+......+||..|++.+...++..+...++||++.....+.+.++ ... ..... ... .
T Consensus 179 ---------G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~~~~~~~~~~~~-~~~---------~~~~~-~~~---~ 235 (468)
T TIGR00788 179 ---------GPLLDKTLTRILFLITAALLLLQLFVSNLSKERRAFVRPRIGTYL-EMN---------MALLT-LGV---L 235 (468)
T ss_pred ---------HHHHHhcCcchHHHHHHHHHHHHHHHHHhcccccccccccccccc-hhh---------hhhhh-hhH---H
Confidence 222255689999999988887776556678886311000000000 000 00000 000 0
Q ss_pred hhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHH
Q psy7924 238 EKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMI 316 (481)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l 316 (481)
+..++...+.++.+++|..++.+...++. +. .... .....+. +..+..|+++ ..+......+++.+++..+.+++
T Consensus 236 ~~~~~~~~~l~~~l~~~~i~~~l~fifl~-~~-~~~~-~~~~~f~-~~~~~lG~s~~~~G~~~~~~~v~~i~g~~~~~~~ 311 (468)
T TIGR00788 236 ANVKVQILGLRGAIQLLEIAKPLIFIFLS-YA-NLPG-ASGSVFC-ATTQCLPGGPSFSGMSKVVGNLGSLCGVGGYDRF 311 (468)
T ss_pred HHHHHHHHHHHHHHhcHHHHHHHHHHHHH-Hh-hcCC-CCceeEE-EEcccCCCCcchhhhHHHHHHHHHHHHHHHHHHH
Confidence 00001112344456655444322222221 11 1111 1111111 1123467777 66777778889999999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHH
Q psy7924 317 VDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAV 396 (481)
Q Consensus 317 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~ 396 (481)
.+|++.|+.+..+.++..++.+.........+.... ....+.......+...+.+....+.. .++.+..|++.+++..
T Consensus 312 ~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~~~g-i~~~~~~~~~~~l~~~~~g~~~~~~~-~~~~~~~p~~~egt~~ 389 (468)
T TIGR00788 312 LKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNLAFG-ISDEVFVLGDSIIAEVLAQLKFMPFL-VLLARLCPSGCESSVF 389 (468)
T ss_pred HhhCCHHHHHHHHHHHHHHHHhCceeeeeccccccC-CCCeeeeeehhHHHHHHHHHHHccHH-HHHHHhCCCCceehHH
Confidence 999999999998888888776554321100000000 01122333444555666666666765 8888999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 397 SIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 397 g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
++.+.+.++|..+++.+.+.+.+..|
T Consensus 390 al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 390 ALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999988887
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=153.90 Aligned_cols=336 Identities=15% Similarity=0.151 Sum_probs=213.2
Q ss_pred ccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhc----cccchhh-hhhhhhhHHHHhHHHHHH-H-HhH---
Q psy7924 12 GDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNT-MLLLAVPTVTESDLSFIG-S-SMA--- 81 (481)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Grr~~-~~~~~~~~~~~~~~~~~~-~-~~~--- 81 (481)
.+.+.+ .+++++...|.+..+..+-.++..|+.|.++| |+||||. ++++.+..+++..++... + +..
T Consensus 25 ~~f~~~---~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~ 101 (428)
T PF13347_consen 25 LYFYTD---VLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTA 101 (428)
T ss_pred HHHHHH---HcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhhhhh
Confidence 344445 67999999999999999999999999999999 8997665 556777777777776655 3 111
Q ss_pred -HhHhhhhhHHHHhhccccccceeeeeeccc--------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhh
Q psy7924 82 -LGAVFGSPVVGNLVDTVGRKNTMLLLAVPS--------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILC 152 (481)
Q Consensus 82 -~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 152 (481)
...+ .+.-++. .++.........+ +++|.+..+....+. .+|.++
T Consensus 102 ~~~~~----~~~~~l~--~~~~t~~~i~~~al~~~lt~~~~~R~~l~~~~~~~~--------------------~~g~~l 155 (428)
T PF13347_consen 102 KLVWL----FVFYILF--DIAYTFVQIPYNALIPELTPDPDERTRLSSWRMIFS--------------------MIGSLL 155 (428)
T ss_pred HHHHH----HHHHHHH--HHhhhhccCchhhcCccccccHhhhhhHHHHHHHHH--------------------HHHHHH
Confidence 0022 2333333 3332222211111 678899888888877 777754
Q ss_pred hhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHH
Q psy7924 153 PISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT 231 (481)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 231 (481)
...+..... ...+......+|++...+.+++.++......+ .+|.++ +
T Consensus 156 ~~~~~~~l~--~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~----------------------- 204 (428)
T PF13347_consen 156 ASFLAPILV--SWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------E----------------------- 204 (428)
T ss_pred HHHHhhhhh--hhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------c-----------------------
Confidence 444442111 11222212248999999998888877766664 676210 0
Q ss_pred HHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCCchhHHHHHHHHHHHHHH
Q psy7924 232 DMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSLNPNLCTIIVGTIMMVTT 310 (481)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 310 (481)
.++.+++.+-++.+++.+++|.+++.....+ +.... ........+++.+. .+.+...+.......+..+++.
T Consensus 205 --~~~~~~~~~~~~~~~~~~~nr~~~~l~~~~~-~~~~~----~~~~~~~~~y~~~~vl~~~~~~~~~~~~~~~~~~v~~ 277 (428)
T PF13347_consen 205 --VTEQEKKISLRDSLRSLFRNRPFRILLLAFF-LQWLA----FALMNTFLPYYFTYVLGNEGLISIFMLIFFVASIVGS 277 (428)
T ss_pred --ccccccccccccchhhhcccchHHHHHHHHH-HHHhh----hhhhhhHHHHHHHHHhcCchhhHHHHHHHHHHHHHHH
Confidence 0001112223445677788865443322222 22222 12222233333333 3333344556667788889999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcc-
Q psy7924 311 WIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPS- 389 (481)
Q Consensus 311 ~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~- 389 (481)
++.++++||+|+|+.+..+..+.+++.+.+.+.. .++.+...+...+.+.+.+... ...+++.+|..+.
T Consensus 278 ~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~l~gi~~~~~~-~~~~a~~ad~id~~ 347 (428)
T PF13347_consen 278 PLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLG---------PGSPWLVLILFILAGIGYGAFF-VIPWAMLADVIDYD 347 (428)
T ss_pred HHHHHHHHHccceeehhhhHHHHHHHHHHHHHHH---------hhhHHHHHHHHHHhHhhhcccc-cccccccccchhhH
Confidence 9999999999999999999999998888776641 1344555555556665555444 5556888888763
Q ss_pred ------cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 390 ------QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 390 ------~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
+..|...|+.+....++..+++.+.+.+++..|+.
T Consensus 348 e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~Gy~ 388 (428)
T PF13347_consen 348 EWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVGYD 388 (428)
T ss_pred HHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhCcC
Confidence 34588899999999999999999999988877654
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-16 Score=144.11 Aligned_cols=330 Identities=16% Similarity=0.157 Sum_probs=209.8
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhc----cccch-hhhhhhhhhHHHHhHHHHHHHHhH----HhHhhhhhHH
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRK-NTMLLLAVPTVTESDLSFIGSSMA----LGAVFGSPVV 91 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Grr-~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~g~~~~ 91 (481)
..|++...+|.+..+.-+--++.-|+.|.+.| |+||| +-++.+.+..++.+.++..++++. .... .+
T Consensus 42 v~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya----~v 117 (467)
T COG2211 42 VFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYA----LV 117 (467)
T ss_pred ccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHH----HH
Confidence 67999999999999999999999999999999 47874 567777788888888888877421 0012 23
Q ss_pred HHhhccccccceeeeeeccc--------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Q psy7924 92 GNLVDTVGRKNTMLLLAVPS--------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA 163 (481)
Q Consensus 92 ~r~~~~~G~~~~~~~~~~~~--------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 163 (481)
.-.+. +++.......-.+ +++|.+..+....+. .+|.++...+..+ +.
T Consensus 118 tY~l~--~l~YT~vniPy~al~~~iT~d~~ER~~l~s~R~~~~--------------------~~g~~l~~~~~~p--lv 173 (467)
T COG2211 118 TYMLL--GLGYTLVNIPYGALGPEITQDPQERASLTSWRMVFA--------------------SLGGLLVAVLFPP--LV 173 (467)
T ss_pred HHHHH--HHHHHheeCchhhcchhhcCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHH--HH
Confidence 33333 4443332211111 889999999988888 7876665555422 12
Q ss_pred hHhhccchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhh-hhc
Q psy7924 164 QVIKERKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLE-KER 241 (481)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 241 (481)
...+......+|+....+.+++.++..+..++ .+|.+.- .. ..++ .+.
T Consensus 174 ~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~~---~~---------------------------~~~~~~~~ 223 (467)
T COG2211 174 KLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVVE---TQ---------------------------PTKTGVKL 223 (467)
T ss_pred HHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccCc---cc---------------------------cCcccccc
Confidence 23333334679999999999888887777775 6664310 00 0000 011
Q ss_pred cCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH
Q psy7924 242 SDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR 319 (481)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~ 319 (481)
+.+.++...++|+.++...+..++.... .+.......++.+. .|.+. .............+++.++..++.+|
T Consensus 224 ~~~~~~~~~~~Nrp~~~~l~~~l~~~~~-----~~i~~s~~~yy~~y~lg~~~l~~~~~~~~~~~~~l~~~~~~p~L~~~ 298 (467)
T COG2211 224 KLKDSFLLIFKNRPLLLLLLMNLLLFIA-----FNIRGSIMVYYVTYVLGDPELFAYLLLLASGAGLLIGLILWPRLVKK 298 (467)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHHHH-----HHHHhhhhheeEEEEcCChHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 1122334567776544433322222221 22222222222222 23333 33445555556667778999999999
Q ss_pred hCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc-------ccch
Q psy7924 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP-------SQIK 392 (481)
Q Consensus 320 ~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-------~~~r 392 (481)
+|+|+.+..+.++.+++.+.+.+.. .++....++..++.+.+.+ ...+++|++++|..+ .+.-
T Consensus 299 ~gkk~~~~~~~~~~~i~~~~~~f~~---------~~~~~l~~~~~~i~~~g~~-~~~~l~wam~~d~vDyge~~TG~R~e 368 (467)
T COG2211 299 FGKKKLFLIGLLLLAVGYLLLYFTP---------AGSVVLIVVALIIAGVGTG-IANPLPWAMVADTVDYGEWKTGVRRE 368 (467)
T ss_pred hchHHHHHHHHHHHHHHHHHHHhhc---------CcchHHHHHHHHHHHHHhh-ccccccHHHhcchhhHHHHHhCCCch
Confidence 9999999999999999888887741 1233333444344444443 345777899888753 2344
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q psy7924 393 GIAVSIACLFNWVSVLVVTKFFGDVTLLLGG 423 (481)
Q Consensus 393 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 423 (481)
|...+....+.-+|.+++..+.|++++..|+
T Consensus 369 Gi~~s~~tF~~K~g~ala~~~~g~~L~~~Gy 399 (467)
T COG2211 369 GIVYSGMTFFRKLGLALAGFIPGWILGAIGY 399 (467)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 7778888999999999999999999988775
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-17 Score=156.22 Aligned_cols=324 Identities=15% Similarity=0.048 Sum_probs=174.3
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccc----cchhhh-hhhhhhHHHHhHHHHHHH-----HhHHhHhhhhhH
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV----GRKNTM-LLLAVPTVTESDLSFIGS-----SMALGAVFGSPV 90 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~----Grr~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~l~g~~~ 90 (481)
.+|++..++|.+.+...+..++..++.|+++||. ||||.. ..+.+...+...+....+ +...... +
T Consensus 38 ~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 113 (448)
T PRK09848 38 VAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYA----Y 113 (448)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHH----H
Confidence 6799999999999999999999999999999986 777644 555554444444432111 1110012 2
Q ss_pred HHHhhccccccceeeeeec----c--c--cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Q psy7924 91 VGNLVDTVGRKNTMLLLAV----P--S--FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRL 162 (481)
Q Consensus 91 ~~r~~~~~G~~~~~~~~~~----~--~--~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 162 (481)
..-++. +.+.+...+.. . . +++|....+....+.. .++..++..+++.+..
T Consensus 114 ~~~~~~--~~~~~~~~~~~~al~~~~~~~~~~r~~~~~~r~~~~~---------------~~~~~~~~~~~p~i~~---- 172 (448)
T PRK09848 114 LTYMGL--GLCYSLVNIPYGSLATAMTQQPQSRARLGAARGIAAS---------------LTFVCLAFLIGPSIKN---- 172 (448)
T ss_pred HHHHHH--HHHHHHhcccHhhhhhhhcCCHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHH----
Confidence 222333 33333332111 1 1 5567766555544330 0000233333333331
Q ss_pred hhHhhcc--chhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhh
Q psy7924 163 AQVIKER--KFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEK 239 (481)
Q Consensus 163 ~~~~~~~--~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (481)
..+.. .....|+. +.+++.++..+... ..||+++. + ++
T Consensus 173 --~~g~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~e~~~~---~-------------------------------~~ 213 (448)
T PRK09848 173 --SSPEEMVSVYHFWTI---VLAIAGMVLYFICFKSTRENVVR---I-------------------------------VA 213 (448)
T ss_pred --hCCCchhhhHHHHHH---HHHHHHHHHHHHHHcCcEeccCC---C-------------------------------cc
Confidence 00100 01223443 33333333333333 35654310 0 00
Q ss_pred hccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCCchhHH-HHHHHHHHHHHHHHHHHHH
Q psy7924 240 ERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSLNPNLC-TIIVGTIMMVTTWIATMIV 317 (481)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~-~~~~~~~~~~~~~~~g~l~ 317 (481)
+...+.++++++|++.++......+.... .........+++.++ .|.+...... .....+..+++.++.+++.
T Consensus 214 ~~~~~~~~~~l~~n~~f~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 288 (448)
T PRK09848 214 QPSLKISLQTLKRNRPLFMLCIGALCVLI-----STFAVSASSLFYVRYVLNDTGLFTVLVLVQNLVGTVASAPLVPGMV 288 (448)
T ss_pred CCCHHHHHHHHhCCchHHHHHHHHHHHHH-----HHHHHhhhheeeEeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00112235667887654332222222211 122233344444443 4544332322 3333456778899999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc-------
Q psy7924 318 DRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ------- 390 (481)
Q Consensus 318 d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~------- 390 (481)
||+|+|+.+..+.++..++.+.+.+. . ..+.+.......+.+.+.+... +..+++.+|..|.+
T Consensus 289 ~r~g~~~~~~~g~~~~~i~~~~~~~~---~------~~~~~~~~~~~~l~g~G~~~~~-~~~~al~~~~~~~~~~~~g~r 358 (448)
T PRK09848 289 ARIGKKNTFLIGALLGTCGYLLFFWV---S------VWSLPVALVALAIASIGQGVTM-TVMWALEADTVEYGEYLTGVR 358 (448)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHc---C------chhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHhhCcc
Confidence 99999999999888877776655431 0 1122333333444444444443 34456777777643
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q psy7924 391 IKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGG 423 (481)
Q Consensus 391 ~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 423 (481)
.+|...|+.+....+|..+++.+.+.+++..|+
T Consensus 359 ~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G~ 391 (448)
T PRK09848 359 IEGLTYSLFSFTRKCGQAIGGSIPAFILGLSGY 391 (448)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 458899999999999999999999998887776
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.4e-16 Score=144.81 Aligned_cols=367 Identities=16% Similarity=0.155 Sum_probs=200.8
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhh-hhhHHHHhHHHHHH-HHhHHhHhhhhhHHHHhhcccccccee
Q psy7924 27 SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLL-AVPTVTESDLSFIG-SSMALGAVFGSPVVGNLVDTVGRKNTM 104 (481)
Q Consensus 27 ~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~-~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~r~~~~~G~~~~~ 104 (481)
+-.++..++..+..++..|+.|.++|+-|+||.++.. ..+..+.+....+. ++.+ .......+++.+.. +.+...
T Consensus 70 s~~~~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~-~~~~~l~iia~v~~--~~~~vf 146 (477)
T PF11700_consen 70 SLWLYANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFVSPGQW-WLALVLFIIANVGY--EASNVF 146 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhCcchH-HHHHHHHHHHHHHH--HHHHHH
Confidence 3457888999999999999999999999887765554 44455555555554 3322 02211112222222 222222
Q ss_pred eeeeccc---cccc--------------------------cchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 105 LLLAVPS---FDIR--------------------------PLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 105 ~~~~~~~---~~~r--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
.....+. ++.+ ++..+...... .+|.++...
T Consensus 147 yna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~G--------------------y~G~~v~l~ 206 (477)
T PF11700_consen 147 YNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALG--------------------YIGGLVALL 206 (477)
T ss_pred HHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHH--------------------HHHHHHHHH
Confidence 2222222 3333 55554444333 566666555
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHH-HhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGL-MLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQ 234 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~-~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 234 (481)
+........... .....+-|..+.+.++.-++..+- .+++||.|+....+..........++
T Consensus 207 i~l~~~~~~~~~-~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~~~~~~~~~~~~~~g~~~---------------- 269 (477)
T PF11700_consen 207 ISLLLVISPGST-ASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPGPRPLPSGSSYLRFGFKR---------------- 269 (477)
T ss_pred HHHHHHHcCCCc-cccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCcchhHHHHHHHH----------------
Confidence 543221111101 112345688777777765554444 44678876320000000000000000
Q ss_pred HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHh-hHHHhhhcCCCC-chhHHHHHHHHHHHHHHHH
Q psy7924 235 NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFY-TVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWI 312 (481)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~ 312 (481)
-.+.+++..|. +.+..-+...++.. .+...+... ..+..+..|++. +.........+..++|+++
T Consensus 270 --------l~~t~k~~~~~----~~~~~fLia~~l~~-dg~~ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~ 336 (477)
T PF11700_consen 270 --------LWRTFKEIRKL----RQLFLFLIAYFLYS-DGVNTIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALL 336 (477)
T ss_pred --------HHHHHHHHHhC----hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 01122333222 22222222222222 333444333 344445688887 5556777888999999999
Q ss_pred HHHHHHHhCCh--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc
Q psy7924 313 ATMIVDRLGRR--ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ 390 (481)
Q Consensus 313 ~g~l~d~~grr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~ 390 (481)
.+++.||+|.| +++..+.++..+..+...+-....... ..+.+...+...+.+.+.+. ..+...++.+|+.|++
T Consensus 337 ~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g---~~~~~~f~~~a~~~G~~~G~-~qs~sRs~~~~LiP~g 412 (477)
T PF11700_consen 337 FGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFG---LKSPWEFWVLAVLIGLFMGG-IQSASRSLFSRLIPPG 412 (477)
T ss_pred HHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccC---cccHHHHHHHHHHHHHHhhh-HHHHHHHHHHHhCCCc
Confidence 99999999998 777666655533222221100000000 12333344444444444433 3455568889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7924 391 IKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAALGAVFTYILVPETKGK 451 (481)
Q Consensus 391 ~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (481)
+.+...|+....+...+.++|.+.+.+.+..| .+..+....++.+++.++. ..++.+|++
T Consensus 413 ~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 413 REAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH-hhccchhhh
Confidence 99999999999999999999999999999887 5666666665555555444 555554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.1e-16 Score=146.70 Aligned_cols=327 Identities=11% Similarity=0.060 Sum_probs=182.0
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc----ccchh-hhhhhhhhHHHHhHHHHHHHHhH----HhHhhhhhHH
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT----VGRKN-TMLLLAVPTVTESDLSFIGSSMA----LGAVFGSPVV 91 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~----~Grr~-~~~~~~~~~~~~~~~~~~~~~~~----~~~l~g~~~~ 91 (481)
..|+++..+|.+..+.-+--++.-|+.|.++|| +|||| .++++.+..+++..++...++.. ...+ .+
T Consensus 39 ~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~----~~ 114 (460)
T PRK11462 39 IFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYA----AI 114 (460)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHH----HH
Confidence 679999999999999999999999999999995 79865 45567677777776655444211 0022 22
Q ss_pred HHhhccccccceeeee--------eccccccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Q psy7924 92 GNLVDTVGRKNTMLLL--------AVPSFDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA 163 (481)
Q Consensus 92 ~r~~~~~G~~~~~~~~--------~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 163 (481)
.-++. ..+...... ....+++|.+..+....+. .+|..+++.+..+..
T Consensus 115 ~~~~~--~~~~t~~~ipy~al~~~lt~d~~eRt~l~s~r~~~~--------------------~iG~~~~~~~~~plv-- 170 (460)
T PRK11462 115 TYTLL--TLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLA--------------------TAGGMLSTVLMMPLV-- 170 (460)
T ss_pred HHHHH--HHHHHHHhccHHHHHHHhcCCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH--
Confidence 22222 222211111 1111788999999888888 777666655543211
Q ss_pred hHhhccchhhHHHHHHHHhhHHHHHHHHHHhc-cCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhcc
Q psy7924 164 QVIKERKFEASVYGLSIICALLPIFFVGLMLL-MPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERS 242 (481)
Q Consensus 164 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (481)
...+......+|+....+.+++.++.....+. .+|.++- + +++.+
T Consensus 171 ~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-----~-----------------------------~~~~~ 216 (460)
T PRK11462 171 NLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-----P-----------------------------PTTTS 216 (460)
T ss_pred HHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-----C-----------------------------ccCCC
Confidence 11121123357888887777776666555443 4553210 0 00000
Q ss_pred CccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCC
Q psy7924 243 DKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGR 322 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~gr 322 (481)
.++.++..++|+.++. +...................++..+.. +.............+..+++.+++++++||+++
T Consensus 217 ~~~~l~~~~~Nk~~~~-l~~~~~~~~~~~~~~~~~~~y~~~y~~---g~~~~~~~~l~~~~i~~iig~~l~~~l~~r~gk 292 (460)
T PRK11462 217 MREDLRDIWQNDQWRI-VGLLTIFNILAVCVRGGAMMYYVTWIL---GTPEVFVAFLTTYCVGNLIGSALAKPLTDWKCK 292 (460)
T ss_pred HHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHhHhhhhhhhhc---CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 1223455666654332 222222222222221223333433332 222122345556677888899999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc-----ccch--hhH
Q psy7924 323 RILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP-----SQIK--GIA 395 (481)
Q Consensus 323 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-----~~~r--~~~ 395 (481)
|+.+..+.....+..+.+.+. + ........+..++.+.+. ....++.+.+.+|..+ +..| |..
T Consensus 293 k~~~~~~~~~~~~~~~~~~~~---~------~~~~~~~~~~~~l~g~~~-~~~~~l~~~m~ad~~d~~e~~tG~r~~g~~ 362 (460)
T PRK11462 293 VTIFWWTNALLAVISLAMFFV---P------MQASITMFVFIFVIGVLH-QLVTPIQWVMMSDTVDYGEWCNGKRLTGIS 362 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHh---c------hhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhHhhhHHhcCCCchHHH
Confidence 988765544433333222221 1 111112222233333333 2233445566677655 2233 444
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhhcC
Q psy7924 396 VSIACLFNWVSVLVVTKFFGDVTLLLGG 423 (481)
Q Consensus 396 ~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 423 (481)
.+.......+|..+++.+.+.+++..|+
T Consensus 363 ~a~~~f~~Klg~alg~~i~g~iL~~~Gy 390 (460)
T PRK11462 363 FAGTLFVLKLGLAFGGALIGWMLAYGGY 390 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 5666688999999999999998887666
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-15 Score=141.47 Aligned_cols=382 Identities=11% Similarity=-0.060 Sum_probs=191.9
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccc-cchhhhhhhhhhHHHHhHHHHHHHH-hHHhHhhhhhHHHHhhccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTVTESDLSFIGSS-MALGAVFGSPVVGNLVDTV 98 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~g~~~~~r~~~~~ 98 (481)
++|.++.+.+.+.+.+.....++.+++|+++||+ ||||++.++.++..++.++.+...+ .. .++. ...++..
T Consensus 39 ~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~--~~~l--~l~li~i-- 112 (493)
T PRK15462 39 QLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPS--FLYL--SLAIIVC-- 112 (493)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchh--HHHH--HHHHHHH--
Confidence 6899999999999999999999999999999999 9999999999999999877665432 12 2200 2223333
Q ss_pred cccceeeeeeccc------c---ccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhcc
Q psy7924 99 GRKNTMLLLAVPS------F---DIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKER 169 (481)
Q Consensus 99 G~~~~~~~~~~~~------~---~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 169 (481)
|. |...+.... + ++|....++...+. ++|..+++.+. +..
T Consensus 113 G~--G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~--------------------nlG~~iap~l~---------g~L 161 (493)
T PRK15462 113 GY--GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAG--------------------NVGSIIAPIAC---------GYA 161 (493)
T ss_pred hc--ccccccHHHHHHHHCCCCCccccceehHHHHHH--------------------HHHHHHHHHHH---------HHH
Confidence 33 322221111 2 36888888888887 88888888777 333
Q ss_pred chhhHHHHHHHHhhHHHHHHHHHHhc----cCCChhHHhhcCcHHHHHH-HH-HH--HhC-CC-ccchHHHH-HHHHhhh
Q psy7924 170 KFEASVYGLSIICALLPIFFVGLMLL----MPESPQFHLKKNRVKQAKE-SL-QW--FRG-SE-YDIDSEIT-DMQNSLE 238 (481)
Q Consensus 170 ~~~~~w~~~~~~~~~~~~~~~~~~~~----~~esp~~l~~~~~~~~a~~-~~-~~--~~~-~~-~~~~~~~~-~~~~~~~ 238 (481)
....+||+.|.+.++..++..+.... +++.... ..+...++... .. .. +.. .. .-...... +.....-
T Consensus 162 ~~~~Gw~~~F~iaaigm~l~li~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (493)
T PRK15462 162 QEEYSWAMGFGLAAVGMIAGLVIFLCGNRHFTHTRGV-NKKVLRATNFLLPNWGWLLVLLVATPALITVLFWKEWSVYAL 240 (493)
T ss_pred HhhhChHHHHHHHHHHHHHHHHHHHHhhhhhccCCCC-CCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999998876544333332222 1111000 00000000000 00 00 000 00 00000000 0000000
Q ss_pred hh-c-cCcc----chHHHhcCcchhhhHHHHHHHH--HHHHhhhhhhhhHhhHHHhhh------cCCCCchhHHHHHHHH
Q psy7924 239 KE-R-SDKV----PLMQAFSTPAAKRGLLIGLGVM--FIQQFGGINAVVFYTVKIFKD------AGSSLNPNLCTIIVGT 304 (481)
Q Consensus 239 ~~-~-~~~~----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~g~~~~~~~~~~~~~~ 304 (481)
.- . .... -.+.. .++.-++++...+.+. ....+..+.........+.++ .|++..+.....+..+
T Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~~g~~ip~~~~qslNp~ 319 (493)
T PRK15462 241 IVATIIGLGVLAKIYRKA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDMFGYTVPTAMFQSINAF 319 (493)
T ss_pred HHHHHHHHHHHHHHHHhc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchhcceeeCHHHHHhHhHH
Confidence 00 0 0000 00000 0011122222211111 111111111111111111111 2333345666777777
Q ss_pred HHHHHHHHHHHHHHHhCC--hH-----HHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCc
Q psy7924 305 IMMVTTWIATMIVDRLGR--RI-----LLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGP 377 (481)
Q Consensus 305 ~~~~~~~~~g~l~d~~gr--r~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
..++.+++.+++-.|..| |. =+..+.++.+++.+.+.+.....++.. ..+.++.+....+...+ -....|
T Consensus 320 ~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~~~--~~s~~wl~~~~~~~t~g-El~~sP 396 (493)
T PRK15462 320 AVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAMYG--HSSLPLMVLGLAVMGFA-ELFIDP 396 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCC--CcCHHHHHHHHHHHHHH-HHHHCh
Confidence 777777777776566532 21 255677777777766654332222111 12334444444444444 445667
Q ss_pred hhhhhhcccCcccchhhHHHHHHHHH-HHHHHHHHhHHHHHHHh------------hcCChhHHHHHHHHHHH-HHHHHH
Q psy7924 378 IPWMLVGEIFPSQIKGIAVSIACLFN-WVSVLVVTKFFGDVTLL------------LGGHGAFWIFSVIAALG-AVFTYI 443 (481)
Q Consensus 378 ~~~~~~~e~~p~~~r~~~~g~~~~~~-~~g~~~~~~~~~~~~~~------------~g~~~~~~~~~~~~~~~-~~~~~~ 443 (481)
+..+.++++.|++.||..+|+..... .++..++..+.+..... ..+...|...+.+.+++ +++.+.
T Consensus 397 vgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 476 (493)
T PRK15462 397 VAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQASFDASGAINYSINAYIEVFDQITWGALACVGVVLMI 476 (493)
T ss_pred HHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCccccccchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 77799999999999999999986633 46666555554433210 11233555666555555 454444
Q ss_pred h
Q psy7924 444 L 444 (481)
Q Consensus 444 ~ 444 (481)
+
T Consensus 477 ~ 477 (493)
T PRK15462 477 W 477 (493)
T ss_pred H
Confidence 4
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.8e-16 Score=136.01 Aligned_cols=182 Identities=13% Similarity=0.143 Sum_probs=154.8
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy7924 256 AKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA 334 (481)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 334 (481)
++.++++..++.+......-..+..-.|.+.++.+++. +.+.+.+.+.+...++-.+.|.++||.+.|..+..++++++
T Consensus 26 ~r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsa 105 (448)
T COG2271 26 WRIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSA 105 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHH
Confidence 34556666666665555555666777889999988988 77889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHH
Q psy7924 335 LSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFF 414 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 414 (481)
+..+++++ .++.....+...+.+.+.+.++++.. ..++..+|+++||+..++.|+..++|+.+.|++.
T Consensus 106 i~nil~Gf-----------s~s~~~~~~l~~lng~fQg~Gwpp~~-~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~ 173 (448)
T COG2271 106 IVNILFGF-----------SPSLFLFAVLWVLNGWFQGMGWPPCA-RTITHWFSRKERGTWWSIWNTSHNIGGALAPLVA 173 (448)
T ss_pred HHHHHHhh-----------hhHHHHHHHHHHHHHHHhcCCCcHHH-HHHHHHcCccccCceEEEehhhhhcccchHHHHH
Confidence 99999988 34556666677777888888888887 6667999999999999999999999999999999
Q ss_pred --HHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 415 --GDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 415 --~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
+.+.++.+|+..|++-++++++.+++.++..+++.
T Consensus 174 ~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~P 210 (448)
T COG2271 174 LLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRP 210 (448)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 88888889999999999999999999888876653
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-13 Score=119.49 Aligned_cols=161 Identities=13% Similarity=0.112 Sum_probs=109.4
Q ss_pred hhhhhHhhHHHh-hhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy7924 275 INAVVFYTVKIF-KDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 275 ~~~~~~~~~~~~-~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (481)
.+........+- .++|++. +.........+..++|+++.|++.||+|.|+++..+.++..+..+...+.
T Consensus 268 v~til~~~~~fg~~~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--------- 338 (438)
T COG2270 268 VNTILAMGGVFGAADLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--------- 338 (438)
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc---------
Confidence 344444444343 4688876 55667888889999999999999999999998888887776666555442
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC-hhHHHHH
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGH-GAFWIFS 431 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~-~~~~~~~ 431 (481)
.......+..++.+.+.+. .....-++.++++|+++-++..|+++..++..+..+|.+.+.+.+.+|.. ..+....
T Consensus 339 --~~~~~f~i~gll~g~s~G~-~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~ 415 (438)
T COG2270 339 --EGELDFWILGLLVGTSLGG-AQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSII 415 (438)
T ss_pred --cccHHHHHHHHHHHHhcch-HHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 1222233333444443332 33455688899999999999999999999999999999999998887753 3333333
Q ss_pred HHHHHHHHHHHHhccCC
Q psy7924 432 VIAALGAVFTYILVPET 448 (481)
Q Consensus 432 ~~~~~~~~~~~~~~~~~ 448 (481)
++.. ..++.+...|+.
T Consensus 416 vll~-iGl~~L~~v~~~ 431 (438)
T COG2270 416 VLLL-IGLLLLLRVKVP 431 (438)
T ss_pred HHHH-hhHhhEEeecCC
Confidence 3333 333333444544
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-14 Score=123.52 Aligned_cols=275 Identities=15% Similarity=0.079 Sum_probs=164.8
Q ss_pred HHHHHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhcccccccccccccc
Q psy7924 75 FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDH 147 (481)
Q Consensus 75 ~~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (481)
+...++. .+ +++-++. |.|.+...+.... ++++.+..++.+... .
T Consensus 5 ~~~~~~~--~~----l~~~f~~--g~G~~~lq~~~n~~v~~~~~~~~~~~~l~~~~~~~--------------------~ 56 (310)
T TIGR01272 5 ASQRYYV--LF----LGALFVL--ASGLTILQVAANPYVSILGPIETAASRLALTQAFN--------------------K 56 (310)
T ss_pred HHhhHHH--HH----HHHHHHH--HhhHHHHHhhHHHHHHHHCCcchHHHHHHHHHHHh--------------------h
Confidence 3456677 77 8888999 8888877766655 557788888988888 9
Q ss_pred chhhhhhhhhhhhhhhhHhhc-------cchhhHHHHHHHHhhHHHHHHHHHHhc--cCCChhHHhhcCcHHHHHHHHHH
Q psy7924 148 LAILCPISISQSRRLAQVIKE-------RKFEASVYGLSIICALLPIFFVGLMLL--MPESPQFHLKKNRVKQAKESLQW 218 (481)
Q Consensus 148 ~G~~~~~~~~~~~~~~~~~~~-------~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~~~~~~ 218 (481)
+|..+++.+............ .....+|++++++.+.+.++..+.+.+ +||.++ ++++
T Consensus 57 ~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~------- 123 (310)
T TIGR01272 57 LGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA------- 123 (310)
T ss_pred hHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc-------
Confidence 999999888742211100000 012358999999776665555544443 455320 0000
Q ss_pred HhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh---cCCCC-c
Q psy7924 219 FRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD---AGSSL-N 294 (481)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~~~-~ 294 (481)
+. .++ +..+.++.+++|. .++..... +...........|.+.+..+ .|++. +
T Consensus 124 ----------------~~-~~~--~~~~~~~~~~~~~----~~l~~~~~-f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~ 179 (310)
T TIGR01272 124 ----------------RV-SSG--DTTQKTSAFQFTH----LVLGALGI-FVYVGAEVSAGSFLVNFLSDPHALGLPEDQ 179 (310)
T ss_pred ----------------cc-ccc--cccchhhHHhhHH----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCCHHH
Confidence 00 000 0001122344332 22222222 22222223334444444432 46766 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhc
Q psy7924 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
.+........+..+|+++.+++.||+|+|+.+..+..+.+++.++.... +. ........+.+++.+..
T Consensus 180 a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~-----------~~-~~~~~~~~l~g~~~s~i 247 (310)
T TIGR01272 180 AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALT-----------HG-YVAMWFVLALGLFNSIM 247 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc-----------CC-HHHHHHHHHHHHHHHHH
Confidence 5667778888899999999999999999998887777776665443321 11 12223344455555544
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHH
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI 429 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 429 (481)
++.. .+...+.+|++ .+++.++. ..+.+|+++.|++.|.+.|..|.+.++++
T Consensus 248 ~P~~-~s~a~~~~~~~-~~~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~v 299 (310)
T TIGR01272 248 FPTI-FSLALNALGRH-TSQGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFAL 299 (310)
T ss_pred HHHH-HHHHHhhhhhh-hhhhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHHH
Confidence 4443 46666777754 45666775 67889999999999999999888777753
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=133.90 Aligned_cols=181 Identities=15% Similarity=0.084 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy7924 258 RGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS 336 (481)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 336 (481)
+.......+.+..+...........|.+.+++|.+. +.+.......++..++.++.|++.||+|||+.+..+.++..++
T Consensus 7 ~~~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~ 86 (412)
T TIGR02332 7 RRLIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIA 86 (412)
T ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHH
Confidence 334444444545555555666667788888888887 6677888888999999999999999999999999999888888
Q ss_pred HHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHH
Q psy7924 337 TLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416 (481)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~ 416 (481)
.+...+. ++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+....+|..+++.+.+.
T Consensus 87 ~~~~~~~-----------~~~~~l~~~r~l~G~~~~~~-~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~ 154 (412)
T TIGR02332 87 STATMFA-----------TGPESLYLLRILVGIAEAGF-LPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGY 154 (412)
T ss_pred HHHHHHh-----------cCHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8877652 23344445555555554443 34444778999999999999999999999999999999888
Q ss_pred HHH------hhcCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 417 VTL------LLGGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 417 ~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
+.+ ..||++.|.+.++..++..++.++++||+++
T Consensus 155 l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~ 194 (412)
T TIGR02332 155 ILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPD 194 (412)
T ss_pred HHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcc
Confidence 764 3589999998888877777767677787654
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=135.81 Aligned_cols=161 Identities=14% Similarity=0.144 Sum_probs=125.7
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.......|.+.++.|.+. +.+.......++..+++++.|++.||+|||+.+..+.++..++.+.....
T Consensus 40 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----------- 108 (434)
T PRK11663 40 KSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS----------- 108 (434)
T ss_pred hhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-----------
Confidence 345667788888888887 56778888889999999999999999999999999999888887766552
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIA 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 434 (481)
++.+...+...+.+.+.+..... ...++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..||++.|.+.+++.
T Consensus 109 ~~~~~l~~~~~l~g~~~g~~~~~-~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~ 187 (434)
T PRK11663 109 SSLWAFALLWVLNAFFQGWGWPV-CAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIA 187 (434)
T ss_pred hHHHHHHHHHHHHHHHHHccchH-HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 23333334344445555444433 34788899999999999999999999999999999999999999999998887776
Q ss_pred HHHHHHHHHhccCC
Q psy7924 435 ALGAVFTYILVPET 448 (481)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (481)
++..+...+.+||+
T Consensus 188 ~~~~~~~~~~~~~~ 201 (434)
T PRK11663 188 IVVGLFLCWRLRDK 201 (434)
T ss_pred HHHHHHHHHHcCCC
Confidence 66655555555654
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=121.26 Aligned_cols=356 Identities=15% Similarity=0.117 Sum_probs=201.3
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHh---H---HhHhhhhhHHHHh
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSM---A---LGAVFGSPVVGNL 94 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~---~---~~~l~g~~~~~r~ 94 (481)
.++ +.+..-|+.-+|.+.+....+++-|+.|++|-|...+++..+.++|..+-.++..- . .-.. ..+..
T Consensus 74 ~Yg-s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~----~~Gq~ 148 (480)
T KOG2563|consen 74 FYG-SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLT----HTGQS 148 (480)
T ss_pred Hhc-chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhh----HHhHH
Confidence 445 66667799999999999999999999999999999999999999999988776543 1 0022 34444
Q ss_pred hccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhh
Q psy7924 95 VDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIK 167 (481)
Q Consensus 95 ~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~ 167 (481)
+. +.+........+- +++|..+.....++. .+|..++..+.....-. .
T Consensus 149 ia--a~Aq~Fim~lPskiA~~WF~~~qra~A~~~~v~~n--------------------~LGvavg~llppilV~~---~ 203 (480)
T KOG2563|consen 149 IA--AAAQPFILGLPSKIAAVWFPPDQRAIATVLGVMGN--------------------PLGVAVGFLLPPILVPS---S 203 (480)
T ss_pred HH--HHhhhHhhccccHHHHhhCCcchhhhhhhHHHhcc--------------------hHHHHHHhhccceecCC---C
Confidence 44 4433332222111 788888877777766 66666665555211000 1
Q ss_pred ccchhhHHHH--HHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCc
Q psy7924 168 ERKFEASVYG--LSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDK 244 (481)
Q Consensus 168 ~~~~~~~w~~--~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (481)
+......|.. +|+....++.+.+.+.. ..+|.|+.-.. .+ ...+++..-.
T Consensus 204 ~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps-----~s----------------------~~~~~~~~f~ 256 (480)
T KOG2563|consen 204 KDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPS-----AS----------------------QAALQDASFP 256 (480)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCc-----hh----------------------HhhhhcCcHH
Confidence 1224455655 34433333333333322 23443311000 00 0000111123
Q ss_pred cchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCC-
Q psy7924 245 VPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGR- 322 (481)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~gr- 322 (481)
.+.++.++++++ ++.. +.+......++.....+...+...|++. .++.......+++++++.+.|.+.||.+.
T Consensus 257 ~si~~~~~n~~F----~il~-~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG~ig~l~iv~Gmlga~~~gii~Dktk~f 331 (480)
T KOG2563|consen 257 KSIKSCFKNRQF----IILA-ICYGIGLGLFNSLSTLLNLALCPSGYEGVFAGYIGALMIVAGMLGALASGIIADKTKKF 331 (480)
T ss_pred HHHHHHHcCccH----HHHH-HHHhhhHHHHHHHHHHhhhccccccCCccccchhHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence 456778888532 2222 2222222223333333332333445654 67888888899999999999999999876
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHH
Q psy7924 323 RILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLF 402 (481)
Q Consensus 323 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~ 402 (481)
|...++......++...+... ... ....+..... +.....+..+..|+..-+..|..-|..-++..|+.+..
T Consensus 332 k~~~~v~~~~~~v~~~~l~~~-t~~------~~~~viv~~t-~~~~g~~~~~~~Pig~ElgvE~TyPv~E~tSsGll~~~ 403 (480)
T KOG2563|consen 332 KLTTLVLYLFALVGTLMLLTC-TLF------LGDSVIVFTT-CGLLGFFGTGYLPIGFELGVETTYPVAEGTSSGLLNLS 403 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-hcc------CCceEehhhh-HHHHHHhhcCCCCcceeeeeeeccccCCcccceeEEee
Confidence 445555555555553222111 110 1122222222 22333445556667666666764334457888999999
Q ss_pred HHHHHHHHHhHHHHHHHhhc----CChhHHHHHHHHHHHHHHHHHhcc
Q psy7924 403 NWVSVLVVTKFFGDVTLLLG----GHGAFWIFSVIAALGAVFTYILVP 446 (481)
Q Consensus 403 ~~~g~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
+++.+.+-..+.+...+..+ +...-+.....+.+..++..++.|
T Consensus 404 gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~ 451 (480)
T KOG2563|consen 404 GQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRP 451 (480)
T ss_pred hhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhh
Confidence 99999999999888887766 333333444444444444444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=133.40 Aligned_cols=163 Identities=18% Similarity=0.107 Sum_probs=125.6
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
......+.|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++..++.+.....
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 102 (398)
T TIGR00895 33 LAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA---------- 102 (398)
T ss_pred HHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc----------
Confidence 4455667788888888886 56777778888899999999999999999999999888888777666542
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
.+.+...+...+.+.+.+... +....++.|.+|++.|+++.++......+|..+++.+.+.+.+..||+..+.+.+.+
T Consensus 103 -~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~ 180 (398)
T TIGR00895 103 -TNVTQLLILRFLAGLGLGGLM-PNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIA 180 (398)
T ss_pred -cchHHHHHHHHHHhcccccch-hhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhH
Confidence 233334444444444433333 444588899999999999999999999999999999999999999999988887766
Q ss_pred HHHHHHHHHHhccCCC
Q psy7924 434 AALGAVFTYILVPETK 449 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~ 449 (481)
..+..++.....||+.
T Consensus 181 ~~~~~~~~~~~~~~~~ 196 (398)
T TIGR00895 181 PLLLLLLLMRFLPESI 196 (398)
T ss_pred HHHHHHHHHHhCCCCC
Confidence 6666666666677654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.6e-14 Score=133.49 Aligned_cols=163 Identities=18% Similarity=0.123 Sum_probs=129.2
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.......|.+.++.|.+. +.+.......+...++.++.|+++||+|||+.+..+.++..++.......
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 445556677888888887 66788888999999999999999999999999999888888877776652
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIA 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 434 (481)
.+.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|++.+.+.+++.
T Consensus 80 ~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 158 (399)
T TIGR00893 80 GAYVSLYILRVLLGAAEAPFF-PGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLG 158 (399)
T ss_pred cCHHHHHHHHHHHHHHHHhhh-hHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHH
Confidence 233445555555655544443 4445888999999999999999999999999999999999999999999998888777
Q ss_pred HHHHHHHHHhccCCCC
Q psy7924 435 ALGAVFTYILVPETKG 450 (481)
Q Consensus 435 ~~~~~~~~~~~~~~~~ 450 (481)
.+..++..+..||+++
T Consensus 159 ~~~~~~~~~~~~~~~~ 174 (399)
T TIGR00893 159 IIWGVLWLKFIPDPPQ 174 (399)
T ss_pred HHHHHHhhheecCCCC
Confidence 7766666555665543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.7e-13 Score=126.94 Aligned_cols=158 Identities=16% Similarity=0.144 Sum_probs=115.8
Q ss_pred hhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q psy7924 278 VVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356 (481)
Q Consensus 278 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
..+..+++.++.|.+. +.+.......+...+++++.|+++||+|||+.+..+.+...++.+.+.+. ++
T Consensus 27 ~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-----------~~ 95 (395)
T PRK10054 27 LPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV-----------NN 95 (395)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----------hH
Confidence 3444555666788887 66778888888899999999999999999999988888777777666542 22
Q ss_pred chhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHH
Q psy7924 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAAL 436 (481)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 436 (481)
.+..++...+.+...+ ...+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .+|+..|.+.+++.++
T Consensus 96 ~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~~f~~~~~~~~i 173 (395)
T PRK10054 96 VTLVVLFFALINCAYS-VFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINLPFWLAAICSAF 173 (395)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCcHHHHHHHHHHH
Confidence 2333333333333323 2334445777899999999999999999999999999999987765 6899999877777666
Q ss_pred HHHHHHHhccCC
Q psy7924 437 GAVFTYILVPET 448 (481)
Q Consensus 437 ~~~~~~~~~~~~ 448 (481)
..++..+..|++
T Consensus 174 ~~i~~~~~~~~~ 185 (395)
T PRK10054 174 PLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHhcc
Confidence 655555555544
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.5e-13 Score=118.01 Aligned_cols=386 Identities=13% Similarity=0.046 Sum_probs=213.8
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHH--HhHHhHhhhhhHHHHhhcc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGS--SMALGAVFGSPVVGNLVDT 97 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~g~~~~~r~~~~ 97 (481)
++++++++..-+.+.|..-.-...+++|+++|| .|+|+++..+.++..+|.++.+.++ +.. .+ .++-.+.
