Psyllid ID: psy7928

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-------
Protein Sequence
MGHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHcccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mghgvlwnpnlcTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLknsgsdvsnigwlplgsLCVFIIVFSL
Flexible Loop (DISEMBL)
mghgvlwnpNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL
Low Complexity Region (SEG)
MGHGVLWNPNLCtiivgtimmvttwiATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL
Disordered region (IsUnstruct)
***GVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVF**
Disordered Region (DISOPRED)
********PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL
Disordered Region (DISEMBL)
MGHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL
Disordered Region (DISPRO)
*****LWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL
Transmembrane Helix (TMHMM)
oooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	87	2.2.26 [Sep-21-2011]
Q17NV8	806	Facilitated trehalose tra	N/A	N/A	0.965	0.104	0.511	4e-22
Q7PIR5	793	Facilitated trehalose tra	yes	N/A	0.965	0.105	0.523	1e-21
A5LGM7	504	Facilitated trehalose tra	N/A	N/A	0.908	0.156	0.569	2e-20
B0WC46	517	Facilitated trehalose tra	N/A	N/A	0.919	0.154	0.525	8e-20
B4LPX5	911	Facilitated trehalose tra	N/A	N/A	0.896	0.085	0.512	2e-19
B4KR05	863	Facilitated trehalose tra	N/A	N/A	0.896	0.090	0.525	4e-19
Q291H8	868	Facilitated trehalose tra	yes	N/A	0.896	0.089	0.5	2e-18
B4GAP7	869	Facilitated trehalose tra	N/A	N/A	0.896	0.089	0.5	2e-18
B3MG58	866	Facilitated trehalose tra	N/A	N/A	0.896	0.090	0.487	6e-18
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.896	0.091	0.487	2e-17

>sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 64/84 (76%)

Query: 4   GVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNS 63
           G   + NLCTIIVG +  + T+IATM++DRLGR++LL +S V M ++ +T+G +FY+KNS
Sbjct: 616 GSTIDENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNS 675

Query: 64  GSDVSNIGWLPLGSLCVFIIVFSL 87
           G DVS +GWLPL +  ++++ FSL
Sbjct: 676 GQDVSQVGWLPLAAFVIYVLGFSL 699

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.
Aedes aegypti (taxid: 7159)

>sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3

 Score =  102 bits (253), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 63/84 (75%)

Query: 4   GVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNS 63
           G   +  LCTIIVG +  + T+IAT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+
Sbjct: 603 GSTIDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNN 662

Query: 64  GSDVSNIGWLPLGSLCVFIIVFSL 87
           G DVS IGWLPL +  VF++ FSL
Sbjct: 663 GDDVSEIGWLPLAAFVVFVVGFSL 686

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Anopheles gambiae (taxid: 7165)

>sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 61/79 (77%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           + NLCTIIVG +    T+ AT+++DRLGR+ILL +S V M ++ LT+G +FY KNSG+DV
Sbjct: 318 DENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDV 377

Query: 68  SNIGWLPLGSLCVFIIVFS 86
           SNIGWLPL S  +++I FS
Sbjct: 378 SNIGWLPLASFVIYVIGFS 396

High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Polypedilum vanderplanki (taxid: 319348)

>sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 64/80 (80%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           + NLCTIIVG +  + T+IAT+++DRLGR++LL +S + M ++ +T+G +FY+KN+G DV
Sbjct: 331 DENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDV 390

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
           S+IGWLPL S  +F++ FSL
Sbjct: 391 SHIGWLPLASFVIFVLGFSL 410

High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Culex quinquefasciatus (taxid: 7176)

>sp|B4LPX5|TRET1_DROVI Facilitated trehalose transporter Tret1 OS=Drosophila virilis GN=Tret1 PE=3 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/78 (51%), Positives = 57/78 (73%)

Query: 10  NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
           N+CTIIVG +    T+IAT+++DR GR++LL VS V+M L+   +G +FY K+SG D SN
Sbjct: 727 NVCTIIVGVVNFAATFIATILIDRAGRKVLLYVSNVMMVLTLFVLGGFFYCKSSGMDTSN 786

Query: 70  IGWLPLGSLCVFIIVFSL 87
           +GWLPL    ++I+ FSL
Sbjct: 787 VGWLPLSCFVIYILGFSL 804

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila virilis (taxid: 7244)

>sp|B4KR05|TRET1_DROMO Facilitated trehalose transporter Tret1 OS=Drosophila mojavensis GN=Tret1 PE=3 SV=2

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/78 (52%), Positives = 57/78 (73%)

Query: 10  NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
           N+CTIIVG +  + T+IAT+++DR GR+ILL VS V M L+   +G +FY K++G D SN
Sbjct: 679 NVCTIIVGVVNFMATFIATVLIDRAGRKILLYVSNVAMILTLFVLGGFFYCKSTGMDTSN 738

Query: 70  IGWLPLGSLCVFIIVFSL 87
           +GWLPL    V+I+ FSL
Sbjct: 739 VGWLPLSCFVVYILGFSL 756

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila mojavensis (taxid: 7230)

>sp|Q291H8|TRET1_DROPS Facilitated trehalose transporter Tret1 OS=Drosophila pseudoobscura pseudoobscura GN=Tret1 PE=3 SV=3

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 56/78 (71%)

Query: 10  NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
           NLCTIIVG +  + T+IAT+++DR GR+ILL VS + M ++   +G +FY K+ G DVS 
Sbjct: 684 NLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVSQ 743

Query: 70  IGWLPLGSLCVFIIVFSL 87
           +GWLPL    ++I+ FSL
Sbjct: 744 LGWLPLSCFVIYILGFSL 761

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GAP7|TRET1_DROPE Facilitated trehalose transporter Tret1 OS=Drosophila persimilis GN=Tret1 PE=3 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/78 (50%), Positives = 56/78 (71%)

Query: 10  NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
           NLCTIIVG +  + T+IAT+++DR GR+ILL VS + M ++   +G +FY K+ G DVS 
Sbjct: 685 NLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVSQ 744

Query: 70  IGWLPLGSLCVFIIVFSL 87
           +GWLPL    ++I+ FSL
Sbjct: 745 LGWLPLSCFVIYILGFSL 762

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila persimilis (taxid: 7234)

>sp|B3MG58|TRET1_DROAN Facilitated trehalose transporter Tret1 OS=Drosophila ananassae GN=Tret1 PE=3 SV=2

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 56/78 (71%)

Query: 10  NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
           N+CTIIVG +  + T+IAT+++DR GR+ILL VS + M ++   +G +FY K  G DVS+
Sbjct: 682 NVCTIIVGVVNFLATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKAHGPDVSH 741

Query: 70  IGWLPLGSLCVFIIVFSL 87
           +GWLPL    ++I+ FSL
Sbjct: 742 LGWLPLSCFVIYILGFSL 759

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila ananassae (taxid: 7217)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 38/78 (48%), Positives = 54/78 (69%)

Query: 10  NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
           N+CTIIVG +  + T+I  +++DR GR+ILL VS + M L+   +G +FY K  G DVSN
Sbjct: 672 NICTIIVGVVNFLATFIGIVLIDRAGRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSN 731

Query: 70  IGWLPLGSLCVFIIVFSL 87
           +GWLPL    ++I+ FSL
Sbjct: 732 LGWLPLTCFVIYILGFSL 749

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
157104959	806	sugar transporter [Aedes aegypti] gi|122	0.965	0.104	0.511	2e-20
158294383	793	AGAP005563-PA [Anopheles gambiae str. PE	0.965	0.105	0.523	4e-20
289742799	479	solute carrier family 2 [Glossina morsit	0.919	0.167	0.555	1e-19
405132179	504	trehalose transporter 1 [Belgica antarct	0.919	0.158	0.537	7e-19
300681126	504	RecName: Full=Facilitated trehalose tran	0.908	0.156	0.569	9e-19
312384894	394	hypothetical protein AND_01420 [Anophele	0.919	0.203	0.537	2e-18
383858089	472	PREDICTED: facilitated trehalose transpo	0.919	0.169	0.525	3e-18
158294385	490	AGAP005563-PB [Anopheles gambiae str. PE	0.919	0.163	0.537	3e-18
164454391	504	trehalose transporter AgTRET1 [Anopheles	0.919	0.158	0.537	3e-18
170036862	517	sugar transporter [Culex quinquefasciatu	0.919	0.154	0.525	3e-18

>gi|157104959|ref|XP_001648649.1| sugar transporter [Aedes aegypti] gi|122069442|sp|Q17NV8.1|TRET1_AEDAE RecName: Full=Facilitated trehalose transporter Tret1 gi|108884141|gb|EAT48366.1| AAEL000567-PA [Aedes aegypti]

 Score =  103 bits (256), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/84 (51%), Positives = 64/84 (76%)

Query: 4   GVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNS 63
           G   + NLCTIIVG +  + T+IATM++DRLGR++LL +S V M ++ +T+G +FY+KNS
Sbjct: 616 GSTIDENLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNS 675

Query: 64  GSDVSNIGWLPLGSLCVFIIVFSL 87
           G DVS +GWLPL +  ++++ FSL
Sbjct: 676 GQDVSQVGWLPLAAFVIYVLGFSL 699

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294383|ref|XP_315568.3| AGAP005563-PA [Anopheles gambiae str. PEST] gi|300681253|sp|Q7PIR5.3|TRET1_ANOGA RecName: Full=Facilitated trehalose transporter Tret1; Short=AgTRET1 gi|157015538|gb|EAA44045.3| AGAP005563-PA [Anopheles gambiae str. PEST]

 Score =  102 bits (253), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 44/84 (52%), Positives = 63/84 (75%)

Query: 4   GVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNS 63
           G   +  LCTIIVG +  + T+IAT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+
Sbjct: 603 GSTIDEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNN 662

Query: 64  GSDVSNIGWLPLGSLCVFIIVFSL 87
           G DVS IGWLPL +  VF++ FSL
Sbjct: 663 GDDVSEIGWLPLAAFVVFVVGFSL 686

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289742799|gb|ADD20147.1| solute carrier family 2 [Glossina morsitans morsitans]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 67/81 (82%), Gaps = 1/81 (1%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLK-NSGSD 66
           + NL TI+VG + ++ T+++ M+VD+LGRR+LLL SA++MALST+ MG YFY+K N  + 
Sbjct: 287 DENLSTIVVGVMQVIATFVSVMVVDKLGRRLLLLASAIVMALSTVAMGVYFYMKDNDNAS 346

Query: 67  VSNIGWLPLGSLCVFIIVFSL 87
           V+N+GWLP+ +LCVFII+FS+
Sbjct: 347 VANLGWLPVSALCVFIIMFSI 367

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405132179|gb|AFS17323.1| trehalose transporter 1 [Belgica antarctica]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 63/80 (78%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           + NLCTIIVG +  + T+IAT+++DRLGR+ LL +S V M ++ +T+G +FY KN+G D+
Sbjct: 318 DENLCTIIVGVVNFIATFIATILIDRLGRKKLLYISDVFMIITLMTLGSFFYYKNNGGDI 377

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
           SNIGWLPLG+  +F++ FSL
Sbjct: 378 SNIGWLPLGAFVIFVVGFSL 397

Source: Belgica antarctica

Species: Belgica antarctica

Genus: Belgica

Family: Chironomidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|300681126|sp|A5LGM7.1|TRET1_POLVA RecName: Full=Facilitated trehalose transporter Tret1; Short=PvTret1 gi|148726581|dbj|BAF63703.1| facilitated trehalose transporter [Polypedilum vanderplanki]

 Score = 97.4 bits (241), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 61/79 (77%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           + NLCTIIVG +    T+ AT+++DRLGR+ILL +S V M ++ LT+G +FY KNSG+DV
Sbjct: 318 DENLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDV 377

Query: 68  SNIGWLPLGSLCVFIIVFS 86
           SNIGWLPL S  +++I FS
Sbjct: 378 SNIGWLPLASFVIYVIGFS 396

Source: Polypedilum vanderplanki

Species: Polypedilum vanderplanki

Genus: Polypedilum

Family: Chironomidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312384894|gb|EFR29513.1| hypothetical protein AND_01420 [Anopheles darlingi]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 64/80 (80%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           + N+CTIIVG +  + T+IAT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+G DV
Sbjct: 208 DENICTIIVGCVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDV 267

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
           S+IGWLPL +  VF++ FSL
Sbjct: 268 SHIGWLPLAAFVVFVLGFSL 287

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858089|ref|XP_003704535.1| PREDICTED: facilitated trehalose transporter Tret1-like [Megachile rotundata]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 63/80 (78%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           +P+  +IIVG I ++  +++T++VDRLGR+ILLL+SA+ M L+T  +G YFYL+N+G DV
Sbjct: 304 SPSESSIIVGAIQVIAVFLSTLVVDRLGRKILLLLSAIFMCLTTCALGIYFYLQNNGEDV 363

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
           S + WLPL ++C+FI VFS 
Sbjct: 364 SAVSWLPLVAVCIFITVFSF 383

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294385|ref|XP_001688679.1| AGAP005563-PB [Anopheles gambiae str. PEST] gi|158294387|ref|XP_001688680.1| AGAP005563-PC [Anopheles gambiae str. PEST] gi|157015539|gb|EDO63685.1| AGAP005563-PB [Anopheles gambiae str. PEST] gi|157015540|gb|EDO63686.1| AGAP005563-PC [Anopheles gambiae str. PEST]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 62/80 (77%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           +  LCTIIVG +  + T+IAT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+G DV
Sbjct: 304 DEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDV 363

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
           S IGWLPL +  VF++ FSL
Sbjct: 364 SEIGWLPLAAFVVFVVGFSL 383

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|164454391|dbj|BAF96742.1| trehalose transporter AgTRET1 [Anopheles gambiae]

 Score = 95.9 bits (237), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 62/80 (77%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           +  LCTIIVG +  + T+IAT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+G DV
Sbjct: 318 DEKLCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDV 377

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
           S IGWLPL +  VF++ FSL
Sbjct: 378 SEIGWLPLAAFVVFVVGFSL 397

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170036862|ref|XP_001846280.1| sugar transporter [Culex quinquefasciatus] gi|300681185|sp|B0WC46.1|TRET1_CULQU RecName: Full=Facilitated trehalose transporter Tret1 gi|167879815|gb|EDS43198.1| sugar transporter [Culex quinquefasciatus]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 64/80 (80%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           + NLCTIIVG +  + T+IAT+++DRLGR++LL +S + M ++ +T+G +FY+KN+G DV
Sbjct: 331 DENLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDV 390

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
           S+IGWLPL S  +F++ FSL
Sbjct: 391 SHIGWLPLASFVIFVLGFSL 410

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	87
UNIPROTKB|A5LGM7	504	Tret1 "Facilitated trehalose t	0.885	0.152	0.506	3.5e-16
UNIPROTKB|B0WC46	517	Tret1 "Facilitated trehalose t	0.896	0.150	0.448	4.5e-15
UNIPROTKB|Q17NV8	806	Tret1 "Facilitated trehalose t	0.896	0.096	0.448	1.2e-14
UNIPROTKB|Q7PIR5	793	Tret1 "Facilitated trehalose t	0.885	0.097	0.467	2e-14
FB|FBgn0034247	465	CG6484 [Drosophila melanogaste	0.701	0.131	0.564	9.1e-14
FB|FBgn0036316	539	CG10960 [Drosophila melanogast	0.701	0.113	0.548	1.6e-13
UNIPROTKB|B4LPX5	911	Tret1 "Facilitated trehalose t	0.896	0.085	0.423	9.7e-13
UNIPROTKB|B4KR05	863	Tret1 "Facilitated trehalose t	0.896	0.090	0.435	3.1e-12
UNIPROTKB|A9ZSY3	505	Tret1 "Facilitated trehalose t	0.701	0.120	0.491	7.5e-12
UNIPROTKB|Q291H8	868	Tret1 "Facilitated trehalose t	0.896	0.089	0.410	8.3e-12

UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)]

 Score = 209 (78.6 bits), Expect = 3.5e-16, P = 3.5e-16
 Identities = 39/77 (50%), Positives = 52/77 (67%)

Query:    10 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
             NLC              AT+++DRLGR+ILL +S V M ++ LT+G +FY KNSG+DVSN
Sbjct:   320 NLCTIIVGVVNFGATFFATVLIDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSN 379

Query:    70 IGWLPLGSLCVFIIVFS 86
             IGWLPL S  +++I FS
Sbjct:   380 IGWLPLASFVIYVIGFS 396

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|B0WC46 Tret1 "Facilitated trehalose transporter Tret1" [Culex quinquefasciatus (taxid:7176)]

 Score = 199 (75.1 bits), Expect = 4.5e-15, P = 4.5e-15
 Identities = 35/78 (44%), Positives = 53/78 (67%)

Query:    10 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
             NLC              AT+++DRLGR++LL +S + M ++ +T+G +FY+KN+G DVS+
Sbjct:   333 NLCTIIVGVVNFIATFIATLLIDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSH 392

Query:    70 IGWLPLGSLCVFIIVFSL 87
             IGWLPL S  +F++ FSL
Sbjct:   393 IGWLPLASFVIFVLGFSL 410

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|Q17NV8 Tret1 "Facilitated trehalose transporter Tret1" [Aedes aegypti (taxid:7159)]

 Score = 198 (74.8 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 35/78 (44%), Positives = 52/78 (66%)

Query:    10 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
             NLC              ATM++DRLGR++LL +S V M ++ +T+G +FY+KNSG DVS 
Sbjct:   622 NLCTIIVGVVNFIATFIATMLIDRLGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQ 681

Query:    70 IGWLPLGSLCVFIIVFSL 87
             +GWLPL +  ++++ FSL
Sbjct:   682 VGWLPLAAFVIYVLGFSL 699

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

GO:0044459 "plasma membrane part" evidence=ISS

UNIPROTKB|Q7PIR5 Tret1 "Facilitated trehalose transporter Tret1" [Anopheles gambiae (taxid:7165)]

 Score = 196 (74.1 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 36/77 (46%), Positives = 51/77 (66%)

Query:    11 LCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNI 70
             LC              AT+++DRLGR+ILL +S V M ++ +T+G +FY+KN+G DVS I
Sbjct:   610 LCTIIVGVVNFIATFIATVLIDRLGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEI 669

Query:    71 GWLPLGSLCVFIIVFSL 87
             GWLPL +  VF++ FSL
Sbjct:   670 GWLPLAAFVVFVVGFSL 686

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

FB|FBgn0034247 CG6484 [Drosophila melanogaster (taxid:7227)]

 Score = 186 (70.5 bits), Expect = 9.1e-14, P = 9.1e-14
 Identities = 35/62 (56%), Positives = 46/62 (74%)

Query:    27 ATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLK-NSGSDVSNIGWLPLGSLCVFIIVF 85
             A  I+D+ GRRILLL+S V+MA+ST  MG YF LK N  + + N GWLP+ S+C+FII F
Sbjct:   303 AVAIIDKAGRRILLLISGVLMAVSTALMGVYFQLKENDPASMDNFGWLPISSICIFIIFF 362

Query:    86 SL 87
             S+
Sbjct:   363 SI 364

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0036316 CG10960 [Drosophila melanogaster (taxid:7227)]

 Score = 185 (70.2 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 34/62 (54%), Positives = 49/62 (79%)

Query:    27 ATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYL-KNSGSDVSNIGWLPLGSLCVFIIVF 85
             +T++VD+LGRRILLL S + MA+ST  +G YF+L K   + V ++GWLP+ SLC+FII+F
Sbjct:   377 STLVVDKLGRRILLLASGISMAISTTAIGVYFFLQKQDAAQVVSLGWLPVASLCLFIIMF 436

Query:    86 SL 87
             S+
Sbjct:   437 SI 438

GO:0005355 "glucose transmembrane transporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0046427 "positive regulation of JAK-STAT cascade" evidence=IMP

UNIPROTKB|B4LPX5 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila virilis (taxid:7244)]

 Score = 181 (68.8 bits), Expect = 9.7e-13, P = 9.7e-13
 Identities = 33/78 (42%), Positives = 48/78 (61%)

Query:    10 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
             N+C              AT+++DR GR++LL VS V+M L+   +G +FY K+SG D SN
Sbjct:   727 NVCTIIVGVVNFAATFIATILIDRAGRKVLLYVSNVMMVLTLFVLGGFFYCKSSGMDTSN 786

Query:    70 IGWLPLGSLCVFIIVFSL 87
             +GWLPL    ++I+ FSL
Sbjct:   787 VGWLPLSCFVIYILGFSL 804

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|B4KR05 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila mojavensis (taxid:7230)]

 Score = 176 (67.0 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/78 (43%), Positives = 47/78 (60%)

Query:    10 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
             N+C              AT+++DR GR+ILL VS V M L+   +G +FY K++G D SN
Sbjct:   679 NVCTIIVGVVNFMATFIATVLIDRAGRKILLYVSNVAMILTLFVLGGFFYCKSTGMDTSN 738

Query:    70 IGWLPLGSLCVFIIVFSL 87
             +GWLPL    V+I+ FSL
Sbjct:   739 VGWLPLSCFVVYILGFSL 756

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

UNIPROTKB|A9ZSY3 Tret1 "Facilitated trehalose transporter Tret1" [Bombyx mori (taxid:7091)]

 Score = 169 (64.5 bits), Expect = 7.5e-12, P = 7.5e-12
 Identities = 30/61 (49%), Positives = 45/61 (73%)

Query:    27 ATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVFS 86
             ATM++DRLGR++LL +S+V M  + L +G YFYLK +  DV+  GWLPL  L ++++ FS
Sbjct:   340 ATMLIDRLGRKVLLYISSVAMITTLLALGAYFYLKQNHIDVTAYGWLPLACLVIYVLGFS 399

Query:    87 L 87
             +
Sbjct:   400 I 400

GO:0015574 "trehalose transmembrane transporter activity" evidence=IDA

GO:0015771 "trehalose transport" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0015767 "lactose transport" evidence=IDA

GO:0015768 "maltose transport" evidence=IDA

GO:0015770 "sucrose transport" evidence=IDA

UNIPROTKB|Q291H8 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 172 (65.6 bits), Expect = 8.3e-12, P = 8.3e-12
 Identities = 32/78 (41%), Positives = 46/78 (58%)

Query:    10 NLCXXXXXXXXXXXXXXATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSN 69
             NLC              AT+++DR GR+ILL VS + M ++   +G +FY K+ G DVS 
Sbjct:   684 NLCTIIVGIVNFMATFIATLLIDRAGRKILLYVSNIAMIITLFVLGGFFYCKSHGQDVSQ 743

Query:    70 IGWLPLGSLCVFIIVFSL 87
             +GWLPL    ++I+ FSL
Sbjct:   744 LGWLPLSCFVIYILGFSL 761

GO:0005886 "plasma membrane" evidence=ISS

GO:0015574 "trehalose transmembrane transporter activity" evidence=ISS

GO:0015771 "trehalose transport" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7PIR5	TRET1_ANOGA	No assigned EC number	0.5238	0.9655	0.1059	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	87
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	5e-08
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-07
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	1e-06

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 13  TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGW 72
           +IIVG +    T++A  +VDR GRR LLL+ A  MA+    +G       +GS  S  G 
Sbjct: 325 SIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTGSSKS-SGN 383

Query: 73  LPLGSLCVFIIVFSL 87
           + +  + +FI  F++
Sbjct: 384 VAIVFILLFIAFFAM 398

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 22/57 (38%), Positives = 33/57 (57%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSG 64
              L TIIVG I +  T +A M VD+ GR+ L ++ A+ MA+   ++G  FY +  G
Sbjct: 307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPG 363

Length = 479

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 8   NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDV 67
           +  L TIIVG +  V T+IA  +VDR GRR LLL+ A  MA+  L +G            
Sbjct: 287 DSLLVTIIVGVVNFVFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA 346

Query: 68  SNIGWLPLGSLCVFIIVFSL 87
             +    +  + +FI  F+L
Sbjct: 347 GIVA---IVFILLFIAFFAL 363

Length = 449

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	87
KOG0569|consensus	485		99.18
KOG0254|consensus	513		98.94
PRK10077	479	xylE D-xylose transporter XylE; Provisional	98.06
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.74
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.54
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.53
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.51
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.5
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.49
TIGR00900	365	2A0121 H+ Antiporter protein.	97.48
TIGR00891	405	2A0112 putative sialic acid transporter.	97.48
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.48
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.47
TIGR00893	399	2A0114 d-galactonate transporter.	97.45
KOG0252|consensus	538		97.44
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.44
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.42
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.42
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.4
PRK12382	392	putative transporter; Provisional	97.39
TIGR00895	398	2A0115 benzoate transport.	97.38
PRK05122	399	major facilitator superfamily transporter; Provisi	97.38
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.38
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.36
PRK12307	426	putative sialic acid transporter; Provisional	97.36
PRK09705	393	cynX putative cyanate transporter; Provisional	97.36
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.34
PF12832	77	MFS_1_like: MFS_1 like family	97.33
TIGR00897	402	2A0118 polyol permease family. This family of prot	97.32
PRK09952	438	shikimate transporter; Provisional	97.3
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.3
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.29
TIGR00898	505	2A0119 cation transport protein.	97.29
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.28
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.26
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.26
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.26
PRK10207	489	dipeptide/tripeptide permease B; Provisional	97.24
PRK03699	394	putative transporter; Provisional	97.24
PRK03545	390	putative arabinose transporter; Provisional	97.24
PRK10133	438	L-fucose transporter; Provisional	97.23
TIGR00898	505	2A0119 cation transport protein.	97.23
PRK10091	382	MFS transport protein AraJ; Provisional	97.22
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.22
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	97.22
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.21
PRK11652	394	emrD multidrug resistance protein D; Provisional	97.21
PRK10054	395	putative transporter; Provisional	97.21
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.18
PRK10642	490	proline/glycine betaine transporter; Provisional	97.18
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.18
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	97.16
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.16
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	97.15
PRK10642	490	proline/glycine betaine transporter; Provisional	97.14
PLN00028	476	nitrate transmembrane transporter; Provisional	97.14
PRK03893	496	putative sialic acid transporter; Provisional	97.13
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.12
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.1
PRK09528	420	lacY galactoside permease; Reviewed	97.09
PRK15075	434	citrate-proton symporter; Provisional	97.07
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.07
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.06
PRK03633	381	putative MFS family transporter protein; Provision	97.04
PRK11663	434	regulatory protein UhpC; Provisional	97.03
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.03
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.02
PRK09952	438	shikimate transporter; Provisional	97.02
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.01
TIGR00896	355	CynX cyanate transporter. This family of proteins	96.98
PRK11043	401	putative transporter; Provisional	96.98
TIGR00901	356	2A0125 AmpG-related permease.	96.96
PRK15075	434	citrate-proton symporter; Provisional	96.94
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.92
PRK10473	392	multidrug efflux system protein MdtL; Provisional	96.88
PRK14995	495	methyl viologen resistance protein SmvA; Provision	96.88
KOG0255|consensus	521		96.88
PRK09874	408	drug efflux system protein MdtG; Provisional	96.87
PRK10504	471	putative transporter; Provisional	96.86
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.86
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	96.86
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.85
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.83
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.8
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	96.79
PRK12307	426	putative sialic acid transporter; Provisional	96.78
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.78
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	96.77
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.76
PRK11646	400	multidrug resistance protein MdtH; Provisional	96.75
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.75
PRK03893	496	putative sialic acid transporter; Provisional	96.75
KOG2615|consensus	451		96.74
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	96.73
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	96.72
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	96.72
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	96.69
TIGR00891	405	2A0112 putative sialic acid transporter.	96.69
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.68
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.68
KOG0253|consensus	528		96.66
TIGR00900	365	2A0121 H+ Antiporter protein.	96.64
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	96.61
PRK10091	382	MFS transport protein AraJ; Provisional	96.6
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.5
PRK03699	394	putative transporter; Provisional	96.48
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.47
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	96.46
PF13347	428	MFS_2: MFS/sugar transport protein	96.43
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	96.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	96.41
TIGR00895	398	2A0115 benzoate transport.	96.39
KOG0254|consensus	513		96.35
PRK15011	393	sugar efflux transporter B; Provisional	96.34
PRK11010	491	ampG muropeptide transporter; Validated	96.28
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.23
COG2211	467	MelB Na+/melibiose symporter and related transport	96.23
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.21
PRK09528	420	lacY galactoside permease; Reviewed	96.19
PRK10504	471	putative transporter; Provisional	96.14
PRK09705	393	cynX putative cyanate transporter; Provisional	96.12
PRK10489	417	enterobactin exporter EntS; Provisional	96.11
PRK10133	438	L-fucose transporter; Provisional	96.11
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	96.07
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.02
PRK11902	402	ampG muropeptide transporter; Reviewed	96.0
PRK03633	381	putative MFS family transporter protein; Provision	95.95
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.94
PRK09848	448	glucuronide transporter; Provisional	95.92
PRK05122	399	major facilitator superfamily transporter; Provisi	95.87
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.85
PRK03545	390	putative arabinose transporter; Provisional	95.83
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	95.78
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.78
PLN00028	476	nitrate transmembrane transporter; Provisional	95.72
PRK10429	473	melibiose:sodium symporter; Provisional	95.72
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.7
KOG1330|consensus	493		95.66
PRK09874	408	drug efflux system protein MdtG; Provisional	95.63
PRK09669	444	putative symporter YagG; Provisional	95.59
PRK11902	402	ampG muropeptide transporter; Reviewed	95.56
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.47
PRK11043	401	putative transporter; Provisional	95.46
KOG0569|consensus	485		95.37
PTZ00207	591	hypothetical protein; Provisional	95.35
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.28
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	95.21
PRK12382	392	putative transporter; Provisional	95.18
PF05631	354	DUF791: Protein of unknown function (DUF791); Inte	95.06
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	94.97
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	94.87
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	94.81
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	94.77
TIGR00893	399	2A0114 d-galactonate transporter.	94.73
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	94.69
PRK11462	460	putative transporter; Provisional	94.53
PRK10489	417	enterobactin exporter EntS; Provisional	94.47
TIGR00805	633	oat sodium-independent organic anion transporter.	94.31
KOG3764|consensus	464		94.23
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	94.02
PRK10429	473	melibiose:sodium symporter; Provisional	93.98
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	93.94
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	93.8
TIGR00901	356	2A0125 AmpG-related permease.	93.77
COG2270	438	Permeases of the major facilitator superfamily [Ge	93.66
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	93.42
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	93.35
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	93.27
KOG3762|consensus	618		93.04
PRK15011	393	sugar efflux transporter B; Provisional	92.95
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	92.88
PRK11010	491	ampG muropeptide transporter; Validated	92.81
KOG0252|consensus	538		92.79
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.63
PRK10213	394	nepI ribonucleoside transporter; Reviewed	92.54
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	92.42
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	92.22
KOG2504|consensus	509		92.09
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	92.08
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	92.01
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	91.97
KOG2563|consensus	480		91.87
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	91.59
PRK09669	444	putative symporter YagG; Provisional	91.15
PRK09848	448	glucuronide transporter; Provisional	90.96
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	90.37
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	90.29
PRK11663	434	regulatory protein UhpC; Provisional	90.06
KOG2532|consensus	466		89.8
PF05978	156	UNC-93: Ion channel regulatory protein UNC-93; Int	89.64
KOG2532|consensus	466		89.49
PRK11195	393	lysophospholipid transporter LplT; Provisional	89.34
PF13347	428	MFS_2: MFS/sugar transport protein	89.2
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	88.12
KOG0255|consensus	521		87.96
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	87.84
TIGR00788	468	fbt folate/biopterin transporter. The only functio	87.18
TIGR00892	455	2A0113 monocarboxylate transporter 1.	87.11
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	87.07
KOG4686|consensus	459		85.69
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	85.0
PRK11462	460	putative transporter; Provisional	84.68
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	84.66
TIGR00788	468	fbt folate/biopterin transporter. The only functio	84.18
COG0477	338	ProP Permeases of the major facilitator superfamil	83.75
PRK10054	395	putative transporter; Provisional	83.56
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	81.22
KOG2816|consensus	463		80.07