T Consensus 55 gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~--gl----~i~L~~I- 127 (498)
T COG3104 55 GLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPG--GL----YIGLALI- 127 (498)
T ss_pred cCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcccccccc--HH----HHHHHHH-
Confidence 356999999999999998888999999999999 5999999999999999999999885 455 55 6666777
Q ss_pred ccccceeeeeeccc---------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhc
Q psy7924 98 VGRKNTMLLLAVPS---------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKE 168 (481)
Q Consensus 98 ~G~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~ 168 (481)
++|.|..=+.... +.+|-...+...++. ++|.++++.+. +.
T Consensus 128 -~iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~i--------------------NiGsl~~p~i~---------~~ 177 (498)
T COG3104 128 -IVGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGI--------------------NIGSLIAPIIT---------GL 177 (498)
T ss_pred -HhccccccccHHHHHHHhcCCCCcccCCCccEEEEEe--------------------ehHHHHHHHHH---------HH
Confidence 7777765544433 333555566666666 88988888887 44
Q ss_pred cchhhHHHHHHHHhhHHHHHHHHHHhccCC----C-----hhHHhhcCcHHHHHHHHHHHhCCC---ccchHHHHHHHHh
Q psy7924 169 RKFEASVYGLSIICALLPIFFVGLMLLMPE----S-----PQFHLKKNRVKQAKESLQWFRGSE---YDIDSEITDMQNS 236 (481)
Q Consensus 169 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~e----s-----p~~l~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~~~ 236 (481)
.....+|+..|...++-....++..+..+. + |.-+..+............+.... ....+........
T Consensus 178 ~~~~~g~~~gF~~aavGm~~gl~~f~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 257 (498)
T COG3104 178 LAINYGWHVGFGLAAVGMIIGLVIFLLGRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAALLTLLLNQNTFSGVLLV 257 (498)
T ss_pred HHHhhCHHHHHHHHHHHHHHHHHHHHHccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447778999998888776665555443321 1 111100000000000000000000 0000000000000
Q ss_pred hhhhccCccchHHHhcCcc---hhhhHHHHHHH------HHHHHhhhhhhhhHhhHHHhhh--cCCCCchhHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPA---AKRGLLIGLGV------MFIQQFGGINAVVFYTVKIFKD--AGSSLNPNLCTIIVGTI 305 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~ 305 (481)
... .....-+.+.+++++ .+++++..+.+ .....--..+....|.....++ .|++.......+...+.
T Consensus 258 ~~i-~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~~~~g~~vp~~~fQslNp~~ 336 (498)
T COG3104 258 ISI-LIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNRQIFGFEVPPAWFQSLNPFF 336 (498)
T ss_pred HHH-HHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcccccceecCHHHHHhhCHHH
Confidence 000 000000011111110 11222221111 1111111122333333322222 33444566777777777
Q ss_pred HHHHHHHHHHHHHHhCCh-------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCch
Q psy7924 306 MMVTTWIATMIVDRLGRR-------ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPI 378 (481)
Q Consensus 306 ~~~~~~~~g~l~d~~grr-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (481)
-++.+++..++..|.+++ .-+-++..+++.+.+.+.........+ +...+.++.+....+.. ..-....|+
T Consensus 337 Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~-~~~~s~~~lil~y~l~s-~gEL~iSpv 414 (498)
T COG3104 337 IILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP-SGLVSVWWLVLSYVLQS-FGELFISPV 414 (498)
T ss_pred HHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC-CCCcCHHHHHHHHHHHH-HHHHHhCHH
Confidence 778887777877775443 123455555555555554431111110 11223344444444443 334556677
Q ss_pred hhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHH------HHHhhcCChhHHHHHHHHHHHHHHHHHhcc
Q psy7924 379 PWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD------VTLLLGGHGAFWIFSVIAALGAVFTYILVP 446 (481)
Q Consensus 379 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~------~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
...++....|++..+..+++.......+..++..+.+. ..+.......|+.++....+..++.....|
T Consensus 415 GLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 415 GLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFGTIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHhhH
Confidence 77888899999999999998888877777777766652 333344556777777777777766655444
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=126.46 Aligned_cols=157 Identities=15% Similarity=0.050 Sum_probs=122.5
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (481)
...|.+.+++|.+. +.+.......+...++.++.|++.||+|||+++..+..+.+++.+...+. ++.+
T Consensus 30 ~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~ 98 (390)
T PRK03545 30 GLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA-----------WNFT 98 (390)
T ss_pred cchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-----------ccHH
Confidence 34677888888887 56777778888888999999999999999999999998888887776652 3334
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy7924 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 438 (481)
...+...+.+.+.+. ..+....++.|.+|+++|+++.|+......++..++|++.+.+.+..||++.|++.++++++..
T Consensus 99 ~l~~~r~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~ 177 (390)
T PRK03545 99 VLLISRIGIAFAHAI-FWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITL 177 (390)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHH
Confidence 444444444444332 2334447788999999999999999999999999999999998898999999999888877776
Q ss_pred HHHHHhccCC
Q psy7924 439 VFTYILVPET 448 (481)
Q Consensus 439 ~~~~~~~~~~ 448 (481)
+......||.
T Consensus 178 ~~~~~~~~~~ 187 (390)
T PRK03545 178 LLLIKLLPLL 187 (390)
T ss_pred HHHHHhCCCC
Confidence 6665556654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-13 Score=131.59 Aligned_cols=161 Identities=16% Similarity=0.123 Sum_probs=119.2
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
..+....|.+..+.+.+. +.++......++.+++.+++|+++||+|||+.++.+.++.+++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445566777878888877 55677888889999999999999999999999999888888777766552
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-------------
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL------------- 421 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~------------- 421 (481)
++.+.+++..++.+++.+... +...+++.|.+|++.|+...++.+....+|.++++.+...+....
T Consensus 253 ~s~~~llv~R~l~G~g~g~~~-p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~ 331 (742)
T TIGR01299 253 QGYGFFLFCRLLSGFGIGGAI-PIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFH 331 (742)
T ss_pred hhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccc
Confidence 233445555555555555444 555689999999999999999999999999999988776665543
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 422 GGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 422 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
+|++.+.+.++ ..+..++..+++||+.
T Consensus 332 gWR~l~~i~~l-p~ll~ll~~~~lPESP 358 (742)
T TIGR01299 332 SWRVFVIVCAF-PCVFAIGALTFMPESP 358 (742)
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHcCCCH
Confidence 35555554444 4444455566788873
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=127.10 Aligned_cols=164 Identities=23% Similarity=0.171 Sum_probs=126.1
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 21 ~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 90 (385)
T TIGR00710 21 IDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS---------- 90 (385)
T ss_pred HHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444445677888888887 66778888889999999999999999999999999888888877776552
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
++.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+++
T Consensus 91 -~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 168 (385)
T TIGR00710 91 -NNIETLLVLRFVQAFGASAGS-VISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168 (385)
T ss_pred -ccHHHHHHHHHHHHcchhHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 233334444444444433333 334478889999999999999999999999999999999999989999999888877
Q ss_pred HHHHHHHHHHhccCCCC
Q psy7924 434 AALGAVFTYILVPETKG 450 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~~ 450 (481)
..+..+...+..||+++
T Consensus 169 ~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 169 GILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHhCCCCCC
Confidence 77776666666676543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.6e-13 Score=118.58 Aligned_cols=160 Identities=18% Similarity=0.130 Sum_probs=139.6
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
-+...-..|.+.++++.+. .++...+.+..+..++.++...+.||+.||++++....++.++.++..+
T Consensus 29 Efv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al----------- 97 (394)
T COG2814 29 EFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL----------- 97 (394)
T ss_pred HHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3455567888999999998 7788999999999999999999999999999999999999999999887
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
.++.+..++.-.+.+...+..+ ++......++.|+++|++++++.+....+...++.++..++-|..|||.+|+..+++
T Consensus 98 Ap~f~~Ll~aR~~~g~a~G~f~-~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l 176 (394)
T COG2814 98 APSFAVLLLARALAGLAHGVFW-SIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVL 176 (394)
T ss_pred hccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHH
Confidence 4555666666666666555444 455688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc
Q psy7924 434 AALGAVFTYILVP 446 (481)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (481)
.++..+..+..+|
T Consensus 177 ~ll~~~~~~~~lP 189 (394)
T COG2814 177 ALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999888888
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.55 E-value=4e-13 Score=124.44 Aligned_cols=157 Identities=16% Similarity=0.163 Sum_probs=122.4
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (481)
...|.+.++.|.+. +.+.......+...++.++.|+++||+|||+.+..+.++.+++.+.... .++.+
T Consensus 41 ~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~-----------~~~~~ 109 (394)
T PRK10213 41 SLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSF-----------ANSFS 109 (394)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHH-----------HChHH
Confidence 34566778888887 5677777888889999999999999999999999999999887777655 23344
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy7924 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 438 (481)
...+...+.+.+.+... +....++.|.+|+++|+++.++.....+++..++|.+.+.+.+..||++.|.+.+.++++..
T Consensus 110 ~l~~~r~l~G~~~g~~~-~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~ 188 (394)
T PRK10213 110 LLLIGRACLGLALGGFW-AMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCI 188 (394)
T ss_pred HHHHHHHHHHHhhHHHH-HHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 45555555555555433 44457888999999999999999999999999999999999999999999988776666555
Q ss_pred HHHHHhccCC
Q psy7924 439 VFTYILVPET 448 (481)
Q Consensus 439 ~~~~~~~~~~ 448 (481)
+......||+
T Consensus 189 l~~~~~~p~~ 198 (394)
T PRK10213 189 FWIIKSLPSL 198 (394)
T ss_pred HHHHHHCCCC
Confidence 4444445654
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=127.16 Aligned_cols=178 Identities=13% Similarity=0.147 Sum_probs=131.2
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy7924 261 LIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT 339 (481)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 339 (481)
+.+........-.+........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++..++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 334444444444445556667888888888876 5566777788888999999999999999999999988888877776
Q ss_pred HHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7924 340 MGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419 (481)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 419 (481)
.... ++.+.......+.+.+.+... +..+.++.|.+|+++|+++.++.+....++..++|.+.+.+.+
T Consensus 85 ~~~~-----------~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~ 152 (392)
T PRK10473 85 CSLA-----------ETSSLFLAGRFLQGIGAGCCY-VVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIML 152 (392)
T ss_pred HHHh-----------CcHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6542 222333333344444333222 3445788899999999999999999999999999999888888
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 420 LLGGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 420 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
..+|+..+.+.+++..+..++.....||+++
T Consensus 153 ~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 183 (392)
T PRK10473 153 KFPWQSLFYTMAAMGILVLLLSLFILKETRP 183 (392)
T ss_pred CcChHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 8899998988888877777776667777543
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-13 Score=127.11 Aligned_cols=163 Identities=14% Similarity=0.053 Sum_probs=123.5
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++..++.+....
T Consensus 31 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----------- 99 (406)
T PRK11551 31 LQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQ----------- 99 (406)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH-----------
Confidence 3444556677888888887 6677888888999999999999999999999999988877777665544
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
..+.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+..+|+..+.+.+++
T Consensus 100 ~~~~~~~~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (406)
T PRK11551 100 AWDFPSLLVARLLTGVGLGGAL-PNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVG 178 (406)
T ss_pred hccHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHH
Confidence 2233444444555555444433 344478889999999999999999999999999999888777888888888877766
Q ss_pred HHHHHHHHHHhccCCC
Q psy7924 434 AALGAVFTYILVPETK 449 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~ 449 (481)
.++..++...+.||++
T Consensus 179 ~~~~~~~~~~~l~~~~ 194 (406)
T PRK11551 179 PLLLVPLLMRWLPESR 194 (406)
T ss_pred HHHHHHHHHHhCCCCh
Confidence 6666555556667653
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.5e-13 Score=124.91 Aligned_cols=176 Identities=15% Similarity=0.110 Sum_probs=126.0
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy7924 261 LIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT 339 (481)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 339 (481)
+..+.+................|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++..++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~ 93 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLA 93 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 333334444444445556666778888888887 6677888888999999999999999999999999988888887776
Q ss_pred HHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7924 340 MGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419 (481)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 419 (481)
..+. ++.+.......+.+.+.+... +....++.|.+|+++|+++.++.+....+|..+++.+.+.+.+
T Consensus 94 ~~~~-----------~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~ 161 (405)
T TIGR00891 94 CGFA-----------PGYITMFIARLVIGIGMGGEY-GSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVP 161 (405)
T ss_pred HHHh-----------ccHHHHHHHHHHHHhhhhhhh-HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6552 233444444455555544433 3344788899999999999999999999999999999988887
Q ss_pred hhc--CChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 420 LLG--GHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 420 ~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
..+ |+..+.+.+.. .+..++.....||++
T Consensus 162 ~~~~~w~~~f~~~~~~-~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 162 VWGDGWRALFFISILP-IIFALWLRKNIPEAE 192 (405)
T ss_pred hcCccHHHHHHHHHHH-HHHHHHHHHhCCCCh
Confidence 766 77777654433 333334444556653
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=128.88 Aligned_cols=163 Identities=16% Similarity=0.163 Sum_probs=114.8
Q ss_pred hhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q psy7924 278 VVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356 (481)
Q Consensus 278 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
.....|++.++ |.+. +.+.......++..++.++.|+++||+|||+++..+.++.+++.+.+.+.... ..+
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~-------~~~ 119 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA-------TSS 119 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc-------ccc
Confidence 44566777776 8877 56778888889999999999999999999999999988888877766552100 112
Q ss_pred chhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHH-HHHHHhhcCChhHHHHHHHHH
Q psy7924 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFF-GDVTLLLGGHGAFWIFSVIAA 435 (481)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~ 435 (481)
.+...+...+.+.+.+....+.. ..+.|.+|+++|+++.++.+....+|+.+.+++. .......+|+..|++.+++.+
T Consensus 120 ~~~~~~~~~l~gi~~g~~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~ 198 (452)
T PRK11273 120 IAVMFVLLFLCGWFQGMGWPPCG-RTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAI 198 (452)
T ss_pred HHHHHHHHHHHHHHHhccchHHH-HHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 22333444445555444444343 5667899999999999999999888875544443 333334588888988887777
Q ss_pred HHHHHHHHhccCCC
Q psy7924 436 LGAVFTYILVPETK 449 (481)
Q Consensus 436 ~~~~~~~~~~~~~~ 449 (481)
+..++..+++||+.
T Consensus 199 ~~~~l~~~~~~~~~ 212 (452)
T PRK11273 199 LVALFAFAMMRDTP 212 (452)
T ss_pred HHHHHHHHHccCCH
Confidence 76666666777653
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.5e-14 Score=130.98 Aligned_cols=163 Identities=16% Similarity=0.204 Sum_probs=124.7
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|++.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence 3445556778888888887 66788888899999999999999999999999999998888888777653
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHh-HHHHHHHhhcCChhHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK-FFGDVTLLLGGHGAFWIFSV 432 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~-~~~~~~~~~g~~~~~~~~~~ 432 (481)
.+.+...+...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..++|. +.+.+.+..+|+..+.+.+.
T Consensus 81 -~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (379)
T TIGR00881 81 -TSLWVMAALWALNGIFQGMGW-PPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGI 158 (379)
T ss_pred -hhHHHHHHHHHHHHhhccccC-CchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 233444444444444444333 444578899999999999999999999999999994 55666677789988888887
Q ss_pred HHHHHHHHHHHhccCCC
Q psy7924 433 IAALGAVFTYILVPETK 449 (481)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (481)
+.++..++..+..||++
T Consensus 159 ~~~~~~~~~~~~~~~~~ 175 (379)
T TIGR00881 159 IAIIVSLICFLLLRDSP 175 (379)
T ss_pred HHHHHHHHHheeeCCCc
Confidence 77776666666666543
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.8e-13 Score=127.78 Aligned_cols=177 Identities=14% Similarity=0.092 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy7924 261 LIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT 339 (481)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~ 339 (481)
+....+..+......+......|.+.+++|.+. +.++....+.++...+.++.|+++||+|||+.+..+..+..++.+.
T Consensus 8 ~~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~ 87 (495)
T PRK14995 8 LVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLA 87 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 344444444444445666777888888888876 5677888888888899999999999999999999999999998888
Q ss_pred HHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccC-cccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q psy7924 340 MGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF-PSQIKGIAVSIACLFNWVSVLVVTKFFGDVT 418 (481)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 418 (481)
.+. .++.+..++...+.+.+.+... +.....+.+.+ |+++|+++.|+......+|..++|.+.+.+.
T Consensus 88 ~~~-----------a~~~~~li~~r~l~G~g~~~~~-~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~ 155 (495)
T PRK14995 88 AAF-----------SPTASWLIATRALLAIGAAMIV-PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILL 155 (495)
T ss_pred HHH-----------cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 766 3344555555555665554433 22224444554 7899999999999999999999999999999
Q ss_pred HhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 419 LLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 419 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
++.+|++.|++...++++..++..+..|+.+
T Consensus 156 ~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 156 EHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999888777777666666777643
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.3e-13 Score=126.13 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=113.4
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.+.....
T Consensus 52 ~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~---------- 121 (476)
T PLN00028 52 TFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV---------- 121 (476)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh----------
Confidence 3444556678888889886 55666667778888999999999999999999988888877776665552
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH---------hhcCC
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL---------LLGGH 424 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~---------~~g~~ 424 (481)
.+.+...+...+.+++.+. ..+. ..+++|.+|+++|+++.|+.+...++|..+++.+.+.+.. ..||+
T Consensus 122 -~s~~~l~~~r~l~G~~~~~-~~~~-~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr 198 (476)
T PLN00028 122 -SSATGFIAVRFFIGFSLAT-FVSC-QYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWR 198 (476)
T ss_pred -cCHHHHHHHHHHHHHHHHh-hHHH-HHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhH
Confidence 2223333333444443332 2233 3567899999999999999998888888887776654432 14899
Q ss_pred hhHHHHHHHHHHHHHHHHHhccC
Q psy7924 425 GAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
+.|.+.+++.++..++..++.++
T Consensus 199 ~~f~i~g~l~l~~~l~~~~~~~~ 221 (476)
T PLN00028 199 IAFFVPGLLHIIMGILVLTLGQD 221 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCc
Confidence 99998888887776666555433
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.2e-13 Score=129.64 Aligned_cols=170 Identities=19% Similarity=0.133 Sum_probs=132.1
Q ss_pred HHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7924 269 IQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLK 347 (481)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~ 347 (481)
+.............|.+.++.|.+. +.++......++..++.++.|+++||+|||+.+..+.++..++.+....
T Consensus 12 ~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~----- 86 (485)
T TIGR00711 12 FMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV----- 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC-----
Confidence 3333334556667888888888886 6678888899999999999999999999999999999888888877655
Q ss_pred CCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhH
Q psy7924 348 NSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAF 427 (481)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 427 (481)
.++.+...+...+.+.+.+. ..+....++.|.+|+++|+++.++......+|..++|.+.+.+.++.+|++.|
T Consensus 87 ------~~~~~~l~~~~~~~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f 159 (485)
T TIGR00711 87 ------APNLELMIIFRVIQGFGGGP-LIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIF 159 (485)
T ss_pred ------cCCHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehh
Confidence 22334444444444444333 33455588899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCC
Q psy7924 428 WIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
++.+.+.++..++..+..||+++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~ 182 (485)
T TIGR00711 160 LINVPIGIIVVVVAFFILPRDKP 182 (485)
T ss_pred hhhhHHHHHHHHHHHHHcCCccc
Confidence 88877777766666666666443
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.2e-14 Score=126.43 Aligned_cols=170 Identities=18% Similarity=0.156 Sum_probs=138.6
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
-+.+....+.+.+.++.++ ..+++.....+...+.++++|++.||++||+++.++..+..++.+..++
T Consensus 49 r~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~f----------- 117 (493)
T KOG1330|consen 49 RYTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGF----------- 117 (493)
T ss_pred hhhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHH-----------
Confidence 3444445566666778887 6788999999999999999999999999999999999999999888877
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSV 432 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~ 432 (481)
....|...+.-.+.+++-+. +.++...+++|.+|.++|++..++.+....+|+.+|-.....+.+..+ |++.|...++
T Consensus 118 s~~Fwq~~l~R~~vGiGeAs-~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~av 196 (493)
T KOG1330|consen 118 SNHFWQVLLCRGFVGIGEAS-YSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAV 196 (493)
T ss_pred HHHHHHHHHHHHHhccchhh-hcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehH
Confidence 33455666666666665544 455666899999999999999999999999999998888877777766 9999999999
Q ss_pred HHHHHHHHHHHhccCCCCCCHHHH
Q psy7924 433 IAALGAVFTYILVPETKGKTLDEI 456 (481)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~~~~ 456 (481)
+.++++++..++.+|..++..++.
T Consensus 197 l~vi~~~L~~~f~~eP~rga~~~~ 220 (493)
T KOG1330|consen 197 LGVIVGLLVFLFVREPERGARDEV 220 (493)
T ss_pred HHHHHHHHHHhhccCccccccccc
Confidence 999999998888888776544443
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.3e-12 Score=121.40 Aligned_cols=168 Identities=13% Similarity=0.119 Sum_probs=115.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHH
Q psy7924 258 RGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMAL 335 (481)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~ 335 (481)
+.+...+.......+..+....+.+.++.++.|++. +.+.....+.....++.+++|+++||+ |||+.+..+.++..+
T Consensus 9 ~~l~~l~~~~~~e~fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~l 88 (493)
T PRK15462 9 RAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAI 88 (493)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHH
Confidence 444444444444444433333444444455578887 556677777788889999999999999 999999999998888
Q ss_pred HHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc--chhhHHHHHHHHHHHHHHHHHhH
Q psy7924 336 STLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ--IKGIAVSIACLFNWVSVLVVTKF 413 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~~~~~~g~~~~~~~ 413 (481)
+.+.+... ............+...+.+... +...++++|.+|++ .|.++.++.+...++|+.++|.+
T Consensus 89 g~lll~~~----------~~~~~~~~l~l~li~iG~G~~~-~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l 157 (493)
T PRK15462 89 GHVVLGAS----------EIHPSFLYLSLAIIVCGYGLFK-SNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIA 157 (493)
T ss_pred HHHHHHHh----------hcchhHHHHHHHHHHHhccccc-ccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHH
Confidence 87655431 1111112222222323333322 33347889999986 69999999999999999999999
Q ss_pred HHHHHHhhcCChhHHHHHHHHHH
Q psy7924 414 FGDVTLLLGGHGAFWIFSVIAAL 436 (481)
Q Consensus 414 ~~~~~~~~g~~~~~~~~~~~~~~ 436 (481)
.+.+.+..||+..|.+.++...+
T Consensus 158 ~g~L~~~~Gw~~~F~iaaigm~l 180 (493)
T PRK15462 158 CGYAQEEYSWAMGFGLAAVGMIA 180 (493)
T ss_pred HHHHHhhhChHHHHHHHHHHHHH
Confidence 99999999999999876554433
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1e-12 Score=123.81 Aligned_cols=154 Identities=13% Similarity=0.062 Sum_probs=117.2
Q ss_pred HHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q psy7924 266 VMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYF 344 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 344 (481)
..............+..|.+.++.|.++ +.+.......++..++.++.|+++||+|||+.+..+.+..+++.+...+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~- 103 (426)
T PRK12307 25 LGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA- 103 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333344555666778888888887 56778888889999999999999999999999999999998888776652
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 345 YLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
++.+...+...+.+.+.+... +....++.|.+|+++|+++.++......+|..+++.+.+.+.+..+|+
T Consensus 104 ----------~~~~~l~~~r~l~G~g~g~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~ 172 (426)
T PRK12307 104 ----------SGVIMLTLSRFIVGMGMAGEY-ACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWR 172 (426)
T ss_pred ----------hHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHH
Confidence 233444444455554444333 334477889999999999999999999999999999988888888999
Q ss_pred hhHHHHH
Q psy7924 425 GAFWIFS 431 (481)
Q Consensus 425 ~~~~~~~ 431 (481)
..+.+..
T Consensus 173 ~~f~i~~ 179 (426)
T PRK12307 173 AAFFVGL 179 (426)
T ss_pred HHHHHHH
Confidence 8887643
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.1e-13 Score=122.23 Aligned_cols=161 Identities=13% Similarity=0.050 Sum_probs=125.9
Q ss_pred hhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy7924 277 AVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355 (481)
Q Consensus 277 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
......|.+.++.|.+. +.+.......++..++.++.|++.||+|||+.+..+..+.+++.+.... .+
T Consensus 21 ~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~-----------~~ 89 (382)
T PRK10091 21 GIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL-----------SS 89 (382)
T ss_pred HHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH-----------hC
Confidence 44456677888888887 5677888889999999999999999999999999999998888877765 23
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAA 435 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 435 (481)
+.+...+...+.+.+.+... +....++.|.+|+++|+++.++......++..++|++.+.+.+..+|++.|.+.+.+..
T Consensus 90 ~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~ 168 (382)
T PRK10091 90 SYLMLAIGRLVSGFPHGAFF-GVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNI 168 (382)
T ss_pred cHHHHHHHHHHHHhhhHHHH-HHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHH
Confidence 44445555555555444333 33346778999999999999999999999999999999988888899999998887777
Q ss_pred HHHHHHHHhccCCC
Q psy7924 436 LGAVFTYILVPETK 449 (481)
Q Consensus 436 ~~~~~~~~~~~~~~ 449 (481)
+..+......||.+
T Consensus 169 ~~~~~~~~~lp~~~ 182 (382)
T PRK10091 169 AVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHhCCCCC
Confidence 66665566677653
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=127.10 Aligned_cols=164 Identities=15% Similarity=0.136 Sum_probs=117.7
Q ss_pred hhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy7924 277 AVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355 (481)
Q Consensus 277 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
......|++.+ .|.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.+........ ..
T Consensus 45 ~~~~~~p~~~~-~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~-------~~ 116 (438)
T TIGR00712 45 NFALAMPYLVE-QGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA-------TS 116 (438)
T ss_pred cHHhhhHHHHH-cCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc-------cc
Confidence 34455676665 58877 56778888889999999999999999999999988888887777665442100 01
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH-hhcCChhHHHHHHHH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL-LLGGHGAFWIFSVIA 434 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~~~ 434 (481)
+.....+...+.+.+.+....+.. ..+.|.+|+++|+++.++.+....+++.+++.+.+...+ ..+|+..|++.++++
T Consensus 117 ~~~~l~~~~~l~g~~~g~~~~~~~-~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~ 195 (438)
T TIGR00712 117 SIAIMFVLLFLNGWFQGMGWPPCG-RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICA 195 (438)
T ss_pred hHHHHHHHHHHHHHHhhcchHHHH-HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 112223333444444444443343 677799999999999999999999999999888776554 468999998888887
Q ss_pred HHHHHHHHHhccCCC
Q psy7924 435 ALGAVFTYILVPETK 449 (481)
Q Consensus 435 ~~~~~~~~~~~~~~~ 449 (481)
++..++..++.||++
T Consensus 196 ~i~~~~~~~~~~~~~ 210 (438)
T TIGR00712 196 IIVALFAFAMMRDTP 210 (438)
T ss_pred HHHHHHHHHhccCCH
Confidence 777766666666643
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.5e-12 Score=121.29 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=121.6
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (481)
...|.+.++++.+. ........+.++..++.++.|+++||+|||+++..+..+..++.+.... .++.+
T Consensus 37 p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~-----------a~~~~ 105 (413)
T PRK15403 37 PGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF-----------TTSMT 105 (413)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-----------cCCHH
Confidence 33456667777776 5566777788889999999999999999999999998888887776655 23334
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHH
Q psy7924 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 438 (481)
..++...+.+.+.+. ..+..+.+..|.+|+++|+++.++.+....++..++|.+.+.+.+..||++.|++.+++.++..
T Consensus 106 ~l~~~r~l~Gi~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~ 184 (413)
T PRK15403 106 QFLIARFIQGTSICF-IATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAF 184 (413)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 445555555554432 2344457788999999999999999999999999999999888888899999998888777766
Q ss_pred HHHHHhccCCCC
Q psy7924 439 VFTYILVPETKG 450 (481)
Q Consensus 439 ~~~~~~~~~~~~ 450 (481)
+...+..||+++
T Consensus 185 ~~~~~~lp~~~~ 196 (413)
T PRK15403 185 VGLLLAMPETVK 196 (413)
T ss_pred HHHHHhCCCCcc
Confidence 655566787643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2e-12 Score=123.41 Aligned_cols=163 Identities=18% Similarity=0.135 Sum_probs=123.9
Q ss_pred hhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy7924 274 GINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 274 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (481)
.........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+..+..++.+....
T Consensus 25 ~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~---------- 94 (471)
T PRK10504 25 DTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCAL---------- 94 (471)
T ss_pred hHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH----------
Confidence 34455667888888888887 5566777777888999999999999999999999888777777665544
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHH
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSV 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 432 (481)
.++.+...+...+.+.+.+.. .+....++.|.+|+++|+++.++.+...+++..++|.+.+.+.+..||++.|.+...
T Consensus 95 -~~~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~ 172 (471)
T PRK10504 95 -SGTLNELLLARVLQGVGGAMM-VPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIP 172 (471)
T ss_pred -hCCHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHH
Confidence 223334444455555554443 344457788999999999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHHHHhccCC
Q psy7924 433 IAALGAVFTYILVPET 448 (481)
Q Consensus 433 ~~~~~~~~~~~~~~~~ 448 (481)
+..+..+......|+.
T Consensus 173 ~~~l~~~~~~~~~~~~ 188 (471)
T PRK10504 173 VGIIGAIATLMLMPNY 188 (471)
T ss_pred HHHHHHHHHHHhCCCc
Confidence 7666666665555543
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.1e-13 Score=122.05 Aligned_cols=162 Identities=20% Similarity=0.227 Sum_probs=123.3
Q ss_pred hhhhHhhH-HHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 276 NAVVFYTV-KIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 276 ~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
.......| .+.++.|.+. +.+.......+...++.++.|+++||+|||+.+..+.++.+++.+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~----------- 81 (352)
T PF07690_consen 13 SIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF----------- 81 (352)
T ss_dssp HHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-----------
Confidence 33444555 6777888887 7788888899999999999999999999999999999998888444443
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
.++.+..++...+.+.+.+... +....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+++.+++
T Consensus 82 ~~~~~~~~~~~~l~g~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~ 160 (352)
T PF07690_consen 82 ASNFWLLLIARFLLGIGSGFFS-PASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAIL 160 (352)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHH
T ss_pred hhhHHHHhhhcccccccccccc-ccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccch
Confidence 1223345555555555544444 444588899999999999999999999999999999999888888999999998888
Q ss_pred HHHHHHHHHHhccCCC
Q psy7924 434 AALGAVFTYILVPETK 449 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~ 449 (481)
.++..++...+.++++
T Consensus 161 ~~~~~il~~~~~~~~~ 176 (352)
T PF07690_consen 161 SLIAAILFILFLPEPP 176 (352)
T ss_dssp HHHHHHHHHCCC---S
T ss_pred hhhhhhhHhhhhhhcc
Confidence 8887775445554433
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=117.66 Aligned_cols=162 Identities=11% Similarity=0.035 Sum_probs=119.9
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
..+....|.+.++++.+. +.+.....+.++..++.+..|+++||+|||+++.........+.... .. .
T Consensus 8 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~-~~----------~ 76 (368)
T TIGR00903 8 VTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAGRL-LD----------P 76 (368)
T ss_pred HHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH-HH----------h
Confidence 344556788888888887 56778888888999999999999999999987665544443332211 10 1
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIA 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 434 (481)
.+.....+...+.+.+.+. . .......+|.+|+++|++++++.+....+|..+++.+.+.+.+..||+..|.+.+++.
T Consensus 77 ~~~~~l~~~R~l~G~g~~~-~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~ 154 (368)
T TIGR00903 77 FNYEWLLACQLLAALGQPF-L-LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVA 154 (368)
T ss_pred ccHHHHHHHHHHHHhHhHH-H-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 2233444445555544443 2 2233556899999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHhccCCCC
Q psy7924 435 ALGAVFTYILVPETKG 450 (481)
Q Consensus 435 ~~~~~~~~~~~~~~~~ 450 (481)
++..++.++.+||+++
T Consensus 155 ~~~~~~~~~~lp~~p~ 170 (368)
T TIGR00903 155 AAGIILVLAALPALPF 170 (368)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 8887777778887643
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.6e-12 Score=118.35 Aligned_cols=159 Identities=15% Similarity=0.094 Sum_probs=118.9
Q ss_pred hhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy7924 277 AVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355 (481)
Q Consensus 277 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
...+..+++.++.|.+. ..+.......+...+.+++.|+++||+|||+.+..+..+..++.+.... .+
T Consensus 29 ~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~-----------~~ 97 (400)
T PRK11646 29 VFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAI-----------AH 97 (400)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHH-----------hc
Confidence 33444455567778877 5677777778888888999999999999999999999988888877655 22
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAA 435 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 435 (481)
+.+...+...+.+.+.+.. .+...+++.|.+|+++|+++.|+.+...++|..++|.+.+.+. ..||+..|++.+.+.+
T Consensus 98 ~~~~l~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~~~~~~~ 175 (400)
T PRK11646 98 EPWLLWLSCILSGLGGTLF-DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCATGAVLFV 175 (400)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence 3344444444444443332 3333477889999999999999999999999999999999888 6789988888777766
Q ss_pred HHHHHHHHhccCC
Q psy7924 436 LGAVFTYILVPET 448 (481)
Q Consensus 436 ~~~~~~~~~~~~~ 448 (481)
+..++.....||.
T Consensus 176 ~~~i~~~~~~~~~ 188 (400)
T PRK11646 176 LAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHhCCcc
Confidence 6665555555653
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-12 Score=118.44 Aligned_cols=161 Identities=20% Similarity=0.174 Sum_probs=118.4
Q ss_pred hhhhhHhhHHHhhhcCCCC-ch-----hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcC
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NP-----NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKN 348 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~-----~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (481)
......+.|.+.++.|.+. +. +.......+...++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 30 ~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~----- 104 (408)
T PRK09874 30 FSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA----- 104 (408)
T ss_pred HHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-----
Confidence 3444556677777777775 32 456667778889999999999999999999998888777776665441
Q ss_pred CCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHH
Q psy7924 349 SGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFW 428 (481)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~ 428 (481)
++.+...+...+.+.+. +..+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+.
T Consensus 105 ------~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 176 (408)
T PRK09874 105 ------QNIWQFLILRALLGLLG--GFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFF 176 (408)
T ss_pred ------hhHHHHHHHHHHHHHhh--hhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 22333444444444332 2234444677789999999999999999999999999999999989899999998
Q ss_pred HHHHHHHHHHHHHHHhccCC
Q psy7924 429 IFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~~ 448 (481)
+.+.+.++..+...+..||+
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 177 ITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 88877777666666666654
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.8e-12 Score=122.40 Aligned_cols=158 Identities=14% Similarity=0.184 Sum_probs=114.9
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.....+.+.+.++.|.+. +.+.......+...++.++.|+++||+|||+.++.+.++..++.+..++.
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------- 104 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS----------- 104 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----------
Confidence 334556777888888876 55667777777778888999999999999999998888887777666552
Q ss_pred ccchhHHHHH-HHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 355 NIGWLPLGSL-CVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 355 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
++.+...... .+.+.+.+....+. ..++.+.+| ++|+++.|+.+....++..++|.+.+.+.+..||+++|.+.+++
T Consensus 105 ~~~~~l~~~~~~l~G~~~~~~~~~~-~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~ 182 (455)
T TIGR00892 105 SNVIELYLTAGFITGLGLAFNFQPS-LTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGL 182 (455)
T ss_pred hhHHHHHHHHHHHHHhcchhhhhHH-HHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHH
Confidence 2222222222 33333333333333 366678886 78999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHhcc
Q psy7924 434 AALGAVFTYILVP 446 (481)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (481)
.++..+..++..+
T Consensus 183 ~~~~~v~~~~~~~ 195 (455)
T TIGR00892 183 LLHCCVCGALMRP 195 (455)
T ss_pred HHHHHHHHHHhCC
Confidence 7766554444433
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.1e-12 Score=118.73 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=119.4
Q ss_pred hhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q psy7924 278 VVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356 (481)
Q Consensus 278 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
.....|.+.++++.+. ..+.......++..++.++.|+++||+|||+.+..+.....++.+..... ++
T Consensus 32 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-----------~~ 100 (406)
T PRK15402 32 IQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA-----------QS 100 (406)
T ss_pred HhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------cc
Confidence 3334556777888876 55667778888899999999999999999999998888888777766542 22
Q ss_pred chhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHH
Q psy7924 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAAL 436 (481)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 436 (481)
.+.......+.+.+.+.. .+.....+.|.+|++.|.+..++......++..++|.+.+.+.+..+|++.+++.+++.++
T Consensus 101 ~~~l~~~~~l~G~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~ 179 (406)
T PRK15402 101 IEQFTLLRFLQGIGLCFI-GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAAL 179 (406)
T ss_pred HHHHHHHHHHHHhHhhhH-HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHH
Confidence 233333333333333322 2344577789999999999999998888889999999999888888999999888887777
Q ss_pred HHHHHHHhccCCCC
Q psy7924 437 GAVFTYILVPETKG 450 (481)
Q Consensus 437 ~~~~~~~~~~~~~~ 450 (481)
..+..+...||+++
T Consensus 180 ~~~~~~~~~~~~~~ 193 (406)
T PRK15402 180 SFFGLWRAMPETAG 193 (406)
T ss_pred HHHHHHHhCCCCCc
Confidence 66666566676643
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-12 Score=117.90 Aligned_cols=162 Identities=18% Similarity=0.137 Sum_probs=119.6
Q ss_pred hhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy7924 277 AVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355 (481)
Q Consensus 277 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
......|.+.++.+.+. +.+.......+...++.++.|+++||+|||+.+..+.....++.+..... +
T Consensus 26 ~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~-----------~ 94 (394)
T PRK11652 26 IYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA-----------H 94 (394)
T ss_pred HHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------c
Confidence 33334677778888887 56778888889999999999999999999999998888887777665442 2
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAA 435 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 435 (481)
+.+...+...+.+.+.+.. .+....+..|.++.++++.+.+..+....++..++|.+.+.+.+..||+..+.+.++...
T Consensus 95 ~~~~l~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~ 173 (394)
T PRK11652 95 SLTVLIAASAIQGLGTGVG-GVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGA 173 (394)
T ss_pred cHHHHHHHHHHHHhhhhHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHH
Confidence 2233334344444433322 233446677889989999999999999999999999999988888899999988777766
Q ss_pred HHHHHHHHhccCCCC
Q psy7924 436 LGAVFTYILVPETKG 450 (481)
Q Consensus 436 ~~~~~~~~~~~~~~~ 450 (481)
+..+...+..||+++
T Consensus 174 ~~~~~~~~~~~~~~~ 188 (394)
T PRK11652 174 GVTFSMARWMPETRP 188 (394)
T ss_pred HHHHHHHHhCCccCc
Confidence 665555566677543
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.7e-12 Score=117.11 Aligned_cols=155 Identities=8% Similarity=0.046 Sum_probs=116.8
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.+.+. +.+.......++..++.++.|++.||+|||+.+..+.++..++.+...+
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~----------- 91 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMF----------- 91 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 4455566778888888887 5677777888899999999999999999999999888888887776655
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH-hhcCChhHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL-LLGGHGAFWIFSV 432 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~ 432 (481)
.++.+...+...+.+.+.+...... ..++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+ ..+|++.|.+.++
T Consensus 92 ~~~~~~~~~~~~l~G~~~g~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~ 170 (394)
T PRK03699 92 SHSLALFSIAMFVLGVVSGITMSIG-TFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGL 170 (394)
T ss_pred cchHHHHHHHHHHHHHhhHhhccch-hHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 2233444444455555555444333 4777899999999999999888888999999998887765 4689999987777
Q ss_pred HHHHHHHHH
Q psy7924 433 IAALGAVFT 441 (481)
Q Consensus 433 ~~~~~~~~~ 441 (481)
+.++..++.
T Consensus 171 ~~~~~~~~~ 179 (394)
T PRK03699 171 VYVAIFILT 179 (394)
T ss_pred HHHHHHHHH
Confidence 666554433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.6e-12 Score=115.83 Aligned_cols=162 Identities=20% Similarity=0.115 Sum_probs=115.3
Q ss_pred hhhhhHhhH-HHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy7924 275 INAVVFYTV-KIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 275 ~~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (481)
......+.| ++.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++..++.+.....
T Consensus 17 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~--------- 87 (366)
T TIGR00886 17 WFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA--------- 87 (366)
T ss_pred HHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 455556667 4778889987 66788888899999999999999999999999999999888888777652
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh----------hc
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL----------LG 422 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~----------~g 422 (481)
..+.+...+...+.+.+. ....+ ...++.|.+|+++|+++.++.....++|..+++.+.+.+.+. .+
T Consensus 88 -~~~~~~~~~~~~~~g~~~-~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~ 164 (366)
T TIGR00886 88 -VQSYSVLLLLRLFIGIAG-GSFAS-CMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLA 164 (366)
T ss_pred -hhhHHHHHHHHHHHHHhc-hhhHh-HHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 103333444444444432 22333 347788999999999999999988888888888777666542 37
Q ss_pred CChhH-HHHHHHHHHHHHHHHHhccCC
Q psy7924 423 GHGAF-WIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 423 ~~~~~-~~~~~~~~~~~~~~~~~~~~~ 448 (481)
|++.+ ...+.+..+..++.....+|+
T Consensus 165 w~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (366)
T TIGR00886 165 WGWAFVIVPAGILLLPALLIFFVGADT 191 (366)
T ss_pred ccchhHHHHHHHHHHHHHHHHHhcccC
Confidence 88888 444555555444444455544
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-12 Score=120.06 Aligned_cols=150 Identities=13% Similarity=0.106 Sum_probs=110.9
Q ss_pred hhhhHhhHHH-hhh--cCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy7924 276 NAVVFYTVKI-FKD--AGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMGYYFYLKNSG 350 (481)
Q Consensus 276 ~~~~~~~~~~-~~~--~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (481)
+....+.|.+ .++ .|.+. +.+.......+...++.+++|+++|| +|||+.+..+.++.+++.+.+.+.
T Consensus 27 ~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~~------- 99 (475)
T TIGR00924 27 YGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMS------- 99 (475)
T ss_pred HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhc-------
Confidence 3334444444 444 67776 66778888889999999999999999 899999999999998888777652
Q ss_pred CCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc---hhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhH
Q psy7924 351 SDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI---KGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAF 427 (481)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~---r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ 427 (481)
++.+...+...+.+.+.+.. .+...++++|.+|+++ |+++.++.+...++|..++|.+.+.+.+..||+..|
T Consensus 100 ----~~~~~~~~~~~l~g~g~g~~-~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f 174 (475)
T TIGR00924 100 ----IYPDLIFYGLGTIAVGSGLF-KANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGF 174 (475)
T ss_pred ----ccHhHHHHHHHHHHhccccc-cCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 22233333334444443333 3344478889998754 888999999999999999999999999988999998
Q ss_pred HHHHHHHHHH
Q psy7924 428 WIFSVIAALG 437 (481)
Q Consensus 428 ~~~~~~~~~~ 437 (481)
.+.++..++.
T Consensus 175 ~~~~~~~~~~ 184 (475)
T TIGR00924 175 NLAAVGMVIG 184 (475)
T ss_pred HHHHHHHHHH
Confidence 8776544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.9e-12 Score=119.39 Aligned_cols=158 Identities=16% Similarity=0.102 Sum_probs=116.2
Q ss_pred hhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy7924 277 AVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355 (481)
Q Consensus 277 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
......|.+..+.+.+. +.+.......+...++.++.|+++||+|||+.+..+..+..++........... ..
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~------~~ 90 (365)
T TIGR00900 17 ITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLG------GL 90 (365)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcC------CC
Confidence 33444555666666665 567788888899999999999999999999999988888777766665532111 11
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAA 435 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 435 (481)
+.+...+...+.+.+.+... +...+++.|.+|+++|++..++.+....+|..++|.+.+.+.+..+|+..+.+.++..+
T Consensus 91 ~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~ 169 (365)
T TIGR00900 91 NIWQVYVLAGILAIAQAFFT-PAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFA 169 (365)
T ss_pred cHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444555555544433 44458889999999999999999999999999999999999999999988877666555
Q ss_pred HHHHHH
Q psy7924 436 LGAVFT 441 (481)
Q Consensus 436 ~~~~~~ 441 (481)
+..+..