>KOG0569|consensus

Probab=99.18  E-value=1.6e-10  Score=77.21  Aligned_cols=84  Identities=31%  Similarity=0.545  Sum_probs=69.7

Q ss_pred             CCCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCccccchHHHHHHHH
Q psy7928           1 MGHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCV   80 (87)
Q Consensus         1 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (87)
                      +|++.+ ++..++...+.++++.++++.+++||+|||++++.+..++.++.+++.......+..  ..+..|..+++.++
T Consensus       300 aG~~~~-~a~~an~~~g~v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~--~~~~~y~~i~~~~~  376 (485)
T KOG0569|consen  300 AGFTPE-EAQYANLGIGIVNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF--GSWLSYLCIAAIFL  376 (485)
T ss_pred             cCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHH
Confidence            366776 788999999999999999999999999999999999999999999988765444321  14556677888999


Q ss_pred             HHHHhcC
Q psy7928          81 FIIVFSL   87 (87)
Q Consensus        81 ~~~~~~~   87 (87)
                      |.++|++
T Consensus       377 ~~~~f~~  383 (485)
T KOG0569|consen  377 FIISFAI  383 (485)
T ss_pred             HHHhhhc
Confidence            9988864

>KOG0254|consensus

Probab=98.94  E-value=1.7e-08  Score=67.75  Aligned_cols=77  Identities=34%  Similarity=0.553  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCC-CccccchHHHHHHHHHHHHhc
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGS-DVSNIGWLPLGSLCVFIIVFS   86 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   86 (87)
                      ...+.+.++++.+++.++.+++||+|||++++.+..++.+++..++........+. ......+..+.++++|...|+
T Consensus       332 ~~~~~~~~~v~~~~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~  409 (513)
T KOG0254|consen  332 FLASIILGVVNFLGTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPNSSKGAGWLAIVFLCLFIFSFA  409 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCCcccchhHHHHHHHHHHHHHHh
Confidence            77888899999999999999999999999999999999999999998765443321 244678888999999888875

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=98.06  E-value=0.00011  Score=48.66  Aligned_cols=50  Identities=38%  Similarity=0.520  Sum_probs=40.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      +........+....++.+++.++.||+|||++++.+...+.++...++..
T Consensus       307 ~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~  356 (479)
T PRK10077        307 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTA  356 (479)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHH
Confidence            34455556677888999999999999999999999998888887776543

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.74  E-value=0.00091  Score=43.57  Aligned_cols=49  Identities=41%  Similarity=0.674  Sum_probs=38.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      +.............++.++++++.||+|||+.+..+...+.+++..+..
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~  368 (481)
T TIGR00879       320 HAFLVSIIVGAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGI  368 (481)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            3445556667778889999999999999999998887777777666653

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.54  E-value=0.0013  Score=46.86  Aligned_cols=46  Identities=15%  Similarity=0.321  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...+.+.++..+++.++++++.||+|||++++.+....+++.++++
T Consensus       598 ~~~~~l~~l~~i~G~il~g~L~Dr~GRr~~l~~~~~lsai~~ll~~  643 (742)
T TIGR01299       598 YFVNFLGTLAVLPGNIVSALLMDKIGRLRMLAGSMVLSCISCFFLS  643 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            3445566788899999999999999999999988888777766655

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.53  E-value=0.0015  Score=44.04  Aligned_cols=41  Identities=20%  Similarity=0.442  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      .....++.+++.++.||+|||++++.+...+.+++.+++..
T Consensus       345 ~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~  385 (502)
T TIGR00887       345 LAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFA  385 (502)
T ss_pred             HHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence            34455677788899999999999998888888777666543

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.51  E-value=0.00081  Score=42.64  Aligned_cols=49  Identities=16%  Similarity=0.335  Sum_probs=37.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      +.-...........++.++.+++.||+|||+.++.+.....++......
T Consensus        31 ~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~   79 (379)
T TIGR00881        31 DLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGF   79 (379)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHH
Confidence            3344555666777888899999999999999999988877777665543

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.50  E-value=0.00094  Score=42.06  Aligned_cols=47  Identities=23%  Similarity=0.279  Sum_probs=35.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +.............+..+..+++.||+|||+.++.+.....+.....
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~   79 (352)
T PF07690_consen   33 QIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLL   79 (352)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHh
Confidence            34455556667788899999999999999999999888888774333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.49  E-value=0.0017  Score=41.20  Aligned_cols=44  Identities=18%  Similarity=0.139  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........++.+..+++.||+|||+.+..+.....+....+
T Consensus       244 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~  287 (377)
T TIGR00890       244 LAVSISSIFNGGGRPFLGALSDKIGRQKTMSIVFGISAVGMAAM  287 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Confidence            44455667788889999999999999999888777666665444

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.48  E-value=0.0016  Score=41.17  Aligned_cols=46  Identities=20%  Similarity=0.255  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ...........+..+..+.+.||+|||+.++.+.....+.......
T Consensus        38 ~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~   83 (365)
T TIGR00900        38 LAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPF   83 (365)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHH
Confidence            3344455667778888899999999999999887766665554443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.48  E-value=0.00084  Score=43.13  Aligned_cols=47  Identities=19%  Similarity=0.200  Sum_probs=34.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +.-...........++.++.+++.||+|||+.++.+.....+.....
T Consensus        48 ~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~   94 (405)
T TIGR00891        48 DAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLAC   94 (405)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            33345555667778888999999999999999988876665554443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.48  E-value=0.00071  Score=44.83  Aligned_cols=44  Identities=23%  Similarity=0.308  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........+++++.+++.||+|||++++.+.....++....
T Consensus        59 ~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~  102 (479)
T PRK10077         59 FCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGS  102 (479)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            44445567778888999999999999999999877766554433

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.47  E-value=0.00067  Score=43.24  Aligned_cols=46  Identities=22%  Similarity=0.243  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ............++.++.+++.||+|||+.++.+.....+.....+
T Consensus        40 ~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~   85 (366)
T TIGR00886        40 GNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAG   85 (366)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            3444556677788889999999999999999988877776655544

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.45  E-value=0.0012  Score=41.93  Aligned_cols=48  Identities=21%  Similarity=0.120  Sum_probs=36.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      +.-...........++.++.+++.||+|||+.+..+.....+.....+
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   77 (399)
T TIGR00893        30 QYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQA   77 (399)
T ss_pred             hHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHH
Confidence            344555566777888899999999999999999888776666655544

>KOG0252|consensus

Probab=97.44  E-value=0.0013  Score=44.71  Aligned_cols=45  Identities=16%  Similarity=0.180  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .......+-...+++..+++-||+|||+.+......+.++..+.+
T Consensus        88 ~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~  132 (538)
T KOG0252|consen   88 LVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSG  132 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhc
Confidence            455566777888999999999999999999999998888877444

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.44  E-value=0.00072  Score=42.33  Aligned_cols=47  Identities=26%  Similarity=0.415  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .............+..++.+++.||+|||+.+..+.....+......
T Consensus        36 ~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~   82 (352)
T cd06174          36 AGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLA   82 (352)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHH
Confidence            33455556677888899999999999999999888877776665544

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.42  E-value=0.00074  Score=45.94  Aligned_cols=47  Identities=17%  Similarity=0.388  Sum_probs=35.5

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~-gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ++............+..++++++.||+ |||+.++.+...+.+....+
T Consensus        46 ~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll   93 (493)
T PRK15462         46 HAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVL   93 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHH
Confidence            444455555677788888999999999 99999988887776665444

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.42  E-value=0.0025  Score=41.57  Aligned_cols=44  Identities=25%  Similarity=0.375  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........++.++.+++.||+|||+.++.+.....+.....
T Consensus        75 ~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~  118 (481)
T TIGR00879        75 LVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILM  118 (481)
T ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            44445667778888899999999999999988877766665554

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.40  E-value=0.0017  Score=43.12  Aligned_cols=47  Identities=19%  Similarity=0.248  Sum_probs=35.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .............+++++.+++.||+|||++++.+.....+....++
T Consensus        65 ~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~  111 (452)
T PRK11273         65 LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMG  111 (452)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHH
Confidence            33444555666778888999999999999999998877776665554

>PRK12382 putative transporter; Provisional

Probab=97.39  E-value=0.00077  Score=43.66  Aligned_cols=40  Identities=18%  Similarity=0.119  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      ...........+.+++.+++.||+|||++++.+.....++
T Consensus        55 ~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (392)
T PRK12382         55 IAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLA   94 (392)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHH
Confidence            3344455666778888999999999999998876654443

>TIGR00895 2A0115 benzoate transport

Probab=97.38  E-value=0.002  Score=41.19  Aligned_cols=45  Identities=22%  Similarity=0.202  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...........++.++.+++.||+|||+.+..+.....+......
T Consensus        56 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~  100 (398)
T TIGR00895        56 FLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCA  100 (398)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence            334445566788888899999999999999988877776655544

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.38  E-value=0.00053  Score=44.45  Aligned_cols=40  Identities=20%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      ...........+.+++.+.+.||+|||++++.+.....++
T Consensus        55 ~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~   94 (399)
T PRK05122         55 LVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALS   94 (399)
T ss_pred             HHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHH
Confidence            3444555667788888999999999999999887655544

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.38  E-value=0.00059  Score=43.23  Aligned_cols=46  Identities=9%  Similarity=0.233  Sum_probs=34.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      -...........++.+..+.+.||+|||+.+..+.....+.....+
T Consensus        41 g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~   86 (377)
T TIGR00890        41 AIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYA   86 (377)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHH
Confidence            3444455667778888899999999999999888776666554443

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.36  E-value=0.0022  Score=41.17  Aligned_cols=47  Identities=13%  Similarity=0.192  Sum_probs=36.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ......+......++.++.+++.||+|||+.+..+.....+....+.
T Consensus        28 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~   74 (377)
T PRK11102         28 VQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACA   74 (377)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHH
Confidence            33444556666778888999999999999999998877777666554

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.36  E-value=0.0012  Score=43.05  Aligned_cols=46  Identities=17%  Similarity=0.157  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ............++.++.+++.||+|||+.+..+.....++....+
T Consensus        56 ~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~  101 (426)
T PRK12307         56 AFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSG  101 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            3445556677788888999999999999999988877766655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.36  E-value=0.00091  Score=43.66  Aligned_cols=46  Identities=15%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ...........++.+..+++.||+|||+++..+.....++....+.
T Consensus        48 ~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~   93 (393)
T PRK09705         48 LLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMREL   93 (393)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            3344445667778888999999999999999999988888776654

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.34  E-value=0.0015  Score=43.32  Aligned_cols=47  Identities=17%  Similarity=0.218  Sum_probs=37.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +.............++.++.+++.||+|||+.++.+.....+.....
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   84 (485)
T TIGR00711        38 QVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLC   84 (485)
T ss_pred             hhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            44455666777888889999999999999999998887776665544

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PF12832 MFS_1_like: MFS_1 like family

Probab=97.33  E-value=0.0011  Score=34.28  Aligned_cols=44  Identities=16%  Similarity=0.311  Sum_probs=34.3

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVI   46 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~   46 (87)
                      |++.. +.-....+...+.+++.++.+.+.||.+||+..+.....
T Consensus        31 Gl~~~-~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~~   74 (77)
T PF12832_consen   31 GLSPS-QIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSLF   74 (77)
T ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHH
Confidence            44554 555667777888999999999999999999987765543

>TIGR00897 2A0118 polyol permease family

Probab=97.32  E-value=0.0013  Score=43.00  Aligned_cols=45  Identities=9%  Similarity=0.342  Sum_probs=34.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      +.-...........++.++.+.+.||+|||+++..+.....++..
T Consensus        49 ~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~   93 (402)
T TIGR00897        49 QSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHA   93 (402)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH
Confidence            333444556677888899999999999999999888777666543

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK09952 shikimate transporter; Provisional

Probab=97.30  E-value=0.0041  Score=41.26  Aligned_cols=37  Identities=32%  Similarity=0.490  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          14 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      ...+....++.++.+++.||+|||+.++.+.....++
T Consensus       293 ~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~  329 (438)
T PRK09952        293 LLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLS  329 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence            3445666777788899999999999888776554443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.30  E-value=0.0013  Score=42.11  Aligned_cols=47  Identities=26%  Similarity=0.307  Sum_probs=35.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .-...........++.++.+++.||+|||+.+..+.....+......
T Consensus        42 ~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~   88 (385)
T TIGR00710        42 VQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLA   88 (385)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHH
Confidence            33444555666778888899999999999999888776666655543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.29  E-value=0.0035  Score=42.22  Aligned_cols=48  Identities=10%  Similarity=0.221  Sum_probs=37.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~-~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      +.-...........++.+.++++.|| +|||+.+..+.....+....++
T Consensus        49 ~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~   97 (475)
T TIGR00924        49 QAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLA   97 (475)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            33444555667788889999999999 8999999999888877766554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00898 2A0119 cation transport protein

Probab=97.29  E-value=0.0051  Score=41.18  Aligned_cols=47  Identities=26%  Similarity=0.399  Sum_probs=36.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ........+....++.+++.++.||+|||+.+..+.....++.+.+.
T Consensus       357 ~~~~~~~~~~~~i~~~~~~~~l~dr~grr~~~~~~~~~~~~~~l~~~  403 (505)
T TIGR00898       357 IYLDLFISGLVELPAKLITLLLIDRLGRRYTMAASLLLAGVALLLLL  403 (505)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            34455566777888889999999999999999988877777765554

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.28  E-value=0.0017  Score=42.54  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........++.++.+.+.||+|||+.++.+.....+.....
T Consensus        59 ~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~  102 (394)
T PRK10213         59 QSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLV  102 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHH
Confidence            33345566677888888999999999999999888777665544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.26  E-value=0.0013  Score=42.62  Aligned_cols=43  Identities=21%  Similarity=0.251  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .........++.++.+++.||+|||+.++.+.....+......
T Consensus        44 ~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~~~   86 (392)
T PRK10473         44 FSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLLCS   86 (392)
T ss_pred             HHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            3344455677788899999999999999988776666654443

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.26  E-value=0.0014  Score=43.32  Aligned_cols=38  Identities=24%  Similarity=0.475  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .....+++++.+++.||+|||+.+..+.....+.....
T Consensus        73 ~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~  110 (432)
T PRK10406         73 FLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVI  110 (432)
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            34445888889999999999999988887776555443

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.26  E-value=0.0036  Score=44.65  Aligned_cols=45  Identities=24%  Similarity=0.315  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ....+..+...++.++.+++.||+|||+.++.+.....+..++.+
T Consensus       206 ~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~a  250 (742)
T TIGR01299       206 MLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSS  250 (742)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            445556677888999999999999999999998766665554443

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=97.24  E-value=0.0016  Score=44.03  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=34.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~-~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ................++++++.|| +|||++++.+.....+....++
T Consensus        52 a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~   99 (489)
T PRK10207         52 AFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTG   99 (489)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHH
Confidence            3333344445566666789999999 9999999999887777665544

>PRK03699 putative transporter; Provisional

Probab=97.24  E-value=0.0039  Score=40.61  Aligned_cols=44  Identities=7%  Similarity=0.209  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........++.++++++.||+|||+.+..+.....+.....
T Consensus        46 ~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~   89 (394)
T PRK03699         46 NTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGL   89 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            33444556677888899999999999999888876665554433

>PRK03545 putative arabinose transporter; Provisional

Probab=97.24  E-value=0.0019  Score=41.96  Aligned_cols=40  Identities=18%  Similarity=0.219  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .......++.+..+.+.||+|||+++..+.....+.....
T Consensus        52 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~   91 (390)
T PRK03545         52 IYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLS   91 (390)
T ss_pred             HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHH
Confidence            3445556677778899999999999998877666665443

>PRK10133 L-fucose transporter; Provisional

Probab=97.23  E-value=0.0049  Score=41.04  Aligned_cols=46  Identities=11%  Similarity=0.114  Sum_probs=36.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .-...........++.+..+.+.||+|||+.+..+.....+.....
T Consensus        63 ~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~  108 (438)
T PRK10133         63 AGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF  108 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            3344455667778888899999999999999999988877776554

>TIGR00898 2A0119 cation transport protein

Probab=97.23  E-value=0.0014  Score=43.85  Aligned_cols=44  Identities=23%  Similarity=0.378  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........++.++.+++.||+|||+.++.+.....++.+..
T Consensus       131 ~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~  174 (505)
T TIGR00898       131 LTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLT  174 (505)
T ss_pred             HHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHH
Confidence            44455566778888889999999999999998877766665444

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.22  E-value=0.002  Score=41.81  Aligned_cols=45  Identities=11%  Similarity=0.096  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...........++.+..+++.||+|||+.+..+.....+.....+
T Consensus        42 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~   86 (382)
T PRK10091         42 HMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFT   86 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHH
Confidence            445556777888899999999999999999998877776655443

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.22  E-value=0.0016  Score=42.87  Aligned_cols=40  Identities=28%  Similarity=0.463  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +......+++++.+.+.||+|||+.++.+.....++....
T Consensus        59 ~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~   98 (413)
T PRK15403         59 LYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAAT   98 (413)
T ss_pred             HHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            3445566778888999999999999988877666655443

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=97.22  E-value=0.0022  Score=41.74  Aligned_cols=39  Identities=15%  Similarity=0.146  Sum_probs=30.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      .-....+......+..+..+++.||+|||+.++.+....
T Consensus        40 ~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~   78 (396)
T TIGR00882        40 TGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGL   78 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence            334555667888889999999999999999887765443

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.21  E-value=0.0016  Score=42.33  Aligned_cols=44  Identities=20%  Similarity=0.299  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT   53 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~   53 (87)
                      -...........++.++.+++.||+|||+.+..+.....+....
T Consensus        53 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~   96 (406)
T PRK11551         53 GWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLA   96 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence            34445556677888889999999999999999887666555443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=97.21  E-value=0.0017  Score=42.07  Aligned_cols=44  Identities=25%  Similarity=0.271  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........++.+..+++.||+|||+.++.+.....+.....
T Consensus        47 ~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~   90 (394)
T PRK11652         47 AVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVA   90 (394)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHH
Confidence            34445556677788888999999999999888876666554443

>PRK10054 putative transporter; Provisional

Probab=97.21  E-value=0.0017  Score=42.48  Aligned_cols=44  Identities=16%  Similarity=0.227  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........+.++..+++.||+|||+.++.+.....+....+
T Consensus        47 ~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~   90 (395)
T PRK10054         47 YAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAI   90 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHH
Confidence            33344456677888889999999999999888877666555444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.18  E-value=0.0023  Score=42.07  Aligned_cols=45  Identities=9%  Similarity=0.149  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...........++++..+++.||+|||+.+..+.....+.....+
T Consensus        47 ~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~~~~   91 (412)
T TIGR02332        47 LAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIASTATM   91 (412)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence            334444556677778888999999999999888777666655544

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.18  E-value=0.007  Score=40.72  Aligned_cols=37  Identities=24%  Similarity=0.435  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      .......+...++.+.++++.||+|||+.++.+....
T Consensus       290 ~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~  326 (490)
T PRK10642        290 LIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVAL  326 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            3344445556777788899999999999887766543

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.18  E-value=0.0049  Score=33.54  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .....++.+...++.||+|||+.+..+.....+....+.
T Consensus         8 ~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~   46 (141)
T TIGR00880         8 ALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFA   46 (141)
T ss_pred             hhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHH
Confidence            345677788888999999999999888776666655443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=97.16  E-value=0.0062  Score=40.25  Aligned_cols=45  Identities=13%  Similarity=0.174  Sum_probs=35.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      -...........++.+..+++.||+|||+.++.+...+.+....+
T Consensus        41 g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~   85 (410)
T TIGR00885        41 ALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLF   85 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            344455567778888889999999999999999988777776554

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.16  E-value=0.0026  Score=41.49  Aligned_cols=41  Identities=24%  Similarity=0.421  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          14 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ........++.++.+.+.||+|||+.++.+.....++....
T Consensus        55 ~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~   95 (406)
T PRK15402         55 TAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAI   95 (406)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            34455667777888899999999999988876666554443

>TIGR00883 2A0106 metabolite-proton symporter

Probab=97.15  E-value=0.011  Score=37.64  Aligned_cols=38  Identities=26%  Similarity=0.482  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA   48 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~   48 (87)
                      ...........++.++..++.||+|||+.+........
T Consensus       259 ~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~  296 (394)
T TIGR00883       259 LVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAA  296 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence            44445567778888889999999999998775544433

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.14  E-value=0.0021  Score=43.22  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          18 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        18 ~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ....++.++.+++.||+|||+++..+...+.++....+.
T Consensus        68 l~~~ig~~~~G~l~Dr~Grr~~l~~~~~l~~i~~~~~a~  106 (490)
T PRK10642         68 LIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGL  106 (490)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHh
Confidence            456678888999999999999999998877777665543

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.14  E-value=0.0024  Score=42.84  Aligned_cols=42  Identities=14%  Similarity=0.056  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .........++.++.+++.||+|||+.+..+.....+.....
T Consensus        77 ~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~  118 (476)
T PLN00028         77 GIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCM  118 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHH
Confidence            334455567788889999999999999888776666655443

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.13  E-value=0.0026  Score=42.39  Aligned_cols=45  Identities=22%  Similarity=0.292  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...........++.++.+++.||+|||++++.+.....+....++
T Consensus        59 ~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~  103 (496)
T PRK03893         59 SLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACG  103 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            344445566778888999999999999999888776666555444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.12  E-value=0.0046  Score=39.43  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...........++.++++++.||+|||+.+..+......+...+
T Consensus       265 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~  308 (366)
T TIGR00886       265 AYASLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLV  308 (366)
T ss_pred             HHHHHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHH
Confidence            34445566677888888899999999987777665555544433

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.10  E-value=0.0069  Score=40.15  Aligned_cols=47  Identities=21%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .-...........++.++++++.||+|||+++..+.....+....+.
T Consensus       293 ~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~  339 (485)
T TIGR00711       293 AGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRA  339 (485)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHh
Confidence            33444556677888889999999999999998888776666655444

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.09  E-value=0.0032  Score=41.27  Aligned_cols=39  Identities=15%  Similarity=0.104  Sum_probs=30.0

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      .-...........+..++.+++.||+|||+.++.+....
T Consensus        48 ~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~   86 (420)
T PRK09528         48 TGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGL   86 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            344555667788888999999999999999887754433

>PRK15075 citrate-proton symporter; Provisional

Probab=97.07  E-value=0.011  Score=39.04  Aligned_cols=40  Identities=30%  Similarity=0.425  Sum_probs=29.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      +.............++.++++++.||+|||+.+..+....
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~  314 (434)
T PRK15075        275 DSLLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLA  314 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            3444555566777888889999999999999887764433

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.07  E-value=0.0027  Score=42.79  Aligned_cols=45  Identities=18%  Similarity=0.254  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...........++.++.+++.||+|||+.+..+.....++....+
T Consensus        60 ~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~  104 (502)
T TIGR00887        60 AVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASG  104 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHH
Confidence            445556677788899999999999999999888776666654443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.06  E-value=0.007  Score=40.42  Aligned_cols=46  Identities=13%  Similarity=0.115  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ...........++.++.+++.||+|||+++..+....++....++.
T Consensus        68 ~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~  113 (467)
T PRK09556         68 MIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGA  113 (467)
T ss_pred             HHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHH
Confidence            3334445666778888999999999999998877766666555553

>PRK03633 putative MFS family transporter protein; Provisional

Probab=97.04  E-value=0.0034  Score=40.68  Aligned_cols=47  Identities=19%  Similarity=0.226  Sum_probs=35.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .-...........++.+..+++.||+|||+.+..+.....+.....+
T Consensus        43 ~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~   89 (381)
T PRK03633         43 VGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLG   89 (381)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555677788889999999999999999888776666554443

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.03  E-value=0.0024  Score=42.23  Aligned_cols=45  Identities=13%  Similarity=0.298  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...........++.+..+++.||+|||+.+..+.....++....+
T Consensus        62 ~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~  106 (434)
T PRK11663         62 LLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFG  106 (434)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHH
Confidence            444455667778888999999999999999888877777665544

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.03  E-value=0.0025  Score=41.70  Aligned_cols=40  Identities=13%  Similarity=0.163  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      .........+..++.+.+.||+|||++++.+.....+...
T Consensus        44 ~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~   83 (393)
T PRK11195         44 QMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCL   83 (393)
T ss_pred             HHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHH
Confidence            3344566677788889999999999999998876655443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.02  E-value=0.0048  Score=41.60  Aligned_cols=48  Identities=19%  Similarity=0.232  Sum_probs=35.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      +..+.............+..+++.||+|||+.++.+.....+.....+
T Consensus        42 ~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~~   89 (495)
T PRK14995         42 ELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAA   89 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            334444555666677778889999999999999998877776655544

>PRK09952 shikimate transporter; Provisional

Probab=97.02  E-value=0.0031  Score=41.83  Aligned_cols=37  Identities=22%  Similarity=0.342  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          18 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        18 ~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ..+.++.++.+++.||+|||+.+..+.....++....
T Consensus        75 ~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~  111 (438)
T PRK09952         75 LFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALI  111 (438)
T ss_pred             HHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            3355677778999999999999998887777665443

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.01  E-value=0.0041  Score=41.50  Aligned_cols=40  Identities=18%  Similarity=0.402  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .......++.++.+++.||+|||+.++.+.....+.....
T Consensus        62 ~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~  101 (455)
T TIGR00892        62 IMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILA  101 (455)
T ss_pred             HHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHH
Confidence            3344556777888999999999999988876666555444

>TIGR00896 CynX cyanate transporter

Probab=96.98  E-value=0.0039  Score=39.87  Aligned_cols=42  Identities=17%  Similarity=0.192  Sum_probs=31.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      .-...........++.+..+++.||+|||+.+..+.....+.
T Consensus        37 ~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~   78 (355)
T TIGR00896        37 AGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAG   78 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHH
Confidence            334455566777888889999999999999988877554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK11043 putative transporter; Provisional