T Consensus 170 ~~~~~~ 175 (365)
T TIGR00900 170 ISALLI 175 (365)
T ss_pred HHHHHH
Confidence 544433
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-12 Score=122.41 Aligned_cols=153 Identities=14% Similarity=0.144 Sum_probs=115.8
Q ss_pred HHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHH
Q psy7924 266 VMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYF 344 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~ 344 (481)
+..+.............|.+.+++|.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.+...+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 105 (496)
T PRK03893 27 LGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333344555666788888888887 55677777888899999999999999999999999988888887776652
Q ss_pred hhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 345 YLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 345 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
.+.+...+...+.+++.+... +....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+
T Consensus 106 ----------~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~ 174 (496)
T PRK03893 106 ----------PGYWTLFIARLVIGMGMAGEY-GSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWR 174 (496)
T ss_pred ----------hHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHH
Confidence 233344444444444433333 334477889999999999999999999999999999999999988998
Q ss_pred hhHHHH
Q psy7924 425 GAFWIF 430 (481)
Q Consensus 425 ~~~~~~ 430 (481)
+.|.+.
T Consensus 175 ~~f~~~ 180 (496)
T PRK03893 175 ALFFIG 180 (496)
T ss_pred HHHHHH
Confidence 887653
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-11 Score=118.35 Aligned_cols=147 Identities=14% Similarity=0.026 Sum_probs=103.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhcc
Q psy7924 296 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375 (481)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
+.......++..++.++.++++||+|||+.+..+.++..++.++..... +.. +.......++...+.+++.+...
T Consensus 59 ~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~---~~~--~~~~~~~~~~~r~l~G~~~g~~~ 133 (502)
T TIGR00887 59 AAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP---GSS--PKSVMATLCFWRFWLGVGIGGDY 133 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc---Ccc--cchHHHHHHHHHHHHHHHHhhhh
Confidence 4677778888999999999999999999999998888888777665421 000 00012344455555555555444
Q ss_pred CchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH-----------------------hhcCChhHHHHHH
Q psy7924 376 GPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL-----------------------LLGGHGAFWIFSV 432 (481)
Q Consensus 376 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~-----------------------~~g~~~~~~~~~~ 432 (481)
... ..++.|.+|++.|+++.++.+....+|..+++.+...+.. ..+|+..+.+.++
T Consensus 134 ~~~-~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~i 212 (502)
T TIGR00887 134 PLS-AIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAV 212 (502)
T ss_pred HHH-HHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHH
Confidence 444 5899999999999999999999999999888887654432 1368877755444
Q ss_pred HHHHHHHHHHHhccCCC
Q psy7924 433 IAALGAVFTYILVPETK 449 (481)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (481)
..+...+..+++||+.
T Consensus 213 -p~~i~~~~~~~lpESp 228 (502)
T TIGR00887 213 -PALLALYFRLTIPETP 228 (502)
T ss_pred -HHHHHHHHHHhCCCCH
Confidence 3344444556789873
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.7e-12 Score=117.65 Aligned_cols=175 Identities=14% Similarity=0.105 Sum_probs=122.5
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHH
Q psy7924 258 RGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMAL 335 (481)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~ 335 (481)
+.++..+.......+..+....+...++.++.|.+. +.......+.....+..+++|+++|| +|||+.+..+.++..+
T Consensus 14 ~~~~~~~~~~~~er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~ 93 (489)
T PRK10207 14 RPFFMIFFVELWERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAI 93 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHH
Confidence 445555555555556555555566666667788876 45556666666677777899999999 9999999999999999
Q ss_pred HHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc--hhhHHHHHHHHHHHHHHHHHhH
Q psy7924 336 STLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI--KGIAVSIACLFNWVSVLVVTKF 413 (481)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~g~~~~~~~ 413 (481)
+.+.+.+. ........+...+.+.+.+...+.. .+++.|.+|+++ |+.+.++.+...++|..++|.+
T Consensus 94 g~~~~~~~----------~~~~~ll~~~~~l~~ig~g~~~~~~-~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l 162 (489)
T PRK10207 94 GYFMTGMS----------LLKPDLIFIALGTIAVGNGLFKANP-ASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSL 162 (489)
T ss_pred HHHHHHHh----------ccchhHHHHHHHHHHhccccccCCH-HHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHH
Confidence 88887652 1111222233444444434333334 488899998874 5778999999999999999999
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 414 FGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 414 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
.+.+.++.||++.|++.++ ..+..++.+..
T Consensus 163 ~g~l~~~~gw~~~F~i~~i-~~~~~~~~~~~ 192 (489)
T PRK10207 163 APVIADKFGYSVTYNLCGA-GLIIALLVYFA 192 (489)
T ss_pred HHHHHHhhChHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999887544 33433433333
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.2e-12 Score=122.81 Aligned_cols=150 Identities=6% Similarity=-0.016 Sum_probs=112.4
Q ss_pred cCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHH
Q psy7924 289 AGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVF 367 (481)
Q Consensus 289 ~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
.+.+. +.+.....+.++..++.++.|+++||+|||+.+..+.++..++.++..... ....+..++...+.
T Consensus 71 ~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~---------~~~~~~l~~~r~~~ 141 (465)
T TIGR00894 71 FKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA---------GGGIALVVFCRVIQ 141 (465)
T ss_pred CCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH---------HcCchHHHHHHHHH
Confidence 44554 446677888889999999999999999999999988888777766653321 11223334444444
Q ss_pred HHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-cCChhHHHHHHHHHHHHHHHHHhcc
Q psy7924 368 IIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL-GGHGAFWIFSVIAALGAVFTYILVP 446 (481)
Q Consensus 368 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
+.+.+.. .+....+++|.+|+++|+++.++.+....+|..+++.+.+.+.+.. +|+..|.+.+++.++..++.+...+
T Consensus 142 G~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~ 220 (465)
T TIGR00894 142 GLAQGSV-SPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPA 220 (465)
T ss_pred HHhcccc-hhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhc
Confidence 4444433 3444578899999999999999999999999999999999998884 9999999888877777666655555
Q ss_pred CC
Q psy7924 447 ET 448 (481)
Q Consensus 447 ~~ 448 (481)
|+
T Consensus 221 ~~ 222 (465)
T TIGR00894 221 DD 222 (465)
T ss_pred CC
Confidence 43
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.7e-12 Score=117.99 Aligned_cols=159 Identities=16% Similarity=0.188 Sum_probs=123.3
Q ss_pred hHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q psy7924 279 VFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIG 357 (481)
Q Consensus 279 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (481)
....|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++..++....... ++.
T Consensus 11 ~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~-----------~~~ 79 (377)
T PRK11102 11 LPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA-----------QTI 79 (377)
T ss_pred hccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------ccH
Confidence 345566777788886 56778888889999999999999999999999999998888887777552 223
Q ss_pred hhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 358 WLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
+.......+.+.+.+... +....++.|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+.+..+.
T Consensus 80 ~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 158 (377)
T PRK11102 80 DQLIYMRFLHGLAAAAAS-VVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILA 158 (377)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH
Confidence 334444444444443333 3344788899999999999999999999999999999999999889999988888777777
Q ss_pred HHHHHHhccCCC
Q psy7924 438 AVFTYILVPETK 449 (481)
Q Consensus 438 ~~~~~~~~~~~~ 449 (481)
.++..+..||++
T Consensus 159 ~~~~~~~~~~~~ 170 (377)
T PRK11102 159 AALVFFFIPETL 170 (377)
T ss_pred HHHHHHhCCccC
Confidence 666666667653
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-11 Score=116.55 Aligned_cols=174 Identities=13% Similarity=0.114 Sum_probs=113.7
Q ss_pred HHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH-hCChHHH
Q psy7924 249 QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR-LGRRILL 326 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~ 326 (481)
+.+++| +.++..+....+..+..+....+...++.++.|.+. +................+++|+++|| +|||+.+
T Consensus 15 ~~~~~p---~~~~~~~~~~~~~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~ 91 (500)
T PRK09584 15 NAFKQP---KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVI 91 (500)
T ss_pred hhhcCC---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 445654 334444444444444444444555556667788876 34444444444445555789999999 5999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc--hhhHHHHHHHHHH
Q psy7924 327 LVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI--KGIAVSIACLFNW 404 (481)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~ 404 (481)
..+.++..++...+.+. .+......+...+.+.+.+... +....+..|.+|++. |..+.++.+...+
T Consensus 92 ~~g~~~~~ig~~l~~~~----------~~~~~~l~~~~~l~gig~g~~~-~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~ 160 (500)
T PRK09584 92 MLGAIVLAIGYALVAWS----------GHDAGIVYMGMATIAVGNGLFK-ANPSSLLSTCYEKDDPRLDGAFTMYYMSIN 160 (500)
T ss_pred HHHHHHHHHHHHHHHHh----------cccHHHHHHHHHHHHHhhhccc-CCHHHHHHHhcCCCchhhhhcchHHHHHHH
Confidence 99998888887666542 1122223333344444444333 344478889998653 4567888899999
Q ss_pred HHHHHHHhHHHHHHHhhcCChhHHHHHHHHHH
Q psy7924 405 VSVLVVTKFFGDVTLLLGGHGAFWIFSVIAAL 436 (481)
Q Consensus 405 ~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 436 (481)
+|..++|.+.+.+.+..||+..|.+.++...+
T Consensus 161 iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i 192 (500)
T PRK09584 161 IGSFFSMLATPWLAAKYGWSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999999999999999999999876654443
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-12 Score=121.50 Aligned_cols=159 Identities=13% Similarity=0.117 Sum_probs=120.6
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
+......|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+..+.+++.+.....
T Consensus 20 ~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~----------- 88 (377)
T TIGR00890 20 YTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA----------- 88 (377)
T ss_pred hhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH-----------
Confidence 445567888888888887 66788888999999999999999999999999999998888888776652
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIA 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 434 (481)
++.+...+...+.+.+.+....... ....|.+| ++|+++.++......+|..+++++.+.+.+..+|++.|.+.+++.
T Consensus 89 ~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 166 (377)
T TIGR00890 89 DSLAALYLTYGLASAGVGIAYGIAL-NTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIF 166 (377)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHhHH-HHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 2333444444444444443333333 55667777 579999999999988998888888787888889999998888887
Q ss_pred HHHHHHHHHhccC
Q psy7924 435 ALGAVFTYILVPE 447 (481)
Q Consensus 435 ~~~~~~~~~~~~~ 447 (481)
++..+..+++.++
T Consensus 167 ~~~~~~~~~~~~~ 179 (377)
T TIGR00890 167 LLVIVLGAFLIGY 179 (377)
T ss_pred HHHHHHHHHheec
Confidence 7777666666554
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.8e-12 Score=121.82 Aligned_cols=177 Identities=11% Similarity=-0.034 Sum_probs=124.5
Q ss_pred HHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q psy7924 264 LGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY 342 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 342 (481)
+.+.+......-.......|.+.+++|.+. +.+.....+.++..++.++.|+++||+|||+++..+.++.++..+..+.
T Consensus 34 ~~~~~~~~y~~r~~~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~ 113 (467)
T PRK09556 34 VFIGYLTMYLIRKNFKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA 113 (467)
T ss_pred HHHHHHHHHHHhcChhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence 333333333333444455778888888887 6677888888999999999999999999999998888887777666654
Q ss_pred HHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-
Q psy7924 343 YFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL- 421 (481)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~- 421 (481)
..... .++.+...+...+.+.+.+.... ....+++|.+|+++|+++.|+......+|.++++.+.....+..
T Consensus 114 ~~~~~------~~~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~ 186 (467)
T PRK09556 114 SLGSG------SVSLGLMIALWALSGFFQSTGGP-CSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFF 186 (467)
T ss_pred HHhcc------cchHHHHHHHHHHHHHHHhccch-HHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhc
Confidence 21110 12334444455555555555544 44478899999999999999999999999999988877666543
Q ss_pred --cCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 422 --GGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 422 --g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
+|+..|.+.+.+.++.+++.+++.++
T Consensus 187 ~~~~~~~f~~~g~~~~~~~i~~~~~~~~ 214 (467)
T PRK09556 187 DGHVIGMFIFPSIIALIIGFIGLRYGSD 214 (467)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhCCC
Confidence 57777777677766666665555544
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.3e-11 Score=116.56 Aligned_cols=158 Identities=20% Similarity=0.066 Sum_probs=106.7
Q ss_pred CCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc-ccchhHHHHHHHH
Q psy7924 290 GSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS-NIGWLPLGSLCVF 367 (481)
Q Consensus 290 g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 367 (481)
+.+. ..+.......++..++.++.|+++||+|||+++..+..+..++.+..............++ ......++..++.
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~ 130 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIG 130 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHH
Confidence 4454 4567788888999999999999999999999999998888877766554211000000001 1112233444555
Q ss_pred HHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH--------HhhcCChhHHHHHHHHHHHHH
Q psy7924 368 IIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT--------LLLGGHGAFWIFSVIAALGAV 439 (481)
Q Consensus 368 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~~~~ 439 (481)
+++.+... +...++++|.+|+++|+++.++......+|..+++.+...+. +..||++.|.+.++..++..+
T Consensus 131 G~~~g~~~-~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~ 209 (479)
T PRK10077 131 GIGVGLAS-MLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLM 209 (479)
T ss_pred hhhHhHHh-hHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHH
Confidence 55544444 444588999999999999999999888888888776544332 346899998877666665543
Q ss_pred HHHHhccCCC
Q psy7924 440 FTYILVPETK 449 (481)
Q Consensus 440 ~~~~~~~~~~ 449 (481)
..+++||+.
T Consensus 210 -~~~~l~~s~ 218 (479)
T PRK10077 210 -LLYFVPETP 218 (479)
T ss_pred -HHHcCCCCc
Confidence 445678764
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=4e-12 Score=118.15 Aligned_cols=348 Identities=16% Similarity=0.124 Sum_probs=183.5
Q ss_pred ccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccc-----cchhhhhhhhhhHHHHhHHHHHHHH----h
Q psy7924 10 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTV-----GRKNTMLLLAVPTVTESDLSFIGSS----M 80 (481)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-----Grr~~~~~~~~~~~~~~~~~~~~~~----~ 80 (481)
+..|.+++ ++|++++|.+...+...+...+- ++.|.++|-+ .||+-++++.++..++.+..+..+. .
T Consensus 11 ~~~~~l~~---~l~ls~~~~~~~~~~~~lPw~~K-p~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~~~~s~ 86 (433)
T PF03092_consen 11 AIYPFLKD---DLGLSPAQLQRLSSLASLPWSIK-PLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPASESSA 86 (433)
T ss_pred HHHHHHHH---HcCCCHHHHHHHHHHHhCchHHh-hhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhcccccchh
Confidence 34566777 99999999999999999988765 7889999976 3666677777777666665555433 2
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc---------cccccchhhhhhHHHHHHHhhhccccccccccccccchhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS---------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAIL 151 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 151 (481)
. .. .+.-++. .++....-...-. ++.||...+...... .+|.+
T Consensus 87 ~--~~----~~~l~la--~~g~a~~DV~aDa~vvE~~~~~p~~~g~lqS~~~~~~--------------------~~G~l 138 (433)
T PF03092_consen 87 A--IA----VVLLFLA--SFGYAFADVAADALVVELARREPESRGDLQSFVWGVR--------------------SVGSL 138 (433)
T ss_pred h--hH----HHHHHHH--HHHHHHHHHhhhHHHHHHhhcCCchhHHHHHHHHHHH--------------------HHHHH
Confidence 2 22 3333444 3333222222211 333455444444444 67777
Q ss_pred hhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhcc-CCChhHHhhcCcHHHHHHHHHHHhCCCccchHHH
Q psy7924 152 CPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLM-PESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEI 230 (481)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~ 230 (481)
++..++ +......++|..|.+.+....+..+..+++ +|.++ .+.++... . ..+ +.
T Consensus 139 v~~~l~---------G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~-----~~~~~~~~----~-----~~~-~~ 194 (433)
T PF03092_consen 139 VGSLLS---------GPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKV-----RPADEVFS----F-----GKE-EV 194 (433)
T ss_pred HHHHhh---------hhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccc-----cccchhhc----c-----ccc-cc
Confidence 776665 223355677888888877776665555544 43110 00000000 0 000 00
Q ss_pred HHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhh-hhHhhHHHhhhcC---CCC-chhHHHHHHHHH
Q psy7924 231 TDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINA-VVFYTVKIFKDAG---SSL-NPNLCTIIVGTI 305 (481)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g---~~~-~~~~~~~~~~~~ 305 (481)
+ ......++.....++.++.+..++..+...++....... ... ..++.. ...+ +++ ..+....+..++
T Consensus 195 ~---~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~-~~a~~fy~~~---~~~~gp~fs~~f~~~~~~vg~~~ 267 (433)
T PF03092_consen 195 P---CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSI-SSASSFYFQT---DALGGPHFSPSFYGTLSIVGSIA 267 (433)
T ss_pred c---hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC-CCccEEEEEe---ccccccccCHHHHHHHHHHHHHH
Confidence 0 000001111224555666654444444111111111000 011 111111 1122 333 223344455556
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcc
Q psy7924 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGE 385 (481)
Q Consensus 306 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 385 (481)
.++|..+..+...+..-|+++..+.++..+..+.-.......+.....+.. +..+.-..+........+.|.. ..++|
T Consensus 268 ~l~g~~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~l-vl~a~ 345 (433)
T PF03092_consen 268 SLLGILLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNLDLGIPDQ-WFALGDTILEEVIGMIAFMPSL-VLAAR 345 (433)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEeeeeCcCCe-EEEEEhHHHHHHHHHHHHHHHH-HHHHH
Confidence 666666666665666667777666665554443322211111100000111 3333333444445555555665 67789
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 386 IFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 386 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
+.|+...|+..++...+.++|..++..+...+.+..+
T Consensus 346 lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 346 LCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred HCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999999999888877665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-14 Score=133.68 Aligned_cols=380 Identities=14% Similarity=0.070 Sum_probs=2.9
Q ss_pred cccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH----
Q psy7924 3 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS---- 78 (481)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---- 78 (481)
...||....++.+.+ .|+++.++.|++.+.+-++..+..++..++.+|..|-|.+-.+.++.++|++++++-+
T Consensus 17 ~~~g~~~~~lttiEr---RF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~ 93 (539)
T PF03137_consen 17 MVSGYVNSSLTTIER---RFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSG 93 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcC
Confidence 456788889999999 9999999999999999999999999999999998888889999999999998875410
Q ss_pred --------------------------------------------HhHHhHhhhhhHHHHhhccccccceeeeeeccc---
Q psy7924 79 --------------------------------------------SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS--- 111 (481)
Q Consensus 79 --------------------------------------------~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~--- 111 (481)
+.....+ +++.++. |+|....++...+
T Consensus 94 ~y~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f----~~gq~l~--GiG~~pl~tLG~tYiD 167 (539)
T PF03137_consen 94 PYSYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVF----ILGQLLI--GIGATPLYTLGITYID 167 (539)
T ss_dssp ----------------------------------------------------------------SSS-------------
T ss_pred CCccccccccccccccccccccccccccccCccccccccccccchHHHHHH----HHHHHHH--hccccCCccceeeeec
Confidence 0012244 8899999 9999988888887
Q ss_pred ----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh--hHh---------hccc-h-hhH
Q psy7924 112 ----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA--QVI---------KERK-F-EAS 174 (481)
Q Consensus 112 ----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~~---------~~~~-~-~~~ 174 (481)
++..+...++..... .+|+.+|..++....-. ... .... . ...
T Consensus 168 Dnv~~~~splYiGi~~~~~--------------------~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i~p~dp~WvGA 227 (539)
T PF03137_consen 168 DNVSKKNSPLYIGILYAMS--------------------ILGPALGFLLGSFCLRIYVDFPKVPPDGVGITPSDPRWVGA 227 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccCccchhhhhHHh--------------------hccHHHHHHHHHHHHhceeCCccccccCCCCCCCCccHHHH
Confidence 455566666666666 77777777666321100 000 0000 0 123
Q ss_pred HHHHHHHhhHHHHHHHHHHhccCCC-hhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcC
Q psy7924 175 VYGLSIICALLPIFFVGLMLLMPES-PQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFST 253 (481)
Q Consensus 175 w~~~~~~~~~~~~~~~~~~~~~~es-p~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
|+.-|++.+...++..+-.+++|+. |+.. +..++.+...++....+.+...+.++.+...+.-+.-....+++++|
T Consensus 228 WWLGfli~g~~~~l~aipl~~FPk~lp~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~df~~~l~~Ll~N 304 (539)
T PF03137_consen 228 WWLGFLICGILLFLSAIPLFFFPKKLPGTS---ERQEEKESSERKEEDSDKDSFKDPKSKKSFGKSIKDFPKALKRLLTN 304 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccCCCcc---cccchhhhhhcchhhhhhhcccccccccchhhhhhhHHHHHHHHhcC
Confidence 6666777777766666666656544 2210 00000000000000000000000000000001111223345667777
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-chhHHH-HHHHHHHHHHHHHHHHHHHHhC--ChHHHHH
Q psy7924 254 PAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-NPNLCT-IIVGTIMMVTTWIATMIVDRLG--RRILLLV 328 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~-~~~~~~~~~~~~~~g~l~d~~g--rr~~~~~ 328 (481)
|. .+...+...........+..+.|.+++ +++.++ +++... .+...+..+|.+++|++.+|++ .|+....
T Consensus 305 p~-----f~~~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~ivkk~kl~~~~~~~~ 379 (539)
T PF03137_consen 305 PV-----FMCLILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYIVKKFKLSARGAAKF 379 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEEEEEecCcHHHHHHH
Confidence 63 222333333333334555556665554 577776 444433 3333456889999999999985 3444444
Q ss_pred HHHHHHHHHHHHHH--HHhhcCC--------C------CC-------------------------cc-c-cchhHHHHHH
Q psy7924 329 SAVIMALSTLTMGY--YFYLKNS--------G------SD-------------------------VS-N-IGWLPLGSLC 365 (481)
Q Consensus 329 ~~~~~~~~~~~~~~--~~~~~~~--------~------~~-------------------------~~-~-~~~~~~~~~~ 365 (481)
..+...++.+.... +...++. . .. .+ . .....++...
T Consensus 380 ~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~~C~~~~~~Fl~~~~ 459 (539)
T PF03137_consen 380 CIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPSDCCNKLIPFLILLF 459 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCcccccccHHHHHHHH
Confidence 44444443333111 0000000 0 00 00 0 1111222222
Q ss_pred HHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHH-HHHHHHHhHHHHHHHh
Q psy7924 366 VFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNW-VSVLVVTKFFGDVTLL 420 (481)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~-~g~~~~~~~~~~~~~~ 420 (481)
+..+..+....|.. ..+-..+|+++|+.+.|+...+.+ +|.+-+|.++|.+.|.
T Consensus 460 ~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~ 514 (539)
T PF03137_consen 460 ILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDS 514 (539)
T ss_dssp --------------------------------------------------------
T ss_pred HHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhh
Confidence 22233333334443 344478899999999999987765 5667789999998886
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4e-11 Score=110.42 Aligned_cols=181 Identities=15% Similarity=0.062 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy7924 259 GLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS 336 (481)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 336 (481)
+.+....+.+...+..........+.+.+ +++++. +.+....+..+...+.++..|++.||+|.|+++..+.++..+.
T Consensus 34 r~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~ 113 (462)
T PRK15034 34 RNLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIP 113 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 34444444444444444455555555554 688887 6677888888888999999999999999999999999888887
Q ss_pred HHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHH
Q psy7924 337 TLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416 (481)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~ 416 (481)
.+...+..... .++.+..++...+.+++ +..+. .....+++.+|+++||++.|+....+++|..+.+.+.+.
T Consensus 114 ~~~~~~a~~~~------~~s~~~lli~r~l~Gig-g~~f~-~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~ 185 (462)
T PRK15034 114 CVWLGIAVQNP------NTPFGIFIVIALLCGFA-GANFA-SSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPL 185 (462)
T ss_pred HHHHHHHHccc------CCCHHHHHHHHHHHHHH-HHhHH-HHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 77665521000 12333444444455444 33343 344778899999999999999987788887776666554
Q ss_pred HH-----Hhh-------------cCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 417 VT-----LLL-------------GGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 417 ~~-----~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
+. +.. +++....++..+.++..++.++..++
T Consensus 186 ~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~ 234 (462)
T PRK15034 186 VIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMND 234 (462)
T ss_pred HHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33 322 24445556666666666666655544
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=113.71 Aligned_cols=151 Identities=18% Similarity=0.053 Sum_probs=112.2
Q ss_pred hHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhH
Q psy7924 282 TVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLP 360 (481)
Q Consensus 282 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (481)
.|.+.++.+.+. +.+.......++..++.++.|+++||+|||+.+..+..+..++.+..... ++.+..
T Consensus 29 ~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~~l 97 (401)
T PRK11043 29 FKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV-----------ESAAQL 97 (401)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-----------cCHHHH
Confidence 345667788877 66778888889999999999999999999999998888777776665542 223333
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q psy7924 361 LGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVF 440 (481)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 440 (481)
.+...+.+.+.+... +....+..|.+|++.++...+..+....++..++|.+.+.+.+..||+..+.+.+.+.++..++
T Consensus 98 ~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~ 176 (401)
T PRK11043 98 LVLRFVQAVGVCSAA-VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILP 176 (401)
T ss_pred HHHHHHHHhhhHHHH-HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 333344433333222 2333677899999989999999888889999999999999999999999888887777666555
Q ss_pred HHHh
Q psy7924 441 TYIL 444 (481)
Q Consensus 441 ~~~~ 444 (481)
....
T Consensus 177 ~~~~ 180 (401)
T PRK11043 177 TLRL 180 (401)
T ss_pred HHHc
Confidence 4433
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-11 Score=113.79 Aligned_cols=293 Identities=15% Similarity=0.100 Sum_probs=178.7
Q ss_pred cccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH----
Q psy7924 3 TILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS---- 78 (481)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~---- 78 (481)
+..+|....+..+.+ .|+++.++.|++.+.+-++..+...+..+..-|.-|-+.+-++.++++++++++++-+
T Consensus 111 l~~~y~~s~IttiEr---RF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~ 187 (735)
T KOG3626|consen 111 LYVGYFNSVITTIER---RFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSG 187 (735)
T ss_pred hhhhhhhhhhhhhhh---hcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcC
Confidence 445788888889988 9999999999999999999999999999999999999999999999999999986520
Q ss_pred ----------------------------------------------HhHHhHhhhhhHHHHhhccccccceeeeeeccc-
Q psy7924 79 ----------------------------------------------SMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS- 111 (481)
Q Consensus 79 ----------------------------------------------~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~- 111 (481)
+..+..+ +++.++. |+|....++....
T Consensus 188 ~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llf----f~~q~l~--GIG~Tpi~tlGisY 261 (735)
T KOG3626|consen 188 PYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLF----FLGQLLL--GIGATPIFTLGISY 261 (735)
T ss_pred cchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHH----HHHHHHh--hcCCCCCccCCCcc
Confidence 0011233 8888999 9999888888877
Q ss_pred ------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh--hH-hh-----c--cchhhHH
Q psy7924 112 ------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA--QV-IK-----E--RKFEASV 175 (481)
Q Consensus 112 ------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~--~~-~~-----~--~~~~~~w 175 (481)
.++.+...++..... .+|++++..++....-. .. .. . -.....|
T Consensus 262 iDDnvk~~~SplYlgi~~~~~--------------------~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAW 321 (735)
T KOG3626|consen 262 IDDNVKKKNSPLYLGILYSMA--------------------ILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAW 321 (735)
T ss_pred ccccccccCCcHHHHHHHHHH--------------------HhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHH
Confidence 445566666666555 78888887777321110 00 00 0 0112357
Q ss_pred HHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcc
Q psy7924 176 YGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPA 255 (481)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
+.-|++.+.+.++..+..+++|....- ..++.++++ .+..+.++...+++ ....+.-+.-....+++++||.
T Consensus 322 WlGFLi~g~~~~~~a~p~f~fPk~lp~---~~~~~~~~~-~~~~k~~~~~~~~~----~~~~~~ikdfp~s~~~ll~N~i 393 (735)
T KOG3626|consen 322 WLGFLICGALLLFSAVPLFFFPKELPK---SQKRKRARD-LHVLKTESGGAKSD----KTFGKKIKDFPKSIKRLLSNPI 393 (735)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcccCcc---ccccchhhh-hcccccccccccCC----cchhhhHHHHHHHHHHHhcCch
Confidence 888888888888888888877755311 111000000 00000000000000 0000000111234566777753
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-chhHHHHH-HHHHHHHHHHHHHHHHHHhCC--hHHHHHHH
Q psy7924 256 AKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-NPNLCTII-VGTIMMVTTWIATMIVDRLGR--RILLLVSA 330 (481)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~-~~~~~~~~~~~~g~l~d~~gr--r~~~~~~~ 330 (481)
.....+........+.....|.|.+++ ++|.+. .+..+... ...+..+|.+++|++..|+.- |....+..
T Consensus 394 -----f~~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl~~r~~a~~~~ 468 (735)
T KOG3626|consen 394 -----FMLVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKLSARGAAKFVI 468 (735)
T ss_pred -----HHHHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecccHHHHHHHHH
Confidence 333333334444445556666665554 578876 44444433 334457888999999998763 44444444
Q ss_pred HHHHHHH
Q psy7924 331 VIMALST 337 (481)
Q Consensus 331 ~~~~~~~ 337 (481)
+...+..
T Consensus 469 ~~~~l~l 475 (735)
T KOG3626|consen 469 VCSVLSL 475 (735)
T ss_pred HHHHHHH
Confidence 4333333
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.8e-12 Score=120.00 Aligned_cols=145 Identities=19% Similarity=0.183 Sum_probs=106.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhh
Q psy7924 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL 373 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (481)
+.+.......++..++.++.|+++||+|||+.+..+..+..++.++...... ....+..++...+.+.+.+.
T Consensus 72 ~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~~~~~ 143 (481)
T TIGR00879 72 LWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAAF--------ALSVEMLIVGRVLLGIGVGI 143 (481)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc--------ccchHHHHHHHHHHHhhhhH
Confidence 5567888888999999999999999999999999998888887777644210 11112444455555555444
Q ss_pred ccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHH---HHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCC
Q psy7924 374 GFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFF---GDVTLLLGGHGAFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 374 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
.. +....++.|.+|+++|+++.++.+....+|..+++.+. +...+..+|++.|.+.+...+ ..++..+++||+
T Consensus 144 ~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~-~~~~~~~~l~~~ 219 (481)
T TIGR00879 144 AS-ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAG-LLFLGLFFLPES 219 (481)
T ss_pred HH-hHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHH-HHHHHHhcCCCC
Confidence 33 34457889999999999999999999999999999987 544466789888887544443 344444566765
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.1e-11 Score=111.22 Aligned_cols=155 Identities=14% Similarity=-0.072 Sum_probs=107.6
Q ss_pred hhhhHhhH-HHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 276 NAVVFYTV-KIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 276 ~~~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
.......| ++.++.|.+. +.+.......+...+++++.|+++||+|||+++..+.++.+++.+.........+..
T Consensus 32 ~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 108 (399)
T PRK05122 32 GLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWP--- 108 (399)
T ss_pred HHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhccc---
Confidence 33333444 4566778877 667888888899999999999999999999999999888777655544321110000
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
..+....++...+.+.+.+... +....+..|.+|+++|+++.++......+|..+++.+.+.+.+..||+..+.+...+
T Consensus 109 ~~~~~~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~ 187 (399)
T PRK05122 109 VLSLLLLLLGRLLLGIGESLAG-TGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLL 187 (399)
T ss_pred hhHHHHHHHHHHHHHhhHHhhc-chHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0011223333444554444333 333466779999999999999998888899999999999999988988776654444
Q ss_pred H
Q psy7924 434 A 434 (481)
Q Consensus 434 ~ 434 (481)
.
T Consensus 188 ~ 188 (399)
T PRK05122 188 A 188 (399)
T ss_pred H
Confidence 3
|
|
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=8.1e-11 Score=112.53 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=108.4
Q ss_pred hhhhhhHhhHHHhhhcCCCCch--hHH-----HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhh
Q psy7924 274 GINAVVFYTVKIFKDAGSSLNP--NLC-----TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYL 346 (481)
Q Consensus 274 ~~~~~~~~~~~~~~~~g~~~~~--~~~-----~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~ 346 (481)
.+....+..|.+.+++..+.+. ... .....++..++.++.|+++||+|||+++..+.++.+++.++.++.
T Consensus 31 d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~~--- 107 (490)
T PRK10642 31 DFGVYGFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLI--- 107 (490)
T ss_pred HHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhc---
Confidence 3445555667766665433322 211 234446678999999999999999999999999999998888773
Q ss_pred cCCCCCccccch--------hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q psy7924 347 KNSGSDVSNIGW--------LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT 418 (481)
Q Consensus 347 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 418 (481)
++.. ..++.-.+.+++.+.... ....+++|.+|+++|+...++......+|..+++.+...+.
T Consensus 108 --------~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~-~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~ 178 (490)
T PRK10642 108 --------PSYATIGIWAPILLLLCKMAQGFSVGGEYT-GASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLIS 178 (490)
T ss_pred --------ccHHHHHHHHHHHHHHHHHHHHhHhHhhHH-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111 133444445554444443 44588999999999999999988877777777776544332
Q ss_pred --------HhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 419 --------LLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 419 --------~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
+..||++.|++.+...++ .++.....||+.
T Consensus 179 ~~~~~~~~~~~gWR~~f~i~~~~~l~-~~~~~~~~~esp 216 (490)
T PRK10642 179 TIVGEANFLDWGWRIPFFIALPLGII-GLYLRHALEETP 216 (490)
T ss_pred HhcCHHHhcCccHHHHHHHHHHHHHH-HHHHHHcCCCCh
Confidence 257899999876544433 333344566653
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.6e-11 Score=105.52 Aligned_cols=173 Identities=18% Similarity=0.145 Sum_probs=129.8
Q ss_pred HHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q psy7924 264 LGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY 342 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 342 (481)
....+...+..........+.+.++++++. +.+++..+..+.+.+.+++.|.+.||+|.|++...+.++..+-.+...+
T Consensus 19 S~~af~v~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~ 98 (417)
T COG2223 19 STLAFDVGFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAF 98 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555666677778899998 6678889999999999999999999999999999999998888877766
Q ss_pred HHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 343 YFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
... ..+.+..++..++.+.+ .+.......++++.||++++|.+.|+.. .+|+|..+...+.+.+....+
T Consensus 99 a~~--------~~~~~~ll~~gll~G~~--GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g 167 (417)
T COG2223 99 AVT--------YPSTWQLLVIGLLLGLA--GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFG 167 (417)
T ss_pred Hcc--------CCchHHHHHHHHHHhcc--cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHh
Confidence 421 11113333333333332 2233344478899999999999999999 999999999999999999888
Q ss_pred ---CChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 423 ---GHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 423 ---~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
|+....++....++..+..++...+
T Consensus 168 ~~~w~~~~~i~~~~l~v~~v~~~~~~~d 195 (417)
T COG2223 168 FLAWRNVAGIYVVALAIAAVLAWLGMND 195 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888888777777776543
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.9e-12 Score=106.89 Aligned_cols=144 Identities=15% Similarity=0.121 Sum_probs=101.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhc
Q psy7924 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
.+.....+++.+++.++.+|.++||+|||+++..+.+..++.....+.. .+. ..++..-+.+.. .-+
T Consensus 70 aGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S-----------~~F-~afv~aR~l~Gi-~kg 136 (451)
T KOG2615|consen 70 AGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS-----------RNF-AAFVLARFLGGI-FKG 136 (451)
T ss_pred hhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH-----------HHH-HHHHHHHHhhhh-ccC
Confidence 4667888999999999999999999999999999999999877776662 222 223322233222 233
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH---hhcCChhHHH-H---HHHHHHHHHHHHHhccC
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL---LLGGHGAFWI-F---SVIAALGAVFTYILVPE 447 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~g~~~~~~~-~---~~~~~~~~~~~~~~~~~ 447 (481)
...+..++++|++++++|+.+++..+....+|-++||.+.+++.. ..|.. ++.. . .++.........+++||
T Consensus 137 nl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~-p~alP~~~v~i~a~~~v~~~~~~lpE 215 (451)
T KOG2615|consen 137 NLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSY-PFALPCLLVFILAAGDVTFFPWFLPE 215 (451)
T ss_pred chHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccC-chHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 444556999999999999999999999999999999999998877 33432 2222 1 11111112334567788
Q ss_pred CCCCC
Q psy7924 448 TKGKT 452 (481)
Q Consensus 448 ~~~~~ 452 (481)
|-..+
T Consensus 216 TL~~r 220 (451)
T KOG2615|consen 216 TLPLR 220 (451)
T ss_pred cccch
Confidence 85443
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.1e-11 Score=112.44 Aligned_cols=160 Identities=11% Similarity=0.061 Sum_probs=105.8
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (481)
.+.+.+.++.|.+. +.+.......++..++.++.|++.||+|||+.+..+..+..++.+....... . ..+.+
T Consensus 34 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~-~------~~~~~ 106 (402)
T TIGR00897 34 GWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL-G------HANYP 106 (402)
T ss_pred HhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc-c------CccHH
Confidence 34455557788887 6678888899999999999999999999999999988888877654422100 0 11222
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHH-HHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSV-LVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
.......+.+.+.+... +.....+.+.+|+++|+++.|+.+....+|. .++|.+.+.+.+..|++..++.......+.
T Consensus 107 ~l~~~~~i~G~g~~~~~-~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~ 185 (402)
T TIGR00897 107 LILLFYGIRGLGYPLFA-YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTG 185 (402)
T ss_pred HHHHHHHHHHcchHHHH-hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence 23333333333332222 2223556788999999999999999999986 578888888888778665555444333333
Q ss_pred HHHHHHhccC
Q psy7924 438 AVFTYILVPE 447 (481)
Q Consensus 438 ~~~~~~~~~~ 447 (481)
.++..+..++
T Consensus 186 ~~~~~~~~~~ 195 (402)
T TIGR00897 186 GVIALFSNKD 195 (402)
T ss_pred HHHHHhccCC
Confidence 3333344443
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.4e-11 Score=113.95 Aligned_cols=165 Identities=12% Similarity=0.038 Sum_probs=115.0
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.......|.+.++.+.+. +.+.......+...+++++.|+++||+|||+.+..+..+.+++.+.+....... .
T Consensus 34 ~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~------~ 107 (417)
T PRK10489 34 GLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLP------E 107 (417)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcC------C
Confidence 344555676666766665 567788888899999999999999999999988887777766665543321110 1
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIA 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 434 (481)
++.+...+...+.+.+.+....+. ..++.|..|+++|+++.++.+....+|..++|.+.+.+.+..+|++.+.+.+...
T Consensus 108 ~~~~~l~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~ 186 (417)
T PRK10489 108 PSLLAIYLLGLWDGFFGSLGVTAL-LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGT 186 (417)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 122333333334444434333333 3677899999999999999999999999999999999999889988887666555
Q ss_pred HHHHHHHHHhccCC
Q psy7924 435 ALGAVFTYILVPET 448 (481)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (481)
++..+ ..+..|++
T Consensus 187 ~~~~~-~~~~l~~~ 199 (417)
T PRK10489 187 FITLL-PLLRLPAL 199 (417)
T ss_pred HHHHH-HHHhCCCC
Confidence 54443 33455654
|
|
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.3e-11 Score=108.82 Aligned_cols=147 Identities=11% Similarity=-0.035 Sum_probs=115.9
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.......|.+.++++.+. +.+.......++..++.++.|+++||+|||+++..+..+.+++.+...+ .
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~-----------a 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL-----------Y 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH-----------C
Confidence 445566788888899887 6677888888999999999999999999999999999999999998877 3
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-cCChhHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL-GGHGAFWIFSVI 433 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~~ 433 (481)
++.+..++...+.+++.+...... ..++.+.+| ++|+.+.++.......|..+++.+.+.+.++. +|+..+.+.+..
T Consensus 95 ~~~~~ll~~r~l~Gig~~~~~~~~-~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~ 172 (393)
T PRK09705 95 PQSALLLSSALLGGVGIGIIQAVM-PSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALP 172 (393)
T ss_pred cchHHHHHHHHHHHhHHHHHhhhh-hHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 344455555666666665544443 367778887 77999999999999999999999988888775 788777665554
Q ss_pred HH
Q psy7924 434 AA 435 (481)
Q Consensus 434 ~~ 435 (481)
.+
T Consensus 173 ~~ 174 (393)
T PRK09705 173 AV 174 (393)
T ss_pred HH
Confidence 43
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.2e-11 Score=110.31 Aligned_cols=158 Identities=13% Similarity=0.066 Sum_probs=107.2
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccccc
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLV-SAVIMALSTLTMGYYFYLKNSGSDVSNIG 357 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (481)
..++++.++.|.+. +.+.......+...+..++.|+++||+|||+.+.. +.....++.+.... .++.
T Consensus 19 ~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~~~~ 87 (375)
T TIGR00899 19 TLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW-----------NRNY 87 (375)
T ss_pred HHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh-----------cchH
Confidence 33445566788876 56777777888888999999999999999887654 44444444444433 2222
Q ss_pred hhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhH--HHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHH
Q psy7924 358 WLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIA--VSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAA 435 (481)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~--~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 435 (481)
+..++...+.+.+.+ ...+....+..|..|++.|+.+ .+.......+|..++|.+.+.+.+..+|+..|.+.+.+.+
T Consensus 88 ~~l~~~~~~~g~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~ 166 (375)
T TIGR00899 88 FLLLVLGVLLSSFAS-TANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFV 166 (375)
T ss_pred HHHHHHHHHHHhhhh-hhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHH
Confidence 333332233332222 2334444666787777776654 5777778889999999999999898999999998888777
Q ss_pred HHHHHHHHhccCCC
Q psy7924 436 LGAVFTYILVPETK 449 (481)
Q Consensus 436 ~~~~~~~~~~~~~~ 449 (481)
+..++..+..||.+
T Consensus 167 ~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 167 LCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHhCCCcc
Confidence 77666666677644
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-11 Score=93.96 Aligned_cols=135 Identities=19% Similarity=0.246 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhh
Q psy7924 301 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPW 380 (481)
Q Consensus 301 ~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (481)
...++..++.++.+++.||+|||+.+..+.....++.+..... .+.+.......+.+.+.+... +...
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~~~~~~~-~~~~ 73 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS-----------SNITVLIIARFLQGFGAAFAL-VAGA 73 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh-----------ccHHHHHHHHHHHHHHHHHHH-HhHH
Confidence 3456778899999999999999999988888777776665442 223333444444444444333 3445
Q ss_pred hhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 381 MLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 381 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
.+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+|+..+.+.+.+..+..+...+..||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 74 ALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 7888999999999999999999999999999999999988888888888877777776666655554
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.7e-11 Score=108.49 Aligned_cols=155 Identities=21% Similarity=0.240 Sum_probs=119.3
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........+.+.++.+.+. +.+.......+...++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~---------- 84 (352)
T cd06174 15 RGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA---------- 84 (352)
T ss_pred hhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh----------
Confidence 3445556677777777776 56778888889999999999999999999999999999888888777652
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
++.+.......+.+.+.+... +....+..|.+|+++|++..++.+....+|..++|.+.+.+.+..+|+..+.+.+..
T Consensus 85 -~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (352)
T cd06174 85 -SSLWLLLVGRFLLGLGGGALY-PAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAIL 162 (352)
T ss_pred -ccHHHHHHHHHHHHccccccc-HhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 233344444444444444333 444588899999999999999999999999999999999999988888888877766
Q ss_pred HHHHHHHH
Q psy7924 434 AALGAVFT 441 (481)
Q Consensus 434 ~~~~~~~~ 441 (481)
.++..+..
T Consensus 163 ~~~~~~~~ 170 (352)
T cd06174 163 GLLLALLL 170 (352)
T ss_pred HHHHHHHH
Confidence 66555444
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.1e-10 Score=108.55 Aligned_cols=146 Identities=12% Similarity=-0.098 Sum_probs=101.5
Q ss_pred hhH-HHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch
Q psy7924 281 YTV-KIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358 (481)
Q Consensus 281 ~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (481)
..| ++.++.|.+. +.+.......+...+++++.|+++||+|||+.+..+.+...++.+............ ..+.+
T Consensus 37 ~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 113 (392)
T PRK12382 37 VIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVSA---PFKFA 113 (392)
T ss_pred hhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccch---hHHHH
Confidence 344 4456788877 667888888999999999999999999999999988877666544332211100000 11223
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHH
Q psy7924 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIF 430 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~ 430 (481)
...+...+.+.+.+... +....+..|.+|+++|+++.++.......+..++|.+.+.+.+..||+..+.+.
T Consensus 114 ~l~~~r~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~ 184 (392)
T PRK12382 114 LLVVGRLILGFGESQLL-TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTT 184 (392)
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 33444444444444333 333367779999999999999999989999999999999888888887655443
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=112.04 Aligned_cols=364 Identities=15% Similarity=0.146 Sum_probs=197.2
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccc-hhhhhhhhhhHHHHhHHH-HHH--HHhHHhHhhhhhHHHHhhc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR-KNTMLLLAVPTVTESDLS-FIG--SSMALGAVFGSPVVGNLVD 96 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Gr-r~~~~~~~~~~~~~~~~~-~~~--~~~~~~~l~g~~~~~r~~~ 96 (481)
|.+.+.+..|++.++..++.+++++..|+.+.|.+. |+-++.+.++..+|+++- ++. ++...+.+ +++|++.
T Consensus 65 D~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~m----L~~R~l~ 140 (488)
T KOG2325|consen 65 DPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLM----LVARILT 140 (488)
T ss_pred CCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHH----HHHHHHc
Confidence 577788899999999999999999999999999997 888889999999999887 332 22122277 9999999
Q ss_pred cccccceeeeeec------cccccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhcc-
Q psy7924 97 TVGRKNTMLLLAV------PSFDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKER- 169 (481)
Q Consensus 97 ~~G~~~~~~~~~~------~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~- 169 (481)
|+|.+.....- ...+.|.++.+....+. .+|..+|+.+.....-....+..
T Consensus 141 --Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~--------------------vlg~ilGp~~q~~f~~Lg~~G~~i 198 (488)
T KOG2325|consen 141 --GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGF--------------------VLGIILGPTIQLAFTPLGEKGFMI 198 (488)
T ss_pred --CcCcccHHHHHHHHHhccCccchHHHHHHhhhHH--------------------HHHHHHhHHHHHHHhhhcCCceEE
Confidence 99987654322 22777888888777777 66666666555221100000000
Q ss_pred ---chhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCcc
Q psy7924 170 ---KFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKV 245 (481)
Q Consensus 170 ---~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (481)
...+-+-.+-|+.++..++.++... ++.|.++--..++.+++ ++++
T Consensus 199 ~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~--------------------------~~~~---- 248 (488)
T KOG2325|consen 199 LPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV--------------------------EEEK---- 248 (488)
T ss_pred cCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc--------------------------hhhc----
Confidence 0112234566777777777666665 57776532100000000 0000
Q ss_pred chHHHhcCcc-hhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCc-hh-HHHHHHHHHHHHHHHHH-HHHHHH--
Q psy7924 246 PLMQAFSTPA-AKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN-PN-LCTIIVGTIMMVTTWIA-TMIVDR-- 319 (481)
Q Consensus 246 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~-~~~~~~~~~~~~~~~~~-g~l~d~-- 319 (481)
.-++..+.++ -+...+.++...+...+.....-..+.+.....++...+ +. .......+.+.+...+. .+..-|
T Consensus 249 ~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~~av~~~gi~~~~~g~ls~~~~l~~~f~~l~ 328 (488)
T KOG2325|consen 249 SDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGSEAVLYNGITLSISGILSVILLLLYIFTRLG 328 (488)
T ss_pred cchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0011111221 233445555555555554444444555555555666542 22 22223333333322222 222223
Q ss_pred -hCChHHHHHHHHHHHHHHHHHHHHHhhcC-C-C--------CCcccc-------chhHHHHHHHHHHHHhhcc----Cc
Q psy7924 320 -LGRRILLLVSAVIMALSTLTMGYYFYLKN-S-G--------SDVSNI-------GWLPLGSLCVFIIVFSLGF----GP 377 (481)
Q Consensus 320 -~grr~~~~~~~~~~~~~~~~~~~~~~~~~-~-~--------~~~~~~-------~~~~~~~~~~~~~~~~~~~----~~ 377 (481)
+.+|..+..+......+............ + . ...... ..........+...++.++ .+
T Consensus 329 ~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~wc~~~~~v~~~~~l~~~i~~~g~~~P~~~~~ 408 (488)
T KOG2325|consen 329 KIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSWCDTTTAVPLILYLISFIVVFGIAFPFISTA 408 (488)
T ss_pred hhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchhhccCcccChhhheeehhheeccccccccch
Confidence 23344444443333332222211100000 0 0 000000 0001111111112222222 22
Q ss_pred hhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy7924 378 IPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 378 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
.. +.-+|+..++.+++..++....+..+..++|.+........|.++...+..+..++...+.
T Consensus 409 ~~-tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~~~~~~~l~~~~l~ 471 (488)
T KOG2325|consen 409 LD-TLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWIILLCLLLVVAALW 471 (488)
T ss_pred HH-HHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHHHHHHHHHHHHHHH
Confidence 33 5667899999999999999999999999999999888888898877666555555444443
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.4e-11 Score=111.08 Aligned_cols=153 Identities=13% Similarity=0.184 Sum_probs=114.7
Q ss_pred HhhHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy7924 280 FYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359 (481)
Q Consensus 280 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (481)
...+++.++.|-+++..++.....+...++.++.|+++|.+|||..++.+.++..++.++.+. .++...
T Consensus 65 ~~l~~I~~diG~~~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at-----------A~~~~~ 133 (599)
T PF06609_consen 65 SILPYINADIGGSDNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT-----------AQNMNT 133 (599)
T ss_pred HHHHHHHHhcCCCccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc-----------CCcHHH
Confidence 345677788888777778888888999999999999999999999999999999999998866 344555
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHH
Q psy7924 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV 439 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 439 (481)
.+....+.+.+.+.. .+....++|..|.+.|..+.++.....-.....++.+...+..+.+||+.|++..+...+..+
T Consensus 134 ~iag~~l~GvgaG~~--~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~v 211 (599)
T PF06609_consen 134 FIAGMVLYGVGAGVQ--ELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALV 211 (599)
T ss_pred HHHHHHHHHHhhHHH--HHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHH
Confidence 666666666654433 334456899999999988877666544444445666666566667899999988887777665
Q ss_pred HHHHhc
Q psy7924 440 FTYILV 445 (481)
Q Consensus 440 ~~~~~~ 445 (481)
..+++.
T Consensus 212 l~~~fY 217 (599)
T PF06609_consen 212 LIFFFY 217 (599)
T ss_pred HHHHHh
Confidence 554443
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.2e-09 Score=93.83 Aligned_cols=327 Identities=13% Similarity=0.027 Sum_probs=187.0
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhcccc-----chhhhhh-hhhhHHHHhHHHHHH-----H-------HhHH
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG-----RKNTMLL-LAVPTVTESDLSFIG-----S-------SMAL 82 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~G-----rr~~~~~-~~~~~~~~~~~~~~~-----~-------~~~~ 82 (481)
|++++..-.+.+.+...+..- ..+.+|+.||+.+ ||..+++ +.++...+..+..++ . +.+.
T Consensus 9 EL~vpA~lv~~lval~~~~ap-~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~ 87 (403)
T PF03209_consen 9 ELGVPAWLVALLVALHYLVAP-LRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWL 87 (403)
T ss_pred HhccHHHHHHHHHHHHHHHHH-HHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHH
Confidence 888889999999888887654 6899999999998 7765544 555555554444432 2 2332
Q ss_pred hHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 83 GAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 83 ~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
+.. ...-.+..+|++.....+.... +++|+++.++..... .+|.+++..
T Consensus 88 g~~----~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Ml--------------------i~G~iv~ai 143 (403)
T PF03209_consen 88 GLA----LAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVML--------------------IVGIIVSAI 143 (403)
T ss_pred HHH----HHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHH--------------------HHHHHHHHH
Confidence 232 3333333237666555444433 889999999988887 788877776
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQN 235 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 235 (481)
+.. ..+.......-++....+ +++.+...++..+=.|.++.. .. +.
T Consensus 144 ~~g-----~lL~~~s~~rL~~v~~~~-a~i~~~l~~ia~wg~E~r~~~-~~---------------------------~~ 189 (403)
T PF03209_consen 144 VFG-----RLLDPFSPERLIQVIQGV-ALIALLLNLIALWGQEPRRSR-RA---------------------------AA 189 (403)
T ss_pred HHH-----HHccccCHHHHHHHHHHH-HHHHHHHHHHHHHhcccCCcc-cc---------------------------cC
Confidence 652 111221122223322222 222222222222222321000 00 00
Q ss_pred hhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhh-hHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHH
Q psy7924 236 SLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAV-VFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIA 313 (481)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~ 313 (481)
..+++...+..+++...+|+-++.+. ..++.... ++.. ...-||=-+.+|++. +....+.....+..++....
T Consensus 190 ~~~~~~~f~~a~~~~~~~~~a~~f~~-fl~l~t~a----~~~QD~iLEPygg~Vfgmsv~eTT~Lta~~~~G~L~G~~~~ 264 (403)
T PF03209_consen 190 AERPRPPFREAWRQVWASPQARRFFV-FLFLGTLA----FFMQDVILEPYGGEVFGMSVGETTRLTAFWGGGTLLGMLLA 264 (403)
T ss_pred CCCCCccHHHHHHHHHhCCChhHHHH-HHHHHHHH----HHhhHHHcCCchhHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 00111111234555666664443322 22222211 1111 122344445578887 55667888888888898888
Q ss_pred HHHHH-HhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccch
Q psy7924 314 TMIVD-RLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIK 392 (481)
Q Consensus 314 g~l~d-~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r 392 (481)
+++.. |.++++.-..+.....++...+..... ..+.+.......+++++.+....... +...++.+++..
T Consensus 265 g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~--------~~~~~~~~~~~~l~G~g~G~f~vgal-s~mM~lt~~~~a 335 (403)
T PF03209_consen 265 GFLLSRRLGKKRTAALGCLLGALAFALIILAGP--------LGSPWLFRPGVFLLGLGNGLFTVGAL-SLMMDLTSAGRA 335 (403)
T ss_pred HHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHh--------cccchHHHHHHHHHHHhhhHHHHHHH-HHHHhCCCCcch
Confidence 88776 567777777777777777666554321 22345555556666665555443333 444578888889
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy7924 393 GIAVSIACLFNWVSVLVVTKFFGDVTLL 420 (481)
Q Consensus 393 ~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 420 (481)
|+.+|.....+.+...++..+.|.+.|.
T Consensus 336 G~~mG~WGaaQA~A~Glg~~~GG~~~D~ 363 (403)
T PF03209_consen 336 GLFMGAWGAAQAIARGLGTFLGGALRDL 363 (403)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888888888877764
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-10 Score=107.59 Aligned_cols=157 Identities=10% Similarity=-0.004 Sum_probs=117.0
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.......|.+.++.+.+. +.+.......++..++++..+++.||+|||+.+..+..+.+++.+.+..... .
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--------~ 91 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--------I 91 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh--------h
Confidence 444566788888889887 6678888899999999999999999999999999999998888776533210 1
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh--------------
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL-------------- 420 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~-------------- 420 (481)
++.+.......+.+.+.+....+.. .++.+..|++.|++..++.+....+|..++|.+.+.+...
T Consensus 92 ~~~~~~l~~~~l~G~g~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~ 170 (410)
T TIGR00885 92 MNYTLFLVGLFILTAGLGFLETAAN-PYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLS 170 (410)
T ss_pred ccHHHHHHHHHHHHhhHHHHHhhhh-HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcC
Confidence 1233444445555555555444443 6777888999999999999999999999999988776422
Q ss_pred ------------hcCChhHHHHHHHHHHHHHHH
Q psy7924 421 ------------LGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 421 ------------~g~~~~~~~~~~~~~~~~~~~ 441 (481)
.+|+.+|.+.+++.++..++.
T Consensus 171 ~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~ 203 (410)
T TIGR00885 171 PEELSAIKHSDLASVQTPYMIIGAVVLAVALLI 203 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358888887777666554443
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=107.90 Aligned_cols=174 Identities=13% Similarity=0.032 Sum_probs=106.7
Q ss_pred HHhhhhhhhhHhhHHHhhhcC---CCC-chhH---HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q psy7924 270 QQFGGINAVVFYTVKIFKDAG---SSL-NPNL---CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY 342 (481)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~g---~~~-~~~~---~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 342 (481)
.............|.+.++.+ .+. +... ......++..+++++.|+++||+|||+.+..+..+..++.+..++
T Consensus 33 ~~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~ 112 (432)
T PRK10406 33 VEWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIAC 112 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhh
Confidence 333344556666777777754 222 1112 233344555699999999999999999999999999888888766
Q ss_pred HHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH----
Q psy7924 343 YFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT---- 418 (481)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~---- 418 (481)
....... .........+.-.+.+++.+... +...++++|.+|+++|+...++.......|..+++.+...+.
T Consensus 113 ~~~~~~~---~~~~~~~l~~~R~l~G~g~g~~~-~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~ 188 (432)
T PRK10406 113 LPGYETI---GTWAPALLLLARLFQGLSVGGEY-GTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLE 188 (432)
T ss_pred cCCchhH---HHHHHHHHHHHHHHHHhhhhhhH-hhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3100000 00011123344444444444333 444589999999999999999887777777777666544332
Q ss_pred ----HhhcCChhHHHHHHHHHHHHHHHHHhccCC
Q psy7924 419 ----LLLGGHGAFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 419 ----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
+..||+..|.+.++..++. .+.....||+
T Consensus 189 ~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~ 221 (432)
T PRK10406 189 DAELREWGWRIPFALGAVLAVVA-LWLRRQLDET 221 (432)
T ss_pred HHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCC
Confidence 2578999998766555443 2223334554
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.2e-10 Score=101.90 Aligned_cols=160 Identities=11% Similarity=0.010 Sum_probs=125.4
Q ss_pred hhhhhHhhHHHhhhcCCCC-c-hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy7924 275 INAVVFYTVKIFKDAGSSL-N-PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~-~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (481)
-....+..|++.++.|++. + .+.+...+..+..+..++.|+++||+|.|+++..+.+...+..++.++.
T Consensus 42 R~n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa--------- 112 (511)
T TIGR00806 42 RPGESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG--------- 112 (511)
T ss_pred hchHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH---------
Confidence 3555667788888999998 5 5778888899999999999999999999999999999998888888773
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHH--H
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI--F 430 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~--~ 430 (481)
++...+.+.-++++.+-+..+ ....++...+|+++|++++|+.+....+|.++++++.+. ....||+.-..+ +
T Consensus 113 --~Sl~~L~i~R~llGvaEA~~~--A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~gWr~y~~Ln~I 187 (511)
T TIGR00806 113 --TSVWHMQLMEVFYSVTMAARI--AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLGWISYSTLNII 187 (511)
T ss_pred --HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCchhHHHHHHH
Confidence 344556666777777766666 445888899999999999999999999999999999998 666788764432 3
Q ss_pred HHHHHHHHHHHHHhccCC
Q psy7924 431 SVIAALGAVFTYILVPET 448 (481)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~ 448 (481)
.......+++..+++|..
T Consensus 188 sl~s~~~a~~~a~~LP~~ 205 (511)
T TIGR00806 188 SLVFMTFSVFLALFLKRP 205 (511)
T ss_pred HHHHHHHHHHHHHhCCCC
Confidence 333344444555666743
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2e-10 Score=108.16 Aligned_cols=159 Identities=18% Similarity=0.065 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhH-HHHHH-----HHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy7924 261 LIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNL-CTIIV-----GTIMMVTTWIATMIVDRLGRRILLLVSAVIM 333 (481)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~-~~~~~-----~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~ 333 (481)
.....+..+.............|.+.++++.+. +... ..... .+...++.++.|+++||+|||+.+..+..+.
T Consensus 17 ~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~ 96 (434)
T PRK15075 17 ILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSIM 96 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 344444445555556677788899988887765 3222 21111 2223468899999999999999999999988
Q ss_pred HHHHHHHHHHHhhcCCCCCccccch--------hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHH
Q psy7924 334 ALSTLTMGYYFYLKNSGSDVSNIGW--------LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWV 405 (481)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~ 405 (481)
.++.+..++. ++.. ..++...+.+.+.+...... ..+++|.+|+++|+++.++.....++
T Consensus 97 ~~~~~l~~~~-----------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~-~~~~~e~~p~~~rg~~~~~~~~~~~~ 164 (434)
T PRK15075 97 ASGTLLIAFV-----------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGV-SVYLAEIATPGRKGFYTSWQSASQQV 164 (434)
T ss_pred HHHHHHHHhC-----------CcHHHHHHHHHHHHHHHHHHhhccccccHHHH-HHHHHhhCCcccchHHHHHHHHHHHH
Confidence 8888877663 1111 12333334444433333333 47889999999999999999888888
Q ss_pred HHHHHHhHHHHH--------HHhhcCChhHHHHH
Q psy7924 406 SVLVVTKFFGDV--------TLLLGGHGAFWIFS 431 (481)
Q Consensus 406 g~~~~~~~~~~~--------~~~~g~~~~~~~~~ 431 (481)
+..+++.+.+.+ .+..||+..|.+..
T Consensus 165 g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~ 198 (434)
T PRK15075 165 AVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC 198 (434)
T ss_pred HHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence 877777766554 24678988887543
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-10 Score=103.03 Aligned_cols=309 Identities=15% Similarity=0.124 Sum_probs=177.0
Q ss_pred HHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccccceeeeeeccc----
Q psy7924 36 MALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS---- 111 (481)
Q Consensus 36 ~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~---- 111 (481)
..+...+.++..|.++||+|||..+........+...+..+.. +| + ++ +. |...+........
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~~-~~---~----~~---~~--~l~g~~~~~~s~~~a~v 137 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQG-YW---F----FL---LL--GLSGGFSAIFSVGFAYV 137 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHHH-HH---H----hh---hc--ccccchhhhhhhhhhhe
Confidence 3677788999999999999999999999998888888877777 33 3 22 22 3332222111111
Q ss_pred -----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHH
Q psy7924 112 -----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLP 186 (481)
Q Consensus 112 -----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 186 (481)
.+.|....++....+ ..+..+++.++ +......+.-..+.+..+..
T Consensus 138 adis~~~~R~~~~gll~~~~--------------------~~~~~~~p~~~---------~~~~~~~~~a~~f~ia~~~~ 188 (463)
T KOG2816|consen 138 ADISSEEERSSSIGLLSGTF--------------------GAGLVIGPALG---------GYLVKFLGIALVFLIAAASG 188 (463)
T ss_pred eeccchhHHHHHHHHHHHHH--------------------HHHHhHHHHHH---------HHHHHhcCchHHHHHHHHHH
Confidence 667777777777766 55555665555 11113455666777777777
Q ss_pred HHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHH
Q psy7924 187 IFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLG 265 (481)
Q Consensus 187 ~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (481)
++..+... ++||+-.- ++.++ ......... ..........+....+ .+..+..+..+.
T Consensus 189 ~~~~~y~~~~l~Esl~~----~~~~~--~~~~~~~~~--------------~~~~~~~~~~~~~~~~-~~~~r~~l~l~l 247 (463)
T KOG2816|consen 189 ILSLLYMLLFLPESLQE----KERSD--ATLRELTPG--------------SLDSSHVADAFQSLTK-VGPDRLLLLLLL 247 (463)
T ss_pred HHHHHHHhhccccccCc----ccccc--ccccccCCC--------------cccchhhhhhhhhhcc-cCCCccchHHHH
Confidence 76666555 68988411 00000 000000000 0000000011111111 111222222222
Q ss_pred HHHHHHhhhhhhhh-HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHH-HHHHHhCChHHHHHHHHHHHHHHHHHHH
Q psy7924 266 VMFIQQFGGINAVV-FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIAT-MIVDRLGRRILLLVSAVIMALSTLTMGY 342 (481)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~~~~~~~~~~ 342 (481)
.............. ...-+....++++. +.+......+....++.++.. .+...+|-|+....+.....+.....++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af 327 (463)
T KOG2816|consen 248 VAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIISQLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAF 327 (463)
T ss_pred HHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHH
Confidence 22221111100000 11112223466766 445566777777788887766 7788889888888888888888888777
Q ss_pred HHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy7924 343 YFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL 420 (481)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 420 (481)
.+..|.......+. .. .....+...+..+-..+++++|++.++...+..+.+.++|.+.+.+...
T Consensus 328 -----------~~~~w~~~~~~v~~-~~-~~~~~pa~~s~~s~~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~ 392 (463)
T KOG2816|consen 328 -----------ATETWMMFAAGVVV-AL-AGIVFPAIRAFASILVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFAL 392 (463)
T ss_pred -----------hccchhhhHHHHHH-Hh-hcchhHHHHhHHHhhcccccccchhhHHHHHHHHhhhhhHHHHHHHHHH
Confidence 33444433333322 22 2233344457778888999999999999999999999999998877653
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-10 Score=105.49 Aligned_cols=119 Identities=19% Similarity=0.137 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch--------hHHHHHHHHHHHHhhcc
Q psy7924 304 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW--------LPLGSLCVFIIVFSLGF 375 (481)
Q Consensus 304 ~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 375 (481)
++..+++++.|+++||+|||+.+..+..+.+++.++.++. ++.. ..++...+.+.+.+...
T Consensus 75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~ 143 (438)
T PRK09952 75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLL-----------PSFSTIGWWAPVLLVTLRAIQGFAVGGEW 143 (438)
T ss_pred HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcC-----------CcHHHHHHHHHHHHHHHHHHHHhhhcccH
Confidence 4467888999999999999999999999999888877663 1111 23333344444444333
Q ss_pred CchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH--------HhhcCChhHHHHHHHH
Q psy7924 376 GPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT--------LLLGGHGAFWIFSVIA 434 (481)
Q Consensus 376 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~ 434 (481)
. ....++.|.+|+++|+...+..+....+|..+++.+...+. +..||+..|.+.++..
T Consensus 144 ~-~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~ 209 (438)
T PRK09952 144 G-GAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLV 209 (438)
T ss_pred H-HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHH
Confidence 3 33478899999999999999888888888888776655443 2468998887766544
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.5e-10 Score=107.32 Aligned_cols=151 Identities=15% Similarity=0.132 Sum_probs=106.0
Q ss_pred hHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhH
Q psy7924 282 TVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLP 360 (481)
Q Consensus 282 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (481)
.+....+.+.+. ..+.....+.+...+..++.|+++||+|||+++..+..+..++.+.+... .+.
T Consensus 26 ~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~-----------~~~--- 91 (393)
T PRK11195 26 AIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG-----------IHP--- 91 (393)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-----------HHH---
Confidence 334456666665 45677778888899999999999999999999999998887776655432 111
Q ss_pred HHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHH
Q psy7924 361 LGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVF 440 (481)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 440 (481)
.+...+.+.+.+ ...|...+++.|.+|+++|+++.|+......++..++|.+.|.+.+.. +...+.+.+...++ ..+
T Consensus 92 ~~~r~l~G~~~a-~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~-~~~~~~i~~~~~~~-~~~ 168 (393)
T PRK11195 92 LLAYGLVGIGAA-AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPH-AEAALAVCALIYLL-AAL 168 (393)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHH
Confidence 233334444433 344555688999999999999999999999999999999999888753 44444444333322 233
Q ss_pred HHHhccCCC
Q psy7924 441 TYILVPETK 449 (481)
Q Consensus 441 ~~~~~~~~~ 449 (481)
....+||.+
T Consensus 169 ~~~~l~~~~ 177 (393)
T PRK11195 169 FNLFIPRLG 177 (393)
T ss_pred HHhcCCCCc
Confidence 345566543
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=109.50 Aligned_cols=164 Identities=13% Similarity=0.048 Sum_probs=108.8
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
+....+.+.+.+++|++. +.+...... .......++.|++.||+|+|+++.++.++..++.++.++.....- .
T Consensus 44 y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i-----~ 117 (591)
T PTZ00207 44 YAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI-----E 117 (591)
T ss_pred HHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-----c
Confidence 455567788888888886 444444332 233345667899999999999999999999999988876311000 1
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIA 434 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 434 (481)
.+.+...+...+.+.+.+...... ...+.+.+| +.||++.|+......+|+++.+.+...+.. .+++..+++.+++.
T Consensus 118 ~s~~~l~l~r~l~G~G~~~~~~~~-~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l~vl~ 194 (591)
T PTZ00207 118 GSVVRLSVYNGLMTLGCMLFDLGA-VVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFLMSFA 194 (591)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHH
Confidence 223334444444444433322233 355678887 789999999999999999876665554544 34666777788777
Q ss_pred HHHHHHHHHhccCC
Q psy7924 435 ALGAVFTYILVPET 448 (481)
Q Consensus 435 ~~~~~~~~~~~~~~ 448 (481)
.+.+++...+++..
T Consensus 195 ~vv~ll~~~~vr~p 208 (591)
T PTZ00207 195 LVVGILAIVFMRLP 208 (591)
T ss_pred HHHHHHHHhheeCC
Confidence 77777776666543
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=104.86 Aligned_cols=154 Identities=12% Similarity=0.134 Sum_probs=116.3
Q ss_pred hhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy7924 277 AVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355 (481)
Q Consensus 277 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
.+.+++-..+++.+... --+......-.+.++.-++.+++.+|+|+-+++..++....+=.+.+.+. .
T Consensus 389 lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L-----------~ 457 (618)
T KOG3762|consen 389 LVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL-----------Q 457 (618)
T ss_pred HHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh-----------c
Confidence 33344444556655443 33555666667788999999999999999999998888887777666552 4
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHH-HHHHHHHHHhHHHHHHHhhcCChhHHHHHHHH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLF-NWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIA 434 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~-~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 434 (481)
++|..+.+=++-++..+..+..+. +|++...|++.|+++.++.... ..+|-.+|..+.|.+.+..|-+..|.++++.+
T Consensus 458 n~W~vLPieilqgit~aliWaa~~-sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAc 536 (618)
T KOG3762|consen 458 NPWMVLPIEILQGITHALIWAAII-SYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIAC 536 (618)
T ss_pred CchheeeHHHHHHHHHHHHHHHHH-HHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHH
Confidence 566666666777777777777666 8999999999999999988665 45778888889999999999888898888877
Q ss_pred HHHHHHHH
Q psy7924 435 ALGAVFTY 442 (481)
Q Consensus 435 ~~~~~~~~ 442 (481)
++..+...
T Consensus 537 l~~l~~~~ 544 (618)
T KOG3762|consen 537 LVTLALFI 544 (618)
T ss_pred HHHHHHHH
Confidence 76665543
|
|
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.5e-10 Score=103.52 Aligned_cols=135 Identities=11% Similarity=-0.025 Sum_probs=101.5
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++++.+. +.+.....+.++..++.++.|+++||+|||+.+..+..+..++.+++.....
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------- 113 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 4556667888888899987 6678888899999999999999999999999999999999988876532110
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT 418 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 418 (481)
.++.+...+...+.+.+.+....... .++.|..|++.|....++.+....+|..+++.+.+.+.
T Consensus 114 a~~~~~ll~~r~l~G~g~g~~~~~~~-~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 IMNYTLFLVGLFIIAAGLGCLETAAN-PFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhHH-HHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334445555666666555554444 66678777777767889999999999999988866543
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.8e-10 Score=103.27 Aligned_cols=137 Identities=13% Similarity=0.036 Sum_probs=103.7
Q ss_pred hhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy7924 273 GGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS 351 (481)
Q Consensus 273 ~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (481)
..........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++..++......
T Consensus 20 ~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~--------- 90 (381)
T PRK03633 20 LAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL--------- 90 (381)
T ss_pred HhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 334556667788888888886 6788888899999999999999999999999999998888887776655
Q ss_pred CccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy7924 352 DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL 421 (481)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 421 (481)
.++.+...+...+.+.+.+... +.......+..|+++|+++.+......++|..++|.+.+.+.+..
T Consensus 91 --~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 157 (381)
T PRK03633 91 --MVGFWSWLAWRFVAGIGCAMIW-VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTEL 157 (381)
T ss_pred --hccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 2333444444455554444332 222244567788899999999999999999999999988776653
|
|
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.5e-11 Score=103.04 Aligned_cols=146 Identities=17% Similarity=0.239 Sum_probs=124.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhh
Q psy7924 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL 373 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (481)
+.++......+.+++.+++.|.+.||+|+|..+++++.++....+++++ .+..+..++.-.+.+.+.+.
T Consensus 107 ~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf-----------g~sy~~l~vAR~LQgvgsA~ 175 (464)
T KOG3764|consen 107 QIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF-----------GNSYPMLFVARSLQGVGSAF 175 (464)
T ss_pred chhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH-----------cchhHHHHHHHHHhhhhHHH
Confidence 4567888888999999999999999999999999999999999999988 44555667777777777666
Q ss_pred ccCchhhhhhcccCcccc-hhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7924 374 GFGPIPWMLVGEIFPSQI-KGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGK 451 (481)
Q Consensus 374 ~~~~~~~~~~~e~~p~~~-r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (481)
....- .+++++.||.+. |++++|+.-.+..+|-.++|++.|.+++..|++.+|.+.+.++++-..+.++.++.++.+
T Consensus 176 ~~tsg-lamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~~ 253 (464)
T KOG3764|consen 176 ADTSG-LAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEMD 253 (464)
T ss_pred HHhhh-HHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCccccC
Confidence 55444 488899999775 699999999999999999999999999999999999999999999888887776654444
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.5e-10 Score=102.90 Aligned_cols=159 Identities=10% Similarity=0.059 Sum_probs=97.4
Q ss_pred hhHhhHHHhhhcCCCC-chhHHHHHHHHHH-HHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 278 VVFYTVKIFKDAGSSL-NPNLCTIIVGTIM-MVTTWIATMIVDRLGRRILLL-VSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 278 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~-~~~~~~~g~l~d~~grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.....+++.++.|.+. +.+.......+.. ..+.+..++ .||+|||+.++ .+.+...++.....+ .
T Consensus 35 ~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~-----------~ 102 (393)
T PRK15011 35 TPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW-----------N 102 (393)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH-----------h
Confidence 3444555667778876 4455544444544 445555555 99999988654 444444444443333 1
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchh--hHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKG--IAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSV 432 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~--~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 432 (481)
++.+...+...+.+.. .....+....+..|..|++.|. ...++.+....+|..++|++.+.+.+..||+..|.+.+.
T Consensus 103 ~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~ 181 (393)
T PRK15011 103 RNYFVLLFVGVFLSSF-GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAV 181 (393)
T ss_pred hHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHH
Confidence 2222222222222222 2233444445666666655443 334777888899999999999999999999999988887
Q ss_pred HHHHHHHHHHHhccCCC
Q psy7924 433 IAALGAVFTYILVPETK 449 (481)
Q Consensus 433 ~~~~~~~~~~~~~~~~~ 449 (481)
..++..+...+..||.+
T Consensus 182 ~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 182 AFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHhhcCccC
Confidence 77777776666677654
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.4e-11 Score=113.03 Aligned_cols=153 Identities=15% Similarity=0.118 Sum_probs=111.9
Q ss_pred hhHHHhhhcCCC---C-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q psy7924 281 YTVKIFKDAGSS---L-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356 (481)
Q Consensus 281 ~~~~~~~~~g~~---~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
+.+.+.++.+.+ . +.+.......++..++.++.|+++||+|||+.+..+.++..++.+...+ ..+
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~-----------~~~ 179 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF-----------SPN 179 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH-----------ccc
Confidence 445666777776 4 5567888888999999999999999999999999998888888777655 223
Q ss_pred chhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHH
Q psy7924 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAAL 436 (481)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 436 (481)
.+...+...+.+++.+. ..+....++.|.+|++.|+.+.++......+|..+++.+...+.+ |++.+.+.++..++
T Consensus 180 ~~~~~~~r~l~G~~~~~-~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~---wr~~~~~~~i~~~~ 255 (505)
T TIGR00898 180 YTVFLVFRLLVGMGIGG-IWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPD---WRWLQLAVSLPTFL 255 (505)
T ss_pred HHHHHHHHHHHHhhccc-hHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHHHHHHHH
Confidence 34444444444444332 344556889999999999999999988888888888877654433 78888877766665
Q ss_pred HHHHHHHhccCCC
Q psy7924 437 GAVFTYILVPETK 449 (481)
Q Consensus 437 ~~~~~~~~~~~~~ 449 (481)
..+.. +++||+.
T Consensus 256 ~~~~~-~~~~esp 267 (505)
T TIGR00898 256 FFLLS-WFVPESP 267 (505)
T ss_pred HHHHH-HhcCCCh
Confidence 55444 6677753
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.2e-10 Score=103.38 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=96.1
Q ss_pred hhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc
Q psy7924 277 AVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 355 (481)
Q Consensus 277 ~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (481)
...+...++.++.|++. +.+.......+...+++++.|+++||+|||+.+..+..+.+++.......... ..
T Consensus 29 ~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~-------~~ 101 (420)
T PRK09528 29 WFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFA-------PL 101 (420)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHH-------HH
Confidence 34444555555688887 67888999999999999999999999999999877655554443322111000 00
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCc--ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP--SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
..........+.+...+....... ....+..+ .+.++...|.......+|..++|.+.+.+.+ .+|+..|++.++.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~-~~~~~~f~~~~~~ 179 (420)
T PRK09528 102 LQYNILLGAIVGGIYLGFGFLAGA-GAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFN-INPQINFWLGSGS 179 (420)
T ss_pred HHHHHHHHHHHHHHHhhhhhccch-hhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHh-cCchHhHHHHHHH
Confidence 000011111111111222221111 11112212 2345677888888899999999999988776 4788888777766
Q ss_pred HHHHHHHHHHhccC
Q psy7924 434 AALGAVFTYILVPE 447 (481)
Q Consensus 434 ~~~~~~~~~~~~~~ 447 (481)
+++..++.+...++
T Consensus 180 ~~~~~~~~~~~~~~ 193 (420)
T PRK09528 180 ALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHHHHhccccc
Confidence 66655554443333
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=99.59 Aligned_cols=244 Identities=15% Similarity=0.066 Sum_probs=145.1
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGS 88 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 88 (481)
.|.+-.+-+ ++|.++.|++.+...-+...++..++.|.++||+|||+.-+...++..++++ +-..+++. .+
T Consensus 54 GpY~Y~LY~---~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl-~k~~~~~~--~L--- 124 (354)
T PF05631_consen 54 GPYLYALYE---SYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCL-TKHSSNYP--VL--- 124 (354)
T ss_pred cchhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHhccccH--HH---
Confidence 344444455 7899999999999999999999999999999999999999999999998885 44557788 88
Q ss_pred hHHHHhhccccccceeeeeeccc-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhh
Q psy7924 89 PVVGNLVDTVGRKNTMLLLAVPS-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLA 163 (481)
Q Consensus 89 ~~~~r~~~~~G~~~~~~~~~~~~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~ 163 (481)
+++|++. |++.......--. .++|+.-........+.... . ...+-.+.+..++
T Consensus 125 -~~GRvlg--GiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf-----------~-~n~~vAI~aGv~a------ 183 (354)
T PF05631_consen 125 -LLGRVLG--GIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATF-----------F-GNGVVAIGAGVVA------ 183 (354)
T ss_pred -HHHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHH-----------H-HhHHHHHHHhHHH------
Confidence 9999999 9988776655444 22233221111111100000 0 0011111222222
Q ss_pred hHhhccchhh--HHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhh
Q psy7924 164 QVIKERKFEA--SVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKE 240 (481)
Q Consensus 164 ~~~~~~~~~~--~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (481)
....+.. +-..+|....+..++..+++. ..+|.+.- ..+ .. +..
T Consensus 184 ---~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~------~~~--------------~~----------~~~ 230 (354)
T PF05631_consen 184 ---NVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD------TSS--------------SS----------SLS 230 (354)
T ss_pred ---HHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC------ccc--------------cc----------chH
Confidence 0000112 235667766666666555554 34554210 000 00 000
Q ss_pred ccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7924 241 RSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRL 320 (481)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~ 320 (481)
+.-+...+.+.++ ++++.......+.....+..+..|.|.+..+ +-+..-+.+...+.++.++|+.+..++..+-
T Consensus 231 ~~~~~a~~~i~~d----~ril~LG~~qslFE~smy~FVflWtPaL~~~-~~~~P~GlIFssFM~a~MlGS~lf~~l~s~~ 305 (354)
T PF05631_consen 231 GSFREAWRAILSD----PRILLLGLIQSLFEGSMYLFVFLWTPALDPD-DEELPLGLIFSSFMVAMMLGSSLFSRLLSKS 305 (354)
T ss_pred HHHHHHHHHHHcC----chhHHHHHHHHHHHHHHHHheeeeeceecCC-CCCCCchHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0001123344444 3455666667777777777888888887622 1222457788888889999998887666543
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.9e-10 Score=102.67 Aligned_cols=187 Identities=13% Similarity=0.122 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH----HhCChHHHHHH-HHHH
Q psy7924 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD----RLGRRILLLVS-AVIM 333 (481)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~~~~-~~~~ 333 (481)
++.........++. +.....+.+.+.++.|.+. ..+.......+.+.+..++.|+++| |+|||+.++.. .+..
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 44444444555554 3444445555677888877 5667788888999999999999999 59999988765 4444
Q ss_pred HHHHHHHHHHHhhc----CCCCCccccc---hhHHHHHHHHHHHHhhccCchhhhhhcccCcccch--hhHHHHHHHHHH
Q psy7924 334 ALSTLTMGYYFYLK----NSGSDVSNIG---WLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIK--GIAVSIACLFNW 404 (481)
Q Consensus 334 ~~~~~~~~~~~~~~----~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r--~~~~g~~~~~~~ 404 (481)
.++..++....... +..+. .... +..++...+..+..+....+.. ++++|..|+++| +.+.++.+...+
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~-~~~~~~i~~~~i~~~lld~~~n~~~~p~r-ALiaDl~p~~~~~~~~a~~~~~~~~~ 162 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDK-KTKPRAIIVFVVGFWILDVANNMLQGPCR-AFLADLTGGDARRTRIANAYFSFFMA 162 (477)
T ss_pred HHHHHHHHhCchhhhhccccccc-cchhHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccccCchhHHHHHHHHHHHHHHH
Confidence 44444443321100 00000 0111 1222333333344444444554 889999998865 578898899999
Q ss_pred HHHHHHHhHHHHH--HHhh-------------cCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 405 VSVLVVTKFFGDV--TLLL-------------GGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 405 ~g~~~~~~~~~~~--~~~~-------------g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
+|+.+++.+.+.. .+.. +.+..|.+.+++.++..++..+..||..
T Consensus 163 lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 163 IGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 9999998887653 1211 3456777777777777777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-10 Score=103.12 Aligned_cols=162 Identities=17% Similarity=0.152 Sum_probs=97.6
Q ss_pred hHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q psy7924 279 VFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIG 357 (481)
Q Consensus 279 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (481)
.+..+++.++.|.+. +.+.......+...+++++.|+++||+|||+.+..+....++............... ....
T Consensus 23 ~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 99 (396)
T TIGR00882 23 PFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQ---SNIL 99 (396)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HHHH
Confidence 334445555678887 667888899999999999999999999999999877665554433322211000000 0001
Q ss_pred hhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 358 WLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
....+...+.+.+.+...... ..+..|..+ .++...|.....+++|..++|.+.+.+.+ .+|+..|++.+.+..+.
T Consensus 100 ~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~-~~~~~~f~~~~~~~~~~ 175 (396)
T TIGR00882 100 VGAIVGGLYLGFVFSAGAGAI-EAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFS-IDPQIVFWLGSGFALIL 175 (396)
T ss_pred HHHHHHHHHHHHHhccchhhH-HHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhc-cCchHHHHHHHHHHHHH
Confidence 111122222333333222222 244444322 23456677778889999999999886654 58999998887777766
Q ss_pred HHHHHHhccC
Q psy7924 438 AVFTYILVPE 447 (481)
Q Consensus 438 ~~~~~~~~~~ 447 (481)
.++.+...|+
T Consensus 176 ~~~~~~~~~~ 185 (396)
T TIGR00882 176 MLLLMFAKPK 185 (396)
T ss_pred HHHHHHhCCC
Confidence 6555444443
|
|
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=104.59 Aligned_cols=149 Identities=15% Similarity=0.135 Sum_probs=124.4
Q ss_pred CCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHH
Q psy7924 290 GSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFI 368 (481)
Q Consensus 290 g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (481)
..+. +.+.+......+.+++.+..+++.||+|-|+++..+.++.+++.++..+.. ....+..++.-.+.+
T Consensus 69 ~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa---------~~~~~~~~~~R~lqG 139 (466)
T KOG2532|consen 69 DWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAA---------SIGFYLLLVLRFLQG 139 (466)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH---------HhcchhhHHHHHHhH
Confidence 3444 556788888899999999999999999999999999999999988887753 223345566666777
Q ss_pred HHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh-hcCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 369 IVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL-LGGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 369 ~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
++.+..+..+. .+.+...|+++|++..++.....++|.++..++.|.+.+. .||+..|++.+++.++..++.+++..+
T Consensus 140 l~~g~~~pa~~-~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d 218 (466)
T KOG2532|consen 140 LGQGVLFPAIG-SILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSD 218 (466)
T ss_pred HHHhHHHhhhh-ceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcC
Confidence 77776666665 7888999999999999999999999999999999999998 999999999999999988887766654
Q ss_pred C
Q psy7924 448 T 448 (481)
Q Consensus 448 ~ 448 (481)
+
T Consensus 219 ~ 219 (466)
T KOG2532|consen 219 S 219 (466)
T ss_pred C
Confidence 3
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-09 Score=100.23 Aligned_cols=161 Identities=15% Similarity=0.080 Sum_probs=105.2
Q ss_pred hhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHH-HHHHHHHHHHHHHHHHHHhhcCCC
Q psy7924 278 VVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-----GRRILL-LVSAVIMALSTLTMGYYFYLKNSG 350 (481)
Q Consensus 278 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 350 (481)
.....|.+.++.|.+. +.+..... .+...+ .++.|+++||+ ||||.+ ..+.+..+++...+.+.. +
T Consensus 7 ~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~---~-- 79 (356)
T TIGR00901 7 VGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLV---P-- 79 (356)
T ss_pred HHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCC---c--
Confidence 3445677888888887 44444332 333333 88999999998 888864 555666666555554320 0
Q ss_pred CCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc--------
Q psy7924 351 SDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-------- 422 (481)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-------- 422 (481)
....+.......+.+.+.+ ...+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 80 ---~~~l~~l~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~ 155 (356)
T TIGR00901 80 ---STDLPLLAGLAFLIAFFSA-TQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITL 155 (356)
T ss_pred ---chhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Confidence 1112222222223322222 2234445788999999999999999999999999999999988888888
Q ss_pred CChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 423 GHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
|+..|.+.++...+..+...+..||++
T Consensus 156 wr~~f~i~ai~~l~~~~~~~~~~~e~~ 182 (356)
T TIGR00901 156 WGYIFFWTALLILPGLLVTLFLAKEPQ 182 (356)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 998998877766665554444456643
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=110.52 Aligned_cols=187 Identities=14% Similarity=0.052 Sum_probs=125.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q psy7924 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL 338 (481)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 338 (481)
+++.+......+...........+.+.++++++. +.+.+...+.++..++.++.+++.||.+||+.+..+.++.+++.+
T Consensus 34 ~~~~~~~~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~l 113 (633)
T TIGR00805 34 FSLLLTCAQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSF 113 (633)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHH
Confidence 3333333444443333444555677777888887 667888889999999999999999999999999999999999988
Q ss_pred HHHHHHhhcCCCC---------------------C----------------cc--ccch-hHHHHHHHHHHHHhhccCch
Q psy7924 339 TMGYYFYLKNSGS---------------------D----------------VS--NIGW-LPLGSLCVFIIVFSLGFGPI 378 (481)
Q Consensus 339 ~~~~~~~~~~~~~---------------------~----------------~~--~~~~-~~~~~~~~~~~~~~~~~~~~ 378 (481)
+.++..+...... . .. ...+ ..++.-++.+++.+ ...+.
T Consensus 114 l~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~-~~~~~ 192 (633)
T TIGR00805 114 LLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGAT-PIFPL 192 (633)
T ss_pred HHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCC-cchhc
Confidence 8766422110000 0 00 0012 22233343433333 33345
Q ss_pred hhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh----------------------cCChhHHHHHHHHHH
Q psy7924 379 PWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL----------------------GGHGAFWIFSVIAAL 436 (481)
Q Consensus 379 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~----------------------g~~~~~~~~~~~~~~ 436 (481)
..+++.|.+|++.|+...++.+....+|..+++.+.+.+.+.. +|+..|.+.+++.++
T Consensus 193 ~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~g~l~~l 272 (633)
T TIGR00805 193 GISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLICGGVALL 272 (633)
T ss_pred CchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999999999988877542 144556666666666
Q ss_pred HHHHHHHhccCC
Q psy7924 437 GAVFTYILVPET 448 (481)
Q Consensus 437 ~~~~~~~~~~~~ 448 (481)
.++.. +..|++
T Consensus 273 ~~v~l-~~~p~~ 283 (633)
T TIGR00805 273 TSIPF-FFFPKA 283 (633)
T ss_pred HHHHH-HhCccc
Confidence 55544 445554
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=98.21 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=104.9
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.......|.+.+++|.+. +.+.......++..++.++.|+++||+|||+.+..+.+...++.+.. . .
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~-----------~ 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S-----------A 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H-----------h
Confidence 344556788888999887 66788888999999999999999999999999998887766665544 2 1
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc--CChhHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG--GHGAFWIFSV 432 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g--~~~~~~~~~~ 432 (481)
++.+..++...+.+.+.+...... ...+.|.+| ++|+++.++.+....+|..+++.+.+.+.+..+ |+..|...++
T Consensus 85 ~~~~~l~~~~~~~g~g~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~ 162 (355)
T TIGR00896 85 PGTALLFAGTALIGVGIAIINVLL-PSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWAL 162 (355)
T ss_pred ccHHHHHHHHHHHHHHHHHHhccc-hHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 223333444444444444433333 356678776 679999999999999999999999888877653 6666665554
Q ss_pred HH
Q psy7924 433 IA 434 (481)
Q Consensus 433 ~~ 434 (481)
+.
T Consensus 163 ~~ 164 (355)
T TIGR00896 163 PA 164 (355)
T ss_pred HH
Confidence 43
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.8e-09 Score=97.94 Aligned_cols=144 Identities=19% Similarity=0.168 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccC
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (481)
.....+.+++++|+++.++++||+|||..+.++.++..++.++...... .+.....++.-++.+...+....