Probab=96.98  E-value=0.0035  Score=40.77  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      ....+......++.++.+++.||+|||+.+..+.....+...
T Consensus        45 ~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~   86 (401)
T PRK11043         45 ASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSL   86 (401)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHH
Confidence            334445566678888999999999999999887765555443

>TIGR00901 2A0125 AmpG-related permease

Probab=96.96  E-value=0.016  Score=37.11  Aligned_cols=38  Identities=18%  Similarity=0.190  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          18 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        18 ~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ....++.++++++.||+|||+.+..+.....+....+.
T Consensus       256 ~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~  293 (356)
T TIGR00901       256 LGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFV  293 (356)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            45678888899999999999998887776666554443

>PRK15075 citrate-proton symporter; Provisional

Probab=96.94  E-value=0.0051  Score=40.65  Aligned_cols=35  Identities=34%  Similarity=0.449  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          21 MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        21 ~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .+++++.+++.||+|||+.++.+.....++....+
T Consensus        70 ~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~l~~  104 (434)
T PRK15075         70 PLGAIVLGAYIDRVGRRKGLIVTLSIMASGTLLIA  104 (434)
T ss_pred             hhHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHH
Confidence            35678889999999999999998887776665554

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.92  E-value=0.018  Score=39.07  Aligned_cols=42  Identities=17%  Similarity=0.237  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ..+..+...+..++++++.||+|||++++++...+.++...+
T Consensus       292 ~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~  333 (462)
T PRK15034        292 AFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALL  333 (462)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHH
Confidence            344456678888899999999999999999888777765443

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=96.88  E-value=0.013  Score=38.07  Aligned_cols=44  Identities=16%  Similarity=0.311  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ..........++.+...++.||+|||+.+..+.....+....+.
T Consensus       244 ~~~~~~~~~i~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  287 (392)
T PRK10473        244 IMALTAGVSMTVSFSTPFALGIFKPRTLMLTSQVLFLAAGITLA  287 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            34455667788888889999999999998888766655554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=96.88  E-value=0.015  Score=39.27  Aligned_cols=43  Identities=26%  Similarity=0.236  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .........++.++.+++.||+|||+.+..+.....+....+.
T Consensus       301 ~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~  343 (495)
T PRK14995        301 MLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLA  343 (495)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            3344566777888889999999999988877766666554443

>KOG0255|consensus

Probab=96.88  E-value=0.0036  Score=42.28  Aligned_cols=45  Identities=24%  Similarity=0.315  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ..+.+.-+...++.++.+++.|++|||+.++.+.....++-+..+
T Consensus       122 ~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a  166 (521)
T KOG0255|consen  122 LGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTA  166 (521)
T ss_pred             HHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHH
Confidence            344445566677778888999999999999999888887764443

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=96.87  E-value=0.0094  Score=38.61  Aligned_cols=40  Identities=30%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +......++.++.+++.||+|||+.++.+.....+....+
T Consensus        62 ~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~  101 (408)
T PRK09874         62 ITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLM  101 (408)
T ss_pred             HHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHH
Confidence            4455667788888999999999999988877666665444

>PRK10504 putative transporter; Provisional

Probab=96.86  E-value=0.0062  Score=40.45  Aligned_cols=41  Identities=20%  Similarity=0.276  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT   53 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~   53 (87)
                      .....+...++.++.+++.||+|||+.++.+.....++...
T Consensus        51 ~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~   91 (471)
T PRK10504         51 IVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLF   91 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHH
Confidence            34445566778888999999999999998876666555443

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.86  E-value=0.015  Score=36.36  Aligned_cols=47  Identities=30%  Similarity=0.475  Sum_probs=36.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhH-HHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRI-LLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~-~l~~~~~~~~~~~~~~~   55 (87)
                      .............++.++..++.||+|||+ .+..+.....++...+.
T Consensus       213 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  260 (352)
T cd06174         213 AGLLLSLFGLGGILGALLGGLLSDRLGRRRLLLLIGLLLAALGLLLLA  260 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence            334555667788888888899999999999 88888777777666554

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=96.86  E-value=1e-05  Score=53.11  Aligned_cols=46  Identities=37%  Similarity=0.738  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...+.+.....+++.+.+.+++||+|||++++.+...+.++...++
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~  334 (451)
T PF00083_consen  289 FLATLILGLVNFLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILG  334 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455666778888888999999999999999999998888887776

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.85  E-value=0.006  Score=38.90  Aligned_cols=35  Identities=26%  Similarity=0.494  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          21 MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        21 ~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .++.++.+++.||+|||+.+..+.....+......
T Consensus        49 ~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~   83 (394)
T TIGR00883        49 PLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIG   83 (394)
T ss_pred             hhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            45678888999999999999988877766654443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.83  E-value=0.021  Score=37.74  Aligned_cols=35  Identities=17%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      ..+......++.++.+++.||+|||+.++......
T Consensus       285 ~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~  319 (432)
T PRK10406        285 MTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLA  319 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence            33444555667778889999999999877665543

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.80  E-value=0.022  Score=38.67  Aligned_cols=35  Identities=17%  Similarity=0.343  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy7928          21 MVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        21 ~~~~~~~~~l~d~-~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ....++++++.|| +|||+.++.+.....+....++
T Consensus        71 ~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~  106 (500)
T PRK09584         71 YGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVA  106 (500)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence            3344578999999 5999999998877776655554

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=96.79  E-value=0.03  Score=36.40  Aligned_cols=45  Identities=18%  Similarity=0.153  Sum_probs=32.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT   53 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~   53 (87)
                      .............++.+..+++.||+|||+.+..+.....+.+..
T Consensus       257 ~~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~  301 (406)
T PRK11551        257 AGLVQIAFNIGGALGSLLIGALMDRLRPRRVVLLIYAGILASLAA  301 (406)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            334455566778888899999999999999888765555554433

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.78  E-value=0.027  Score=36.82  Aligned_cols=39  Identities=10%  Similarity=0.103  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST   51 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~   51 (87)
                      .....+...++.++..++.||+|||+.+..+.....+..
T Consensus       272 ~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~~~~~~~~~~  310 (426)
T PRK12307        272 MTAAAFGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFI  310 (426)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            344566778888899999999999998887766555443

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.78  E-value=0.02  Score=39.36  Aligned_cols=41  Identities=24%  Similarity=0.422  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      .+=.++.+++++.+.||+.||++++.+-..+.+....+...
T Consensus        55 ~LP~~Llsl~aG~laDr~drrrili~~~~~~~~~~~~L~~l   95 (524)
T PF05977_consen   55 TLPILLLSLFAGALADRFDRRRILILSQLLRALVALLLAVL   95 (524)
T ss_pred             HHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHH
Confidence            34445667778899999999999999988777666666554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=96.77  E-value=0.021  Score=36.68  Aligned_cols=38  Identities=21%  Similarity=0.165  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA   48 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~   48 (87)
                      .......+...++.+...++.||+|||+.+..+.....
T Consensus       234 ~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~  271 (377)
T PRK11102        234 YYFALNIVFLFVMTIINSRFVRRVGALNMLRFGLWIQF  271 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            34445566777888889999999999998887765433

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.76  E-value=0.02  Score=38.25  Aligned_cols=37  Identities=11%  Similarity=-0.003  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAV   45 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~   45 (87)
                      .............++.+.++++.||+|||+.......
T Consensus       296 a~~~~~~~~~~~~ig~~~~G~lsDr~g~r~~~~~~~~  332 (467)
T PRK09556        296 AINTFTLFEIGALVGSLLWGWLSDLANGRRALVACIA  332 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHH
Confidence            3344445566788999999999999999987665443

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=96.75  E-value=0.007  Score=39.70  Aligned_cols=39  Identities=21%  Similarity=0.239  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ........++++.+.||+|||+.+..+.....+....+.
T Consensus        56 ~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~   94 (400)
T PRK11646         56 QFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMA   94 (400)
T ss_pred             HHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            344555567888999999999999998887777766554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.75  E-value=0.013  Score=42.88  Aligned_cols=36  Identities=8%  Similarity=0.090  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST   51 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~   51 (87)
                      ..+...+++++++++.||+|||++++.+.....+..
T Consensus        56 ~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~   91 (1146)
T PRK08633         56 FLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLT   91 (1146)
T ss_pred             HHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHH
Confidence            344456777888999999999999988765544443

>PRK03893 putative sialic acid transporter; Provisional

Probab=96.75  E-value=0.019  Score=38.29  Aligned_cols=40  Identities=23%  Similarity=0.197  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      ...........++.+.++++.||+|||+.+..+.....+.
T Consensus       315 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~  354 (496)
T PRK03893        315 NVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLL  354 (496)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            4444556677888899999999999999888766544443

>KOG2615|consensus

Probab=96.74  E-value=0.0057  Score=40.88  Aligned_cols=42  Identities=24%  Similarity=0.320  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ....+++.++..+.+.|++|||+.++.+..+..++.++.+..
T Consensus        77 F~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~S  118 (451)
T KOG2615|consen   77 FSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWALS  118 (451)
T ss_pred             HHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888889999999999999999888887776643

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=96.73  E-value=0.0086  Score=39.12  Aligned_cols=34  Identities=21%  Similarity=0.224  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAV   45 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~   45 (87)
                      ..........++++..+++.||+|||++++....
T Consensus        31 ~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~   64 (368)
T TIGR00903        31 LAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLA   64 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHH
Confidence            3334455667888889999999999998765543

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=96.72  E-value=0.0028  Score=41.91  Aligned_cols=47  Identities=17%  Similarity=0.235  Sum_probs=34.1

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +.............++.++.+++.||+|||+++..+.....++....
T Consensus        62 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~  108 (438)
T TIGR00712        62 ELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLM  108 (438)
T ss_pred             HhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHH
Confidence            33445555667777888889999999999998888766666554443

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00889 2A0110 nucleoside transporter

Probab=96.72  E-value=0.023  Score=37.59  Aligned_cols=45  Identities=16%  Similarity=0.157  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ....+......++.+...++.||+|||+++..+.....+....+.
T Consensus       255 ~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~  299 (418)
T TIGR00889       255 IWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFA  299 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            333444556667778888999999999999998887777655444

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=96.69  E-value=0.034  Score=35.60  Aligned_cols=44  Identities=14%  Similarity=0.269  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ..........++.++..++.||+|||+.+..+.....+....+.
T Consensus       247 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  290 (385)
T TIGR00710       247 LFALNIIAMIFGGFLNGRFIKKWGAKSLLRMGLILFAVSAVLLE  290 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence            34445667788888999999999999988877666665554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.69  E-value=0.028  Score=36.10  Aligned_cols=37  Identities=19%  Similarity=0.157  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      ...........++.+...++.||+|||+.+..+....
T Consensus       278 ~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~  314 (405)
T TIGR00891       278 NIVVFSNIGAIVGGCVFGFLGDWLGRRKAYVCSLLAG  314 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchhhhHHHHHHH
Confidence            3344556777888889999999999999887766544

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.68  E-value=0.011  Score=37.78  Aligned_cols=29  Identities=14%  Similarity=0.062  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVS   43 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~   43 (87)
                      .......+.++..+.+.||+||||.++..
T Consensus        41 ~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~   69 (375)
T TIGR00899        41 GSAIVGIAVSQLLATRSDYQGDRKGLILF   69 (375)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCchHHHHH
Confidence            34455677788888999999998865543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.68  E-value=0.0037  Score=42.46  Aligned_cols=48  Identities=17%  Similarity=0.284  Sum_probs=34.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhh----hhchhHHHHHH-HHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVD----RLGRRILLLVS-AVIMALSTLTMG   55 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d----~~gRr~~l~~~-~~~~~~~~~~~~   55 (87)
                      .......+..+...+.+++.+++.|    |+||||.++.+ .....+++..+.
T Consensus        40 ~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~~~~l~ll~   92 (477)
T TIGR01301        40 WASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALVAFAVILIG   92 (477)
T ss_pred             HHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence            3445555667888889999999999    59999988775 455555555554

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>KOG0253|consensus

Probab=96.66  E-value=0.014  Score=39.25  Aligned_cols=47  Identities=19%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      +.-..+.+...+++.++..+++|++|||+.+-.....++++++.+..
T Consensus       384 YrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~  430 (528)
T KOG0253|consen  384 YRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTT  430 (528)
T ss_pred             HHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Confidence            34556778899999999999999999999998888888888766643

>TIGR00900 2A0121 H+ Antiporter protein

Probab=96.64  E-value=0.033  Score=35.18  Aligned_cols=45  Identities=13%  Similarity=0.218  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...........++.+...++.||.+||+.+..+.....+....+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  295 (365)
T TIGR00900       251 WVLAAFGLGALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVG  295 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence            344455666778888888999999999988877665555554443

>TIGR00899 2A0120 sugar efflux transporter

Probab=96.61  E-value=0.026  Score=36.08  Aligned_cols=34  Identities=21%  Similarity=0.351  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      .....++.+.+.++.||+|||+.+..+.....+.
T Consensus       245 ~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~  278 (375)
T TIGR00899       245 AGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAF  278 (375)
T ss_pred             HHHHHHHHHhHHHHHHHhcchhHHHHHHHHHHHH
Confidence            3445566677889999999999887765544333

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.60  E-value=0.017  Score=37.56  Aligned_cols=46  Identities=17%  Similarity=0.281  Sum_probs=33.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .............++.++..++.||+|||+++..+.....+..+.+
T Consensus       237 ~~~~~~~~~~~~~ig~~~~g~l~~r~~~~~~~~~~~~~~~i~~~~~  282 (382)
T PRK10091        237 MTFIMMLVGLGMVLGNLLSGRLSGRYSPLRIAAVTDFIIVLALLML  282 (382)
T ss_pred             HHHHHHHHHHHHHHHhHHHheeccccCchhHHHHHHHHHHHHHHHH
Confidence            3344455667788888999999999999998888776666554433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.50  E-value=0.039  Score=38.69  Aligned_cols=49  Identities=12%  Similarity=0.171  Sum_probs=38.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      +..+.+......+....++.+.+.|.+|||...+.+.....+..++.+.
T Consensus        79 ~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at  127 (599)
T PF06609_consen   79 NWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT  127 (599)
T ss_pred             cchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc
Confidence            4445666677777888888899999999999999998877777766553

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK03699 putative transporter; Provisional