T Consensus 64 ~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~--------~~~~e~li~GR~i~Gl~~gl~~~ 135 (485)
T KOG0569|consen 64 LIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKS--------APSFEMLILGRLIVGLACGLSTG 135 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHHHHHhHHHHH
Confidence 3566677889999999999999999999999998888888777766432 23445666677777766666665
Q ss_pred chhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHH-HHHHHhh-cCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFF-GDVTLLL-GGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 377 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~-~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
..+ .++.|..|++.||....+......+|..++..+. ..++.+. .|...+... .+..+...+...+.||+.+
T Consensus 136 ~~p-myl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~-~i~~~~~l~~l~~~PESPk 209 (485)
T KOG0569|consen 136 LVP-MYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFP-LIPALLQLALLPFLPESPK 209 (485)
T ss_pred HHH-HHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHH-HHHHHHHHHHHhcCCCCcc
Confidence 555 8899999999999998888888888887775443 3333222 243333333 3333444455567898743
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.7e-09 Score=98.65 Aligned_cols=163 Identities=15% Similarity=0.181 Sum_probs=111.1
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-----CChH-HHHHHHHHHHHHHHHHHHHHhhc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-----GRRI-LLLVSAVIMALSTLTMGYYFYLK 347 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~-~~~~~~~~~~~~~~~~~~~~~~~ 347 (481)
+.......|.++++.|++. +.+........ .+..+++|+++||+ |||| .+..+.++.+++...+.+..
T Consensus 15 ~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~--- 89 (402)
T PRK11902 15 LALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCP--- 89 (402)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhcC---
Confidence 4555566788888889987 55555444333 58889999999999 7765 67777777776666654420
Q ss_pred CCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh-hcCChh
Q psy7924 348 NSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL-LGGHGA 426 (481)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~-~g~~~~ 426 (481)
. ..+.+.......+.+.+ .....+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+. .||+..
T Consensus 90 ~-----~~~~~~l~~~~~~~~~~-~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~ 163 (402)
T PRK11902 90 P-----HAALWPLAGLAVLVAFL-SASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNT 163 (402)
T ss_pred c-----cchHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHH
Confidence 0 11222233332333333 3334444458889999999999999999998899999999988888875 489999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCC
Q psy7924 427 FWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
|++.+++..+..+. .+..||++
T Consensus 164 f~i~a~~~l~~~l~-~~~~~e~~ 185 (402)
T PRK11902 164 YLLMAGLMLAGALT-TLWAPEPE 185 (402)
T ss_pred HHHHHHHHHHHHHH-HHhcCCCc
Confidence 98877766654443 34556653
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7.7e-10 Score=99.70 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=126.2
Q ss_pred HHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcC----CCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-CC
Q psy7924 249 QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAG----SSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-GR 322 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-gr 322 (481)
..+++| +.+...+..-+.--+++|..-....-|+..+.+ +++ ++......+....-+..+++|+++||+ |+
T Consensus 15 ~~f~~P---r~l~~if~vE~WERFsyYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~ 91 (498)
T COG3104 15 KFFGQP---RGLYLIFFVELWERFSYYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGT 91 (498)
T ss_pred ccCCCC---chHHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 455555 555556666666666655555444445554444 766 344455566666677888999999995 99
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc--chhhHHHHHH
Q psy7924 323 RILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ--IKGIAVSIAC 400 (481)
Q Consensus 323 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~--~r~~~~g~~~ 400 (481)
|+.+..+.++..++.++++... ........+.+.+...+.+..=... ..++.|.+|++ .|..+.++.+
T Consensus 92 ~~tI~lGail~~iGh~~L~~~~---------~~~~~gl~i~L~~I~iG~Gl~K~Ni-S~llg~ly~~~DprrD~gFt~fY 161 (498)
T COG3104 92 RRTIVLGAILMAIGHLVLAISS---------VSGPGGLYIGLALIIVGTGLFKPNI-SSLLGELYPKDDPRRDGGFTLFY 161 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhccc---------cccccHHHHHHHHHHhccccccccH-HHHHHHhcCCCCcccCCCccEEE
Confidence 9999999999999999987731 0123344444444444444433344 47888999764 3677788888
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy7924 401 LFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYI 443 (481)
Q Consensus 401 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (481)
+..++|+.++|.+.+++.+..||+..|...++-..++.+..+.
T Consensus 162 ~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~ 204 (498)
T COG3104 162 MGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL 204 (498)
T ss_pred EEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999998777666665555443
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.9e-09 Score=111.28 Aligned_cols=143 Identities=16% Similarity=0.086 Sum_probs=95.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhcc
Q psy7924 296 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375 (481)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
++......+..++.+++.|+++||+|||+++........+.......... ..+.+.+++...+.+.+.+. .
T Consensus 55 ~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~--------~~s~~~l~~~~~l~gi~~a~-~ 125 (1140)
T PRK06814 55 TLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFH--------LNSVPLLFAALFLMGIHSAL-F 125 (1140)
T ss_pred HHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHh-h
Confidence 34555666778899999999999999999764322222221111111110 12334445555555544443 4
Q ss_pred CchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCC
Q psy7924 376 GPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 376 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
.+...+++.+.+|++.|+.++|+.++...+|..++|.+.|.+.+..+|+..| +..++..+..++..+.+|++
T Consensus 126 ~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 126 GPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILV-ALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred chHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHH-HHHHHHHHHHHHHHhhCCCC
Confidence 4566688999999999999999999999999999999999999988887777 44444444444444555554
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-09 Score=98.87 Aligned_cols=162 Identities=17% Similarity=0.217 Sum_probs=106.8
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-----CChHH-HHHHHHHHHHHHHHHHHHHhhcC
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-----GRRIL-LLVSAVIMALSTLTMGYYFYLKN 348 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~-~~~~~~~~~~~~~~~~~~~~~~~ 348 (481)
.......|...++.|.+. +.+.. ...... .+..+++++++||+ |||+. +..+.+..+++...+++..
T Consensus 29 ~~~~~~l~~~l~~~g~~~~~ig~~-~~~~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~---- 102 (491)
T PRK11010 29 ALTSGTLQAWMTVENIDLKTIGFF-SLVGQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLE---- 102 (491)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH-HHHHHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHcC----
Confidence 344445666677777765 33332 222222 26889999999999 98875 5566666666665554420
Q ss_pred CCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH-hhcCChhH
Q psy7924 349 SGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL-LLGGHGAF 427 (481)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~ 427 (481)
+..+.+.......+.+.+.+ ...+...++..|.+|+++|+++.++......+|..+++.+.+.+.+ ..||+..|
T Consensus 103 ----~~~~l~~l~~~~~l~~~~~a-~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f 177 (491)
T PRK11010 103 ----PGTQLRWLAALAVVIAFCSA-SQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMY 177 (491)
T ss_pred ----CcchHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHH
Confidence 01122233333334444333 3334445888999999999999999999999999999999888888 46999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCC
Q psy7924 428 WIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
++.++..++..+.. +..||+.
T Consensus 178 ~i~a~l~ll~~l~~-~~~~e~~ 198 (491)
T PRK11010 178 WLMAALLIPCIIAT-LLAPEPT 198 (491)
T ss_pred HHHHHHHHHHHHHH-HhcCCCc
Confidence 98887766654444 3456653
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.6e-09 Score=98.38 Aligned_cols=179 Identities=16% Similarity=0.196 Sum_probs=118.0
Q ss_pred HHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Q psy7924 249 QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLL 327 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 327 (481)
..+|+|.++ .++..-.+.....+.......++ ..+..-++ ..+.......+-.++.++++|.++||++||++++
T Consensus 5 aplr~~~Fr-~lw~a~~iS~lG~~~~~va~~wl----v~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrrili 79 (524)
T PF05977_consen 5 APLRNRNFR-RLWIAQLISNLGDWMQTVALAWL----VTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRILI 79 (524)
T ss_pred ccccCchHH-HHHHHHHHHHHHHHHHHHHHHHH----HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHH
Confidence 345666443 34444444433333322333332 32322222 4455666666777889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHH
Q psy7924 328 VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSV 407 (481)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~ 407 (481)
.+-++.++..+.+.+..... ..+.+.+++..++.+.+... ..|...+.++|++|+++...+.++.....++..
T Consensus 80 ~~~~~~~~~~~~L~~l~~~~------~~~~~~Ll~~~fl~g~~~a~-~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar 152 (524)
T PF05977_consen 80 LSQLLRALVALLLAVLAFFG------LLSPWLLLILTFLLGIGSAF-FNPAWQAIIPELVPKEDLPAANALNSISFNIAR 152 (524)
T ss_pred HHHHHHHHHHHHHHHHHHhC------cCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH
Confidence 99888777666665543222 12334444444444444333 345556899999999999999999999999999
Q ss_pred HHHHhHHHHHHHhhcCChhHHHHHHHHHHHHH
Q psy7924 408 LVVTKFFGDVTLLLGGHGAFWIFSVIAALGAV 439 (481)
Q Consensus 408 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 439 (481)
.+||.+.|.+....|....|.+-++..++...
T Consensus 153 ~iGPalgG~Lva~~G~~~~f~inalsfl~~i~ 184 (524)
T PF05977_consen 153 IIGPALGGILVAFFGAAAAFLINALSFLISIL 184 (524)
T ss_pred hccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888776655544433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.1e-09 Score=100.12 Aligned_cols=140 Identities=21% Similarity=0.234 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhcc
Q psy7924 296 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375 (481)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
++......++..+++++.|+++|++|||+.+..+.++..++.++.+. ..+.....+.-++.+++.+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~-----------a~~~~~l~~GR~l~G~g~G~~~ 160 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL-----------APSWYQLIVGRILTGLGVGGAS 160 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-----------hhhHHHHHHHHHHhccchhhhh
Confidence 57888888999999999999999999999999999999999999887 3455667777778877777666
Q ss_pred CchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh--cCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 376 GPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL--GGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 376 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
...+ .+.+|+.|++.||...+..+....+|..++ .+.+...++. +|+..+.+..+.+++..+. .++.||+.
T Consensus 161 ~~~p-iy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp 233 (513)
T KOG0254|consen 161 VLAP-VYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESP 233 (513)
T ss_pred hcch-hhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCCh
Confidence 5555 899999999999999999998888776666 5556555543 7887777777766666666 67778763
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.6e-09 Score=101.96 Aligned_cols=160 Identities=19% Similarity=0.223 Sum_probs=124.9
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
......+.+.+.++++.+. +..++..+...+..+..++.+.+.||+|.|++.+.+.++..+++++..+.
T Consensus 62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~---------- 131 (509)
T KOG2504|consen 62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA---------- 131 (509)
T ss_pred hheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 3344455666777777666 46777777778888889999999999999999999999999999988774
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
.+.....+..-.+.+.+.++.+.|.. +.+...| +++|+.++|+......+|.++.|.+...+.+..||+..+.+++.+
T Consensus 132 ~~i~~l~lt~gvi~G~G~~~~~~pai-viv~~YF-~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~~~~~ 209 (509)
T KOG2504|consen 132 TSLWQLYLTFGVIGGLGLGLIYLPAV-VILGTYF-EKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLIFGGI 209 (509)
T ss_pred hhHHHHHHHHHHHhhccchhhhcchh-hhhhhHh-HHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 22223444445555666666666665 5555444 578999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHhcc
Q psy7924 434 AALGAVFTYILVP 446 (481)
Q Consensus 434 ~~~~~~~~~~~~~ 446 (481)
.+-.++......|
T Consensus 210 ~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 210 SLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHHHcCC
Confidence 8777777666655
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.8e-11 Score=91.87 Aligned_cols=129 Identities=19% Similarity=0.207 Sum_probs=100.1
Q ss_pred HHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccccceeeeeeccc-
Q psy7924 33 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS- 111 (481)
Q Consensus 33 ~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~- 111 (481)
.+.+.++..++.++.|++.||+|||+.+..+..+..++.+.....++.+ .+ .+.+++. |++.+...+....
T Consensus 4 ~~~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~--g~~~~~~~~~~~~~ 75 (141)
T TIGR00880 4 LAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNIT--VL----IIARFLQ--GFGAAFALVAGAAL 75 (141)
T ss_pred EEeehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHhccHH--HH----HHHHHHH--HHHHHHHHHhHHHH
Confidence 4556788899999999999999999999999999999988888888888 77 8888998 8877665544433
Q ss_pred ------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHH
Q psy7924 112 ------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALL 185 (481)
Q Consensus 112 ------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~ 185 (481)
+++|++..+...... .+|..+++.+. +...+..+|++.+++.+..
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 126 (141)
T TIGR00880 76 IADIYPPEERGVALGLMSAGI--------------------ALGPLLGPPLG---------GVLAQFLGWRAPFLFLAIL 126 (141)
T ss_pred HHHHCChhhhhHHHHHHHHhH--------------------HHHHHHhHHhH---------HHHhcccchHHHHHHHHHH
Confidence 567888888888887 77777777666 2222456799999888877
Q ss_pred HHHHHHHHhc-cCC
Q psy7924 186 PIFFVGLMLL-MPE 198 (481)
Q Consensus 186 ~~~~~~~~~~-~~e 198 (481)
.++..+...+ .||
T Consensus 127 ~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 127 ALAAFILLAFLLPE 140 (141)
T ss_pred HHHHHHHHhhcCCC
Confidence 7766655554 455
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.2e-08 Score=108.82 Aligned_cols=130 Identities=13% Similarity=0.175 Sum_probs=91.2
Q ss_pred hHHHhhhcCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch
Q psy7924 282 TVKIFKDAGSSLN---PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 358 (481)
Q Consensus 282 ~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (481)
.+.+...++.+.. .++....+.+...++++++|+++||+|||+++..+.++..+..++..+... ....+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~--------~~~~~ 104 (1146)
T PRK08633 33 QNTLIKAYDGSEQVILTAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYY--------LGWFW 104 (1146)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHH--------HccHH
Confidence 3344444444432 244566677778899999999999999999998887766555544433211 12233
Q ss_pred hHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy7924 359 LPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL 420 (481)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 420 (481)
..++..++.+++.+. ..+...++++|.+|++.|++++|+......+|..+++.+.+.+.+.
T Consensus 105 ~l~~~r~l~G~~~~~-~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 105 LAFAVTFLLGAQSAI-YSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHHHHHHHHHHHHHh-hchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444555544443 3445558899999999999999999999999999999999988776
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=3e-09 Score=102.86 Aligned_cols=140 Identities=23% Similarity=0.283 Sum_probs=108.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhh
Q psy7924 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL 373 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (481)
.......++.++..+|+++.|.++||+|||+++..+.++..++.+..++ ..+.+..++.-++.+++ ..
T Consensus 119 ~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~-----------a~~~~~~~~~Rfl~G~~-~~ 186 (521)
T KOG0255|consen 119 LVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF-----------APNYWMFLIFRFLSGFF-GS 186 (521)
T ss_pred HHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH-----------hCcHHHHHHHHHHHHhh-cc
Confidence 3455777888899999999999999999999999999999999877766 34445555555555444 44
Q ss_pred ccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 374 GFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 374 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
+.....+.+..|.++++.|+.+..+ ......++.+++...+.+.. +|++.+++......+..++ +++.||.+
T Consensus 187 ~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~--~Wr~~~~~~~~~~~~~~~~-~~l~~Es~ 258 (521)
T KOG0255|consen 187 GPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITR--DWRWLFWIISIPSGLFLLL-WFLPPESP 258 (521)
T ss_pred chhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHH-HHccCcCh
Confidence 4445566888999999999999999 88888889999998888877 7888888777766665554 44555653
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=93.67 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=98.3
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHHHHHHHhhcCCCCC
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM-ALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 352 (481)
+.....+.|.+.++.|.+. +.+.......+...++.++.+.++||+||+.......... .+..+.+...
T Consensus 20 ~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 90 (382)
T TIGR00902 20 YGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSAG--------- 90 (382)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 3455566777788888887 6677888888999999999999999999865332222111 1111111111
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHH
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSV 432 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~ 432 (481)
.++.+...+...+.+.+.+. ..+....+..+. +++|++..|.....+.+|..++|.+.+.+.+..||+..|.+...
T Consensus 91 -~~~~~~l~~~~~l~~~~~~~-~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~ 166 (382)
T TIGR00902 91 -AHNAWLLFIAIGLFALFFSA-GMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTA 166 (382)
T ss_pred -hhhHHHHHHHHHHHHHHHcc-chhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 22334444444444444444 334444555442 46789999999999999999999999999999999998877654
Q ss_pred H
Q psy7924 433 I 433 (481)
Q Consensus 433 ~ 433 (481)
.
T Consensus 167 ~ 167 (382)
T TIGR00902 167 G 167 (382)
T ss_pred H
Confidence 4
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-08 Score=94.43 Aligned_cols=127 Identities=17% Similarity=0.110 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcc
Q psy7924 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGE 385 (481)
Q Consensus 306 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 385 (481)
..+++++.|+++||+|||+.+..+.++..++.+........... .........+...+.+.+.+... +....++.|
T Consensus 48 ~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~~~~~~~-~~~~~~~~~ 123 (394)
T TIGR00883 48 RPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYATI---GIWAPILLLLARLIQGFSLGGEW-GGAALYLAE 123 (394)
T ss_pred hhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhh---HHHHHHHHHHHHHHHHhhccccc-cccHHHhhh
Confidence 35688999999999999999999999888887777653100000 00000112233333333333333 333478899
Q ss_pred cCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH--------HhhcCChhHHHHHHHHHH
Q psy7924 386 IFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT--------LLLGGHGAFWIFSVIAAL 436 (481)
Q Consensus 386 ~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~--------~~~g~~~~~~~~~~~~~~ 436 (481)
.+|+++|+...++.+....+|..+++.+...+. +..+|+..+.+.+.+.++
T Consensus 124 ~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 182 (394)
T TIGR00883 124 YAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLI 182 (394)
T ss_pred cCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHH
Confidence 999999999999999999999998888765443 345788777665544443
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.9e-08 Score=93.11 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=99.2
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHH-HHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSA-VIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
.....+.|.+.++.|.+. +.+.......+...++.++.++++||+|||....-.. +...+........
T Consensus 21 g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~---------- 90 (382)
T PRK11128 21 GVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWFG---------- 90 (382)
T ss_pred HHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHh----------
Confidence 444555666778888887 6678888888999999999999999999943221111 1111111111110
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
.++.+...+...+.+.+.+. ..+...++..+. .++|+.+.+.....+.+|..++|.+.+.+.++.||+..|++.++.
T Consensus 91 ~~~~~~l~i~~~l~g~~~~~-~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~ 167 (382)
T PRK11128 91 AHSFWLLFVAIGLFNLFFSP-LVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAG 167 (382)
T ss_pred cccHHHHHHHHHHHHHHHcc-cccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHH
Confidence 22334444433334444333 334444555444 356788888899999999999999999999999999988766654
Q ss_pred HHHHHHHHHHhccCC
Q psy7924 434 AALGAVFTYILVPET 448 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~ 448 (481)
..+.. +..+..||.
T Consensus 168 ~~~~~-~~~~~~~~~ 181 (382)
T PRK11128 168 VASML-LGQLLRPTI 181 (382)
T ss_pred HHHHH-HHHHccCCC
Confidence 44333 333334443
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.3e-08 Score=89.55 Aligned_cols=336 Identities=12% Similarity=0.069 Sum_probs=186.1
Q ss_pred CcccCchhhH-HHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhcccc
Q psy7924 21 PFLVTESDLS-FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 99 (481)
Q Consensus 21 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G 99 (481)
|-|+++.|+. -+.-+..-.+....++...+.|..|.|++++++.+...+...+..+.++.. .+ -+..+.- |
T Consensus 34 ~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~sv~--~m----q~~q~~y--g 105 (412)
T PF01770_consen 34 DKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTSVL--AM----QLMQFFY--G 105 (412)
T ss_pred ccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCcHH--HH----HHHHHHH--H
Confidence 4788888774 555666667788889999999999999999999999999999999999988 88 7888888 7
Q ss_pred ccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhh
Q psy7924 100 RKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEA 173 (481)
Q Consensus 100 ~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
...+.-..-... +++--++.+...... .+|..++..++..... ....
T Consensus 106 ~~~a~evay~sYiys~v~~~~yq~vts~~raa~--------------------l~g~~~s~~lgQllvs-------~~~~ 158 (412)
T PF01770_consen 106 LATAAEVAYYSYIYSVVDKEHYQKVTSYTRAAT--------------------LVGRFISSLLGQLLVS-------FGGV 158 (412)
T ss_pred HHHHHHHHHHHHheeecCHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH-------hcCC
Confidence 766542221111 455566676666666 6666666666632211 1344
Q ss_pred HHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHH-HHHHhhhhhcc--------Cc
Q psy7924 174 SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEIT-DMQNSLEKERS--------DK 244 (481)
Q Consensus 174 ~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------~~ 244 (481)
+.+.+..+......+..+..+++|..++-+.-+++.++..+ .++...++.+..++.+ +.++..+..+. -.
T Consensus 159 sy~~L~~isl~~~~~a~~~~~fLP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 237 (412)
T PF01770_consen 159 SYFQLNYISLASVSLALLIALFLPMPKRSLFFHRKPPAEQD-ANESESDKMNESPESSSSTEKSPSTESSSRKSVLRLLW 237 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCCCcccceeccCccccc-cccccccccccccccccccccCcccccchHHHHHHHHH
Confidence 56777777776666666666778876654433332221111 0000000000000000 00000000000 01
Q ss_pred cchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC----chhHHHHHHHHHHHHHHHHHHHHHHHh
Q psy7924 245 VPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL----NPNLCTIIVGTIMMVTTWIATMIVDRL 320 (481)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~g~l~d~~ 320 (481)
.++++..++|. ++...++.....+++..+..|...+-++..-+. -.+..-....+.+.++.+..|++..++
T Consensus 238 ~~~~~~y~~~~-----ll~WSlWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~VeA~~tllgA~~al~~g~v~~~w 312 (412)
T PF01770_consen 238 KDFKSCYSNPR-----LLLWSLWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVEAASTLLGAIAALLAGYVKVNW 312 (412)
T ss_pred HHHHHHhcCch-----HHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHHHHHHHHHHHHHHHHhHhhcch
Confidence 22334445543 223334444555556677777776666651111 224566666777788888888885555
Q ss_pred CChHHHHHH--HHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHH
Q psy7924 321 GRRILLLVS--AVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSI 398 (481)
Q Consensus 321 grr~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~ 398 (481)
.+..-+..+ ..+.+..++++.. .++.|......+++...+........ .-++.....+.-+...|+
T Consensus 313 ~~~~~l~l~~~S~l~a~~L~lm~~-----------t~~Iwv~Y~~yIif~~~y~fliTiA~-~qIA~~l~~e~yaLVFGi 380 (412)
T PF01770_consen 313 DRWGELALGVFSLLQAGLLFLMSF-----------TGNIWVCYAGYIIFRSLYMFLITIAS-FQIAKNLSEERYALVFGI 380 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----------hhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccccceeeeeee
Confidence 553333322 2333333333333 34556666666666666555433333 333344445555666676
Q ss_pred HHHHHHHHHHH
Q psy7924 399 ACLFNWVSVLV 409 (481)
Q Consensus 399 ~~~~~~~g~~~ 409 (481)
..+...+-..+
T Consensus 381 Ntf~Al~LQti 391 (412)
T PF01770_consen 381 NTFVALVLQTI 391 (412)
T ss_pred HHHHHHHHHHh
Confidence 66555444433
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.3e-09 Score=97.43 Aligned_cols=145 Identities=13% Similarity=0.093 Sum_probs=113.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhh
Q psy7924 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL 373 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (481)
+-+...+.+.++.+++.++++.+.||++-.+.+....+...+..++... .++.+..++.-++.+.+-+.
T Consensus 82 ~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~-----------~~s~~~~ialr~llGl~es~ 150 (495)
T KOG2533|consen 82 QLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA-----------VHSFPGLIALRFLLGLFESG 150 (495)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------HhhhHHHHHHHHHHHHHhcc
Confidence 3466888899999999999999999999666555554444443333322 13445566667777777777
Q ss_pred ccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH------hhcCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 374 GFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL------LLGGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 374 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
+++... .+++..|.+++|+.-+|+.+....+|+++++.+...+.+ ..||++.|.+-+++.++.++++++++|+
T Consensus 151 ~wP~~~-~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~ 229 (495)
T KOG2533|consen 151 GWPGVV-AILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPD 229 (495)
T ss_pred cchHHH-HHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecC
Confidence 776665 888899999999999999999999999999999876543 4689999999999999999999888887
Q ss_pred CCC
Q psy7924 448 TKG 450 (481)
Q Consensus 448 ~~~ 450 (481)
...
T Consensus 230 ~P~ 232 (495)
T KOG2533|consen 230 NPS 232 (495)
T ss_pred Chh
Confidence 554
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=96.87 Aligned_cols=165 Identities=13% Similarity=0.059 Sum_probs=106.2
Q ss_pred hHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH----hCChH-HHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy7924 279 VFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR----LGRRI-LLLVSAVIMALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 279 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (481)
.+..+++.++.|.++ ..+.......+...+..++.|+++|| +|||| .+..+....+++.+++... ++...
T Consensus 20 ~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~---~~~~~- 95 (437)
T TIGR00792 20 TYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTT---PDFSA- 95 (437)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHhC---CCCCc-
Confidence 345566666788887 66788888889999999999999998 57644 5666666666665555331 11000
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccC-cccchhhHHHHHHHHHHHHHHHHHhHHHHHHH-------hhcCC
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF-PSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL-------LLGGH 424 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~-------~~g~~ 424 (481)
............++..+.+....+.. ++..|.. ++++|++..++.+....+|..+++.+.+.+.. ..+|+
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~ 173 (437)
T TIGR00792 96 -TGKLVYAYITYILLGLFYSFVNIPYW-SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWF 173 (437)
T ss_pred -chHHHHHHHHHHHHHHHHHhhcccHh-hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHH
Confidence 01112223333344444444333443 6667776 56889999999888888888877776665553 34677
Q ss_pred hhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 425 GAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
..+.+.+++..+..++..+..||++
T Consensus 174 ~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 174 MFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEecC
Confidence 7777777777766666655666543
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.9e-08 Score=81.28 Aligned_cols=166 Identities=17% Similarity=0.126 Sum_probs=105.4
Q ss_pred hhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy7924 272 FGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSG 350 (481)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (481)
....+.+..|.|.+.++.|++. +...+.....++..+ .++.|.+.|++|.+.++.++.+...++...+.......-+
T Consensus 15 ~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~- 92 (250)
T PF06813_consen 15 SGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIP- 92 (250)
T ss_pred cCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccC-
Confidence 3345677789999999999987 445566666677666 4888999999999999999999999998887664321110
Q ss_pred CCccccchhHHHHHHHHHHHHhhcc-CchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHH
Q psy7924 351 SDVSNIGWLPLGSLCVFIIVFSLGF-GPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI 429 (481)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 429 (481)
..+.|...+...+ .+.+..+ .........+.|| ++||++.|+.-....+++.+...+...+.+. +....+.+
T Consensus 93 ---~~~~~~~~~~~~l--~~~s~~~~~ta~lvt~~~NFP-~~RG~vvgilk~~~GLSaai~t~i~~~~f~~-~~~~fll~ 165 (250)
T PF06813_consen 93 ---SLPVWLMCLFLFL--GGNSSCWFNTASLVTCVRNFP-RSRGTVVGILKGFFGLSAAIFTQIYSAFFGD-DPSSFLLF 165 (250)
T ss_pred ---ccchHHHHHHHHH--HcccHHHhhhHHHHHHHHhCc-cccCceehhhhHHHHhHHHHHHHHHHHHcCC-ChHHHHHH
Confidence 1122222222222 2222222 2222234447898 5799999999999999999888877666554 22223334
Q ss_pred HHHHHHHHHHHHHHhcc
Q psy7924 430 FSVIAALGAVFTYILVP 446 (481)
Q Consensus 430 ~~~~~~~~~~~~~~~~~ 446 (481)
.+....+.+++...+++
T Consensus 166 la~~~~~v~l~~~~~vr 182 (250)
T PF06813_consen 166 LAVLPAVVCLVAMFFVR 182 (250)
T ss_pred HHHHHHHHHHHHhhhee
Confidence 44444444444444443
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.6e-06 Score=79.41 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=57.3
Q ss_pred HHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccccceeeeeeccc
Q psy7924 33 GSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS 111 (481)
Q Consensus 33 ~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~ 111 (481)
.++.+....+++++.+.+.|+.|.|+.+.++...+....+...+-+++. + +++-.+. |+|.+..+.....
T Consensus 56 ~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~N~y~---~----yfssall--G~Gaallw~GqG~ 125 (461)
T KOG3098|consen 56 QAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFPNSYY---L----YFSSALL--GFGAALLWTGQGG 125 (461)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhcchHH---H----HHHHHHh--hhhHHheecccce
Confidence 6777888899999999999999999999999999888877666665554 5 7778888 9998877665544
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-07 Score=85.77 Aligned_cols=173 Identities=11% Similarity=0.008 Sum_probs=104.0
Q ss_pred HHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHH--HHHHHHHHHHHHHHHH-HHHHHhCChHHHHHHHHHH-HHHHHHHH
Q psy7924 267 MFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLC--TIIVGTIMMVTTWIAT-MIVDRLGRRILLLVSAVIM-ALSTLTMG 341 (481)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~--~~~~~~~~~~~~~~~g-~l~d~~grr~~~~~~~~~~-~~~~~~~~ 341 (481)
.++.+...+.....+.|.++++.|.+. +.+.. .....+..++..++.+ +..||.||||..+....+. ..+...+.
T Consensus 9 ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~ 88 (390)
T TIGR02718 9 LYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLA 88 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHH
Confidence 334444445666678888888888887 44554 3445666777777774 4688899988865554332 22222222
Q ss_pred HHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q psy7924 342 YYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL 421 (481)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~ 421 (481)
... .. ............. .........+....+..|..+++.++...+.......+|..+++...+.+.+..
T Consensus 89 ~~~--~~-----~~~~~~~~~~~~~-~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~ 160 (390)
T TIGR02718 89 LVG--PD-----VAGAGWAVGLLAC-ASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKF 160 (390)
T ss_pred cCC--cc-----hhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 110 00 0111112222222 222222233333456667777777777777777777888888888888899999
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 422 GGHGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 422 g~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
||+..|++.+++..+..+..++..|+
T Consensus 161 gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 161 GQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999998888777666655444333
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=9.1e-07 Score=77.90 Aligned_cols=157 Identities=11% Similarity=0.017 Sum_probs=112.6
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
.......|.+.+.++++. +++.+...+..+..+.++..+++.+|+|+|+-++.+..++++++.++.-... .
T Consensus 30 ~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~--------~ 101 (422)
T COG0738 30 CLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS--------S 101 (422)
T ss_pred hcchhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh--------h
Confidence 444567888888888887 7788888888999999999999999999999999999999999888743210 1
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh--------------
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL-------------- 420 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~-------------- 420 (481)
......+..+.+.+.+.+.--... ..++..+.|++..+.-+.+...++.+|++++|.+.+.+..+
T Consensus 102 ~~y~~FL~~lFila~Gi~~Letaa-Np~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~ 180 (422)
T COG0738 102 KSYGFFLVALFILASGIGLLETAA-NPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAI 180 (422)
T ss_pred hhHHHHHHHHHHHHhhhHHHHhcc-chHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHH
Confidence 111222333333333333332333 37778888888888889999999999999999999887762
Q ss_pred -----hcCChhHHHHHHHHHHHHHHH
Q psy7924 421 -----LGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 421 -----~g~~~~~~~~~~~~~~~~~~~ 441 (481)
..++.++...+....+..+..
T Consensus 181 ~~~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 181 KGADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 124556666665555554443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.8e-11 Score=111.56 Aligned_cols=143 Identities=20% Similarity=0.196 Sum_probs=101.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhcc
Q psy7924 296 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375 (481)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
+.......++..+|+++.|+++||+|||+.+..+..+..++.++..+... ..+.+...+...+.+++.+...
T Consensus 49 ~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~R~~~G~~~g~~~ 120 (451)
T PF00083_consen 49 SLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAPS--------YNNFWMLLIGRFLIGFGIGGAY 120 (451)
T ss_pred HHHHHHHHhhhccccccccccccccccccccccccccccccccccccccc--------cccccccccccccccccccccc
Confidence 45667777889999999999999999999999999999998888766310 0144555555566666555544
Q ss_pred CchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH---hhcCChhHHHHHHHHHHHHHHHHHhccCC
Q psy7924 376 GPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL---LLGGHGAFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 376 ~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
... ..++.|..|++.|+...++.+....+|..++..+.-...+ ..+|+..+.+..+..++..+ ...+.||+
T Consensus 121 ~~~-~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~-~~~~~pES 194 (451)
T PF00083_consen 121 VVS-PIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLL-LRFFLPES 194 (451)
T ss_pred ccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 444 4899999999999999999888887777776655433322 23477776665555544333 34567886
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-08 Score=95.07 Aligned_cols=142 Identities=14% Similarity=0.049 Sum_probs=101.4
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH----HhHHhHhhhhhHHHHhhcccccc
Q psy7924 26 ESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS----SMALGAVFGSPVVGNLVDTVGRK 101 (481)
Q Consensus 26 ~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~r~~~~~G~~ 101 (481)
.++.+...++..++..++.++.|+++||+|||+++..+.++..++..+..... +.+ .+ ++.+++. |++
T Consensus 250 ~~~~g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~--~l----~l~~~l~--g~~ 321 (418)
T TIGR00889 250 VKNASIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYA--LL----FLSMIVY--GCA 321 (418)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHH--HH----HHHHHHH--HHH
Confidence 46779999999999999999999999999999999999998888876666532 233 55 6778888 877
Q ss_pred ceeeeeeccc-------cccccchhhhhh-HHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccc--h
Q psy7924 102 NTMLLLAVPS-------FDIRPLLGETSQ-VTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERK--F 171 (481)
Q Consensus 102 ~~~~~~~~~~-------~~~r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--~ 171 (481)
.+...+.... ++.|+...+..+ ... .+|..+++.++... .+... .
T Consensus 322 ~~~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~--------------------~lg~~iGp~l~G~l-----~~~~g~~~ 376 (418)
T TIGR00889 322 FDFFNISGSVFVEKEVPVHIRASAQGLFTLMCN--------------------GFGSLLGYILSGVM-----VEKMFAYG 376 (418)
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH--------------------hhHHHHHHHHHHHH-----HHHhcccc
Confidence 6655444322 567888888886 455 66777777666211 01100 1
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHh-ccCCCh
Q psy7924 172 EASVYGLSIICALLPIFFVGLML-LMPESP 200 (481)
Q Consensus 172 ~~~w~~~~~~~~~~~~~~~~~~~-~~~esp 200 (481)
..+|+..|.+.++..++..++.. +++|+.
T Consensus 377 ~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 377 TFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 14699999988888777666555 577763
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.71 E-value=4.4e-07 Score=74.78 Aligned_cols=322 Identities=13% Similarity=0.094 Sum_probs=156.3
Q ss_pred cccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhh
Q psy7924 9 SPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGS 88 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~ 88 (481)
.|.+..+-. +++..+.|++.+.-.-+-...+...+.|.++|+-|||+.-..-.+.+.+++ +.-.++.+- .+
T Consensus 57 gPYvYyLYs---tYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsC-iTKhSpqYk--VL--- 127 (454)
T KOG4332|consen 57 GPYVYYLYS---TYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSC-ITKHSPQYK--VL--- 127 (454)
T ss_pred Cceeeeeeh---hcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHH-HhhcCCceE--EE---
Confidence 344455555 788888899888777777777888889999999999996554333333332 223456677 88
Q ss_pred hHHHHhhccccccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Q psy7924 89 PVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRL 162 (481)
Q Consensus 89 ~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 162 (481)
+++|.+. |+..+..+...-. .++|+.---.....+.-.. +. +..+-.+++...+-...
T Consensus 128 -mVGR~LG--GiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~-----------ff-gNglvAiiaGlfgn~lv- 191 (454)
T KOG4332|consen 128 -MVGRVLG--GIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAV-----------FF-GNGLVAIIAGLFGNLLV- 191 (454)
T ss_pred -eehhhhh--hHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHH-----------Hh-hccHHHHHHHHHHHHHH-
Confidence 9999999 9887665544333 3344433222211110000 00 00111111111110000
Q ss_pred hhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhcc
Q psy7924 163 AQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERS 242 (481)
Q Consensus 163 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (481)
.. ...|--.+|-..+....+...+.+ . .|-..-++..|.++.+.+
T Consensus 192 ----d~--~slGPVAPFdAAacfLaigmAvil--~---~W~ENygdps~~kdlltq------------------------ 236 (454)
T KOG4332|consen 192 ----DT--FSLGPVAPFDAAACFLAIGMAVIL--S---SWSENYGDPSENKDLLTQ------------------------ 236 (454)
T ss_pred ----HH--hccCCCCchHHHHHHHHHHHHHHH--h---hhhhccCChhhhHHHHHH------------------------
Confidence 00 001111122211111111111111 0 111111111111111110
Q ss_pred CccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhC
Q psy7924 243 DKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLG 321 (481)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g 321 (481)
-+...+.+..+ +++.+.-.+........+..+..|.|.+-.+ .+. ..+.+...+.+..++|+-+..++..|-.
T Consensus 237 f~gaa~aiaSD----~ki~LLG~iqsLFE~smytFVFLWTPaLspn~e~i--PhGfiFatFMlASmLGSSla~Rl~s~s~ 310 (454)
T KOG4332|consen 237 FKGAARAIASD----EKIALLGAIQSLFEGSMYTFVFLWTPALSPNDEEI--PHGFIFATFMLASMLGSSLASRLLSRSS 310 (454)
T ss_pred hhHhHHHHhcc----hHHHHHHHHHHHHhhhhheeeeeecccCCCCcccC--CchhHHHHHHHHHHHhhHHHHHHHhcCC
Confidence 11122223333 2233333344444444455566666665422 122 2356666777778888888777766644
Q ss_pred Ch--HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHH
Q psy7924 322 RR--ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIA 399 (481)
Q Consensus 322 rr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~ 399 (481)
.| ..+.+.+.+..+...+........+.. ..+....+..+++-...+..++.++ -+-.+..|++.|++.+.+.
T Consensus 311 ~~ve~ymqivf~vs~a~l~Lpilt~~vsP~k----es~~~s~i~F~~~E~cvGlfwPSim-kmRsqyIPEearstimNfF 385 (454)
T KOG4332|consen 311 PKVESYMQIVFLVSIAALLLPILTSSVSPSK----ESPSESLIGFCLFEACVGLFWPSIM-KMRSQYIPEEARSTIMNFF 385 (454)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHhccCCCc----CCchHHHHHHHHHHHHHhhcchHHH-HHHHhhCCHHHHhhhhhhe
Confidence 33 345555555544444433333222221 2233446667777777777776665 6667889999998776655
Q ss_pred HH
Q psy7924 400 CL 401 (481)
Q Consensus 400 ~~ 401 (481)
..
T Consensus 386 Rv 387 (454)
T KOG4332|consen 386 RV 387 (454)
T ss_pred ec
Confidence 43
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=82.92 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhc
Q psy7924 295 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
.+.......++.++|+++.|++.||+|||+++...++++.++.++.+....... +....+.+...-.+++++.+.-
T Consensus 86 ~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~~~~~----~~~~m~~L~~~R~~LGiGIGGD 161 (538)
T KOG0252|consen 86 LALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSVGTTS----PLGVMMTLCFFRFLLGIGIGGD 161 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCCCCCC----CcchhhHHHHHHHHhhccccCC
Confidence 356777788889999999999999999999999999999998886555321110 0112222333333333333322
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHh
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK 412 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 412 (481)
.|+..+.++|....+.||+-.+.....+..|...+..
T Consensus 162 -YPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~i 198 (538)
T KOG0252|consen 162 -YPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGI 198 (538)
T ss_pred -CcchHHHhhhhhhhccccceeEEEEEecchhHhhccH
Confidence 3666689999999999998888766655554444433
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.2e-06 Score=73.90 Aligned_cols=180 Identities=21% Similarity=0.144 Sum_probs=105.1
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy7924 256 AKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA 334 (481)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~ 334 (481)
++++.+....+.....+ ....|.-.+.+++|++. +.............+...+.|.++||+|||+..+...++..
T Consensus 35 Fqr~yl~vY~La~~aDW----LQGpY~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~ 110 (354)
T PF05631_consen 35 FQRKYLLVYLLAMAADW----LQGPYLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYS 110 (354)
T ss_pred HHHHHHHHHHHHHHHHH----hhcchhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 34555555444443332 22223334456788887 55666666667778888889999999999998888877777
Q ss_pred HHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhccc----CcccchhhHHHHHHHH-HHHHHHH
Q psy7924 335 LSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEI----FPSQIKGIAVSIACLF-NWVSVLV 409 (481)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~----~p~~~r~~~~g~~~~~-~~~g~~~ 409 (481)
++++.-- .++....++.-++.+...+..+.+--.-++.|. +|++..+...+..... +.+-.+.
T Consensus 111 ~scl~k~------------~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~ 178 (354)
T PF05631_consen 111 LSCLTKH------------SSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIG 178 (354)
T ss_pred HHHHHHh------------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHH
Confidence 7776432 223344555555555554444433322344454 4555555555544422 2333444
Q ss_pred HHhHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7924 410 VTKFFGDVTLLLGG--HGAFWIFSVIAALGAVFTYILVPETKGK 451 (481)
Q Consensus 410 ~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (481)
...+...+.+..+. ..+|.....+..++.++.....+|..+.
T Consensus 179 aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~ 222 (354)
T PF05631_consen 179 AGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD 222 (354)
T ss_pred HhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC
Confidence 44555555665544 6778777777777766665556665543
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.9e-07 Score=84.27 Aligned_cols=188 Identities=12% Similarity=0.045 Sum_probs=117.3
Q ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhh-hcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHH
Q psy7924 256 AKRGLLIGLGVMFIQQFGGINAVVFYTVKIFK-DAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGR-RILLLVSAVI 332 (481)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~ 332 (481)
.||.+.+.....+.............-||..+ +.+-+. -.++......++..+++++.+++..|.+. |+.++.+.++
T Consensus 32 ~wrsi~l~~~~sfl~~v~~sI~~~s~wpYl~~lD~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii 111 (488)
T KOG2325|consen 32 NWRSIYLALLNSFLVAVQFSIYLTSMWPYLQKLDPTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLI 111 (488)
T ss_pred chHhHHHHHHHHHHHhhhheEEEeecchhhhhcCCCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHH
Confidence 34555555555544433322222333344433 122222 33667777889999999999999999886 7888889999
Q ss_pred HHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHh
Q psy7924 333 MALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK 412 (481)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~ 412 (481)
+.++.++.....+.+ +...+.+++.-.+. +.+.+.....-.|+++..-.++|.++.+.......+|.++||.
T Consensus 112 ~~~g~llY~~l~~~~------~~~~y~mL~~R~l~--Gvg~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~ 183 (488)
T KOG2325|consen 112 AIIGNLLYLALAYVP------NGVKYLMLVARILT--GVGVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPT 183 (488)
T ss_pred HHHHHHHHHHHHhcc------cchHHHHHHHHHHc--CcCcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHH
Confidence 999988875443322 11233444433333 3344444555688888777788899998888877777777776
Q ss_pred HHHHHHHh-------------hcCChhHHHHHHHHHHHHHHHHHhccCCCCC
Q psy7924 413 FFGDVTLL-------------LGGHGAFWIFSVIAALGAVFTYILVPETKGK 451 (481)
Q Consensus 413 ~~~~~~~~-------------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (481)
+...+..- .-+..+-++.+.+.++..++..+..+|..+.
T Consensus 184 ~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~ 235 (488)
T KOG2325|consen 184 IQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRG 235 (488)
T ss_pred HHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccC
Confidence 64322210 0134566677777777777777777775443
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.2e-07 Score=78.05 Aligned_cols=156 Identities=15% Similarity=0.033 Sum_probs=104.8
Q ss_pred hHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q psy7924 279 VFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIG 357 (481)
Q Consensus 279 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (481)
....|......|.+. +..++......+..+++..+|.++|++|||+.+.......++...+-+. +.+.
T Consensus 98 s~i~~~l~~~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~-----------spnf 166 (528)
T KOG0253|consen 98 SLILPALDEVWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA-----------SPNF 166 (528)
T ss_pred HHHHHHHHhhhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC-----------CCCe
Confidence 334455555566655 5567777788888999999999999999999888887777776665544 2333
Q ss_pred hhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 358 WLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
..+++.-.+.+++.+. .|...++-.|..|...|..-+-+. ....+|.+....+.-......||++-..... .....
T Consensus 167 ~~L~~f~~l~~~g~gg--~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~-~pl~~ 242 (528)
T KOG0253|consen 167 ASLCVFRALWGFGVGG--LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSS-TPLMF 242 (528)
T ss_pred ehhhHHHHHHhccCCC--ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH-hHHHH
Confidence 4444444444444333 444445667999999888776555 6777777777776666677789987666555 44444
Q ss_pred HHHHHHhccCCC
Q psy7924 438 AVFTYILVPETK 449 (481)
Q Consensus 438 ~~~~~~~~~~~~ 449 (481)
....+++.||..
T Consensus 243 ~a~f~~w~~ESp 254 (528)
T KOG0253|consen 243 AARFLVWVYESP 254 (528)
T ss_pred HHHHHhhcccCc
Confidence 444556778764
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.9e-07 Score=86.29 Aligned_cols=163 Identities=17% Similarity=0.131 Sum_probs=98.7
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH----hCCh-HHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR----LGRR-ILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
+...++.+..|++. ..+....+..+...+..++.|+++|| +||| +.+..+.+..+++..++... ++.. .
T Consensus 31 ~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~~---p~~~--~ 105 (444)
T PRK09669 31 FLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFYT---PDFG--A 105 (444)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHhC---CCCC--c
Confidence 34455556688887 66778888888899999999999999 6664 55556666666655443221 1100 0
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccC-cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-------cCCh
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF-PSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL-------GGHG 425 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------g~~~ 425 (481)
........+..+++..+++....|.. ++.+|+. ++++|.+..+.-.....+|+.+++.+...+.... +|+.