Probab=96.48  E-value=0.056  Score=35.27  Aligned_cols=39  Identities=23%  Similarity=0.197  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      ..........++.+...++.||++||+.+........+.
T Consensus       246 ~~~~~~~~~~ig~~~~g~l~dr~~~~~~l~~~~~~~~~~  284 (394)
T PRK03699        246 LVSNFWMAYMVGMWIFSFIVRFFDLQRILTVLAGLALVL  284 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Confidence            334445667888899999999999999887766544443

>TIGR00897 2A0118 polyol permease family

Probab=96.47  E-value=0.066  Score=35.06  Aligned_cols=31  Identities=16%  Similarity=-0.069  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLL   41 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~   41 (87)
                      ...........++.+..+++.||+|||+.+.
T Consensus       261 ~~~~~~~~~~~ig~~~~g~l~dr~~~~~~~~  291 (402)
T TIGR00897       261 QIWGTFFFTNIVFNVIFGIVGDKLGWMNTVR  291 (402)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            3344556778888999999999999988764

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=96.46  E-value=0.018  Score=39.36  Aligned_cols=55  Identities=22%  Similarity=0.376  Sum_probs=39.9

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      |++.+ ++....-..+..-.....+++|+.||+ |+|+.+..|...+.+..++++..
T Consensus        57 g~~~~-~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~  112 (498)
T COG3104          57 GFDET-HATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAIS  112 (498)
T ss_pred             CcChH-hhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhcc
Confidence            34444 444344444555666778899999995 99999999999888888777653

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.43  E-value=0.03  Score=36.99  Aligned_cols=46  Identities=15%  Similarity=0.259  Sum_probs=36.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ......+...++.++..++.||+|||+.+..+.....+....+...
T Consensus       265 ~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~  310 (428)
T PF13347_consen  265 FMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFL  310 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHH
Confidence            3345567778888888999999999999999988888877766544

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=96.42  E-value=0.032  Score=37.12  Aligned_cols=39  Identities=0%  Similarity=-0.090  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT   53 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~   53 (87)
                      .......++++.++++.||+|||+.+..+.....+....
T Consensus        84 ~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~  122 (465)
T TIGR00894        84 SHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIV  122 (465)
T ss_pred             HHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence            344567778888899999999999998887666555443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=96.41  E-value=0.046  Score=35.49  Aligned_cols=40  Identities=20%  Similarity=0.105  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .......+......++.||+|+|+.+..+.....+....+
T Consensus       248 ~~~~~~~~~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~  287 (382)
T PRK11128        248 LGVVAEVLIFAFSNRLFRRWSARDLLLLSAICGVVRWGLM  287 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Confidence            4445666666777889999999999888777766665444

>TIGR00895 2A0115 benzoate transport

Probab=96.39  E-value=0.062  Score=34.33  Aligned_cols=35  Identities=20%  Similarity=0.209  Sum_probs=25.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVS   43 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~   43 (87)
                      .........+...++.++..++.||+|||+.....
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  321 (398)
T TIGR00895       287 AATGGALFNFGGVIGSIIFGWLADRLGPRVTALLL  321 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            33445556677888999999999999999554443

>KOG0254|consensus

Probab=96.35  E-value=0.024  Score=38.49  Aligned_cols=46  Identities=26%  Similarity=0.437  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      .......+...++.++.+.+.|++|||+.++.+.....+..++.+.
T Consensus        93 ~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~  138 (513)
T KOG0254|consen   93 LLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIAL  138 (513)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            5556667778889999999999999999998887777666655554

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.34  E-value=0.057  Score=35.25  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA   48 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~   48 (87)
                      ......++.++.+++.||+|||+....+.....
T Consensus       261 ~~~~~i~~~~~~G~l~dr~g~~~~~~~~~~~~~  293 (393)
T PRK15011        261 AAGLEIPTMLIAGYFAKRLGKRFLMRVAAVAGV  293 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            344556677888999999999997776554433

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.28  E-value=0.052  Score=36.78  Aligned_cols=36  Identities=14%  Similarity=0.192  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      .....++.++++++.||+|||+.+..+.....+...
T Consensus       269 ~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l  304 (491)
T PRK11010        269 LLATIVGALYGGILMQRLSLFRALMIFGILQGVSNA  304 (491)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            356778888999999999999987766655554443

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.23  E-value=0.093  Score=34.41  Aligned_cols=41  Identities=22%  Similarity=0.355  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          14 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .+......++.++..++.||+|||+.+..+.....+....+
T Consensus       264 ~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~  304 (437)
T TIGR00792       264 SIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIF  304 (437)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            34456677788888899999999999888876666655444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]

Probab=96.23  E-value=0.093  Score=35.84  Aligned_cols=45  Identities=18%  Similarity=0.388  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .......+..+++.+....+.+|+|||+++.++.....+....+-
T Consensus       276 ~~~~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~  320 (467)
T COG2211         276 LLLLASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLY  320 (467)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHH
Confidence            344445555666678888999999999999999776666655443

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.21  E-value=0.071  Score=35.65  Aligned_cols=53  Identities=23%  Similarity=0.431  Sum_probs=41.2

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      |++.+ +........+...++++.+++++.|| +.|+.+......+.+.+..+..
T Consensus       243 g~s~~-~vs~~Ll~~Gv~~~~Gn~~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~  295 (394)
T COG2814         243 GFSVS-AVSLVLLAFGIAGFIGNLLGGRLADR-GPRRALIAALLLLALALLALTF  295 (394)
T ss_pred             CCCHh-HHHHHHHHHHHHHHHHHHHHhhhccc-cchhHHHHHHHHHHHHHHHHHH
Confidence            44444 45566677888999999999999999 8888888887777777766553

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.19  E-value=0.071  Score=35.02  Aligned_cols=40  Identities=25%  Similarity=0.450  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ......++.+.+.++.||+|||+.+..+.....+....++
T Consensus       271 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~  310 (420)
T PRK09528        271 QVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSG  310 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence            4455667888899999999999998887776666555443

>PRK10504 putative transporter; Provisional

Probab=96.14  E-value=0.081  Score=35.22  Aligned_cols=40  Identities=25%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .........++...+.||+|||+++..+.....+....+.
T Consensus       306 ~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~  345 (471)
T PRK10504        306 MVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFM  345 (471)
T ss_pred             HHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHH
Confidence            3444555556778899999999999888776666655443

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=96.12  E-value=0.04  Score=36.05  Aligned_cols=44  Identities=11%  Similarity=0.116  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      .-...........++.+...++.||.+||+..+.+.....+...
T Consensus       242 ag~~~~~~~i~~i~g~~~~g~l~~r~~~~~~~~~~~~l~~~~~~  285 (393)
T PRK09705        242 SGSLLALMTLGQAAGALLMPAMARHQDRRKLLMLALVLQLVGFC  285 (393)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence            33455566778889999999999999999988887655555443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.11  E-value=0.016  Score=37.95  Aligned_cols=43  Identities=19%  Similarity=0.388  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ......+...+++++.+++.||+|||+.+..+.....+....+
T Consensus        57 ~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~   99 (417)
T PRK10489         57 SVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGL   99 (417)
T ss_pred             HHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHH
Confidence            3344556667788888999999999998887766555554443

>PRK10133 L-fucose transporter; Provisional

Probab=96.11  E-value=0.039  Score=36.84  Aligned_cols=40  Identities=13%  Similarity=0.110  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      ...........++.+.+.++.||+|||+.+..+.......
T Consensus       299 ~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~  338 (438)
T PRK10133        299 NYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMAL  338 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            3445566778888999999999999999887776544433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=96.07  E-value=0.13  Score=33.53  Aligned_cols=40  Identities=13%  Similarity=0.036  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      .....++.+...++.||++||+....+.....+.+..+..
T Consensus       261 ~~~~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~  300 (406)
T PRK15402        261 FGALIAGNLTLARLTSRRPLRSLIRMGLWPMVAGLLLAAL  300 (406)
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677778889999999999888877666555554443

>TIGR01272 gluP glucose/galactose transporter

Probab=96.02  E-value=0.06  Score=34.41  Aligned_cols=43  Identities=16%  Similarity=0.148  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST   51 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~   51 (87)
                      .............++.+.+.++.||+|+|+++..+.....+..
T Consensus       180 a~~~~s~~~~~~~iGr~~~~~l~~r~g~~~~l~~~~~l~~~~~  222 (310)
T TIGR01272       180 AAHFTAYTWGGAMVGRFIGSAVMPMISQGRYLAFNAFLAVLLS  222 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            3344455566778899999999999999998877766555544

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.00  E-value=0.09  Score=34.40  Aligned_cols=34  Identities=26%  Similarity=0.315  Sum_probs=26.0

Q ss_pred             HHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928          19 IMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus        19 ~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      ...++.+++.++.||+|||+.+..+.....+...
T Consensus       258 ~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l  291 (402)
T PRK11902        258 ATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNL  291 (402)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            4677888899999999999988776665555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.95  E-value=0.044  Score=35.56  Aligned_cols=37  Identities=22%  Similarity=0.450  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMAL   49 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~   49 (87)
                      .........++.+...++.||+|||+.+..+.....+
T Consensus       241 ~~~~~~~~~~~~~~~g~l~dr~~~~~~l~~~~~~~~~  277 (381)
T PRK03633        241 MALLVSAGILGQWPIGRLADRFGRLLVLRVQVFVVIL  277 (381)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHcCcHHHHHHHHHHHHH
Confidence            3345566778888889999999999988766544443

>TIGR00896 CynX cyanate transporter

Probab=95.94  E-value=0.058  Score=34.52  Aligned_cols=43  Identities=12%  Similarity=0.160  Sum_probs=29.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALST   51 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~-gRr~~l~~~~~~~~~~~   51 (87)
                      .-.......+...++.+...++.||+ +||+.+..+...+.++.
T Consensus       234 ~g~~~~~~~~~~i~~~~~~g~l~dr~~~~~~~~~~~~~~~~~~~  277 (355)
T TIGR00896       234 AGSLLALMQLAQAASALLIPALARRVKDQRGIVAVLAVLQLVGL  277 (355)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHhhhccchHHHHHHHHHHHHHH
Confidence            33444556677888899999999999 56666656555454443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>PRK09848 glucuronide transporter; Provisional

Probab=95.92  E-value=0.12  Score=34.38  Aligned_cols=37  Identities=16%  Similarity=0.264  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          18 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        18 ~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ...+++.++..++.||+|+|+.+..+.....+....+
T Consensus       275 ~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~  311 (448)
T PRK09848        275 VGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLF  311 (448)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            4456677788889999999999998877666665444

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=95.87  E-value=0.15  Score=33.14  Aligned_cols=42  Identities=19%  Similarity=0.297  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          14 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ........++.+...++.||+|||+.+..+.....+....+.
T Consensus       256 ~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  297 (399)
T PRK05122        256 TLFGVAFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLW  297 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            344556677778888999999999988877666666554443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.85  E-value=0.15  Score=34.77  Aligned_cols=45  Identities=18%  Similarity=0.351  Sum_probs=35.7

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchh--HHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRR--ILLLVSAVIM   47 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr--~~l~~~~~~~   47 (87)
                      |++.. +.....+...+...++.++.+++.||+|.|  ++++.+....
T Consensus       313 g~s~~-~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~  359 (477)
T PF11700_consen  313 GMSTT-QLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILW  359 (477)
T ss_pred             CcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHH
Confidence            55665 666777788899999999999999999998  7776665544

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>PRK03545 putative arabinose transporter; Provisional

Probab=95.83  E-value=0.2  Score=32.61  Aligned_cols=33  Identities=15%  Similarity=0.263  Sum_probs=24.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLV   42 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~   42 (87)
                      .......+....++.+...++.||.+||++...
T Consensus       244 ~~~~~~~~~~~~~g~~~~g~l~dr~~~~~~~~~  276 (390)
T PRK03545        244 TLLLLLFGGAGIIGSVLFSRLGNRHPSGFLLIA  276 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccchhHHHHH
Confidence            344445567788888999999999998875443

>TIGR00889 2A0110 nucleoside transporter

Probab=95.78  E-value=0.066  Score=35.50  Aligned_cols=43  Identities=14%  Similarity=0.098  Sum_probs=30.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhch-hHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGR-RILLLVSAVIMALS   50 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gR-r~~l~~~~~~~~~~   50 (87)
                      +.-...........++++..+.+.||+|| |+.+..+.....+.
T Consensus        39 ~iGl~~a~~~~~~~i~~~~~g~l~dr~g~~r~~~~~~~~~~~~~   82 (418)
T TIGR00889        39 EIGWVYSSTGIAAILMPILVGIIADKWLSAQKVYAVCHFAGALL   82 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            34455566778889999999999999965 66666555444333

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.78  E-value=0.14  Score=33.38  Aligned_cols=41  Identities=20%  Similarity=0.144  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      +......+.......+.||+|+|+++..+.....+....++
T Consensus       248 ~~~~~~i~~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~  288 (382)
T TIGR00902       248 IGVLAEIIIFAFSNKLFQNCSARDLLLISAIACVGRWAIIG  288 (382)
T ss_pred             HHHHHHHHHHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence            34555666667777889999999999988887777766554

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=95.72  E-value=0.12  Score=34.91  Aligned_cols=30  Identities=13%  Similarity=0.141  Sum_probs=23.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchh
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRR   37 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr   37 (87)
                      +......+..+...++.++++++.||++||
T Consensus       289 ~a~~~~~~~~~~~~ig~~~~G~lsDr~~~r  318 (476)
T PLN00028        289 TAGAIAASFGLMNLFARPAGGYLSDVAARR  318 (476)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHh
Confidence            344455566777888999999999999876

>PRK10429 melibiose:sodium symporter; Provisional

Probab=95.72  E-value=0.22  Score=33.51  Aligned_cols=39  Identities=28%  Similarity=0.313  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT   53 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~   53 (87)
                      ...+..+++.++..++.||+|||+.++.+.....+....
T Consensus       274 ~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~  312 (473)
T PRK10429        274 YAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGV  312 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH
Confidence            344667777888889999999999998877655544433

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.70  E-value=0.066  Score=36.45  Aligned_cols=44  Identities=16%  Similarity=0.180  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ...+......+..+..+.+.||+|+|++...+.....+.....+
T Consensus        75 l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~~~~~  118 (462)
T PRK15034         75 LTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPCVWLG  118 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHH
Confidence            33344455556666678899999999999888877766665554

>KOG1330|consensus

Probab=95.66  E-value=0.018  Score=39.18  Aligned_cols=48  Identities=19%  Similarity=0.340  Sum_probs=38.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      +.-..+....+.+.++.++++++.||+.||+++..|...-.++.+.-+
T Consensus        69 ~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~  116 (493)
T KOG1330|consen   69 ELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASG  116 (493)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHH
Confidence            444667777888999999999999999999998888766666554444