T Consensus 106 ~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~ 184 (444)
T PRK09669 106 TGKIIYACVTYILLSLVYTAINVPYC-AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFY 184 (444)
T ss_pred chHHHHHHHHHHHHHHHHHhhcchHH-HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHH
Confidence 11122333333444445554444444 6777876 5578998888888888888888776655544433 3444
Q ss_pred hHHHHHHHHHHHHHHHHHhccCC
Q psy7924 426 AFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
.+.+.++++.+...+.++..+|+
T Consensus 185 ~~~i~~ii~~v~~~~~~~~~~e~ 207 (444)
T PRK09669 185 AMMVMGLLGVVLFFCCFFMTKER 207 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEe
Confidence 45555555555544444444443
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-06 Score=83.80 Aligned_cols=134 Identities=11% Similarity=0.033 Sum_probs=83.4
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH----HhCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD----RLGR-RILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d----~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
+...++.+..|++. ..+.+..+.-+...+..++.|+++| |+|| |+.+..+.+..+++..++... ++ .+ .
T Consensus 28 ~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~~---p~-~~-~ 102 (473)
T PRK10429 28 YLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFSA---HL-FE-G 102 (473)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHcC---CC-CC-c
Confidence 33444555578887 5677777888889999999999999 5588 555666666666665444221 11 00 0
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccC-cccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF-PSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 419 (481)
........+..+++..+++....|.. ++.+|+. ++++|.+..+.-....++++.+.+.+...+.+
T Consensus 103 ~~~~~~~~~~~~l~~~~~t~~~ip~~-al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~ 168 (473)
T PRK10429 103 TAQYVFVCVTYILWGMTYTIMDIPFW-SLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVN 168 (473)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcchHH-hhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122233333444455555554554 6778887 58899998888777777777776665544433
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.1e-07 Score=64.09 Aligned_cols=71 Identities=15% Similarity=0.073 Sum_probs=67.7
Q ss_pred ccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhH
Q psy7924 8 TSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMA 81 (481)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~ 81 (481)
.+|.+|.+++ |.++|.++.+++.+..++||.+|.+...++.++..+++.+..+++...+..+.+++.++.+
T Consensus 11 yTplLP~M~~---~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~~~~~ 81 (85)
T PF06779_consen 11 YTPLLPLMQA---DGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALTHSFW 81 (85)
T ss_pred HHhHhHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhchH
Confidence 4789999999 9999999999999999999999999999999998999999999999999999999999887
|
Note that many members are hypothetical proteins. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-06 Score=79.83 Aligned_cols=169 Identities=13% Similarity=0.041 Sum_probs=99.1
Q ss_pred HHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhC-----ChHHHHHHHHHHH-HHHH
Q psy7924 266 VMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLG-----RRILLLVSAVIMA-LSTL 338 (481)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----rr~~~~~~~~~~~-~~~~ 338 (481)
..+..... ........+.+.++.|.+. +.+.......+...+-. ++|.++||++ ||+.+..+.++.. ++..
T Consensus 34 ~y~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~-l~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~ 111 (468)
T TIGR00788 34 VLFVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKP-FAGVMSDTFPLFGYTKRWYLVLSGLLGSAILYG 111 (468)
T ss_pred HHHHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHhcCCCCccchHHHHHHHHHHHHHHHH
Confidence 34444433 3444455566666789887 44456666666666644 4999999997 6666666655542 2222
Q ss_pred HHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh---HHHHHHHHHHHHHHHHHhHHH
Q psy7924 339 TMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI---AVSIACLFNWVSVLVVTKFFG 415 (481)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~---~~g~~~~~~~~g~~~~~~~~~ 415 (481)
.+.. . .+..........+..++.+. .-...-.+..|..+ +.+.. ..+......++|..+++.+.|
T Consensus 112 ~l~~------~----~~~~~~~~~~~~l~~~~~a~-~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G 179 (468)
T TIGR00788 112 LLPG------K----VSSAKVAAAFIFLAALAKAL-YDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGG 179 (468)
T ss_pred hccc------c----cchHHHHHHHHHHHHHHHHH-HHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHH
Confidence 1111 0 11111222222233333222 22334477778887 44443 334444555689999999999
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 416 DVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 416 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
.+.+..+|+..|.+.+.+.++. .+...+.+|++
T Consensus 180 ~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 180 PLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 9999999999998888777766 44445667754
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.7e-06 Score=77.49 Aligned_cols=138 Identities=16% Similarity=0.211 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhh
Q psy7924 302 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWM 381 (481)
Q Consensus 302 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
.++..++.++..|.++||+|||..+........+..+...+. . ++..+ ..-...++... .....+
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~~-----------~--~~~~~-~~~l~g~~~~~-~s~~~a 135 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLFQ-----------G--YWFFL-LLGLSGGFSAI-FSVGFA 135 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHHH-----------H--HHHhh-hcccccchhhh-hhhhhh
Confidence 366778899999999999999999998888887777766552 1 22222 11111222222 234458
Q ss_pred hhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHH
Q psy7924 382 LVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLD 454 (481)
Q Consensus 382 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 454 (481)
++++....+.|....|+.+.....+..++|.+.+...+..|....+.+..+...+..+...+.+||+...+.+
T Consensus 136 ~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 136 YVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred heeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 8999999999999999999999999999999999999999998889888888888888888889988665443
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.9e-06 Score=79.53 Aligned_cols=161 Identities=13% Similarity=0.087 Sum_probs=98.9
Q ss_pred hhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH----hCChH-HHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 281 YTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR----LGRRI-LLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 281 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
...++.+..|+++ ..+.+..+.-+...+.-++.|+++|| +|||+ .+..+.+..+++..++... ++ .+ ..
T Consensus 32 l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~~---p~-~s-~~ 106 (460)
T PRK11462 32 MMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYST---PD-LS-MN 106 (460)
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHhC---CC-CC-cc
Confidence 3444455678877 55677777778889999999999997 57754 5556666666665544321 11 10 01
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCc-ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-------CChh
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP-SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-------GHGA 426 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-------~~~~ 426 (481)
.......+..+++..++.....|.. ++.+|+.+ +++|++..+.-...+.+|..+++.+...+.+..| |...
T Consensus 107 ~~~~y~~~~~~~~~~~~t~~~ipy~-al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~ 185 (460)
T PRK11462 107 GKMIYAAITYTLLTLLYTVVNIPYC-ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGG 185 (460)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccHH-HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHH
Confidence 1122333444445555555555554 67778766 7899999999999999988888777665555443 3333
Q ss_pred HHHHHHHHHHHHHHHHHhccC
Q psy7924 427 FWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~ 447 (481)
..+++++..++..+++...+|
T Consensus 186 ~~i~~ii~~i~~~i~~~~~kE 206 (460)
T PRK11462 186 IAVLSVVAFMMLAFCFFTTKE 206 (460)
T ss_pred HHHHHHHHHHHHHHHHhccee
Confidence 344444444444444443444
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00014 Score=67.04 Aligned_cols=127 Identities=17% Similarity=0.123 Sum_probs=81.0
Q ss_pred HhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHH
Q psy7924 285 IFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGS 363 (481)
Q Consensus 285 ~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (481)
+....|+++ ..+..-....+.++.+.++..++.+|+|..+.-..+......+..+....++.+.++. +..+....+..
T Consensus 284 yl~~~G~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~~~-~~~s~~~l~~g 362 (432)
T PF06963_consen 284 YLKSQGYSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGSPF-SSISAYLLLGG 362 (432)
T ss_pred HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCCCc-hhhHHHHHHHH
Confidence 344458886 4566777778889999999999999999988888887777766666555444443220 01111122222
Q ss_pred HHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhH
Q psy7924 364 LCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKF 413 (481)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 413 (481)
..+--.+.- ++-.....++.|..|+++||+..|+-+...++...+.-.+
T Consensus 363 i~~SR~GLW-~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~~ 411 (432)
T PF06963_consen 363 IALSRIGLW-SFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFVL 411 (432)
T ss_pred HHHHHHHHH-hhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 1222223677899999999999999999888877664433
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-07 Score=76.73 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=83.2
Q ss_pred cccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH-------HhHHh
Q psy7924 11 AGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS-------SMALG 83 (481)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 83 (481)
.-|++++ .+|+|++|.+.+.+.-.+|..+| ++.|.+.|++|+|.++.++.+...+|..+..++- +++
T Consensus 24 yS~~Lk~---~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~-- 97 (250)
T PF06813_consen 24 YSPQLKS---RLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVW-- 97 (250)
T ss_pred hhHHHHH---HhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchH--
Confidence 3467777 99999999999999999999875 8899999999999999999999999988876652 334
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc------cccccchhhhhhHHH
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS------FDIRPLLGETSQVTV 126 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~------~~~r~~~~~~~~~~~ 126 (481)
.+ .+..++. |.+.+...+.... +++||.+.++.-...
T Consensus 98 ~~----~~~~~l~--~~s~~~~~ta~lvt~~~NFP~~RG~vvgilk~~~ 140 (250)
T PF06813_consen 98 LM----CLFLFLG--GNSSCWFNTASLVTCVRNFPRSRGTVVGILKGFF 140 (250)
T ss_pred HH----HHHHHHH--cccHHHhhhHHHHHHHHhCccccCceehhhhHHH
Confidence 66 6666777 6665544333322 889999999888887
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-07 Score=86.99 Aligned_cols=165 Identities=17% Similarity=0.153 Sum_probs=106.6
Q ss_pred hHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH----HhCChHHH-HHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy7924 279 VFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD----RLGRRILL-LVSAVIMALSTLTMGYYFYLKNSGSD 352 (481)
Q Consensus 279 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d----~~grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (481)
.+..+++.+..|+++ ..+.......+...+..++.|.++| |+|||+.. ..+.+..+++..++.... + ....
T Consensus 22 ~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~--p-~~~~ 98 (428)
T PF13347_consen 22 SYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPP--P-AGLS 98 (428)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccc--c-chhh
Confidence 345566666678887 5566777777888889999999999 78976654 466677777666654310 0 0000
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc-ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-------CC
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP-SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-------GH 424 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p-~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-------~~ 424 (481)
.........+..+++..++.....+.. ++.+|+.+ +++|.+..+.-.....+|..+...+.+.+.+..+ |+
T Consensus 99 ~~~~~~~~~~~~~l~~~~~t~~~i~~~-al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~ 177 (428)
T PF13347_consen 99 FTAKLVWLFVFYILFDIAYTFVQIPYN-ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYR 177 (428)
T ss_pred hhhHHHHHHHHHHHHHHhhhhccCchh-hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHH
Confidence 011112234444445556555555554 78889987 5789999999888888888777777766665433 45
Q ss_pred hhHHHHHHHHHHHHHHHHHhccC
Q psy7924 425 GAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
....+.+++..+..++..+..||
T Consensus 178 ~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 178 WMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred HHHHHHHHHHHHHhhhhhheeee
Confidence 55556666666666666666666
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-05 Score=76.47 Aligned_cols=159 Identities=13% Similarity=0.009 Sum_probs=102.3
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHHHh---
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGSSM--- 80 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~--- 80 (481)
+|.....+..+.+ .++.++++...+...+....-+..+++|+++|+ +||+++++++.++..+|..+.+++...
T Consensus 4 YGm~aiLvlYl~~---~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~ 80 (654)
T TIGR00926 4 YGMRTILVLYFLN---FLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG 80 (654)
T ss_pred eecHHHHHHHHHH---HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc
Confidence 4445555556666 789999999999999999999999999999995 799999999999999998888765311
Q ss_pred --H-HhHhhhhhHHHHhhccccccceeeeeeccc-------cc---cccchhhhhhHHHHHHHhhhcccccccccccccc
Q psy7924 81 --A-LGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FD---IRPLLGETSQVTVWVLISTTNRRISDKCFVGSDH 147 (481)
Q Consensus 81 --~-~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~---~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (481)
. .... +++-.+. ..|.|..-+.... ++ +|.....+...+. +
T Consensus 81 ~~~~~~~~----l~gLaLi--a~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~i--------------------N 134 (654)
T TIGR00926 81 HPLHDLLD----LLGLALI--ALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAI--------------------N 134 (654)
T ss_pred cchHHHHH----HHHHHHH--HhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHH--------------------H
Confidence 0 0022 4445555 5555555444444 11 2344445555555 7
Q ss_pred chhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh
Q psy7924 148 LAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML 194 (481)
Q Consensus 148 ~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 194 (481)
+|.+++..+..... ..........+|...|.+.++..++.++...
T Consensus 135 iGSlis~~i~~~l~--~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 135 AGSLISTIITPILR--GDVGCFGCQDCYPLAFGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHH--HhhcccccCcchHHHHHHHHHHHHHHHHHHH
Confidence 77777766652110 0000001234699999988887776655543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.38 E-value=5.3e-07 Score=81.48 Aligned_cols=154 Identities=16% Similarity=0.130 Sum_probs=83.2
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH--HHHHHHHHHhhcCCCCC
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMAL--STLTMGYYFYLKNSGSD 352 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 352 (481)
....++..++.+..|++. +.+.+.....+..++.+++.|.++||+|.||-++.......+ +......+.
T Consensus 25 i~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~-------- 96 (412)
T PF01306_consen 25 IFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFG-------- 96 (412)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHH--------
T ss_pred HHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 344455555556689988 778888888899999999999999999966655433332222 221111110
Q ss_pred ccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcc---cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHH
Q psy7924 353 VSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPS---QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI 429 (481)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~---~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 429 (481)
+-...-.....++.+...+..+.+.. .. .|.+-. +..+--.|=.-..+.+|.+++..+.|.+.+. +.+..|++
T Consensus 97 -pll~~n~~lg~iig~i~l~~~f~~~~-~~-~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i-~p~~~fwi 172 (412)
T PF01306_consen 97 -PLLQSNFWLGAIIGGIYLGLVFNAGV-PL-SEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNI-NPNIIFWI 172 (412)
T ss_dssp -HHHHTT-HHHHHHTTTTTTTTTTTHH-HH-HHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHcccc-hH-HHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeee-CccHHHHH
Confidence 00000011222222222333333332 12 143321 2334556777788889999999999988864 44566766
Q ss_pred HHHHHHHHHHHH
Q psy7924 430 FSVIAALGAVFT 441 (481)
Q Consensus 430 ~~~~~~~~~~~~ 441 (481)
......+..++.
T Consensus 173 ~s~~~~il~lll 184 (412)
T PF01306_consen 173 ASAAAIILLLLL 184 (412)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555444444433
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.37 E-value=6.6e-06 Score=74.05 Aligned_cols=70 Identities=9% Similarity=-0.010 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccccceeee
Q psy7924 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLL 106 (481)
Q Consensus 29 ~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~ 106 (481)
.+.+.-+-.+...+.-+.+.++.+|+.-+.=..+...+..++.++.+++++.+ .- +++-.+. +++.|.-.
T Consensus 61 t~~Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~~~~v~--~~----l~Gv~la--s~ssg~GE 130 (402)
T PF02487_consen 61 TGAVLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAFSPSVW--VR----LLGVVLA--SLSSGLGE 130 (402)
T ss_pred chHHHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheeeccchh--HH----HHHHHHH--hhhhhhhH
Confidence 34455556667777777888888988765555666778888999999999888 76 6666666 65555433
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.7e-05 Score=67.86 Aligned_cols=152 Identities=16% Similarity=0.077 Sum_probs=117.3
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
+.+....+.+.++.|.+. .++..+.+..++..+.+++..++.+|+|.++.+..+.++.+++.++=...
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~~----------- 97 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSLG----------- 97 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhcc-----------
Confidence 344455667778888887 67889999999999999999999999999999999999888887765431
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-cCChhHHHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL-GGHGAFWIFSVI 433 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-g~~~~~~~~~~~ 433 (481)
.....+....+.+.+.+.+..-++ ..+-+.||.+ -+..+|++.....+++++++.+..++.++. ||+....+.+..
T Consensus 98 -~~~~L~~gt~l~G~gIav~nVLLP-slIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~ 174 (395)
T COG2807 98 -GLPLLFLGTLLAGAGIAVINVLLP-SLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALL 174 (395)
T ss_pred -cHHHHHHHHHHHHhhHHHHHHhhh-HHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHH
Confidence 234445555555555555544444 7888899865 589999999999999999999998888887 698888877777
Q ss_pred HHHHHHHH
Q psy7924 434 AALGAVFT 441 (481)
Q Consensus 434 ~~~~~~~~ 441 (481)
+++..++.
T Consensus 175 allAl~~W 182 (395)
T COG2807 175 ALLALLIW 182 (395)
T ss_pred HHHHHHHH
Confidence 76655543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0001 Score=72.03 Aligned_cols=160 Identities=14% Similarity=0.074 Sum_probs=99.8
Q ss_pred hHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccc
Q psy7924 279 VFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 356 (481)
Q Consensus 279 ~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (481)
..+..++.+..+++. .+......+....-+..+++|+++|+ +||++.+..+.++..++..++.+... +.... ...
T Consensus 8 aiLvlYl~~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~-~~~~~--~~~ 84 (654)
T TIGR00926 8 TILVLYFLNFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAI-PSSGH--PLH 84 (654)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccC-ccccc--chH
Confidence 334444555567765 33445555555566777888999996 69999999998888888877655211 00000 001
Q ss_pred chhHHHHHHHHHHHHhhccCchhhhhhcccCccc---chhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-------cCChh
Q psy7924 357 GWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ---IKGIAVSIACLFNWVSVLVVTKFFGDVTLLL-------GGHGA 426 (481)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------g~~~~ 426 (481)
....++.+.+...+.+..-+.. .+...|.++++ .|.+...+.+...++|+.+++.+.+.+.+.. +|...
T Consensus 85 ~~~~l~gLaLia~G~GgiKp~v-saf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~a 163 (654)
T TIGR00926 85 DLLDLLGLALIALGTGGIKPCV-SAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLA 163 (654)
T ss_pred HHHHHHHHHHHHhhccccccCc-hhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHH
Confidence 1122333333333333333334 47777888754 3677888899999999999999998876543 46667
Q ss_pred HHHHHHHHHHHHHHHH
Q psy7924 427 FWIFSVIAALGAVFTY 442 (481)
Q Consensus 427 ~~~~~~~~~~~~~~~~ 442 (481)
|.+.+++++++.++..
T Consensus 164 F~i~~i~m~ia~lvf~ 179 (654)
T TIGR00926 164 FGVPAILMILALIVFM 179 (654)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777666666655543
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.12 E-value=7.5e-05 Score=68.91 Aligned_cols=124 Identities=17% Similarity=0.186 Sum_probs=74.4
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGR-RILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
.....+.+.++++.|++. +.+.......+..+++.+++|.++||.++ |+.+.+..++.++.......
T Consensus 19 G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~----------- 87 (400)
T PF03825_consen 19 GAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF----------- 87 (400)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 444556677788889987 77889999999999999999999999864 66666655655554444332
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKF 413 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 413 (481)
.+..+.......++..+. ....++.-++..+... +++.-.|-....+.+|-+++...
T Consensus 88 ~~~f~~~~~~~~l~~~~~-~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 88 SSSFWWLFVIMLLFSFFF-SPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred hccHHHHHHHHHHHHHHH-ccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 223333444344443332 2223344444444443 23444555555556665555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.6e-05 Score=68.64 Aligned_cols=164 Identities=24% Similarity=0.231 Sum_probs=104.5
Q ss_pred hHhhHH-HhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH----hCC-hHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q psy7924 279 VFYTVK-IFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR----LGR-RILLLVSAVIMALSTLTMGYYFYLKNSGS 351 (481)
Q Consensus 279 ~~~~~~-~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (481)
..|+.+ +.+..|+++ .++.+..+.=+...+.-++.|.++|| +|| |+.++.+.+..++...++... ++ .+
T Consensus 32 ~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~~---p~-~~ 107 (467)
T COG2211 32 VLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFIT---PD-FS 107 (467)
T ss_pred HHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHcC---CC-cc
Confidence 334444 445578887 56777777778889999999999997 465 445566666666665555432 11 11
Q ss_pred CccccchhHHHHHHHHHHHHhhccCchhhhhhcccC-cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-------C
Q psy7924 352 DVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF-PSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-------G 423 (481)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-------~ 423 (481)
.........+...++..+++....|.. ++.+|+- .+++|.+..+.-..+..+|..+...+.+++....+ |
T Consensus 108 -~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g~~~~~~g~ 185 (467)
T COG2211 108 -MTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFGGGDKALGY 185 (467)
T ss_pred -cCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhhH
Confidence 023334455556666777777666665 6666765 46789999999998998988888887777766543 3
Q ss_pred ChhHHHHHHHHHHHHHHHHHhccCC
Q psy7924 424 HGAFWIFSVIAALGAVFTYILVPET 448 (481)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~ 448 (481)
+....+++++..+..+++++-.+|+
T Consensus 186 ~~~~~~~~vi~~i~~l~~~~~v~ER 210 (467)
T COG2211 186 QGTALVLGVIGVILLLFCFFNVKER 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3344444444444555555554554
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=69.93 Aligned_cols=121 Identities=13% Similarity=0.042 Sum_probs=66.4
Q ss_pred HhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHh----CChHHH-HHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 280 FYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRL----GRRILL-LVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 280 ~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~----grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
+..+++.+..|++. ..+....+..+...+..++.|+++||. |||+.. ..+.+...+....+... +.... .
T Consensus 30 ~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~ 105 (448)
T PRK09848 30 FLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWV---PTDWS-H 105 (448)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHHHHHHHhC---cCCCC-c
Confidence 34455555678887 667888888899999999999999996 666644 45555444433332111 10000 0
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccC-cccchhhHHHHHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF-PSQIKGIAVSIACLFNWV 405 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-p~~~r~~~~g~~~~~~~~ 405 (481)
............+...+++....+.. ++..|+. ++++|.+..+.-.....+
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~-al~~~~~~~~~~r~~~~~~r~~~~~~ 157 (448)
T PRK09848 106 SSKVVYAYLTYMGLGLCYSLVNIPYG-SLATAMTQQPQSRARLGAARGIAASL 157 (448)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccHh-hhhhhhcCCHHHHHHHHHHHHHHHHH
Confidence 11112223333444445555444443 4445544 446777765554433333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.2e-05 Score=66.83 Aligned_cols=119 Identities=14% Similarity=0.140 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhC-----ChHHHH-HHHHHHHHHHHHHHHHHhhcCC-CCCccccchh----HHHHHHHHHHHHhh
Q psy7924 305 IMMVTTWIATMIVDRLG-----RRILLL-VSAVIMALSTLTMGYYFYLKNS-GSDVSNIGWL----PLGSLCVFIIVFSL 373 (481)
Q Consensus 305 ~~~~~~~~~g~l~d~~g-----rr~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~ 373 (481)
...+.++..|+.+|+.+ ||..++ .+...+..+............. ....+...+. ....+.+++.+.+.
T Consensus 26 ~~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~ 105 (403)
T PF03209_consen 26 LVAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHA 105 (403)
T ss_pred HHHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhH
Confidence 34567889999999998 776554 5555555555544443322222 1111112221 22233334444433
Q ss_pred ccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 374 GFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 374 ~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
...+.. ++++|..|+++|+++.++.....-+|.+++..+.+.+++.+...
T Consensus 106 s~T~~l-ALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~ 155 (403)
T PF03209_consen 106 SGTSFL-ALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPE 155 (403)
T ss_pred hHHHHH-HHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHH
Confidence 333443 78889999999999999999999999999999999888876543
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00019 Score=62.13 Aligned_cols=360 Identities=14% Similarity=0.090 Sum_probs=186.5
Q ss_pred CcccCchhhH-HHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhcccc
Q psy7924 21 PFLVTESDLS-FIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 99 (481)
Q Consensus 21 ~~~~~~~~~~-~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G 99 (481)
|.|+++.|.. -+.-+..-.+.+...+.=.+.|..--|++++.-.+.......+..+.++.+ .+ =+.-+.- |
T Consensus 35 ~~NlT~~~l~~evyPvwTYSYLv~LvpvFlLTD~lrYKPvivlq~ls~v~~w~~lv~g~sV~--~m----QvlE~Fy--G 106 (433)
T KOG3810|consen 35 DKNLTEDQLTNEVYPVWTYSYLVGLVPVFLLTDYLRYKPVVVLQALSGVPVWIMLVFGPSVK--AM----QVLEFFY--G 106 (433)
T ss_pred CCCccHHHHhcccccchhHHHHHHHHHHHHHhhhhhcceeeeeeccchhHHHHHHHhcCCch--he----eeehhhc--C
Confidence 5677766653 233333444556666666788999999999988777777777777777777 55 4555555 5
Q ss_pred ccceeeeeeccc------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhh
Q psy7924 100 RKNTMLLLAVPS------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEA 173 (481)
Q Consensus 100 ~~~~~~~~~~~~------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
...+.-..--.. ++++-++.+...... -.|...+..++..... ....
T Consensus 107 ~~tAaEIAYysYIYs~Vd~~~Yqrvt~y~RaA~--------------------L~g~~~g~vlaQlLvs-------~~~~ 159 (433)
T KOG3810|consen 107 PATAAEIAYYSYIYSKVDPEMYKRVTGYCRAAF--------------------LVGKFVGSVLAQLLVS-------LETL 159 (433)
T ss_pred hHHHHHHhhhheeeeecCHHHHHHHHHHhHHHH--------------------HHHhHHHhHHHHHHhh-------hccc
Confidence 544322111111 677777777777777 5555555555522110 1233
Q ss_pred HHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcC
Q psy7924 174 SVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFST 253 (481)
Q Consensus 174 ~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (481)
++..+-.+......+.....+++|..+|.+..+.+.++.. ..+..+.+. ..+..+.. ......-..++.+..++
T Consensus 160 sy~~LN~ISL~~~~ia~~~A~fLP~v~rSl~f~~~~~~~~--v~~~e~~~~--~~~~~~~l--~~~~~~l~~~l~~~y~n 233 (433)
T KOG3810|consen 160 SYTTLNYISLAEVTIAVLLALFLPRVKRSLYFHRLEDKIS--VGDLEEMNP--QASYMSYL--RGAFVLLWRDLQECYSN 233 (433)
T ss_pred chhhhchhhHHHHHHHHHHHhhCCCCchhhhhhcccccce--eccchhcCc--cchhhHHH--HHHHHHHHHHHHHHhcC
Confidence 4555555555555555566667887776554444333211 000000000 00000000 00000112234455566
Q ss_pred cchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH--H
Q psy7924 254 PAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLN---PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLL--V 328 (481)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~--~ 328 (481)
|+..+ ..++.....+++.-+..|...+-++..-++. .+..-.+..+.++++.+..|++--++.|..-+. .
T Consensus 234 p~ll~-----WSlWwAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~~~~~~g~l~i~w~r~g~~ll~~ 308 (433)
T KOG3810|consen 234 PRLLK-----WSLWWALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAIAALAAGYLNINWNRWGDLLLAV 308 (433)
T ss_pred chhhh-----hHHHHHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHHHHHHHHheeeccchhhHHHHHH
Confidence 54322 2233344444556666676666555432211 133455566778888888998866666653332 3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHH
Q psy7924 329 SAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVL 408 (481)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~ 408 (481)
+.+..+...+.+.. +++.|.......++...+........ .-+++....+.-|...|+..++.-+-..
T Consensus 309 ~s~~~agllf~m~~-----------t~~Iw~~Ya~yvlfr~~y~l~itiA~-~~iA~nL~~e~~gLvFGiNTFvAl~lQs 376 (433)
T KOG3810|consen 309 GSAVQAGLLFIMAQ-----------TQHIWVCYAGYVLFRVIYQLTITIAT-FQIARNLSSELFGLVFGINTFVALILQS 376 (433)
T ss_pred HHHHhhhhhhhhhc-----------ccceehhhhhHHHHHhhHhhhhhHHH-HHHHHhhhhhhheeeeehHHHHHHHHHH
Confidence 32222222222211 34566667777777666665544333 3444555666667777877665554444
Q ss_pred HHHhHHHHHHHhhc-----------CChhHHHHHHHHHHHHHHH
Q psy7924 409 VVTKFFGDVTLLLG-----------GHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 409 ~~~~~~~~~~~~~g-----------~~~~~~~~~~~~~~~~~~~ 441 (481)
+...+ +.|..| +..-|.+.+++.++...+.
T Consensus 377 ilT~i---Vvd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 377 ILTLI---VVDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred hheEE---EEcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence 43333 233222 2233556666666655543
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.02 E-value=3.7e-06 Score=56.49 Aligned_cols=58 Identities=19% Similarity=0.292 Sum_probs=49.4
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhh
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVP 66 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~ 66 (481)
|-..|.+|...+ +.|++..|+|.+.++..+...++.+++|.++||+++++..+....+
T Consensus 17 g~~~Pfl~~~~~---~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 17 GCLYPFLPLYLK---QLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHhhhhHhhh---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 334566666667 8999999999999999999999999999999999999987765543
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.97 E-value=1.2e-05 Score=71.72 Aligned_cols=82 Identities=15% Similarity=0.066 Sum_probs=63.7
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~ 100 (481)
.+|.++++.++..+.+..+..+|.++.+++.||+|+|+++.++..+..++.++....++.. .. .+-++. |+
T Consensus 172 ~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~--~~-----~~~~l~--g~ 242 (310)
T TIGR01272 172 ALGLPEDQAAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLSIGAALTHGYV--AM-----WFVLAL--GL 242 (310)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCHH--HH-----HHHHHH--HH
Confidence 4789999999999999999999999999999999999999888888777766555544332 22 233355 77
Q ss_pred cceeeeeeccc
Q psy7924 101 KNTMLLLAVPS 111 (481)
Q Consensus 101 ~~~~~~~~~~~ 111 (481)
+.+..+|....
T Consensus 243 ~~s~i~P~~~s 253 (310)
T TIGR01272 243 FNSIMFPTIFS 253 (310)
T ss_pred HHHHHHHHHHH
Confidence 77777766554
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00091 Score=61.29 Aligned_cols=40 Identities=10% Similarity=-0.039 Sum_probs=32.6
Q ss_pred hhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy7924 381 MLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL 420 (481)
Q Consensus 381 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 420 (481)
++-+.+.+|..-|+.+-+.|+..|+|+---..+.-++.|.
T Consensus 428 AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 428 AFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 6777889999999999999999999987766665555553
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00035 Score=65.49 Aligned_cols=157 Identities=17% Similarity=0.145 Sum_probs=95.2
Q ss_pred hhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc
Q psy7924 281 YTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-----GRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS 354 (481)
Q Consensus 281 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-----grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (481)
..+++.+++|.++ +.........+ --...++.|.++|.+ .||+.++++.++..++...++.... . .
T Consensus 12 ~~~~l~~~l~ls~~~~~~~~~~~~l-Pw~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~---~----~ 83 (433)
T PF03092_consen 12 IYPFLKDDLGLSPAQLQRLSSLASL-PWSIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA---S----E 83 (433)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHhC-chHHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc---c----c
Confidence 3455667788875 22222222222 234557889999986 3555566666666555555544311 0 0
Q ss_pred ccchhHHHHHHHHHHHHhhccCchhhhhhcccC---cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHH
Q psy7924 355 NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIF---PSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFS 431 (481)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~---p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (481)
.+.....+.+.+...+....- ...-+...|.. |.+ |+...+.......+|+.++..+.|.+.+..+++..|.+.+
T Consensus 84 ~s~~~~~~~l~la~~g~a~~D-V~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~~ 161 (433)
T PF03092_consen 84 SSAAIAVVLLFLASFGYAFAD-VAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLISA 161 (433)
T ss_pred chhhhHHHHHHHHHHHHHHHH-HhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHHH
Confidence 111222222222222222222 22224555654 444 7888899999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHhccC
Q psy7924 432 VIAALGAVFTYILVPE 447 (481)
Q Consensus 432 ~~~~~~~~~~~~~~~~ 447 (481)
.+..+..+...+..+|
T Consensus 162 ~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 162 ALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHhhhh
Confidence 8877777766666666
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00025 Score=47.65 Aligned_cols=59 Identities=15% Similarity=0.280 Sum_probs=48.1
Q ss_pred hhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy7924 274 GINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVI 332 (481)
Q Consensus 274 ~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~ 332 (481)
.......|.+.+.++.|++. +.+....+..+..+++.+++|.++||.++++........
T Consensus 15 ~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~ 74 (77)
T PF12832_consen 15 ALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF 74 (77)
T ss_pred HHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence 34556667777788899998 778889999999999999999999999998877655443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00087 Score=60.50 Aligned_cols=121 Identities=16% Similarity=0.084 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccch--hHHHHHHHHHHHH
Q psy7924 294 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW--LPLGSLCVFIIVF 371 (481)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 371 (481)
.+.+...++.+..++..+.+-|+.||+|-|....++..+.+++..+=....... .++..+ .....-.+.....
T Consensus 80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~-----v~~~f~~~l~~~Gq~iaa~Aq 154 (480)
T KOG2563|consen 80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPF-----VPPLFRRPLTHTGQSIAAAAQ 154 (480)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCcc-----ccccchhhhhHHhHHHHHHhh
Confidence 445688888899999999999999999999999999999999888765532110 012222 2222222221111
Q ss_pred hhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHh
Q psy7924 372 SLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLL 420 (481)
Q Consensus 372 ~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~ 420 (481)
.....++.-...-.||+++|+++..+..+.+.+|.+++..+-+.+..+
T Consensus 155 -~Fim~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~ 202 (480)
T KOG2563|consen 155 -PFILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPS 202 (480)
T ss_pred -hHhhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCC
Confidence 111122223444569999999999999999889888887776655543
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00052 Score=60.24 Aligned_cols=42 Identities=10% Similarity=-0.113 Sum_probs=36.2
Q ss_pred hhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 381 MLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 381 ~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
+..+.+.|++..|+.+.+.|+..++|+---..+..++.|..+
T Consensus 392 af~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 392 AFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 677889999999999999999999999888777777777543
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0013 Score=62.10 Aligned_cols=144 Identities=15% Similarity=0.166 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhcc
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA-LSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGF 375 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (481)
+...+..+...+..++.|-++|+-++||.++..+...+ ++...+.+. . ++..+...+..++...++....
T Consensus 74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~~~~~~~l~~v---~------~~~~~~~~~l~iia~v~~~~~~ 144 (477)
T PF11700_consen 74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLGVLATALLWFV---S------PGQWWLALVLFIIANVGYEASN 144 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHh---C------cchHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888999999999988776655544443 444444332 1 1222333333344444444433
Q ss_pred CchhhhhhcccCcccch--------------------------hhHHHHHHHHHHHHHHHHHhHHHHHHHhh--------
Q psy7924 376 GPIPWMLVGEIFPSQIK--------------------------GIAVSIACLFNWVSVLVVTKFFGDVTLLL-------- 421 (481)
Q Consensus 376 ~~~~~~~~~e~~p~~~r--------------------------~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------- 421 (481)
. ...++++|+.+++.+ ++..+.....+++|+.+.-.+.-.+....
T Consensus 145 v-fyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~ 223 (477)
T PF11700_consen 145 V-FYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTW 223 (477)
T ss_pred H-HHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccch
Confidence 3 334788899988888 99999999999999888766544333222
Q ss_pred cCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 422 GGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 422 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
..+..+.+.++..++..+..+++.|++++
T Consensus 224 ~~r~~~~~~a~ww~vfsiP~~~~~~~~~~ 252 (477)
T PF11700_consen 224 AIRVAFLIVALWWLVFSIPLFLWLPDRPG 252 (477)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 23556777777777777777778887654
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.6e-05 Score=67.02 Aligned_cols=143 Identities=13% Similarity=0.041 Sum_probs=96.3
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~ 100 (481)
++|+++.+..++.-...+..++|+++.|+|.||+|.|+++.+++++..+.++...+...-. .+ .+.-.+. |.
T Consensus 282 ~~gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~--~f----~i~gll~--g~ 353 (438)
T COG2270 282 DLGLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFLEGEL--DF----WILGLLV--GT 353 (438)
T ss_pred HcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHccccH--HH----HHHHHHH--HH
Confidence 8999999999999999999999999999999999999999999999888888776654433 23 3333344 55
Q ss_pred cceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhh
Q psy7924 101 KNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEA 173 (481)
Q Consensus 101 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 173 (481)
..|......-+ +++-+...+++++.- -.+..+++.+-... .. ...
T Consensus 354 s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltg--------------------ra~S~~gp~lv~v~------t~--iTg 405 (438)
T COG2270 354 SLGGAQASSRSYLARLVPKGKEGRFFGLYALTG--------------------RAASFLGPFLVAVI------TQ--ITG 405 (438)
T ss_pred hcchHHHHHHHHHHHhCCCccccceeehhhhhh--------------------hHHHHHHHHHHHHH------HH--Hhc
Confidence 55555544444 556677777776666 55555555544111 11 123
Q ss_pred HHHHHHHHhhHHHHHHHHHHhccCCC
Q psy7924 174 SVYGLSIICALLPIFFVGLMLLMPES 199 (481)
Q Consensus 174 ~w~~~~~~~~~~~~~~~~~~~~~~es 199 (481)
+-|.-+....++..+.++..+.+|+.
T Consensus 406 ~~r~g~~~i~vll~iGl~~L~~v~~~ 431 (438)
T COG2270 406 SSRAGVLSIIVLLLIGLLLLLRVKVP 431 (438)
T ss_pred chhhHHHHHHHHHHhhHhhEEeecCC
Confidence 35555555555555555555566653
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.6e-05 Score=67.53 Aligned_cols=142 Identities=18% Similarity=0.172 Sum_probs=94.4
Q ss_pred cccccccccCCCCcccCc--hhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHH--hHHhH
Q psy7924 9 SPAGDRLIAGEYPFLVTE--SDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSS--MALGA 84 (481)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~--~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 84 (481)
.+..+.+.. +++.+. .+.++..+.+.++..++.++.|.++||+|||+.+..+......+.+.+.+..+ .. .
T Consensus 22 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 96 (338)
T COG0477 22 SPALPLLLS---TLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLA--L 96 (338)
T ss_pred HHHHHHHHH---HcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCccchHH--H
Confidence 344455555 555555 57899999999999999999999999999998888888766666667777666 56 7
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc------cc--cccchhhhhhH-HHHHHHhhhccccccccccccccchhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS------FD--IRPLLGETSQV-TVWVLISTTNRRISDKCFVGSDHLAILCPIS 155 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~------~~--~r~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~ 155 (481)
+ ++.|+.. |++.+...+.... ++ +|+...+.... .. ..|..+++.
T Consensus 97 ~----~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~ 150 (338)
T COG0477 97 L----LILRLLQ--GLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAG--------------------ALGLALGPL 150 (338)
T ss_pred H----HHHHHHH--HhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH--------------------HHHHHHHHH
Confidence 7 8899988 8888755444433 32 45555555444 23 455555553
Q ss_pred hhhhhhhhhHhhccchhhHHHHHHHHhhHHHHH
Q psy7924 156 ISQSRRLAQVIKERKFEASVYGLSIICALLPIF 188 (481)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 188 (481)
++... ... ...+||..+.+.......
T Consensus 151 ~~~~~------~~~-~~~~~~~~~~~~~~~~~~ 176 (338)
T COG0477 151 LAGLL------LGA-LLWGWRAAFLLAALLGLL 176 (338)
T ss_pred HHHHH------HHH-HhcchHHHHHHHHHHHHH
Confidence 33111 111 456788866666555543
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0071 Score=47.15 Aligned_cols=106 Identities=12% Similarity=0.087 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccC
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (481)
....+......+.+++.+.+.+++|.|+.++++.+...+-...... .+.+..+....+.+++.+..+.
T Consensus 41 ~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~------------~~~~~l~~~s~l~G~~~a~lW~ 108 (156)
T PF05978_consen 41 YSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY------------PNSYTLYPASALLGFGAALLWT 108 (156)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHHhhhhHHhhH
Confidence 3555666677888889999999999999999998888766555432 2335556666677777777666
Q ss_pred chhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHH
Q psy7924 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG 415 (481)
Q Consensus 377 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~ 415 (481)
... .++.+...++.|++..++...+.+.+..+|..+.-
T Consensus 109 aqg-~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~ 146 (156)
T PF05978_consen 109 AQG-TYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLF 146 (156)
T ss_pred hhh-HHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 665 77888888899999999888888877777766543
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0088 Score=56.08 Aligned_cols=112 Identities=10% Similarity=-0.004 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc--------------------cchhHHHHHHH
Q psy7924 307 MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN--------------------IGWLPLGSLCV 366 (481)
Q Consensus 307 ~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~ 366 (481)
++..++.+++++|++|++.+............++++..+...+..+++. ..|......+.
T Consensus 58 ~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~ 137 (472)
T TIGR00769 58 VIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVM 137 (472)
T ss_pred HHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHH
Confidence 3336788999999999999888887777777777766543332211000 01222222222
Q ss_pred HHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH
Q psy7924 367 FIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT 418 (481)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~ 418 (481)
...........+.|.+++|.+.+++-.+-.++....+++|..+++.+...+.
T Consensus 138 ~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~ 189 (472)
T TIGR00769 138 AELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFS 189 (472)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222333377899999999999999999999999999999998887765
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=97.64 E-value=3.2e-05 Score=69.42 Aligned_cols=69 Identities=17% Similarity=0.141 Sum_probs=52.2
Q ss_pred ccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhc----cccchhhhhh-hhhhHHHHhHHHHHHHHhH
Q psy7924 10 PAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVD----TVGRKNTMLL-LAVPTVTESDLSFIGSSMA 81 (481)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d----~~Grr~~~~~-~~~~~~~~~~~~~~~~~~~ 81 (481)
..+|.+.. ++|++....+.+--.--+...+.+|+.|..+| ||||||-++. +.+...++..+..++.++.
T Consensus 53 sy~tPyl~---~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~~i~~~l~Lig~aaDig 126 (498)
T KOG0637|consen 53 SYLTPYLQ---SLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSLLIAVSLFLIGYAADIG 126 (498)
T ss_pred ccccHHHH---HcCCCcccccccccccccccceecccccccccccccccccccchHHHhhHHHHHHHhhhhhHhhhh
Confidence 44556666 78888888888888888888999999999999 6899876554 4555666666677766554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.003 Score=59.01 Aligned_cols=57 Identities=11% Similarity=0.047 Sum_probs=36.3
Q ss_pred cchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhH
Q psy7924 356 IGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKF 413 (481)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 413 (481)
+.+..++...+++...+.. ......+.++..++++|..+-.+....-.+|-.+|..+
T Consensus 371 ~d~~~~~~~~l~gltnGy~-~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l 427 (437)
T TIGR00939 371 GDAYFIILMLLFGFSNGYL-GSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVL 427 (437)
T ss_pred ccHHHHHHHHHHHHhhhHH-HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555554443332 34444677888888999888888777777777666654
|
|
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.60 E-value=8.7e-06 Score=77.77 Aligned_cols=143 Identities=12% Similarity=0.025 Sum_probs=1.0
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC---
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS--- 351 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 351 (481)
.......+.+.++++++. +.+.+....-++..+..++..++.+|..|-+.+-.+.++++++.+++.+-.+...+..
T Consensus 20 g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y~~~~ 99 (539)
T PF03137_consen 20 GYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPYSYEE 99 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCCcccc
Confidence 333444566777788887 7788888888999999999999999988878888888999998888765322211100
Q ss_pred --------------------------------CccccchhHHHHHHHHHHHHhhc---cCchhhhhhcccCcccchhhHH
Q psy7924 352 --------------------------------DVSNIGWLPLGSLCVFIIVFSLG---FGPIPWMLVGEIFPSQIKGIAV 396 (481)
Q Consensus 352 --------------------------------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~e~~p~~~r~~~~ 396 (481)
............+++..+..+.+ ..++..+|+-|..+++..+...
T Consensus 100 ~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~splYi 179 (539)
T PF03137_consen 100 ASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNSPLYI 179 (539)
T ss_dssp ----------------------------------------------------SSS-------------------------
T ss_pred ccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccCccch
Confidence 00011111222222223333333 3456668999999999999999
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q psy7924 397 SIACLFNWVSVLVVTKFFGDVT 418 (481)
Q Consensus 397 g~~~~~~~~g~~~~~~~~~~~~ 418 (481)
|+.+....+|.++|-.+.+..+
T Consensus 180 Gi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 180 GILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp ----------------------
T ss_pred hhhhHHhhccHHHHHHHHHHHH
Confidence 9999998888888777766544
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0027 Score=53.16 Aligned_cols=25 Identities=16% Similarity=0.074 Sum_probs=17.9
Q ss_pred hhHHHHHHHHhhHHHHHHHHHHhcc
Q psy7924 172 EASVYGLSIICALLPIFFVGLMLLM 196 (481)
Q Consensus 172 ~~~w~~~~~~~~~~~~~~~~~~~~~ 196 (481)
..+|++++.+.+++.++-+++...+
T Consensus 37 ~~~W~~I~si~~lL~~IpLIly~if 61 (267)
T PF07672_consen 37 TNNWQWILSIFILLIFIPLILYIIF 61 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4569999998888877666555533
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.028 Score=52.85 Aligned_cols=52 Identities=8% Similarity=0.044 Sum_probs=42.1
Q ss_pred chhhHHHHHHHHHHHhhh-hhhhhhhhccccchhhhhhhhhhHHHHhHHHHHH
Q psy7924 26 ESDLSFIGSSMALGAVFG-SPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIG 77 (481)
Q Consensus 26 ~~~~~~~~s~~~~~~~~~-~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~ 77 (481)
.+.+.++-+...+..++. .++.+++++|++|++++.+....+....++.++.