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=95.63  E-value=0.16  Score=32.90  Aligned_cols=36  Identities=17%  Similarity=0.299  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      +....++.+...++.||+|||+.+..+.....+...
T Consensus       268 ~l~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~  303 (408)
T PRK09874        268 GVAALLSAPRLGKLGDRIGPEKILITALIFSVLLLI  303 (408)
T ss_pred             HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH
Confidence            344455666677899999999998887765554443

>PRK09669 putative symporter YagG; Provisional

Probab=95.59  E-value=0.26  Score=32.80  Aligned_cols=33  Identities=6%  Similarity=0.094  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMAL   49 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~   49 (87)
                      ....+++.++..++.||+|||+.+..+.....+
T Consensus       274 ~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~  306 (444)
T PRK09669        274 MIAGLFGALLSERLLGKFDRVRAFKWTIVAFVI  306 (444)
T ss_pred             HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHH
Confidence            344556677778899999999998887655443

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=95.56  E-value=0.16  Score=33.21  Aligned_cols=35  Identities=31%  Similarity=0.461  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHhhhh-----chhH-HHHHHHHHHHHHHHHHH
Q psy7928          21 MVTTWIATMIVDRL-----GRRI-LLLVSAVIMALSTLTMG   55 (87)
Q Consensus        21 ~~~~~~~~~l~d~~-----gRr~-~l~~~~~~~~~~~~~~~   55 (87)
                      .+..++.+.++||+     |||| ++..+...+.+++..+.
T Consensus        46 ~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~   86 (402)
T PRK11902         46 YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMA   86 (402)
T ss_pred             HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHH
Confidence            56777888899999     7765 67777777777766554

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.47  E-value=0.2  Score=33.77  Aligned_cols=47  Identities=23%  Similarity=0.306  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ..+........+.=+.++++.||+|+||.++.....+.++..+.+..
T Consensus       258 ~~a~~f~~~g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~  304 (417)
T COG2223         258 LIAFLFPLIGALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLF  304 (417)
T ss_pred             HHHHHHHHHHHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcc
Confidence            33444444455555678899999999999999999888888777644

>PRK11043 putative transporter; Provisional

Probab=95.46  E-value=0.35  Score=31.50  Aligned_cols=37  Identities=19%  Similarity=0.232  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTL   52 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~   52 (87)
                      ......++.+.+.++.||++||+..........++..
T Consensus       247 ~~~~~~~g~~~~~~l~~r~~~~~~~~~~~~~~~~~~~  283 (401)
T PRK11043        247 QTIAFLVGGYGCRAALQKWGGEQLLPWLLVLFAVSVI  283 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            3455667777778899999999876655544444433

>KOG0569|consensus

Probab=95.37  E-value=0.13  Score=35.34  Aligned_cols=40  Identities=30%  Similarity=0.484  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ......++++.+..+.|++|||..++.+......+...+.
T Consensus        69 f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~  108 (485)
T KOG0569|consen   69 FFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMG  108 (485)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence            3455677888888999999999888777766555554444

>PTZ00207 hypothetical protein; Provisional

Probab=95.35  E-value=0.092  Score=36.84  Aligned_cols=35  Identities=26%  Similarity=0.350  Sum_probs=28.7

Q ss_pred             HHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          23 TTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        23 ~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      .++.++++.||+|||++++++.....+.....+..
T Consensus        77 ~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala  111 (591)
T PTZ00207         77 FLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALT  111 (591)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH
Confidence            44567899999999999999998888887766653

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.28  E-value=0.3  Score=31.80  Aligned_cols=38  Identities=21%  Similarity=0.433  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT   53 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~   53 (87)
                      ..+...+......++.||+|||+.+..+.....+....
T Consensus       263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~  300 (396)
T TIGR00882       263 GELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIG  300 (396)
T ss_pred             HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            34556666777789999999999988877766665443

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=95.21  E-value=0.41  Score=31.74  Aligned_cols=38  Identities=21%  Similarity=0.295  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          18 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        18 ~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ....++-+++.++.||+++|+++......+.+...+..
T Consensus       280 ~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~  317 (410)
T TIGR00885       280 VIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSI  317 (410)
T ss_pred             HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence            55678888999999999999988877766666554443

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK12382 putative transporter; Provisional

Probab=95.18  E-value=0.19  Score=32.57  Aligned_cols=40  Identities=18%  Similarity=0.296  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .......++.+...++.||+|||+.+..+.....+....+
T Consensus       257 ~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~  296 (392)
T PRK12382        257 AFGGAFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLL  296 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHH
Confidence            3445566777888899999999998887776666655443

>PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function

Probab=95.06  E-value=0.14  Score=33.81  Aligned_cols=33  Identities=21%  Similarity=0.301  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHH
Q psy7928          18 TIMMVTTWIATMIVDRLGRRILLLVSAVIMALS   50 (87)
Q Consensus        18 ~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~   50 (87)
                      ....+...+.+.+.||+|||+.-+.-+....++
T Consensus        80 ~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~s  112 (354)
T PF05631_consen   80 ASSAIFGTFVGSLADRYGRKKACLLFCILYSLS  112 (354)
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            334455556667899999998666655544444

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=94.97  E-value=0.18  Score=33.82  Aligned_cols=46  Identities=20%  Similarity=0.175  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      +..........++.++-..+.||+.||++++.......++.++-+.
T Consensus        52 ~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al   97 (394)
T COG2814          52 QLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL   97 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH
Confidence            3344456677788888888999999999999988877777665543

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=94.87  E-value=0.29  Score=36.31  Aligned_cols=27  Identities=11%  Similarity=0.138  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLV   42 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~   42 (87)
                      ..+...+.+++++++.||+|||+++..
T Consensus        61 ~~l~~~l~~~~~G~laDr~~rk~~~~~   87 (1140)
T PRK06814         61 FILPFFIFSALAGQLADKYDKAKLAKI   87 (1140)
T ss_pred             HHHHHHHHhhhHHhhhhhccHHHHHHH
Confidence            344456777888999999999997643

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=94.81  E-value=0.0016  Score=42.89  Aligned_cols=44  Identities=25%  Similarity=0.363  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ..........++.++++++.||+|||+.++.+...+.+..++.+
T Consensus        51 ~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~   94 (451)
T PF00083_consen   51 LTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIA   94 (451)
T ss_pred             HHHHHHhhhccccccccccccccccccccccccccccccccccc
Confidence            34445566677788888999999999999988877766655544

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=94.77  E-value=0.49  Score=31.57  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhc-hhHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLG-RRILLLVSAVIMALST   51 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~g-Rr~~l~~~~~~~~~~~   51 (87)
                      ..........++..++.+++.||.+ +|+.+........+.+
T Consensus        41 ~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~   82 (400)
T PF03825_consen   41 ILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALAL   82 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHH
Confidence            4444566778888888899999985 4566655555444443

>TIGR00893 2A0114 d-galactonate transporter

Probab=94.73  E-value=0.35  Score=30.67  Aligned_cols=28  Identities=18%  Similarity=0.204  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRI   38 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~   38 (87)
                      ...........++.+..+++.||++||+
T Consensus       255 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~  282 (399)
T TIGR00893       255 FMASLPGIVGFIGMILGGRLSDLLLRRG  282 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4445556777888999999999999996

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=94.69  E-value=0.16  Score=32.97  Aligned_cols=29  Identities=10%  Similarity=0.117  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928          19 IMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus        19 ~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      ....+.+.+.++.||+|||+.+..+....
T Consensus       256 ~~~~g~~~~g~l~~r~g~~~~l~~~~~~~  284 (390)
T TIGR02718       256 TVLLGCGGGAWLVRRAGLWRTFILGVGLA  284 (390)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44566778889999999999988766544

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11462 putative transporter; Provisional

Probab=94.53  E-value=0.77  Score=30.97  Aligned_cols=33  Identities=6%  Similarity=0.058  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIM   47 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~   47 (87)
                      ...+...++++++.++.||+|||+.+..+....
T Consensus       271 ~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~  303 (460)
T PRK11462        271 TYCVGNLIGSALAKPLTDWKCKVTIFWWTNALL  303 (460)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence            445566778888899999999999877554433

>PRK10489 enterobactin exporter EntS; Provisional

Probab=94.47  E-value=0.64  Score=30.50  Aligned_cols=43  Identities=12%  Similarity=0.006  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ..........++.+...++.||.+||+.+..+.....+.+..+
T Consensus       264 ~~~~~~~g~~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~  306 (417)
T PRK10489        264 LYAAVPLGAALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLF  306 (417)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHH
Confidence            3344556677778888888898777777776666555554443

>TIGR00805 oat sodium-independent organic anion transporter

Probab=94.31  E-value=0.02  Score=40.11  Aligned_cols=48  Identities=15%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHh
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYF   58 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~~   58 (87)
                      ...........+..++..++.||.|||+++..+...+++..++.+.-+
T Consensus        72 ~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alph  119 (633)
T TIGR00805        72 LINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPH  119 (633)
T ss_pred             eeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChH
Confidence            334445666778888889999999999999999988888887776543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>KOG3764|consensus

Probab=94.23  E-value=0.094  Score=35.47  Aligned_cols=43  Identities=19%  Similarity=0.335  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ....++++.+++.+.+.||+|+|.+++.|...+..+.++++..
T Consensus       114 skA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFafg  156 (464)
T KOG3764|consen  114 SKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAFG  156 (464)
T ss_pred             HHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHHc
Confidence            4568899999999999999999999999999999998888753

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=94.02  E-value=0.29  Score=32.32  Aligned_cols=30  Identities=20%  Similarity=0.018  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILL   40 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l   40 (87)
                      ...........++.+.++++.||++||+..
T Consensus       283 ~~~~~~~l~~~~g~l~~g~l~dr~~~r~~~  312 (412)
T TIGR02332       283 LLAAIPQFCTIFGMIWWSRHSDRLKERKHH  312 (412)
T ss_pred             HHhhHHHHHHHHHHHHHHHHhcccCccHHH
Confidence            344555667788888999999999977753

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=93.98  E-value=0.24  Score=33.32  Aligned_cols=39  Identities=15%  Similarity=0.249  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHhh----hhch-hHHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVD----RLGR-RILLLVSAVIMALSTLTM   54 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d----~~gR-r~~l~~~~~~~~~~~~~~   54 (87)
                      ..++-.+..++.+++.|    |+|| |+.++.+...+.+++..+
T Consensus        51 ~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~ll   94 (473)
T PRK10429         51 ARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLL   94 (473)
T ss_pred             HHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHH
Confidence            34445556666788999    5688 556666666666665444

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=93.94  E-value=0.35  Score=30.40  Aligned_cols=43  Identities=28%  Similarity=0.484  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .........++.++..++.||++||+..........+....+.
T Consensus       249 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  291 (352)
T PF07690_consen  249 FSIFGIVGIIGSLLAGRLSDRFGRRRRLLIAILLLILGALGLL  291 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHH
Confidence            3445566666688889999999988877776665555544443

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=93.80  E-value=0.17  Score=33.21  Aligned_cols=42  Identities=24%  Similarity=0.334  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh----hchhH-HHHHHHHHHHHHHHHH
Q psy7928          13 TIIVGTIMMVTTWIATMIVDR----LGRRI-LLLVSAVIMALSTLTM   54 (87)
Q Consensus        13 ~~~~~~~~~~~~~~~~~l~d~----~gRr~-~l~~~~~~~~~~~~~~   54 (87)
                      ..+......+..++.+++.||    +|||| .++.+.....++...+
T Consensus        41 ~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~   87 (437)
T TIGR00792        41 FLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLL   87 (437)
T ss_pred             HHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHH
Confidence            334456667777888899997    67755 5556666565554444

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00901 2A0125 AmpG-related permease

Probab=93.77  E-value=0.77  Score=29.36  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=21.0

Q ss_pred             HHHHHHHhhhh-----chhHHH-HHHHHHHHHHHHHH
Q psy7928          24 TWIATMIVDRL-----GRRILL-LVSAVIMALSTLTM   54 (87)
Q Consensus        24 ~~~~~~l~d~~-----gRr~~l-~~~~~~~~~~~~~~   54 (87)
                      .++.+.++||+     ||||.+ +.+.....+++..+
T Consensus        38 ~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l   74 (356)
T TIGR00901        38 KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLIL   74 (356)
T ss_pred             HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHH
Confidence            67788899997     888864 45555555554444

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=93.66  E-value=0.17  Score=34.28  Aligned_cols=46  Identities=22%  Similarity=0.376  Sum_probs=36.6

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA   48 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~   48 (87)
                      |.+.. +-.......++...+++++.+++.||+|-|+++..+.....
T Consensus       284 gls~~-~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~  329 (438)
T COG2270         284 GLSST-ELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILS  329 (438)
T ss_pred             CccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHH
Confidence            34444 56677778889999999999999999999998888775444

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=93.42  E-value=1.4  Score=29.34  Aligned_cols=29  Identities=7%  Similarity=0.056  Sum_probs=21.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchh
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRR   37 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr   37 (87)
                      .............++.+.++++.||++||
T Consensus       289 ~~~~~~~~~~~~~ig~~~~g~l~dr~~~~  317 (438)
T TIGR00712       289 SSWAYFLYEYAGIPGTLLCGWMSDKVFKG  317 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            33445556677888899999999999643

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=93.35  E-value=0.94  Score=28.53  Aligned_cols=46  Identities=17%  Similarity=0.140  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ......++...+ .+.++.+.|+.|.|..+.+|..........+...
T Consensus        41 ~l~~~~~~G~~~-G~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~   86 (250)
T PF06813_consen   41 TLSTAGDIGSYF-GILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLA   86 (250)
T ss_pred             HHHHHHHHHhhc-cHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444 4667888999999999999998888887766654

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=93.27  E-value=0.65  Score=24.48  Aligned_cols=47  Identities=19%  Similarity=0.097  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      .....+..-.+++.+.+.++.++.++|+.+..+.....+++..++..
T Consensus        31 ~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~~   77 (85)
T PF06779_consen   31 WLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMALT   77 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444455555666666666677777888888888888888777754

Note that many members are hypothetical proteins.