T Consensus 42 ae~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~v 94 (472)
T TIGR00769 42 AEIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFV 94 (472)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHH
Confidence 357899999888877777 8999999999999999888777776666665544
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.019 Score=52.32 Aligned_cols=159 Identities=9% Similarity=-0.002 Sum_probs=92.1
Q ss_pred hhhHhhHHHhhh-cCCCC-chhH-HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 277 AVVFYTVKIFKD-AGSSL-NPNL-CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 277 ~~~~~~~~~~~~-~g~~~-~~~~-~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
.-.+..|++.+. .|++. +..- +.-...-..+..-++...+.|..+.|++++++.+...+...++.+
T Consensus 22 sEPfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~----------- 90 (412)
T PF01770_consen 22 SEPFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLF----------- 90 (412)
T ss_pred CCccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-----------
Confidence 344566777665 67775 2222 222222334556667788999999999999888877776666544
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCC--hhHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGH--GAFWIFS 431 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~--~~~~~~~ 431 (481)
..+...+.+.-+.++...+.- ..-++|+=...|+++-.++.+.+....-+|..++..+.-.+....+.. ....+ .
T Consensus 91 ~~sv~~mq~~q~~yg~~~a~e--vay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~~sy~~L~~i-s 167 (412)
T PF01770_consen 91 GTSVLAMQLMQFFYGLATAAE--VAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGGVSYFQLNYI-S 167 (412)
T ss_pred HCcHHHHHHHHHHHHHHHHHH--HHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH-H
Confidence 233344444445554443332 223355555677787788888888888888777777765554433322 22222 2
Q ss_pred HHHHHHHHHHHHhccCCC
Q psy7924 432 VIAALGAVFTYILVPETK 449 (481)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~ 449 (481)
......+.+..+++|..+
T Consensus 168 l~~~~~a~~~~~fLP~~~ 185 (412)
T PF01770_consen 168 LASVSLALLIALFLPMPK 185 (412)
T ss_pred HHHHHHHHHHHHHcCCCC
Confidence 233333344445566543
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=62.02 Aligned_cols=192 Identities=11% Similarity=0.040 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q psy7924 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL 338 (481)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~ 338 (481)
++.+..+..+.+......+......+-+.++++. ..+.+...+-++..+...+..+...|..|-+.+-.+.++++++.+
T Consensus 98 fl~~l~~~~~~q~l~~~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsl 177 (735)
T KOG3626|consen 98 FLVLLSLAAFAQGLYVGYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSL 177 (735)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHH
Confidence 3333334444333333444444556666677776 556666777788888888888888898888888889999988888
Q ss_pred HHHHHHhhcCCC-------------C---------------------Cc---cccchhHHHHHHHHHHHHhhc---cCch
Q psy7924 339 TMGYYFYLKNSG-------------S---------------------DV---SNIGWLPLGSLCVFIIVFSLG---FGPI 378 (481)
Q Consensus 339 ~~~~~~~~~~~~-------------~---------------------~~---~~~~~~~~~~~~~~~~~~~~~---~~~~ 378 (481)
+..+--+..+.. + .. .......++.+++..+..+.+ ..++
T Consensus 178 l~alPHf~~~~y~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tl 257 (735)
T KOG3626|consen 178 LFALPHFFSGPYEYELEVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTL 257 (735)
T ss_pred HHhChHHhcCcchhhhhhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccC
Confidence 877632111110 0 00 011111222222222333333 3455
Q ss_pred hhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhh-------------------cCChhHHHHHHHHHHHHH
Q psy7924 379 PWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLL-------------------GGHGAFWIFSVIAALGAV 439 (481)
Q Consensus 379 ~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~~~~ 439 (481)
..+|+-|...++......|+.+.+..+|.++|-.+.+.....+ .|+..|.+.+.+.++.++
T Consensus 258 GisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~ 337 (735)
T KOG3626|consen 258 GISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAV 337 (735)
T ss_pred CCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 6688989999888899999999999999888888777655421 133345556655555555
Q ss_pred HHHHhccCCCCCC
Q psy7924 440 FTYILVPETKGKT 452 (481)
Q Consensus 440 ~~~~~~~~~~~~~ 452 (481)
.. ++.|++..++
T Consensus 338 p~-f~fPk~lp~~ 349 (735)
T KOG3626|consen 338 PL-FFFPKELPKS 349 (735)
T ss_pred HH-HhCcccCccc
Confidence 54 4556655443
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.014 Score=56.43 Aligned_cols=71 Identities=11% Similarity=-0.017 Sum_probs=56.5
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGS 78 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~ 78 (481)
+|+....+..+.. ++|.+..++.-..+.+.-......+.+++++|. +||-+++.++.++..+|..+..++.
T Consensus 54 ~g~~~nlv~ylt~---~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a 125 (571)
T KOG1237|consen 54 FGLVSNLVTYLTL---ELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSA 125 (571)
T ss_pred hcchhHHHHHHHH---HhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666666 788888888888888888888888999999995 6999999999999988866655443
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.031 Score=51.86 Aligned_cols=148 Identities=14% Similarity=0.028 Sum_probs=79.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----HHHHHhhcCCCCCccccchhHHHHHHHHHHHH
Q psy7924 296 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT----MGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVF 371 (481)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (481)
+.....-.+..++.++..|.+.||..|.+....+.+..-++... +...+.....................+.+...
T Consensus 41 siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~ 120 (432)
T PF06963_consen 41 SIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPSSSSQSSWLFIALFALLILLGAIE 120 (432)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHH
Confidence 44555566677788888899999999988776665444333222 22222111111000011111122222222221
Q ss_pred hhccCchhhhhhcc------cC--cccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q psy7924 372 SLGFGPIPWMLVGE------IF--PSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYI 443 (481)
Q Consensus 372 ~~~~~~~~~~~~~e------~~--p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 443 (481)
....... ....| +. +++......+...-+-.+...++|.+.|.+.+..+......+.++..++...+-++
T Consensus 121 ~Las~~~--~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~ 198 (432)
T PF06963_consen 121 RLASIAN--TIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYF 198 (432)
T ss_pred HHHHhhh--hheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11111 12 33444555666666666789999999999988888877777777777776666554
Q ss_pred hc
Q psy7924 444 LV 445 (481)
Q Consensus 444 ~~ 445 (481)
++
T Consensus 199 ~l 200 (432)
T PF06963_consen 199 LL 200 (432)
T ss_pred HH
Confidence 44
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.024 Score=53.55 Aligned_cols=114 Identities=11% Similarity=0.067 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccc------------c--------chhHHHHHH
Q psy7924 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN------------I--------GWLPLGSLC 365 (481)
Q Consensus 306 ~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~--------~~~~~~~~~ 365 (481)
.++...+..+++++++|.+++-...........++++..+...+.-+++. - .|...+..+
T Consensus 72 a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv 151 (491)
T PF03219_consen 72 AILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYV 151 (491)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHH
Confidence 45556678899999999998888877777777777776543322211110 0 011111111
Q ss_pred HHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7924 366 VFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419 (481)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 419 (481)
..-...+.....+.|.+++|..+.++-.+-.++....+++|..+++.+...+.+
T Consensus 152 ~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 152 MAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111122222333568999999999999999999999999999999988877666
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0016 Score=55.03 Aligned_cols=96 Identities=17% Similarity=-0.010 Sum_probs=63.7
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHH-HhHHHHHHHHhHHhHhhhhhHHHHhhcccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVT-ESDLSFIGSSMALGAVFGSPVVGNLVDTVG 99 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G 99 (481)
.+|+|+...+.+.+....-.++.+++.|.++||+|++-....+..+..+ +-....++ ++ .- ..+..+. |
T Consensus 294 rfGlS~~~a~~i~s~vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft--~l--sP----y~~m~~l--G 363 (459)
T KOG4686|consen 294 RFGLSAVSAGNILSTVYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT--FL--SP----YTSMTFL--G 363 (459)
T ss_pred hhCCChhhccchhhhhhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh--hc--cH----HHHHHHH--h
Confidence 7899999999999988888899999999999999999877665444333 22222222 22 22 4445555 6
Q ss_pred cccee----eeeeccc---cccccchhhhhhHHH
Q psy7924 100 RKNTM----LLLAVPS---FDIRPLLGETSQVTV 126 (481)
Q Consensus 100 ~~~~~----~~~~~~~---~~~r~~~~~~~~~~~ 126 (481)
..... .+|..+. .++-|.+.+..+.-.
T Consensus 364 LsysllAcslWP~va~~vpE~qLGTaygf~qsIq 397 (459)
T KOG4686|consen 364 LSYSLLACSLWPCVASLVPEEQLGTAYGFIQSIQ 397 (459)
T ss_pred hhHHHHHHHHhhhhhhhCCHHHhcchHHHHHHHH
Confidence 65543 2333333 455677777766666
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.076 Score=47.39 Aligned_cols=138 Identities=20% Similarity=0.136 Sum_probs=80.6
Q ss_pred hhHHHhhhcCCCC---chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccc
Q psy7924 281 YTVKIFKDAGSSL---NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIG 357 (481)
Q Consensus 281 ~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (481)
..+.+..+.+.+. ..+.......+...++.++.|.+.||.|||+.+..+......+.+...+.. ....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~---------~~~~ 94 (338)
T COG0477 24 ALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAP---------NVGL 94 (338)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhCc---------cchH
Confidence 3444444443332 245566667777778889999999999999777777665344433333310 1012
Q ss_pred hhHHHHHHHHHHHHhhccCchhhhhhcccCcc-cchhhHHHHHHH-HHHHHHHHHHhHHHHHHHh--hcCChhHH
Q psy7924 358 WLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPS-QIKGIAVSIACL-FNWVSVLVVTKFFGDVTLL--LGGHGAFW 428 (481)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~-~~r~~~~g~~~~-~~~~g~~~~~~~~~~~~~~--~g~~~~~~ 428 (481)
+.........+.+.+ ...+....+..|.+|. +.|+...+.... ...++..+++.+.+.+... .+|+..+.
T Consensus 95 ~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (338)
T COG0477 95 ALLLILRLLQGLGGG-GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFL 168 (338)
T ss_pred HHHHHHHHHHHhhhH-HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 222222222333333 2334455788899987 678888888877 5677777777665555443 35555333
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0019 Score=58.50 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=90.8
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH----hCChHHHHHH-HH
Q psy7924 258 RGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR----LGRRILLLVS-AV 331 (481)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~----~grr~~~~~~-~~ 331 (481)
+.++....+.+..++.. ..-..|.+.+.++.|.+. -.+.+.....+.+++.+++.|..+|| +||||.++.. ..
T Consensus 32 ~~li~v~~ia~Gvqf~w-A~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFGW-ALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHHH-HHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 44455555555566553 333445555566678876 44556666668888999999999996 6887766544 44
Q ss_pred HHHHHHHHHHHHHhh----cCCCCCcc--ccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh-HHHHHHHHHH
Q psy7924 332 IMALSTLTMGYYFYL----KNSGSDVS--NIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI-AVSIACLFNW 404 (481)
Q Consensus 332 ~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~-~~g~~~~~~~ 404 (481)
...++.+++++.... .++...+. ......++.+.++-+.......|.= ++..|+...+.+.+ +.+....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~r-a~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCR-ALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHH-HHHHHhccChhhhhccchhHHHHHH
Confidence 445555544432211 12111100 0111223333334444444455554 78888887777777 8888888888
Q ss_pred HHHHHHHhHHH
Q psy7924 405 VSVLVVTKFFG 415 (481)
Q Consensus 405 ~g~~~~~~~~~ 415 (481)
+|+.++-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 88877665544
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.029 Score=51.81 Aligned_cols=115 Identities=10% Similarity=-0.076 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCccc---chhhHHHHHH
Q psy7924 324 ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQ---IKGIAVSIAC 400 (481)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~---~r~~~~g~~~ 400 (481)
+.+..+.++..++.+++.+......... ........+.+.+...+.+..=..+ ..+.+|.++++ .|.+.....+
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~--~~~~~~~~~gL~lia~G~G~~K~ni-~~~~~dq~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPS--GIQLGLFYIGLALIAVGTGGIKPNI-SPFGADQYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC--------CHHHHHHHHHHHHHHCCHHHH-HHHHHHCSSTTTTTHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhh--hHHHHHHHHHHHHHHhccccccccH-HHHHHHHhcccchhhhhhhHHHHH
Confidence 4667788888888887655432222110 1223445555555555554433344 47888988765 4667778889
Q ss_pred HHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q psy7924 401 LFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 401 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
...++|+.+++...+++.++.||...|.+.++..+++.+..
T Consensus 79 ~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f 119 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVF 119 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHH
Confidence 99999999999999999999999888887776666655544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.038 Score=37.64 Aligned_cols=68 Identities=21% Similarity=0.097 Sum_probs=57.7
Q ss_pred hhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH
Q psy7924 276 NAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY 343 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~ 343 (481)
+.+....|.+.++.+++. +.++..+...++..+|.+...++.++..+++.+..+.+...+..+.+++.
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~ 77 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT 77 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 445567888999999998 67888999999999999999999998888888888988888888887763
|
Note that many members are hypothetical proteins. |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.48 Score=43.19 Aligned_cols=22 Identities=23% Similarity=0.531 Sum_probs=11.5
Q ss_pred hHHHHHHHHHHHHHHHHHhccC
Q psy7924 426 AFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
.|...+.+..+.+++++...|+
T Consensus 184 ~yF~~s~~~~llC~i~y~~l~~ 205 (406)
T KOG1479|consen 184 IYFITSTVILLLCFVLYLVLPK 205 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHhhc
Confidence 4445555555555555554443
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.37 Score=43.89 Aligned_cols=104 Identities=10% Similarity=-0.014 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhh
Q psy7924 302 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWM 381 (481)
Q Consensus 302 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (481)
+++...+|.+...++-++ +||...+ ...+=.+..-++.+.-+.+... .-.+.++.++...+++...+ -...+...
T Consensus 292 fN~~d~vG~~~a~~~~~~-~~r~l~i-~v~lR~lfiPlF~~cn~~~~~v--~~~~~~~~~~l~~~lglsnG-Yltsl~m~ 366 (406)
T KOG1479|consen 292 FNVFDLIGSILAALLTWP-DPRKLTI-PVLLRLLFIPLFLLCNYPPLPV--VFESDGWFIFLMSLLGLSNG-YLTSLIMM 366 (406)
T ss_pred hHHHHHhhhhhhhcccCC-CCceehH-HHHHHHHHHHHHHHhccCCCCc--eecCchHHHHHHHHHHhccc-hHhhheeh
Confidence 667778886666655443 3343332 2222222222222111100000 01223444444444443322 23445557
Q ss_pred hhcccCcccchhhHHHHHHHHHHHHHHHH
Q psy7924 382 LVGEIFPSQIKGIAVSIACLFNWVSVLVV 410 (481)
Q Consensus 382 ~~~e~~p~~~r~~~~g~~~~~~~~g~~~~ 410 (481)
+.++.+|++++-.+-.+....-..|-..|
T Consensus 367 ~aPk~v~~~e~e~aG~~m~~fl~~Gl~~G 395 (406)
T KOG1479|consen 367 YAPKQVKPSEKEAAGNLMVFFLVGGLALG 395 (406)
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888887655544444444443333
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.016 Score=45.22 Aligned_cols=91 Identities=9% Similarity=-0.067 Sum_probs=65.9
Q ss_pred ccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccccc
Q psy7924 23 LVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKN 102 (481)
Q Consensus 23 ~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~~~ 102 (481)
++++..--.-.++......+++++.+.+.+++|.|+.+.++.+.+.+-.... +-++.+ .+ +.+-.+. |++.
T Consensus 33 ~i~~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~-~~~~~~--~l----~~~s~l~--G~~~ 103 (156)
T PF05978_consen 33 SISAGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASF-FYPNSY--TL----YPASALL--GFGA 103 (156)
T ss_pred cccccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HhhhHH--HH----HHHHHHH--hhhh
Confidence 3444444445666777788888999999999999999999999888655443 445556 67 8888889 9999
Q ss_pred eeeeeeccc-------cccccchhhhh
Q psy7924 103 TMLLLAVPS-------FDIRPLLGETS 122 (481)
Q Consensus 103 ~~~~~~~~~-------~~~r~~~~~~~ 122 (481)
+..++.... ++.+++..++.
T Consensus 104 a~lW~aqg~ylt~~s~~~~~~~~~~if 130 (156)
T PF05978_consen 104 ALLWTAQGTYLTSYSTEETIGRNTGIF 130 (156)
T ss_pred HHhhHhhhHHHHHcCCHHHHhhHHHHH
Confidence 888877654 45555554443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.18 Score=46.13 Aligned_cols=132 Identities=17% Similarity=0.237 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCc
Q psy7924 298 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGP 377 (481)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (481)
+...-.+-.++..+++.++.+|+.-+.-......++.+++++.++ +.+.+.-++...+.....+.+ -
T Consensus 64 Vlladi~P~l~~Kl~aP~fi~~v~y~~Ri~~~~~l~~~g~l~va~-----------~~~v~~~l~Gv~las~ssg~G--E 130 (402)
T PF02487_consen 64 VLLADILPSLLVKLIAPFFIHRVPYWIRILICVALSAAGMLLVAF-----------SPSVWVRLLGVVLASLSSGLG--E 130 (402)
T ss_pred HHHHHHHHHHHHHHHhHhhhhhccchHHHHHHHHHHHHHHhheee-----------ccchhHHHHHHHHHhhhhhhh--H
Confidence 444444556777788899999987655555666677777777655 233344445444444443333 3
Q ss_pred hhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcC--ChhHHHHHHHHHHHHHHHHHhccC
Q psy7924 378 IPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGG--HGAFWIFSVIAALGAVFTYILVPE 447 (481)
Q Consensus 378 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~ 447 (481)
+...-....+|+. ..+-.......++.+|+...-.+.+ .|. +.++.+...+.++..+..++.+|+
T Consensus 131 ~tfL~lt~~y~~~----~l~~wssGTG~aGl~Ga~~y~~lT~-~g~s~~~tll~~~~lp~~~~~~~f~~L~~ 197 (402)
T PF02487_consen 131 VTFLSLTHFYGKS----SLSAWSSGTGGAGLVGALYYLGLTT-LGLSPRTTLLIMLVLPAIFLLSYFFLLPS 197 (402)
T ss_pred HHHHHHHHhcCcc----ccccccCCcChhhHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3323334566643 2333333333445555555443333 444 445555555554444444444543
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.0046 Score=57.28 Aligned_cols=137 Identities=13% Similarity=0.026 Sum_probs=102.2
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhccccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGR 100 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G~ 100 (481)
|.+-.+...|........+-.+.-++.+++..|+|+-+++..++....+=.+.....+|.| +. +...+++ |+
T Consensus 400 d~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W--~v----LPieilq--gi 471 (618)
T KOG3762|consen 400 DLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYLQNPW--MV----LPIEILQ--GI 471 (618)
T ss_pred hcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHhcCch--he----eeHHHHH--HH
Confidence 5665666677777777788888889999999999999999999999999999999999999 98 9999999 99
Q ss_pred cceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccc-cccchhhhhhhhhhhhhhhhHhhccchh
Q psy7924 101 KNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVG-SDHLAILCPISISQSRRLAQVIKERKFE 172 (481)
Q Consensus 101 ~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~~~~~~~~~~~~~~~~~~~ 172 (481)
..+..+..... ++.|..+-++.+... .| +.++|.+++..+. ..
T Consensus 472 t~aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f----------------~GlG~g~GslIGG~~v-------------~~ 522 (618)
T KOG3762|consen 472 THALIWAAIISYASHVAPPGLRATAQGLLQGIF----------------HGLGKGLGSLIGGFVV-------------ER 522 (618)
T ss_pred HHHHHHHHHHHHHHhhCCCcchHHHHHHHHHHh----------------cccCcchhhhhhhhhh-------------ee
Confidence 99887766655 555555555444333 11 2244555554444 56
Q ss_pred hHHHHHHHHhhHHHHHHHHHHh
Q psy7924 173 ASVYGLSIICALLPIFFVGLML 194 (481)
Q Consensus 173 ~~w~~~~~~~~~~~~~~~~~~~ 194 (481)
.+=|..|...++.+++.+++..
T Consensus 523 fg~~ttf~~~giAcl~~l~~~~ 544 (618)
T KOG3762|consen 523 FGARTTFRIFGIACLVTLALFI 544 (618)
T ss_pred ehhHHHHHHHHHHHHHHHHHHH
Confidence 6777888887777776665554
|
|
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.2 Score=46.28 Aligned_cols=102 Identities=12% Similarity=-0.028 Sum_probs=65.7
Q ss_pred hhhhhhhhhHHHHhHHHHHHHHhH-------HhHhhhhhHHHHhhccccccceeeeeeccc----------cccccchhh
Q psy7924 58 NTMLLLAVPTVTESDLSFIGSSMA-------LGAVFGSPVVGNLVDTVGRKNTMLLLAVPS----------FDIRPLLGE 120 (481)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~----------~~~r~~~~~ 120 (481)
|+++++.++..+|.++..++.... .+.+ .++-++. ++|.|..=+.... +++|.....
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~----~~gL~li--a~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLF----YIGLALI--AVGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHH----HHHHHHH--HHHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHH----HHHHHHH--HhccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 567788888888888866654322 1144 6777777 7777766555544 234445555
Q ss_pred hhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHh
Q psy7924 121 TSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLML 194 (481)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 194 (481)
.+..+. ++|..++.... .......+|.+.|.+.++..++..+..+
T Consensus 76 ~fY~~i--------------------n~G~~~~~~~~---------~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 76 WFYWGI--------------------NIGSLFSPTLV---------PYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHH--------------------HHHHHHHHHCC---------CHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--------------------hhhhHhhcccc---------hhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 666666 88888887766 2333668999999998887776666554
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.0023 Score=57.14 Aligned_cols=114 Identities=9% Similarity=0.005 Sum_probs=2.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhcCCC--CCccccchhHHHHHHHHHHHHhhc
Q psy7924 298 CTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALSTLTMGYYFYLKNSG--SDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 298 ~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
....++++..+|+.+..+..-+. .+|++. ...+.=.+...++...-..+.+. +..-.+.+..++...++++..+.
T Consensus 187 ~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~~~~~~~~~~d~~~~i~~~l~g~TNGy- 264 (309)
T PF01733_consen 187 LFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRPRYLPVLFNSDAWFIILMLLFGFTNGY- 264 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhcccccCCCcccchHHHHHHHHHHHHccch-
Confidence 45567888899999887643221 233333 22222222222221111111100 00012334444444444433322
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhH
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKF 413 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~ 413 (481)
.......+.++..++++|..+-.+....-.+|-.+|..+
T Consensus 265 l~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~l 303 (309)
T PF01733_consen 265 LSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVL 303 (309)
T ss_dssp --HHHH---------------------------------
T ss_pred hhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555778888888888877777766666666655544
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.7 Score=40.68 Aligned_cols=115 Identities=12% Similarity=0.026 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcc-------------cc--------chhHHHH
Q psy7924 305 IMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVS-------------NI--------GWLPLGS 363 (481)
Q Consensus 305 ~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~--------~~~~~~~ 363 (481)
+.++..++..++.+++.|.+++.........+.+++++..+...+..+++ .- .|...+.
T Consensus 74 ~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~~~ili~~~Ws~s~~ 153 (509)
T COG3202 74 SAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLKWFILIVGEWSYSLF 153 (509)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccceeeeEeecchHHHHH
Confidence 45667778889999999999988888888888888887666433322111 10 1222222
Q ss_pred HHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7924 364 LCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419 (481)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 419 (481)
..+.-.-.+....-+.|..++|....++-.+-.++.+...+++..++..+..++.+
T Consensus 154 Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 154 YIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 22222222223334567888999999999999999999999999998888776655
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=1.1 Score=43.37 Aligned_cols=50 Identities=20% Similarity=0.115 Sum_probs=35.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHHHHHHH-hhcCChhHHHHHHHHHHHHHHH
Q psy7924 392 KGIAVSIACLFNWVSVLVVTKFFGDVTL-LLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 392 r~~~~g~~~~~~~~g~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
-+...|-.+....+|+++|+.+.+.++- ..|...+..+.+.+.++++++.
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~~~ 193 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAALVF 193 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 3567788888999999999999887654 5676666666665555555443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.29 E-value=2.8 Score=40.00 Aligned_cols=52 Identities=13% Similarity=0.164 Sum_probs=36.2
Q ss_pred CchhhHHHHHHHHH-HHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH
Q psy7924 25 TESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI 76 (481)
Q Consensus 25 ~~~~~~~~~s~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~ 76 (481)
+.+.+..+-....+ ...+...+..+++|+++|++++-+....+.....+.++
T Consensus 56 gae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~ 108 (491)
T PF03219_consen 56 GAEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAF 108 (491)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666665555 44556778899999999999988777666655555544
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.8 Score=42.32 Aligned_cols=165 Identities=14% Similarity=0.094 Sum_probs=96.7
Q ss_pred hhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhcCCCC----
Q psy7924 278 VVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALSTLTMGYYFYLKNSGS---- 351 (481)
Q Consensus 278 ~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 351 (481)
......++....+.+. .+........-......+++++++|.+ ||-+.+.++.++..++..++...........
T Consensus 57 ~~nlv~ylt~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~ 136 (571)
T KOG1237|consen 57 VSNLVTYLTLELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCK 136 (571)
T ss_pred hhHHHHHHHHHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccc
Confidence 3445555555655554 333444455555677778899999975 8888888888888888766655433331110
Q ss_pred -------Cccccc-hhHHHHHHHHHHH-HhhccCchhhhhhcccCcc----cchh--hHHHHHHHHHHHHHHHHHhHHHH
Q psy7924 352 -------DVSNIG-WLPLGSLCVFIIV-FSLGFGPIPWMLVGEIFPS----QIKG--IAVSIACLFNWVSVLVVTKFFGD 416 (481)
Q Consensus 352 -------~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~e~~p~----~~r~--~~~g~~~~~~~~g~~~~~~~~~~ 416 (481)
...... ...++...+.... ...+.-+....+-+|-++. +.+. .-....+...+.|..++..+..+
T Consensus 137 ~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vy 216 (571)
T KOG1237|consen 137 FKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVY 216 (571)
T ss_pred CCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHh
Confidence 000111 1111111222121 1222233334677777772 2223 55667777788888888888777
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHH
Q psy7924 417 VTLLLGGHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 417 ~~~~~g~~~~~~~~~~~~~~~~~~~~ 442 (481)
.-+..+|...|.+..+...+..++..
T Consensus 217 iq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 217 IQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred hhhcccceeeccHHHHHHHHHHHHHH
Confidence 77888998888877777666655443
|
|
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.5 Score=44.19 Aligned_cols=105 Identities=15% Similarity=0.063 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccC
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFG 376 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (481)
....+......+.+++.+.+.|+.+.|+.+.++........+.+... +.+...+...+.|++.+..+.
T Consensus 54 ~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~~------------N~y~~yfssallG~Gaallw~ 121 (461)
T KOG3098|consen 54 YGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLFP------------NSYYLYFSSALLGFGAALLWT 121 (461)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHhc------------chHHHHHHHHHhhhhHHheec
Confidence 35677778888999999999999999999999988888777666542 356677777888888887666
Q ss_pred chhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHH
Q psy7924 377 PIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFF 414 (481)
Q Consensus 377 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~ 414 (481)
... .+.+|...++.+.+..++...+...+.++|..+.
T Consensus 122 GqG-~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 122 GQG-GYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred ccc-eehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 555 7888999999999999999888888877776554
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.26 Score=41.73 Aligned_cols=159 Identities=18% Similarity=0.092 Sum_probs=72.1
Q ss_pred hhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy7924 281 YTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359 (481)
Q Consensus 281 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (481)
|.-++.+++|+.. +.+..........++...+.|-+.||.|||+..+.-.+...++++.= . ++....
T Consensus 59 YvYyLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK-------h-----SpqYkV 126 (454)
T KOG4332|consen 59 YVYYLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK-------H-----SPQYKV 126 (454)
T ss_pred eeeeeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh-------c-----CCceEE
Confidence 4444566677765 54443333333344555667889999999986543333333332211 1 112223
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcccC-----cccchhhHHHHHH-HHHHHHHHHHHhHHHHHHHhh--cCChhHHHHH
Q psy7924 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIF-----PSQIKGIAVSIAC-LFNWVSVLVVTKFFGDVTLLL--GGHGAFWIFS 431 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----p~~~r~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~--g~~~~~~~~~ 431 (481)
.++.-.+-+...+..+...-.-++.|.. |.+-.....+=.. ..+.+-.++.......+.|.. |.-.+|-..+
T Consensus 127 LmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa 206 (454)
T KOG4332|consen 127 LMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA 206 (454)
T ss_pred EeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 3444444444433333333334556664 2222222222222 122233444444444555554 4445565444
Q ss_pred HHHHHHHHHHHHhccCCCCC
Q psy7924 432 VIAALGAVFTYILVPETKGK 451 (481)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~~ 451 (481)
.+..++..+..--..|..++
T Consensus 207 cfLaigmAvil~~W~ENygd 226 (454)
T KOG4332|consen 207 CFLAIGMAVILSSWSENYGD 226 (454)
T ss_pred HHHHHHHHHHHhhhhhccCC
Confidence 44444444433333444444
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=94.05 E-value=1.3 Score=39.88 Aligned_cols=80 Identities=18% Similarity=0.228 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHH-----HhCChHHHH-HHH
Q psy7924 258 RGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVD-----RLGRRILLL-VSA 330 (481)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d-----~~grr~~~~-~~~ 330 (481)
+.+....++...+... +.... ..|.+++..+.+. +.+....... -.---+++..+.| |+||||..+ -+.
T Consensus 31 ~~illLl~LYllQGiP-~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~--P~sLKllWaPiVDs~y~k~~GrrksWvvp~q 106 (510)
T KOG3574|consen 31 SSILLLLFLYLLQGIP-LGLIG-AIPLLLQAKGVSYTSQAIFSFAYW--PFSLKLLWAPIVDSVYSKRFGRRKSWVVPCQ 106 (510)
T ss_pred hhHHHHHHHHHHcCCc-hhHhh-hhHHHhcCCCcchhhhhhhhhhhh--HHHHHHHHHhhhHHHHHHhhccccceeeehH
Confidence 4444445454444333 33333 7888888766664 3332222111 1122346666777 999987543 333
Q ss_pred HHHHHHHHHHH
Q psy7924 331 VIMALSTLTMG 341 (481)
Q Consensus 331 ~~~~~~~~~~~ 341 (481)
.+....+..+.
T Consensus 107 ~llG~~mllLs 117 (510)
T KOG3574|consen 107 YLLGLFMLLLS 117 (510)
T ss_pred HHHHHHHHHHh
Confidence 34444444443
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=93.27 E-value=1.9 Score=40.61 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q psy7924 302 VGTIMMVTTWIATMIVDRLGRRILLLVSAV 331 (481)
Q Consensus 302 ~~~~~~~~~~~~g~l~d~~grr~~~~~~~~ 331 (481)
..+..++..+....+..|+..|.-+..+.+
T Consensus 54 ~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 54 SQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 334444445555556666654333333433
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.43 E-value=13 Score=35.14 Aligned_cols=53 Identities=15% Similarity=0.106 Sum_probs=42.4
Q ss_pred CchhhHHHHHHHHH-HHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHH
Q psy7924 25 TESDLSFIGSSMAL-GAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIG 77 (481)
Q Consensus 25 ~~~~~~~~~s~~~~-~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~ 77 (481)
++..+.++-+...+ +..+..++..++++++.|++++-.....+....+++++.
T Consensus 59 gae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~V 112 (509)
T COG3202 59 GAESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFV 112 (509)
T ss_pred cchhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567888888888 778888999999999999999888777777766666653
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=90.62 E-value=3.4 Score=38.95 Aligned_cols=62 Identities=11% Similarity=0.221 Sum_probs=28.7
Q ss_pred hhHHHhhh--cCCCC-chhH---HHHHHHHHHHHHHHHHHHHHHHhCChHHHHH-HHHHHHHHHHHHHH
Q psy7924 281 YTVKIFKD--AGSSL-NPNL---CTIIVGTIMMVTTWIATMIVDRLGRRILLLV-SAVIMALSTLTMGY 342 (481)
Q Consensus 281 ~~~~~~~~--~g~~~-~~~~---~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~-~~~~~~~~~~~~~~ 342 (481)
-.|.++++ .+.+. +.+. ...++++=..=+.++=...++|+||||..++ .-.+.++.++.+..
T Consensus 22 siPflL~~~~~~~sy~q~~~fSla~~PfSlKlLWaPiVDs~y~~~~GRRKSWiiP~Q~l~g~~m~~l~~ 90 (544)
T PF13000_consen 22 SIPFLLQSMAKKVSYSQQAIFSLASYPFSLKLLWAPIVDSVYSKRIGRRKSWIIPIQYLSGILMLYLSY 90 (544)
T ss_pred cchhhhccccCCCChhHheeeeeeechhHHHHhhhhhhhhhcccccCCcchhhhHHHHHHHHHHHHHHh
Confidence 45666666 34443 2222 2223333222233333445568899885543 33444444444433
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=84.55 E-value=1.4 Score=38.43 Aligned_cols=62 Identities=8% Similarity=-0.032 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhc
Q psy7924 29 LSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVD 96 (481)
Q Consensus 29 ~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~ 96 (481)
.|.+.-.-.+...+..+....+.||+---.=..+..++.+.+..+.+++++.+ +- +.|-.+.
T Consensus 64 tg~VLLaDilPsL~iKl~~Pff~~rfpf~~Ri~~~v~~sa~s~~lVafs~s~~--~s----L~GV~~a 125 (409)
T KOG3880|consen 64 TGAVLLADILPSLAIKLTAPFFIHRFPFGFRIALVVLLSALSFFLVAFSNSVP--MS----LLGVVFA 125 (409)
T ss_pred cchhhhhhhhHHHHHHHhchhhhhhcccchHHHHHHHHHhcceEEEEeccchh--HH----Hhhhhhh
Confidence 44455555666666777777778875433333444567777888888898888 76 4444444
|
|
| >PF11947 DUF3464: Protein of unknown function (DUF3464); InterPro: IPR021855 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=80.85 E-value=7.6 Score=30.02 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=46.4
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhh
Q psy7924 315 MIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGI 394 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~ 394 (481)
.++||+-||..+. +.+..++++..+..+++....... ....+..+ +.-..+|+.+...+.|-.++...+++..|+
T Consensus 56 ~Vs~RM~rRm~~~-~GiP~~lG~~~f~~~y~l~~~~~~-dvP~~~~~---~~S~~~Fg~gllGisYGilSaSWD~~r~GS 130 (153)
T PF11947_consen 56 VVSNRMLRRMAVF-VGIPTALGVAVFVVFYYLKSRQIV-DVPPWAVL---LVSLVFFGLGLLGISYGILSASWDPEREGS 130 (153)
T ss_pred HHHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHhcccc-ccCchHHH---HHHHHHHHHHHHhhhhhhcccccCCCCCCC
Confidence 4678877765444 444444444444443333322210 11222222 222223333444455666667777787899
Q ss_pred HHHHHHHHHHHHHH
Q psy7924 395 AVSIACLFNWVSVL 408 (481)
Q Consensus 395 ~~g~~~~~~~~g~~ 408 (481)
..|+-.+-.|++-.
T Consensus 131 llG~~e~~~N~~r~ 144 (153)
T PF11947_consen 131 LLGWEEFKRNWGRM 144 (153)
T ss_pred cccHHHHHHhHHHH
Confidence 99998887777654
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 137 to 196 amino acids in length. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 481 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 1e-27 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 481 | |||
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 3e-05 |
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 Length = 451 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 25/143 (17%), Positives = 47/143 (32%), Gaps = 10/143 (6%)
Query: 306 MMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLC 365
+ T + + D++ R M L T+ Y+ V I C
Sbjct: 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMI--------C 352
Query: 366 VFIIVFSL-GFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTK-FFGDVTLLLGG 423
+ +I F + G + + E+ P + G A LF ++ V G G
Sbjct: 353 MIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412
Query: 424 HGAFWIFSVIAALGAVFTYILVP 446
G F + + L + +++
Sbjct: 413 DGGFMVMIGGSILAVILLIVVMI 435
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.98 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.95 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.9 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.66 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.58 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.53 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.47 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.47 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.24 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.88 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=351.91 Aligned_cols=422 Identities=26% Similarity=0.392 Sum_probs=317.3
Q ss_pred ccccccccccccccccCCCCc--------ccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHH
Q psy7924 2 GTILGWTSPAGDRLIAGEYPF--------LVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDL 73 (481)
Q Consensus 2 g~~~g~~~~~~~~~~~~~~~~--------~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~ 73 (481)
|++.+..++.+|.+.+ ++ +.++++.|++.+++.+|..+|++++|+++||+|||+++.++.+++.+++++
T Consensus 25 Gyd~~~i~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~ 101 (491)
T 4gc0_A 25 GYDTAVISGTVESLNT---VFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVG 101 (491)
T ss_dssp HHHHHGGGGTHHHHHH---HHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH---HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 4555666777777766 44 334567899999999999999999999999999999999999999999999
Q ss_pred HH------------------HHHHhHHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHH
Q psy7924 74 SF------------------IGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWV 128 (481)
Q Consensus 74 ~~------------------~~~~~~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~ 128 (481)
++ +++|++ ++ +++|+++ |++.|...+..+. +++|++..+..+.+.
T Consensus 102 ~a~~~~~~~~~~~~~~~~~~~a~~~~--~l----~~~R~l~--G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~-- 171 (491)
T 4gc0_A 102 SAWPELGFTSINPDNTVPVYLAGYVP--EF----VIYRIIG--GIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAI-- 171 (491)
T ss_dssp HHCTTTTTSCSSSSSSCCGGGGGCHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHH--
T ss_pred HHHHhhhhhhhcchhHHHHHHhhhHH--HH----HHHHHHH--HHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhh--
Confidence 98 477888 99 9999999 9999888777766 788999999999998
Q ss_pred HHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccCCChhHHhhcCc
Q psy7924 129 LISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFHLKKNR 208 (481)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~esp~~l~~~~~ 208 (481)
..|.+.+...+....... .........||..+.+..++.++..+..+++||||+|+..+++
T Consensus 172 ------------------~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~ 232 (491)
T 4gc0_A 172 ------------------IFGQLLVYCVNYFIARSG-DASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGK 232 (491)
T ss_dssp ------------------HHHHHHHHHHHHHHHTTS-CTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTC
T ss_pred ------------------hhhhhhhhhcchhhcccc-ccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCc
Confidence 888888777763221100 0111234679999999999999888888899999999999999
Q ss_pred HHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh
Q psy7924 209 VKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD 288 (481)
Q Consensus 209 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (481)
.|++.+.+++..+++...++..+.. +..+++++ .......++ .++...........++.+.+...+|.+.+.+.
T Consensus 233 ~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (491)
T 4gc0_A 233 QEQAEGILRKIMGNTLATQAVQEIK-HSLDHGRK-TGGRLLMFG----VGVIVIGVMLSIFQQFVGINVVLYYAPEVFKT 306 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-HTTHHHHSC----CTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHhHHHhcCCchhHHHHHHHH-HHHHhhhh-hhhHHHHhc----ccHHHHHHHHHHHHHHhhhhHHHhcchHHHHh
Confidence 9999999888765432222111111 11111111 111122222 23455556666677777788888899999888
Q ss_pred cCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHH
Q psy7924 289 AGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVF 367 (481)
Q Consensus 289 ~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (481)
.+.+. +........++...++.++.+++.||+|||+.+..+.....++.+.++...... ...+..+....++
T Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~~~~~~~~~ 379 (491)
T 4gc0_A 307 LGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ-------APGIVALLSMLFY 379 (491)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT-------CCHHHHHHHHHHH
T ss_pred cCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc-------cchHHHHHHHHHH
Confidence 77765 445567777888999999999999999999999999888888877766543221 2223444455556
Q ss_pred HHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH------hhcCChhHHHHHHHHHHHHHHH
Q psy7924 368 IIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL------LLGGHGAFWIFSVIAALGAVFT 441 (481)
Q Consensus 368 ~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~------~~g~~~~~~~~~~~~~~~~~~~ 441 (481)
..+++.+..++.+.+.+|++|++.|+++.|+.+..+++++.+++.+.+.+.+ ..++...|+++++++++..++.
T Consensus 380 ~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~ 459 (491)
T 4gc0_A 380 VAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFM 459 (491)
T ss_dssp HHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Confidence 6667777888888999999999999999999999999999999988765533 3456678889999999999999
Q ss_pred HHhccCCCCCCHHHHHHHhcCCCCCcc
Q psy7924 442 YILVPETKGKTLDEIQMELGGNGESNE 468 (481)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (481)
++++||||+|++||.|+..+++.++++
T Consensus 460 ~~~~PETkg~tLeei~~~f~~~~~~~~ 486 (491)
T 4gc0_A 460 WKFVPETKGKTLEELEALWEPETKKTQ 486 (491)
T ss_dssp HHHCCCCTTCCHHHHGGGTC-------
T ss_pred HheecCCCCCCHHHHHHHhCCCCcccc
Confidence 999999999999999888776554333
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-34 Score=269.56 Aligned_cols=368 Identities=12% Similarity=0.033 Sum_probs=258.5
Q ss_pred ccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHH----HHHhH
Q psy7924 6 GWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFI----GSSMA 81 (481)
Q Consensus 6 g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~----~~~~~ 81 (481)
+...+.+|.+.+ ++ .+..+.+++.+++.++..++++++|+++||+|||+++.++.++.+++.+++++ +++++
T Consensus 45 ~~~~~~~~~~~~---~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (451)
T 1pw4_A 45 KNFALAMPYLVE---QG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA 120 (451)
T ss_dssp TSHHHHHHHTTS---ST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSS
T ss_pred HHHHHHHHHHHH---Hh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHH
Confidence 445677888888 89 99999999999999999999999999999999999999999999999999999 99999
Q ss_pred HhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhh
Q psy7924 82 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPI 154 (481)
Q Consensus 82 ~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 154 (481)
.+ +++|++. |++.+...+.... +++|++..+....+. .+|..+++
T Consensus 121 --~l----~~~~~l~--G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~g~ 172 (451)
T 1pw4_A 121 --VM----FVLLFLC--GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH--------------------NVGGGIPP 172 (451)
T ss_dssp --HH----HHHHHHH--HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH--------------------HHHHTSHH
T ss_pred --HH----HHHHHHH--HHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHH--------------------HHHHHHHH
Confidence 99 9999999 9988876655544 588999999999888 88888887
Q ss_pred hhhhhhhhhhHhhccchhhH-HHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHH
Q psy7924 155 SISQSRRLAQVIKERKFEAS-VYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITD 232 (481)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~-w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 232 (481)
.++. ......+ ||+.|++.+++.++..+.. +++||+|+....+.+++. +.+.+. +
T Consensus 173 ~~~~---------~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~-~ 229 (451)
T 1pw4_A 173 LLFL---------LGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------KNDYPD-D 229 (451)
T ss_dssp HHHH---------HHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------CCC-----
T ss_pred HHHH---------HHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-------------cccccc-c
Confidence 7772 1114556 9999999998887765554 468998865322111110 000000 0
Q ss_pred HHHhhhhhccCccc--hHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHH
Q psy7924 233 MQNSLEKERSDKVP--LMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMV 308 (481)
Q Consensus 233 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~ 308 (481)
.+++ ++++....+ .++.++++..+. .....+.... .......+.|.+.++ .|.+. +.+.......++.++
T Consensus 230 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 230 YNEK-AEQELTAKQIFMQYVLPNKLLWY----IAIANVFVYL-LRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp ----------CCTHHHHHHTSSCHHHHH----HHHHHHHHHH-HHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHH
T ss_pred chhh-hhcccccccchHHHHHcCHHHHH----HHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 0000 011111111 345566543322 2222222222 234445566666655 78876 566788888899999
Q ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHH-HHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcc
Q psy7924 309 TTWIATMIVDRL--GRRILLLVSAVIMA-LSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGE 385 (481)
Q Consensus 309 ~~~~~g~l~d~~--grr~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 385 (481)
+.++.+++.||+ +||+.+..+..+.. ++.+.+... . ..+.+.......+.+.+.+.. .+....+..|
T Consensus 304 ~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~ 373 (451)
T 1pw4_A 304 GTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN----P-----AGNPTVDMICMIVIGFLIYGP-VMLIGLHALE 373 (451)
T ss_dssp HHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----C-----TTCHHHHHHHHHHHHHHHTHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----c-----ccCHHHHHHHHHHHHHHHhch-HHHHHHHHHH
Confidence 999999999999 99998877766665 444443321 0 112233333344444433332 3334578889
Q ss_pred cCcccchhhHHHHHHHHHHH-HHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 386 IFPSQIKGIAVSIACLFNWV-SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 386 ~~p~~~r~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
.+|++.|+++.|+.+...++ +..++|.+.+.+.+..|++..+.+.+++.++..++..+.
T Consensus 374 ~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 374 LAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp TSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 999999999999999999888888887777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.3e-31 Score=252.15 Aligned_cols=349 Identities=14% Similarity=0.064 Sum_probs=247.7
Q ss_pred ccccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHH---HHHHHh
Q psy7924 4 ILGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLS---FIGSSM 80 (481)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~---~~~~~~ 80 (481)
..+...+.+|.+.+ ++|+++.+.+++.+++.++..+++++.|+++||+|||+++.++.++.+++.+++ .+++++
T Consensus 41 ~~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~ 117 (438)
T 3o7q_A 41 ANNLNDILLPQFQQ---AFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNY 117 (438)
T ss_dssp HHHHHHHHHHHHHH---HSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHhHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccH
Confidence 34556778889988 999999999999999999999999999999999999999999999999999999 788899
Q ss_pred HHhHhhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhh
Q psy7924 81 ALGAVFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCP 153 (481)
Q Consensus 81 ~~~~l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 153 (481)
+ .+ +++|++. |++.+...+.... +++|++..+..+.+. .+|..++
T Consensus 118 ~--~l----~~~~~l~--G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~g 169 (438)
T 3o7q_A 118 T--LF----LVGLFII--AAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN--------------------SFGAIIA 169 (438)
T ss_dssp H--HH----HHHHHHH--HHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH--------------------HHHHHHH
T ss_pred H--HH----HHHHHHH--HhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH--------------------HHHHHHH
Confidence 9 99 9999999 9998877765554 688899999999988 8888888
Q ss_pred hhhhhhhhhhhHhhc------------------cchhhHHHHHHHHhhHHHHHHHHHHhc--cCCChhHHhhcCcHHHHH
Q psy7924 154 ISISQSRRLAQVIKE------------------RKFEASVYGLSIICALLPIFFVGLMLL--MPESPQFHLKKNRVKQAK 213 (481)
Q Consensus 154 ~~~~~~~~~~~~~~~------------------~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~esp~~l~~~~~~~~a~ 213 (481)
+.++...... ..+. .....+||+.|++.+.+.++..+..++ .||+++.. ++
T Consensus 170 ~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~----- 240 (438)
T 3o7q_A 170 VVFGQSLILS-NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---HS----- 240 (438)
T ss_dssp HHHTTHHHHT-SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---CC-----
T ss_pred HHHHHHHHhc-ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---cc-----
Confidence 8877322100 0000 001123999998877776665554443 56654210 00
Q ss_pred HHHHHHhCCCccchHHHHHHHHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHH-hhh-cCC
Q psy7924 214 ESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKI-FKD-AGS 291 (481)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~ 291 (481)
.+++++.+.+.++.+++|..+...+..+ ..... ......+.|.+ .++ .|.
T Consensus 241 -----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~g~ 292 (438)
T 3o7q_A 241 -----------------------DAKQGSFSASLSRLARIRHWRWAVLAQF----CYVGA-QTACWSYLIRYAVEEIPGM 292 (438)
T ss_dssp -----------------------CSSTTSHHHHHHHHTTCSHHHHHHHHHH----HHHHH-HHHHHHHHHHHHHHHSTTC
T ss_pred -----------------------cccccchhhhHHHHHhChHHHHHHHHHH----HHHHH-HHHHHHHHHHHhhhccCCc
Confidence 0011112235567777764443322222 22111 23333444544 554 488
Q ss_pred CC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHH
Q psy7924 292 SL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIV 370 (481)
Q Consensus 292 ~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (481)
+. +.+.......++..++.++.++++||+|||+.+..+.++..++.+..... +..+ ......+.+++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~g~~ 360 (438)
T 3o7q_A 293 TAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-----------GGHV-GLIALTLCSAF 360 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----------CHHH-HHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-----------CCcH-HHHHHHHHHHH
Confidence 76 56777888889999999999999999999999998888887776665442 2222 23333444444
Q ss_pred HhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc-CChhHHHHHHHHH
Q psy7924 371 FSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG-GHGAFWIFSVIAA 435 (481)
Q Consensus 371 ~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~ 435 (481)
.+... +..+.+..|.+|++ ++++.++.. .+.+++.++|.+.|.+.+..| ++..+.+.+++.+
T Consensus 361 ~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~ 423 (438)
T 3o7q_A 361 MSIQY-PTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFA 423 (438)
T ss_dssp HTTHH-HHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 44333 45567778999977 888888877 677999999999999999999 8888876544433
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=231.96 Aligned_cols=383 Identities=11% Similarity=-0.047 Sum_probs=232.3
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhcc-ccchhhhhhhhhhHHHHhHHHHHHHHhHHhHhhhhhHHHHhhcccc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDT-VGRKNTMLLLAVPTVTESDLSFIGSSMALGAVFGSPVVGNLVDTVG 99 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~r~~~~~G 99 (481)
|+|.+..+.+++.+.+.++..+++++.|+++|| +|||+++..+.++..++.++++++++++ .+ +++|++. |
T Consensus 48 ~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~l~--g 119 (491)
T 4aps_A 48 DLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGAS--AL----FGSIILI--I 119 (491)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTT--HH----HHHHHHH--H
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHH--HH----HHHHHHH--H
Confidence 599999999999999999999999999999999 8999999999999999999999999999 99 9999999 9
Q ss_pred ccceeeeeeccc-------ccc--ccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhccc
Q psy7924 100 RKNTMLLLAVPS-------FDI--RPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKERK 170 (481)
Q Consensus 100 ~~~~~~~~~~~~-------~~~--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 170 (481)
++.+...+.... +++ |+...+..+.+. .+|..+++.++ +...
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--------------------~~g~~~~~~~~---------~~l~ 170 (491)
T 4aps_A 120 IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGI--------------------NLGAFIAPLIV---------GAAQ 170 (491)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHH--------------------HHHHHHHHHHH---------HHHH
T ss_pred HHHHhccchHHHHHHHHcCcccccceeeehHHHHHH--------------------HHHHHHHHHHH---------HHHH
Confidence 998877665554 445 666777677777 78888777776 2222
Q ss_pred hhhHHHHHHHHhhHHHHHHHHHHhcc-CC----ChhHHhhcCcHHHHHHHHHH---------------HhCCCccchHHH
Q psy7924 171 FEASVYGLSIICALLPIFFVGLMLLM-PE----SPQFHLKKNRVKQAKESLQW---------------FRGSEYDIDSEI 230 (481)
Q Consensus 171 ~~~~w~~~~~~~~~~~~~~~~~~~~~-~e----sp~~l~~~~~~~~a~~~~~~---------------~~~~~~~~~~~~ 230 (481)
...+||+.|++.++..++..+...+. |+ ..+....+.+.++.++..++ ...+..+.++..
T Consensus 171 ~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~ 250 (491)
T 4aps_A 171 EAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYI 250 (491)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccch
Confidence 55789999999877766555544322 11 11000111122333332222 000111111100
Q ss_pred HHHH---------HhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHh-hhcCCCC-chhHHH
Q psy7924 231 TDMQ---------NSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIF-KDAGSSL-NPNLCT 299 (481)
Q Consensus 231 ~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~-~~~~~~ 299 (481)
.... ......+..+.+ +..+++ ................ .+.....+.+.+. +..+.+. ..+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (491)
T 4aps_A 251 NLLTIVAIAIPVFYFAWMISSVKVT--STEHLR--VVSYIPLFIAAVLFWA-IEEQGSVVLATFAAERVDSSWFPVSWFQ 325 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHC----------------CTTHHHHHHHHHHHHH-HHGGGGTHHHHHHHHSCCCSSSCSGGGT
T ss_pred hhhhHHHHHHHHHHHHHHhhccccc--HHHHHH--HHHHHHHHHHHHHHHH-HHhhccHHHHHHHHHHhccCccCHHHHh
Confidence 0000 000000000000 011111 1111111111111111 1222333334333 3355553 556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChHHHH-----HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhc
Q psy7924 300 IIVGTIMMVTTWIATMIVDRLGRRILLL-----VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLG 374 (481)
Q Consensus 300 ~~~~~~~~~~~~~~g~l~d~~grr~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (481)
....+...++.++.+++.||++||+... .+..+.+++.+.+........... ..+.+.......+.+.+.+..
T Consensus 326 ~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~g~~~~~~ 403 (491)
T 4aps_A 326 SLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGTSG--KVSPLWLVGSWALVILGEMLI 403 (491)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCCCT--TCCTHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCC--CccHHHHHHHHHHHHHHHHHH
Confidence 7778888888999999999999986544 556666665555544322211110 123334444444454444433
Q ss_pred cCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 375 FGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 375 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
.+..+.++.|.+|++.|+++.|+.+...++|..+++.+.+.+.+ .++...+.+.++++++..++.++..++.+
T Consensus 404 -~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 404 -SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNA-KSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp -TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGG-SSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred -hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556899999999999999999999999999999999886654 46777888888777777776666555443
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-29 Score=233.52 Aligned_cols=335 Identities=14% Similarity=0.057 Sum_probs=235.3
Q ss_pred cccccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHhH
Q psy7924 5 LGWTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALGA 84 (481)
Q Consensus 5 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (481)
.+...|.+|.+.+ ++|.++++.+++.+.+.++..+++++.|+++||+|||+++..+..+..++.++..++++++ .
T Consensus 16 ~~~~~~~~~~~~~---~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--~ 90 (375)
T 2gfp_A 16 QTIYIPAIADMAR---DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLT--V 90 (375)
T ss_dssp HHHHHHHHHHHHT---TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHH--H
T ss_pred HHHHhhhhHHHHH---HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHH--H
Confidence 3445677888888 9999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred hhhhhHHHHhhccccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhh
Q psy7924 85 VFGSPVVGNLVDTVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISIS 157 (481)
Q Consensus 85 l~g~~~~~r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~ 157 (481)
+ ++.|++. |++.+...+.... +++|++..+..+.+. .+|..+++.++
T Consensus 91 l----~~~~~l~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~g~~~~~~~~ 144 (375)
T 2gfp_A 91 L----IAASAMQ--GMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGI--------------------LVSPLLAPLIG 144 (375)
T ss_dssp H----HHHHHHH--HHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHH--------------------HHHHHHHHHHH
T ss_pred H----HHHHHHH--HHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHH--------------------HHHHHhhHHHH
Confidence 9 9999999 9988876655544 688999999999988 88888888877
Q ss_pred hhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHH-hccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHh
Q psy7924 158 QSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLM-LLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNS 236 (481)
Q Consensus 158 ~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~-~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 236 (481)
+...+..+||+.+++.++..++..+.. +++||+|+..
T Consensus 145 ---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------- 182 (375)
T 2gfp_A 145 ---------GLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD--------------------------------- 182 (375)
T ss_dssp ---------HHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---------------------------------
T ss_pred ---------HHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---------------------------------
Confidence 333356789999999888887776634 4578876320
Q ss_pred hhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCCCC-chhHHHHHHHHHHHHHHHHHH
Q psy7924 237 LEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGSSL-NPNLCTIIVGTIMMVTTWIAT 314 (481)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~-~~~~~~~~~~~~~~~~~~~~g 314 (481)
+++++.+.+.++.+|+|..+...+... .... .......+.|.+.++ .|.+. +.+.......++.+++.++.+
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~ 256 (375)
T 2gfp_A 183 -APRTRLLTSYKTLFGNSGFNCYLLMLI----GGLA-GIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAG 256 (375)
T ss_dssp -CCCCCTTTCSTHHHHHHHHHHHHHHHH----HHHH-HHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred -cccccHHHHHHHHhcCcchHHHHHHHH----HHHH-HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001112334556666654333222221 1111 223334444544444 66665 456677777788888999999
Q ss_pred HHHHHhCChHHHHHHHHH-HHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchh
Q psy7924 315 MIVDRLGRRILLLVSAVI-MALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKG 393 (481)
Q Consensus 315 ~l~d~~grr~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~ 393 (481)
++.||.+++ ...+... ...+......... . ..+.+.......+.+.+.+.... ....+..|.+| ++|+
T Consensus 257 ~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~p-~~~g 325 (375)
T 2gfp_A 257 RPNKRFSTL--MWQSVICCLLAGLLMWIPDWF-G------VMNVWTLLVPAALFFFGAGMLFP-LATSGAMEPFP-FLAG 325 (375)
T ss_dssp TTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH-H------HHHHHHHHHHHHHHHHHHHHTSS-TTHHHHHTHHH-HHHH
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh-c------cccHHHHHHHHHHHHHHHHHhhH-HHHHHHHHhCC-cccc
Confidence 999988772 2222222 2222111111100 0 11223334445555555555444 44588889998 8999
Q ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHH
Q psy7924 394 IAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWI 429 (481)
Q Consensus 394 ~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~ 429 (481)
++.|+.+...++|..++|.+.+.+.+..++...+.+
T Consensus 326 ~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~ 361 (375)
T 2gfp_A 326 TAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM 361 (375)
T ss_dssp HHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 999999999999999999999998887666544443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-28 Score=227.44 Aligned_cols=361 Identities=13% Similarity=0.134 Sum_probs=206.9
Q ss_pred cccccccccccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHH---HHHHHHhHHh
Q psy7924 7 WTSPAGDRLIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDL---SFIGSSMALG 83 (481)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~~ 83 (481)
...|.+|...++ ++|.+..+.|++.+.+.++..++++++|+++||+|||++++++..++.++... ..+++... .
T Consensus 25 ~~~~~~~~~l~~--~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 101 (417)
T 2cfq_A 25 AYFPFFPIWLHD--INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQ-Y 101 (417)
T ss_dssp HHTTTHHHHHHT--TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHH-T
T ss_pred HHHHHHHHHHHH--HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 335667764431 68999999999999999999999999999999999999999888776553221 12222211 0
Q ss_pred HhhhhhHHHHhhccccccceeeeeecc----c-----cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVP----S-----FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPI 154 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~----~-----~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 154 (481)
.+ +.++++. |...+....... . .++++...+....+. .+|..+++
T Consensus 102 ~~----~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~--------------------~~g~~~~~ 155 (417)
T 2cfq_A 102 NI----LVGSIVG--GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG--------------------CVGWALGA 155 (417)
T ss_dssp TC----CHHHHGG--GSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSST--------------------TTHHHHHH
T ss_pred HH----HHHHHHH--HHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHH--------------------HHHHHHHH
Confidence 23 4455555 443332211111 1 122333333332233 56666666
Q ss_pred hhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHHHHHHHhccC-CChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHH
Q psy7924 155 SISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMP-ESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM 233 (481)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~-esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (481)
.++.. . ...+||+.|++.++..++..+..++.| |+|+. .+.++ + +
T Consensus 156 ~l~~~---------l-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-----------~-~-------- 201 (417)
T 2cfq_A 156 SIVGI---------M-FTINNQFVFWLGSGCALILAVLLFFAKTDAPSS----ATVAN-----------A-V-------- 201 (417)
T ss_dssp HHHHH---------H-HHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS----SCSSS-----------S-S--------
T ss_pred HHHHH---------H-HHhchhHHHHHHHHHHHHHHHHHHHcCcccccc----ccccc-----------c-c--------
Confidence 55511 1 124689999888777655554444444 43310 00000 0 0
Q ss_pred HHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhh-cCC---CC-chhHHHHHHHHHHHH
Q psy7924 234 QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKD-AGS---SL-NPNLCTIIVGTIMMV 308 (481)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~---~~-~~~~~~~~~~~~~~~ 308 (481)
+.++++....+.++.++++..+...+..+.... .+.....+.|.+..+ .+. +. ..+.......+..++
T Consensus 202 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 274 (417)
T 2cfq_A 202 --GANHSAFSLKLALELFRQPKLWFLSLYVIGVSC-----TYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNAS 274 (417)
T ss_dssp --SSCCCCCCHHHHHHHTTCHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHH
T ss_pred --ccccccccHHHHHHHhcCCchhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHH
Confidence 000001111234567777654432222111111 112222223333332 221 11 123445556677788
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc
Q psy7924 309 TTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388 (481)
Q Consensus 309 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 388 (481)
+.++.++++||+|||+.+..+..+.+++.+.+.. .++.+...+...+.+.+..... +..+.+.+|.+|
T Consensus 275 ~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~p 342 (417)
T 2cfq_A 275 IMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----------ATSALEVVILKTLHMFEVPFLL-VGCFKYITSQFE 342 (417)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT-----------CCSHHHHHHHTTHHHHHHHHHH-HHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH-----------hccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCC
Confidence 9999999999999999988877777666544432 1122222222222232222212 233578899999
Q ss_pred ccchhhHHHHH-HHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCC
Q psy7924 389 SQIKGIAVSIA-CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETK 449 (481)
Q Consensus 389 ~~~r~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (481)
++.|+++.++. +...++|+.++|.+.|.+.+..|+...|.+.++++++..++.+...||++
T Consensus 343 ~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99999999995 78888999999999999999888777787777777766665555555543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-24 Score=207.84 Aligned_cols=138 Identities=15% Similarity=0.051 Sum_probs=112.9
Q ss_pred Ccc------cCchhhHHHHHHHHHHHhhhhhhhhhhhccc-cchhhhhhhhhhHHHHhHHHHHHH-HhHHhHhhhhhHHH
Q psy7924 21 PFL------VTESDLSFIGSSMALGAVFGSPVVGNLVDTV-GRKNTMLLLAVPTVTESDLSFIGS-SMALGAVFGSPVVG 92 (481)
Q Consensus 21 ~~~------~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~ 92 (481)
++| .+..+.+++.+.+.++..++.++.|+++||+ |||+++.++.++..++.++.++++ +++ .+ +++
T Consensus 42 ~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~ 115 (524)
T 2xut_A 42 ALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQ--GF----YTG 115 (524)
T ss_dssp SCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHH--HH----HHH
T ss_pred HhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHH--HH----HHH
Confidence 677 9999999999999999999999999999999 999999999999999999999998 888 88 999
Q ss_pred Hhhccccccceeeeeeccc-------cccccchhhh---hhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhh
Q psy7924 93 NLVDTVGRKNTMLLLAVPS-------FDIRPLLGET---SQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRL 162 (481)
Q Consensus 93 r~~~~~G~~~~~~~~~~~~-------~~~r~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~ 162 (481)
|++. |++.+...+.... +++|+...+. ...+. .+|..+++.+..
T Consensus 116 ~~l~--g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~--------------------~~g~~~g~~~~~---- 169 (524)
T 2xut_A 116 LFLI--ALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTI--------------------NFGSFFASLSMP---- 169 (524)
T ss_dssp HHHH--HHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHH--------------------HHHHHHHHHTST----
T ss_pred HHHH--HHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHH--------------------HHHHHHHHHHHH----
Confidence 9999 9988876655544 5667665555 66666 777777777762
Q ss_pred hhHhhccchhhHHHHHHHHhhHHHHHHHHHHhc
Q psy7924 163 AQVIKERKFEASVYGLSIICALLPIFFVGLMLL 195 (481)
Q Consensus 163 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~ 195 (481)
......+||+.|++.++..++..+..++
T Consensus 170 -----~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 170 -----LLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp -----HHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred -----HHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 2224568999999988887666555443
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.3e-15 Score=143.50 Aligned_cols=178 Identities=14% Similarity=0.098 Sum_probs=136.8
Q ss_pred HHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Q psy7924 264 LGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY 342 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~ 342 (481)
.....+.............|.+.++. .+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.+...+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~ 111 (451)
T 1pw4_A 33 IFFGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF 111 (451)
T ss_dssp HHHHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence 33333333333445566677787777 776 6788888899999999999999999999999999999999988888766
Q ss_pred HHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhc
Q psy7924 343 YFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLG 422 (481)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g 422 (481)
.... .++.+..++...+.+++.+... +...+++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..|
T Consensus 112 ~~~~-------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g 183 (451)
T 1pw4_A 112 VPWA-------TSSIAVMFVLLFLCGWFQGMGW-PPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFN 183 (451)
T ss_dssp CHHH-------HSSSSHHHHHHHHHHHHHHHTH-HHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTC
T ss_pred hhhc-------cccHHHHHHHHHHHHHHhhhcc-chHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 2110 0123445555556666555444 4445888999999999999999999999999999999999889898
Q ss_pred -CChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 423 -GHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 423 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
|+..|++.+++.++..++..+..||+++
T Consensus 184 ~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 184 DWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp CSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred cHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9999999988888877777777777544
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=129.79 Aligned_cols=159 Identities=12% Similarity=-0.007 Sum_probs=123.1
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.|.+. +.+.......++..++.++.|+++||+|||+.+..+.++.+++.++......
T Consensus 42 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~-------- 113 (438)
T 3o7q_A 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_dssp HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc--------
Confidence 3555666788888899988 6688888999999999999999999999999999999999988887732111
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHH-Hhhc----------
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVT-LLLG---------- 422 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~-~~~g---------- 422 (481)
.++.+..++...+.+.+.+...... ..++.|.+|+++|+++.++.+....+|..++|.+.+.+. +..+
T Consensus 114 ~~~~~~l~~~~~l~G~~~~~~~~~~-~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~ 192 (438)
T 3o7q_A 114 IMNYTLFLVGLFIIAAGLGCLETAA-NPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKM 192 (438)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHS
T ss_pred cccHHHHHHHHHHHHhhHHHhhhhH-HHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccC
Confidence 2344555566666666655544444 588999999999999999999999999999999999888 4443
Q ss_pred ---------------CChhHHHHHHHHHHHHHHHH
Q psy7924 423 ---------------GHGAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 423 ---------------~~~~~~~~~~~~~~~~~~~~ 442 (481)
|++.|.+.+.+..+..++..
T Consensus 193 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~ 227 (438)
T 3o7q_A 193 SPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIM 227 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 67777766666655555443
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.53 E-value=5.1e-14 Score=134.11 Aligned_cols=169 Identities=15% Similarity=0.167 Sum_probs=126.1
Q ss_pred HHHHHHHHhhhhhhhhHhhHHHhhh-----cCCCC-chhHHHHHHHHHHHHHHHHHHHHHHH-hCChHHHHHHHHHHHHH
Q psy7924 264 LGVMFIQQFGGINAVVFYTVKIFKD-----AGSSL-NPNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALS 336 (481)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~-~grr~~~~~~~~~~~~~ 336 (481)
....+...+..+.......+++.+. .|.+. +.+.......++..++.++.|+++|| +|||+.+..+.++..++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~ 98 (491)
T 4aps_A 19 FMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLG 98 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 3333333333334444555555555 78877 66778888999999999999999999 89999999999998888
Q ss_pred HHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccc--hhhHHHHHHHHHHHHHHHHHhHH
Q psy7924 337 TLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQI--KGIAVSIACLFNWVSVLVVTKFF 414 (481)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~--r~~~~g~~~~~~~~g~~~~~~~~ 414 (481)
.+.... .++.+...+...+.+.+.+... +...++++|.+|+++ |+.+.++.+...++|..++|.+.
T Consensus 99 ~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~ 166 (491)
T 4aps_A 99 HIVLAL-----------PFGASALFGSIILIIIGTGFLK-PNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV 166 (491)
T ss_dssp HHHHHS-----------CCSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----------hhhHHHHHHHHHHHHHHHHhcc-chHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH
Confidence 877755 3344555555666666555444 444588899999988 77788888999999999999999
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHh
Q psy7924 415 GDVTLLLGGHGAFWIFSVIAALGAVFTYIL 444 (481)
Q Consensus 415 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 444 (481)
+.+.+..||++.|.+.++..++..++..+.
T Consensus 167 ~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 167 GAAQEAAGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999988776666655554433
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=7.2e-14 Score=128.07 Aligned_cols=164 Identities=16% Similarity=0.067 Sum_probs=127.0
Q ss_pred hhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCc
Q psy7924 275 INAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 353 (481)
Q Consensus 275 ~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (481)
........|.+.++.|.+. +.+.......+...++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 16 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 85 (375)
T 2gfp_A 16 QTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT---------- 85 (375)
T ss_dssp HHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH----------
T ss_pred HHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh----------
Confidence 3444455677778888887 56778888899999999999999999999999999999888888877663
Q ss_pred cccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 354 SNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
++.+.......+.+.+.+... +....++.|.+|+++|+++.++.+....+|..++|.+.+.+.+..+|+..+.+.++.
T Consensus 86 -~~~~~l~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~ 163 (375)
T 2gfp_A 86 -SSLTVLIAASAMQGMGTGVGG-VMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVL 163 (375)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred -ccHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHH
Confidence 233444444555555544333 444588899999999999999999999999999999999888888999888877777
Q ss_pred HHHHHHHHHHhccCCCC
Q psy7924 434 AALGAVFTYILVPETKG 450 (481)
Q Consensus 434 ~~~~~~~~~~~~~~~~~ 450 (481)
..+..+...+..||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 164 CAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHCcccCC
Confidence 76665544455666543
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-12 Score=125.97 Aligned_cols=156 Identities=13% Similarity=0.025 Sum_probs=117.9
Q ss_pred hhhhHhhHHHhhhcC------CCC-chhHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHHHHHHhhc
Q psy7924 276 NAVVFYTVKIFKDAG------SSL-NPNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALSTLTMGYYFYLK 347 (481)
Q Consensus 276 ~~~~~~~~~~~~~~g------~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~-grr~~~~~~~~~~~~~~~~~~~~~~~~ 347 (481)
.......+++.++.| .+. +.+.......++..++.++.|+++||+ |||+.+..+.++..++.++....
T Consensus 30 ~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~---- 105 (524)
T 2xut_A 30 GMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF---- 105 (524)
T ss_dssp HHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh----
Confidence 344445555666677 776 667888888999999999999999999 99999999998888888777652
Q ss_pred CCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHH---HHHHHHHHHHHHHhHHHHHHHhhcCC
Q psy7924 348 NSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSI---ACLFNWVSVLVVTKFFGDVTLLLGGH 424 (481)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~---~~~~~~~g~~~~~~~~~~~~~~~g~~ 424 (481)
..+.+...+...+.+.+.+... +...+++.|.+|+++|++..+. .+...++|..++|.+.+.+.+..||+
T Consensus 106 ------~~~~~~~~~~~~l~g~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~ 178 (524)
T 2xut_A 106 ------EHSVQGFYTGLFLIALGSGGIK-PLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAA 178 (524)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHTTH-HHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHH
T ss_pred ------cccHHHHHHHHHHHHHhccccc-hhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHH
Confidence 1133444555555555544433 4445888999999999876666 88899999999999999999888999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q psy7924 425 GAFWIFSVIAALGAVFTY 442 (481)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~ 442 (481)
..|.+.+++.++..++..
T Consensus 179 ~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 179 VAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888877776665544443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-10 Score=110.62 Aligned_cols=122 Identities=17% Similarity=0.054 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCC-------CccccchhHHHHHHHHHH
Q psy7924 297 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS-------DVSNIGWLPLGSLCVFII 369 (481)
Q Consensus 297 ~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 369 (481)
+......++.++|+++.|+++||+|||+.+..+.++..++.++.++......... ....+.+..++.-.+.++
T Consensus 59 ~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~ 138 (491)
T 4gc0_A 59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGI 138 (491)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHH
Confidence 4555667888999999999999999999999999999998888764211000000 002233445555666666
Q ss_pred HHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy7924 370 VFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGDVTL 419 (481)
Q Consensus 370 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~ 419 (481)
+.+... +....+++|..|++.|+...++.+.....|...++.+......
T Consensus 139 g~G~~~-~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~ 187 (491)
T 4gc0_A 139 GVGLAS-MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIAR 187 (491)
T ss_dssp HHHHHH-HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHH-HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhcc
Confidence 555444 4445899999999999999999998888888877776655443
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-10 Score=107.80 Aligned_cols=144 Identities=14% Similarity=0.114 Sum_probs=83.2
Q ss_pred hhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy7924 281 YTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359 (481)
Q Consensus 281 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (481)
.+.++.++.|.+. +.+.......++..+++++.|+++||+|||+.+..+..+..+........... ......
T Consensus 30 ~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~-------~~~~~~ 102 (417)
T 2cfq_A 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFG-------PLLQYN 102 (417)
T ss_dssp HHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHH-------HHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Confidence 3344445578887 67888888899999999999999999999999988777654422111100000 000000
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcccCcc--cchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHH
Q psy7924 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIFPS--QIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVI 433 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~--~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 433 (481)
......+.+...+....... ....+..++ +.++...|..+....+|..++|.+.+.+.+ .+|+..|++.++.
T Consensus 103 ~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~f~~~~~~ 176 (417)
T 2cfq_A 103 ILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFVFWLGSGC 176 (417)
T ss_dssp CCHHHHGGGSSTTHHHHTTH-HHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHhhhH-HHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHHHHHHHHH
Confidence 01111111111111111111 222222222 355667777777788899999999888876 4787777655444
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 481 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 3e-12 | |
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 0.004 | |
| d1pv7a_ | 417 | f.38.1.2 (A:) Lactose permease {Escherichia coli [ | 2e-06 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 65.9 bits (159), Expect = 3e-12
Identities = 52/439 (11%), Positives = 121/439 (27%), Gaps = 52/439 (11%)
Query: 22 FLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMA 81
+ DL F S +++ F ++G++ D + + +
Sbjct: 54 QGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPA----------------GLI 97
Query: 82 LGAVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVWVLISTTNRRISDKC 141
L A + T +LL + + + +
Sbjct: 98 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGW-----FQGMGWPPCGRTMVHWWSQKERGG 152
Query: 142 FVGSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQ 201
V + A I L + + A++Y + L+ +F +M P+S
Sbjct: 153 IVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCG 212
Query: 202 FHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLL 261
+ + + ++ Q F LL
Sbjct: 213 LPPIEEYKNDYPDDYNE---------------------KAEQELTAKQIFMQYVLPNKLL 251
Query: 262 IGLGVMFIQQFGGINAVVFYTVKIFKDAG--SSLNPNLCTIIVGTIMMVTTWIATMIVDR 319
+ + + + ++ ++ K+ + + + + T + + D+
Sbjct: 252 WYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDK 311
Query: 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIP 379
+ R M L T+ Y+ V I + +G G +
Sbjct: 312 VFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIG-------FLIYGPVMLI 364
Query: 380 WMLVGEIFPSQIKGIAVSIACLFNWV-SVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGA 438
+ E+ P + G A LF ++ + + G G G F + + L
Sbjct: 365 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAV 424
Query: 439 VFTYILVPETKGKTLDEIQ 457
+ +++ K + +Q
Sbjct: 425 ILLIVVMIGEKRRHEQLLQ 443
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 37.4 bits (85), Expect = 0.004
Identities = 26/189 (13%), Positives = 61/189 (32%), Gaps = 9/189 (4%)
Query: 260 LLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDR 319
+ +G+ + + + + S + + + +I + DR
Sbjct: 26 IFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDR 85
Query: 320 LGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIP 379
R+ L ++ A L MG+ + +S + L F P
Sbjct: 86 SNPRVFLPAGLILAAAVMLFMGFVPWATSS--------IAVMFVLLFLCGWFQGMGWPPC 137
Query: 380 WMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFG-DVTLLLGGHGAFWIFSVIAALGA 438
+ + + +G VS+ + V + F + H A ++ + A L A
Sbjct: 138 GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVA 197
Query: 439 VFTYILVPE 447
+F + ++ +
Sbjct: 198 LFAFAMMRD 206
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} Length = 417 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Score = 47.5 bits (111), Expect = 2e-06
Identities = 51/435 (11%), Positives = 118/435 (27%), Gaps = 63/435 (14%)
Query: 24 VTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALG 83
+++SD I ++++L ++ P+ G L D +G + +L + + FI
Sbjct: 40 ISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-- 97
Query: 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPSFDIRPLLGETSQVTVWVLISTTNRRISDKCFV 143
LL + G I
Sbjct: 98 ----------------------LLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRR 135
Query: 144 GSDHLAILCPISISQSRRLAQVIKERKFEASVYGLSIICALLPIFFVGLMLLMPESPQFH 203
+ A ++ + + + I V L ++P
Sbjct: 136 SNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSA 195
Query: 204 LKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLMQAFSTPAAKRGLLIG 263
N V + ++ F P L
Sbjct: 196 TVANAVGANHSAFSLKL--------------------------ALELFRQPKLWFLSLYV 229
Query: 264 LGVMFIQQFGGINAVVFYTVKIFKDAGSSLNPNLCTIIVGTIMMVTTWIATMIVDRLGRR 323
+GV F+T + T + + + A +I++R+G +
Sbjct: 230 IGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGK 289
Query: 324 ILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLV 383
LL++ IM++ + + L + L + + +
Sbjct: 290 NALLLAGTIMSVRIIGSSFATS------------ALEVVILKTLHMFEVPFLLVGCFKYI 337
Query: 384 GEIFPSQIKGIAVSIA-CLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTY 442
F + + C F ++++ ++ G++ +G GA+ + ++A + +
Sbjct: 338 TSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISV 397
Query: 443 ILVPETKGKTLDEIQ 457
+ +L Q
Sbjct: 398 FTLSGPGPLSLLRRQ 412
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 481 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.98 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.96 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.65 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.14 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.98 E-value=3e-32 Score=255.09 Aligned_cols=366 Identities=11% Similarity=0.031 Sum_probs=235.8
Q ss_pred CcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHH----HhHHhHhhhhhHHHHhhc
Q psy7924 21 PFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGS----SMALGAVFGSPVVGNLVD 96 (481)
Q Consensus 21 ~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~r~~~ 96 (481)
|+|+|++|.|++.+++.+++.++++++|+++||+|||+++.++.++.+++.+++++++ +++ .+ ++.|++.
T Consensus 53 ~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~ 126 (447)
T d1pw4a_ 53 EQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIA--VM----FVLLFLC 126 (447)
T ss_dssp SSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSS--HH----HHHHHHH
T ss_pred HhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHH--HH----HHHHHHH
Confidence 6799999999999999999999999999999999999999999999999999988765 444 66 9999999
Q ss_pred cccccceeeeeeccc-------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhhhhhhhhhhhhHhhcc
Q psy7924 97 TVGRKNTMLLLAVPS-------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPISISQSRRLAQVIKER 169 (481)
Q Consensus 97 ~~G~~~~~~~~~~~~-------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~ 169 (481)
|++.+...+.... +++|++..++.+.+. .+|..+++.+.... .
T Consensus 127 --g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~--------------------~~g~~i~~~~~~~~--------~ 176 (447)
T d1pw4a_ 127 --GWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH--------------------NVGGGIPPLLFLLG--------M 176 (447)
T ss_dssp --HHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHH--------------------HHHHTSHHHHHHHH--------H
T ss_pred --HHhhhhhhhHHHHHHHHHHHhhccccccccccccc--------------------chhhhhhhhhhhhH--------h
Confidence 9888776654444 677999999998888 88877777655211 1
Q ss_pred chhhHHHHHHHHhhHHHHHHHHHHh-ccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHHHHhhhhhccCccchH
Q psy7924 170 KFEASVYGLSIICALLPIFFVGLML-LMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDMQNSLEKERSDKVPLM 248 (481)
Q Consensus 170 ~~~~~w~~~~~~~~~~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (481)
....+||+.+++.+.+.++..+..+ +.+|+|+.......++. +.+...+..++..++...++...+
T Consensus 177 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~ 243 (447)
T d1pw4a_ 177 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-------------KNDYPDDYNEKAEQELTAKQIFMQ 243 (447)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-------------CCC-------------CCTHHHHH
T ss_pred hhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhh-------------hhhcccchhhccccccchhhHHHH
Confidence 1335799999988888777666665 46776643221111110 000000000011111111222334
Q ss_pred HHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHH
Q psy7924 249 QAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLL 327 (481)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~ 327 (481)
+.++++..+ ......++.....+....+...++.+..+.+. +.+.......+..+++.++.+++.||++|++...
T Consensus 244 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 319 (447)
T d1pw4a_ 244 YVLPNKLLW----YIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGA 319 (447)
T ss_dssp HTSSCHHHH----HHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHH
T ss_pred HHHcCchHH----HHHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhhhhhhhhhhhhhhhcccccccc
Confidence 455554222 22222222222222333333444445567776 5567788888899999999999999999876544
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHH-
Q psy7924 328 VSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVS- 406 (481)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g- 406 (481)
.................... ..+.+...+...+.+++.. +..+..+.+..|.+|++.|+++.|+.+..++++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g 392 (447)
T d1pw4a_ 320 TGVFFMTLVTIATIVYWMNP------AGNPTVDMICMIVIGFLIY-GPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGG 392 (447)
T ss_dssp HHHHHHHHHHHHHHHTTSCC------TTCHHHHHHHHHHHHHHHT-HHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHhcc------cccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHH
Confidence 44333333222222211100 1222333333333333322 233445578889999999999999999998885
Q ss_pred HHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhcc
Q psy7924 407 VLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVP 446 (481)
Q Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 446 (481)
..++|.+.+.+.|..|++..+.+..+++++..++.....+
T Consensus 393 ~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 432 (447)
T d1pw4a_ 393 SVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI 432 (447)
T ss_dssp HHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999988888877777776666655543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=4e-29 Score=231.08 Aligned_cols=371 Identities=13% Similarity=0.078 Sum_probs=228.7
Q ss_pred cccccccccc-cccCCCCcccCchhhHHHHHHHHHHHhhhhhhhhhhhccccchhhhhhhhhhHHHHhHHHHHHHHhHHh
Q psy7924 5 LGWTSPAGDR-LIAGEYPFLVTESDLSFIGSSMALGAVFGSPVVGNLVDTVGRKNTMLLLAVPTVTESDLSFIGSSMALG 83 (481)
Q Consensus 5 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~g~l~d~~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (481)
.+...|.+|. +.+ ++|+|++|+|++.+++.++..+++++.|+++||+|||++++++..+..++..+..+..+..
T Consensus 23 ~~~~~~~l~~~l~~---~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~-- 97 (417)
T d1pv7a_ 23 MGAYFPFFPIWLHD---INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-- 97 (417)
T ss_dssp HHHHHHHHHHHHHH---HHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH--
T ss_pred HHHHHHHHHHHHHH---ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh--
Confidence 4455677776 445 6899999999999999999999999999999999999999999999999888888876655
Q ss_pred HhhhhhHHHHhhccccccceeeeeeccc---------cccccchhhhhhHHHHHHHhhhccccccccccccccchhhhhh
Q psy7924 84 AVFGSPVVGNLVDTVGRKNTMLLLAVPS---------FDIRPLLGETSQVTVWVLISTTNRRISDKCFVGSDHLAILCPI 154 (481)
Q Consensus 84 ~l~g~~~~~r~~~~~G~~~~~~~~~~~~---------~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 154 (481)
......++.+.+. +...+........ .+++........... ..+..+++
T Consensus 98 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~ 155 (417)
T d1pv7a_ 98 LLQYNILVGSIVG--GIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFG--------------------CVGWALGA 155 (417)
T ss_dssp HHHTTCHHHHHHT--TTTGGGGGTTHHHHHHHHHHHHHHHHSCCHHHHHHHH--------------------HHHHHHHH
T ss_pred hHHHHHHHHHHHh--hhcccccccchhhcccccccchhhhhHHHHHHHhhhh--------------------cccccccc
Confidence 4322225555555 4444333322221 122333333333333 44445554
Q ss_pred hhhhhhhhhhHhhccchhhHHHHHHHHhhHHHHH-HHHHHhccCCChhHHhhcCcHHHHHHHHHHHhCCCccchHHHHHH
Q psy7924 155 SISQSRRLAQVIKERKFEASVYGLSIICALLPIF-FVGLMLLMPESPQFHLKKNRVKQAKESLQWFRGSEYDIDSEITDM 233 (481)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~-~~~~~~~~~esp~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 233 (481)
.++. .. ...+|+..+........+ ..+..+..+|+|+....+ ++
T Consensus 156 ~~~~---------~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------------------- 200 (417)
T d1pv7a_ 156 SIVG---------IM-FTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA---NA---------------------- 200 (417)
T ss_dssp HHHH---------HH-HHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---HH----------------------
T ss_pred cccc---------cc-ccccccccccchhhHHHHHHHHHHHHhcccccchhhh---hh----------------------
Confidence 4441 11 223444444444444444 444444577766321100 00
Q ss_pred HHhhhhhccCccchHHHhcCcchhhhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcC----CCC-chhHHHHHHHHHHHH
Q psy7924 234 QNSLEKERSDKVPLMQAFSTPAAKRGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAG----SSL-NPNLCTIIVGTIMMV 308 (481)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-~~~~~~~~~~~~~~~ 308 (481)
++.++++.......+.++++..+....... ...... .......+....... .+. ..........++..+
T Consensus 201 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (417)
T d1pv7a_ 201 -VGANHSAFSLKLALELFRQPKLWFLSLYVI-GVSCTY----DVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNAS 274 (417)
T ss_dssp -HHSCCCCCCHHHHHHHTTSSHHHHHHHHHH-HHHHHH----HHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -hhhhcccccccccccccccccccchhhhhH-HHHHHH----Hhhhccccccccccccccccchhhhccccccccccccc
Confidence 000111111222333344432222222222 111111 111111122221111 111 223455566677888
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCc
Q psy7924 309 TTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFP 388 (481)
Q Consensus 309 ~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p 388 (481)
+..+.+++.||.++|+.+..+..+.+++.+.+.. .++.+.......+.+.+.+.... ....++.|.+|
T Consensus 275 ~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~g~~~~~~~~-~~~~~~~~~~~ 342 (417)
T d1pv7a_ 275 IMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF-----------ATSALEVVILKTLHMFEVPFLLV-GCFKYITSQFE 342 (417)
T ss_dssp HHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT-----------CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSC
T ss_pred chhhhhhhhcccccccchhhhHHHHHHhhhcccc-----------ccccchhhHHHHHHHHHHHHHHH-HHHHHHHHHCC
Confidence 9999999999999999999998888887777655 23444555555555555555443 44588899999
Q ss_pred ccchhhHHHHHH-HHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHhccCCCCCCHHH
Q psy7924 389 SQIKGIAVSIAC-LFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALGAVFTYILVPETKGKTLDE 455 (481)
Q Consensus 389 ~~~r~~~~g~~~-~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (481)
++.|+++.++.. ....+|..++|.+.|.+.|..|++..+.+.+++.++..++..+.+++++..+.++
T Consensus 343 ~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 999999999865 4567899999999999999999999999998888888888878877766665543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=1.1e-15 Score=141.62 Aligned_cols=184 Identities=15% Similarity=0.130 Sum_probs=133.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhhhHhhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy7924 258 RGLLIGLGVMFIQQFGGINAVVFYTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS 336 (481)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~ 336 (481)
+..+..+++................|++ ++.|.+. +.++......++..++.++.|+++||+|||+.+..+.++.+++
T Consensus 24 w~i~~~~~~~~~~~~~~~~~~~~~~p~~-~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~ 102 (447)
T d1pw4a_ 24 WQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAV 102 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 3334333333333332223444555655 4578887 7788899999999999999999999999999999999998888
Q ss_pred HHHHHHHHhhcCCCCCccccchhHHHHHHHHHHHHhhccCchhhhhhcccCcccchhhHHHHHHHHHHHHHHHHHhHHHH
Q psy7924 337 TLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSLGFGPIPWMLVGEIFPSQIKGIAVSIACLFNWVSVLVVTKFFGD 416 (481)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~~~ 416 (481)
.++.+..... .++.+...+...+.+.+.+...... ..++.|.+|+++|+++.++.+....+|..++|.+.+.
T Consensus 103 ~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~-~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~ 174 (447)
T d1pw4a_ 103 MLFMGFVPWA-------TSSIAVMFVLLFLCGWFQGMGWPPC-GRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL 174 (447)
T ss_dssp HHHHHHCHHH-------HSSSSHHHHHHHHHHHHHHHTHHHH-HHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred Hhhccccchh-------hhhHHHHHHHHHHHHHhhhhhhhHH-HHHHHHHHHhhcccccccccccccchhhhhhhhhhhh
Confidence 8877653211 1233444555555555555444444 4788999999999999999999999999999998887
Q ss_pred HHHhh-cCChhHHHHHHHHHHHHHHHHHhccCCCC
Q psy7924 417 VTLLL-GGHGAFWIFSVIAALGAVFTYILVPETKG 450 (481)
Q Consensus 417 ~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (481)
..+.. +|+..+.+.+.+..+..++.+...+++++
T Consensus 175 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (447)
T d1pw4a_ 175 GMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 209 (447)
T ss_dssp HHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HhhhhhcccccchhhhhhHHHHHHHHHHhcccchh
Confidence 66654 78888888888888887777777765543
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=3e-10 Score=102.87 Aligned_cols=163 Identities=15% Similarity=0.130 Sum_probs=97.5
Q ss_pred hhHHHhhhcCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccchh
Q psy7924 281 YTVKIFKDAGSSL-NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWL 359 (481)
Q Consensus 281 ~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (481)
.+.++.++.|.+. +.+.......+...++.++.|+++||+|||+.+..+.....++........... .....
T Consensus 30 l~~~l~~~~g~s~~~~g~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~ 102 (417)
T d1pv7a_ 30 FPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGP-------LLQYN 102 (417)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHHHHTHHH-------HHHTT
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHhhhhh-------hHHHH
Confidence 3334556678887 678888899999999999999999999999999988887777766665531100 00111
Q ss_pred HHHHHHHHHHHHhhccCchhhhhhcccCc--ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHhhcCChhHHHHHHHHHHH
Q psy7924 360 PLGSLCVFIIVFSLGFGPIPWMLVGEIFP--SQIKGIAVSIACLFNWVSVLVVTKFFGDVTLLLGGHGAFWIFSVIAALG 437 (481)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~p--~~~r~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 437 (481)
........+...+....+.. ....+..+ .+.+....+........+..+++.+.+.+.+. +++..+........+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~ 180 (417)
T d1pv7a_ 103 ILVGSIVGGIYLGFCFNAGA-PAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFTI-NNQFVFWLGSGCALIL 180 (417)
T ss_dssp CHHHHHHTTTTGGGGGTTHH-HHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHH-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcccccccchh-hcccccccchhhhhHHHHHHHhhhhccccccccccccccccc-cccccccchhhHHHHH
Confidence 11111111111111122222 11112222 23445566677777778888888888776654 4445566666666666
Q ss_pred HHHHHHhccCCCCCC
Q psy7924 438 AVFTYILVPETKGKT 452 (481)
Q Consensus 438 ~~~~~~~~~~~~~~~ 452 (481)
.++..+..++++...
T Consensus 181 ~~~~~~~~~~~~~~~ 195 (417)
T d1pv7a_ 181 AVLLFFAKTDAPSSA 195 (417)
T ss_dssp HHHHHSSCCCSCSSS
T ss_pred HHHHHHHhcccccch
Confidence 666666666654443
|