>KOG3762|consensus

Probab=93.04  E-value=0.25  Score=34.67  Aligned_cols=49  Identities=14%  Similarity=0.207  Sum_probs=34.4

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALST   51 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~   51 (87)
                      |++.+ ..-......-.+.+++.++.+++.||+.|||.++.+..+..+..
T Consensus        42 Gl~p~-~~Gtl~g~~P~v~~L~~P~~g~~Adr~r~~r~lllgsl~~~v~a   90 (618)
T KOG3762|consen   42 GLNPA-VVGTLTGTLPLVEFLAAPLWGFLADRYRKRRPLLLGSLLLSVTA   90 (618)
T ss_pred             CCCHH-HhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            44444 34455556678889999999999999988777766665444443

>PRK15011 sugar efflux transporter B; Provisional

Probab=92.95  E-value=0.62  Score=30.45  Aligned_cols=19  Identities=32%  Similarity=0.504  Sum_probs=12.9

Q ss_pred             HHHHHHHHhhhhchhHHHHH
Q psy7928          23 TTWIATMIVDRLGRRILLLV   42 (87)
Q Consensus        23 ~~~~~~~l~d~~gRr~~l~~   42 (87)
                      +.+.+.+ .||.||||.++.
T Consensus        68 ~~~~~~~-~dr~g~r~~~~~   86 (393)
T PRK15011         68 SQFLAGR-SDKRGDRKSLIV   86 (393)
T ss_pred             HHHHHHH-HhcccchhHHHH
Confidence            3444555 899999986543

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=92.88  E-value=0.6  Score=34.55  Aligned_cols=42  Identities=17%  Similarity=0.068  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          14 IIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        14 ~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ....+..+++.++..++.||.+||+++..+..+..++++.+.
T Consensus       276 ~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  317 (1146)
T PRK08633        276 AASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLP  317 (1146)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHH
Confidence            344555677888888999999988888777766666555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=92.81  E-value=2.1  Score=29.15  Aligned_cols=34  Identities=29%  Similarity=0.534  Sum_probs=24.3

Q ss_pred             HHHHHHHHHhhhh-----chhHH-HHHHHHHHHHHHHHHH
Q psy7928          22 VTTWIATMIVDRL-----GRRIL-LLVSAVIMALSTLTMG   55 (87)
Q Consensus        22 ~~~~~~~~l~d~~-----gRr~~-l~~~~~~~~~~~~~~~   55 (87)
                      ...++.+.+.||+     |||+. ++.+.....++...++
T Consensus        60 ~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a   99 (491)
T PRK11010         60 VFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMG   99 (491)
T ss_pred             HHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence            5677888899999     99885 5566666656655554

>KOG0252|consensus

Probab=92.79  E-value=0.04  Score=37.81  Aligned_cols=37  Identities=19%  Similarity=0.402  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          21 MVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        21 ~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      +++..+..+++|+.|||+..+-+...+++.+.+++..
T Consensus       362 vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~  398 (538)
T KOG0252|consen  362 VPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGP  398 (538)
T ss_pred             CCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCC
Confidence            3345556678999999999999999999998888754

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.63  E-value=0.79  Score=31.84  Aligned_cols=42  Identities=12%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      .......+..+.++++.||+|-|+++..+...-.+...+...
T Consensus        70 ~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~f  111 (511)
T TIGR00806        70 VLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLL  111 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHH
Confidence            344556777888999999999999999887766666555543

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=92.54  E-value=2  Score=28.22  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRI   38 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~   38 (87)
                      ......+....++..+...+.||.+||.
T Consensus       256 ~~~~~~~~~~iig~~~~~~l~~r~~~~~  283 (394)
T PRK10213        256 LVLLSFGIASFVGTSLSSFILKRSVKLA  283 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchhH
Confidence            3344455667778888888888854443

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=92.42  E-value=2  Score=27.96  Aligned_cols=28  Identities=7%  Similarity=-0.088  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRI   38 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~   38 (87)
                      ...........+.+++.+.+.||.|||.
T Consensus        43 ~~~s~~~~~~~~~~~~~g~l~d~~~~~~   70 (382)
T TIGR00902        43 LLIGAALIARFAGGLFFAPLIKDANHII   70 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence            3333456667777888888999999854

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=92.22  E-value=2.1  Score=27.80  Aligned_cols=27  Identities=7%  Similarity=-0.150  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchh
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRR   37 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr   37 (87)
                      ...........++.++.+.+.||+|||
T Consensus        43 ~~~~~~~l~~~l~~~~~g~l~dr~g~~   69 (382)
T PRK11128         43 LLLGAGLVARFLGSLLIAPRVKDPSQL   69 (382)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcch
Confidence            344445566677788888999999984

>KOG2504|consensus

Probab=92.09  E-value=0.75  Score=31.80  Aligned_cols=47  Identities=13%  Similarity=0.265  Sum_probs=35.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ..+...+...+.+...++...+.||+|.|+..+.|.......++.-.
T Consensus        83 ~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lss  129 (509)
T KOG2504|consen   83 IAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSS  129 (509)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHH
Confidence            34455555666777778888899999999999999888887765433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=92.08  E-value=2.5  Score=28.24  Aligned_cols=27  Identities=15%  Similarity=0.091  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchh
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRR   37 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr   37 (87)
                      ....+......++.+.++++.||.+||
T Consensus       301 ~~~~~~~~~~~i~~~~~g~l~d~~~~~  327 (465)
T TIGR00894       301 LLSSLPYLFAWLCSIFAGYLADFLKSS  327 (465)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            444455677788888999999988654

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=92.01  E-value=2.6  Score=28.22  Aligned_cols=28  Identities=14%  Similarity=0.163  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh--chhHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRL--GRRIL   39 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~--gRr~~   39 (87)
                      ..........++.++++++.||+  +||+.
T Consensus       294 ~~~~~~~~~~~g~~~~G~l~dr~~~~r~~~  323 (452)
T PRK11273        294 AYFLYEYAGIPGTLLCGWMSDKVFRGNRGA  323 (452)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCcch
Confidence            33445566777888999999999  55543

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=91.97  E-value=1.6  Score=29.64  Aligned_cols=48  Identities=10%  Similarity=0.185  Sum_probs=36.9

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ++.......-..-++..+...++++|+|+|+-++.+...+.+...++.
T Consensus        49 ~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~   96 (422)
T COG0738          49 EASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFW   96 (422)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence            444455555556677778889999999999999999888887776664

>KOG2563|consensus

Probab=91.87  E-value=0.82  Score=31.43  Aligned_cols=49  Identities=18%  Similarity=0.265  Sum_probs=39.3

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ...+.+.+...+.++..+.++|+.||+|=|..++.+....++...+-.+
T Consensus        80 ~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~i  128 (480)
T KOG2563|consen   80 AADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLI  128 (480)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhh
Confidence            3456777778888899999999999999999999988877776555443

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=91.59  E-value=1.8  Score=27.39  Aligned_cols=27  Identities=19%  Similarity=0.099  Sum_probs=19.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhc
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLG   35 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~g   35 (87)
                      .............++.++..++.||..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~g~l~~r~~  280 (379)
T TIGR00881       254 ASWAFTLYELGGLVGTLLAGWLSDKLF  280 (379)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHc
Confidence            334455566777888889999999863

>PRK09669 putative symporter YagG; Provisional

Probab=91.15  E-value=0.33  Score=32.28  Aligned_cols=37  Identities=30%  Similarity=0.279  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHhhh----hchhH-HHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDR----LGRRI-LLLVSAVIMALSTL   52 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~----~gRr~-~l~~~~~~~~~~~~   52 (87)
                      ..++..+..++.+++.||    +|||| .++.+.....++..
T Consensus        54 ~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~   95 (444)
T PRK09669         54 VRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCL   95 (444)
T ss_pred             HHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHH
Confidence            334455566677788998    77754 55566565555543

>PRK09848 glucuronide transporter; Provisional

Probab=90.96  E-value=0.91  Score=30.21  Aligned_cols=39  Identities=15%  Similarity=0.196  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhh----chhHHH-HHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRL----GRRILL-LVSAVIMALS   50 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~----gRr~~l-~~~~~~~~~~   50 (87)
                      ..........+..++.+++.||.    ||||.. ..+.....+.
T Consensus        49 ~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~   92 (448)
T PRK09848         49 MLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF   92 (448)
T ss_pred             HHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence            33445566677788888999996    777754 4444444433

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=90.37  E-value=4.3  Score=27.90  Aligned_cols=38  Identities=21%  Similarity=0.237  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA   48 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~   48 (87)
                      ....+..+++.+..++-+.+.|+-+|||.++......+
T Consensus        74 ~~~sis~l~~all~P~lGa~aD~~~~Rk~~l~~~~~~~  111 (477)
T PF11700_consen   74 YANSISGLLQALLAPFLGAIADYGGRRKRFLLIFTLLG  111 (477)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHH
Confidence            34455666667777777778999988886666554443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=90.29  E-value=1.8  Score=29.43  Aligned_cols=53  Identities=15%  Similarity=0.201  Sum_probs=34.5

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           3 HGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ++++ |......+-.....+.=++-+++.||+|.|++...+.....+-.+.++.
T Consensus        46 LS~~-q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~   98 (417)
T COG2223          46 LSEG-QKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAF   98 (417)
T ss_pred             CCHH-HHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHH
Confidence            3444 3444444444445555555678899999999999888777666555543

>PRK11663 regulatory protein UhpC; Provisional

Probab=90.06  E-value=4.1  Score=27.10  Aligned_cols=25  Identities=16%  Similarity=0.078  Sum_probs=19.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhh
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRL   34 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~   34 (87)
                      ............++.++++++.||+
T Consensus       282 ~~~~~~~~~~~~~g~~~~g~l~dr~  306 (434)
T PRK11663        282 NSAVSMFELGGFIGALVAGWGSDKL  306 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHh
Confidence            3444455677888899999999998

>KOG2532|consensus

Probab=89.80  E-value=3.8  Score=28.15  Aligned_cols=34  Identities=21%  Similarity=0.284  Sum_probs=26.1

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhch
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGR   36 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gR   36 (87)
                      |++.+ +.-..+.+-...+.+..++++.+.||..+
T Consensus       290 ~f~v~-~~G~~salP~l~~~~~k~~~g~lsD~l~~  323 (466)
T KOG2532|consen  290 GFDVR-ETGFLSALPFLAMAIVKFVAGQLSDRLTF  323 (466)
T ss_pred             CCChh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555 55566777788889999999999998865

>PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans

Probab=89.64  E-value=2.8  Score=24.53  Aligned_cols=40  Identities=18%  Similarity=0.284  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMAL   49 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~   49 (87)
                      .....+......+.++++..+++++|.|+.++.+.....+
T Consensus        40 ~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~   79 (156)
T PF05978_consen   40 YYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAI   79 (156)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4455556666778888889999999999999888765553

UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein [].

>KOG2532|consensus

Probab=89.49  E-value=3.4  Score=28.36  Aligned_cols=41  Identities=22%  Similarity=0.216  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ..-.+++++.+.++.||+|-|+++..+....++...+.-..
T Consensus        83 ~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~a  123 (466)
T KOG2532|consen   83 FWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLA  123 (466)
T ss_pred             HHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence            34456677778999999999999999888777776655443

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=89.34  E-value=3.9  Score=26.87  Aligned_cols=34  Identities=15%  Similarity=-0.022  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSA   44 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~   44 (87)
                      .......+...++.+....+.||.++|+....+.
T Consensus       245 ~~~~~~~~g~i~g~~~~~~l~~~~~~~~~~~~g~  278 (393)
T PRK11195        245 YLQAVVAIGIAVGAGAAARLVTLETVLRVLPAGI  278 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHH
Confidence            3344455666777777778888888887766653

>PF13347 MFS_2: MFS/sugar transport protein

Probab=89.20  E-value=0.078  Score=35.05  Aligned_cols=38  Identities=29%  Similarity=0.379  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHhh----hhchhHH-HHHHHHHHHHHHHHHH
Q psy7928          18 TIMMVTTWIATMIVD----RLGRRIL-LLVSAVIMALSTLTMG   55 (87)
Q Consensus        18 ~~~~~~~~~~~~l~d----~~gRr~~-l~~~~~~~~~~~~~~~   55 (87)
                      .+..+..++-+++.|    |+||||. ++.+.....++...+.
T Consensus        48 i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf   90 (428)
T PF13347_consen   48 IWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLF   90 (428)
T ss_pred             HhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhh
Confidence            333444446667889    7997774 4456677777665554

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=88.12  E-value=0.85  Score=30.83  Aligned_cols=33  Identities=18%  Similarity=0.114  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSA   44 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~   44 (87)
                      .-.+.....++.+++.+.+.||.|.||-++...
T Consensus        48 i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i   80 (412)
T PF01306_consen   48 IFSAGSLFALLAQPVYGFISDKLGLKKHLLWFI   80 (412)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHH
Confidence            333455677888888899999999766555433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0255|consensus

Probab=87.96  E-value=4.5  Score=27.56  Aligned_cols=49  Identities=18%  Similarity=0.353  Sum_probs=37.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ........+....+.........|+.|||.....+.....++.+..+..
T Consensus       352 ~~~~~~~~~~~~~p~~~~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~  400 (521)
T KOG0255|consen  352 IYLNFTLSGLVELPAYFRNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWL  400 (521)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555777777788889999999999999998888887776654

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=87.84  E-value=3.6  Score=29.51  Aligned_cols=41  Identities=17%  Similarity=0.352  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHhhh-hchhHHHHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~-~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ......+..++++++.|+ +||++.+..+.....+...++++
T Consensus        32 f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai   73 (654)
T TIGR00926        32 FTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSF   73 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            334445555677888885 79999998888877777766654

>TIGR00788 fbt folate/biopterin transporter

Probab=87.18  E-value=4.7  Score=27.41  Aligned_cols=51  Identities=14%  Similarity=0.111  Sum_probs=35.4

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLT   53 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~   53 (87)
                      |++.. +.-......++...++........+|++.|+++..+.....+....
T Consensus       284 G~s~~-~~G~~~~~~~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~  334 (468)
T TIGR00788       284 PGGPS-FSGMSKVVGNLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLF  334 (468)
T ss_pred             CCCcc-hhhhHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhC
Confidence            34444 3444445566777777777777788999999999888777766533

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=87.11  E-value=7.2  Score=26.26  Aligned_cols=23  Identities=13%  Similarity=0.138  Sum_probs=15.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDR   33 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~   33 (87)
                      ....+.+....++.+.++++.||
T Consensus       280 ~~~~~~~~~~~~~~~~~g~l~d~  302 (455)
T TIGR00892       280 FLLSIIGFVDIFARPSCGLIAGL  302 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcc
Confidence            34444566667777778888886

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=87.07  E-value=8  Score=26.99  Aligned_cols=42  Identities=21%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      ..++-.+++.+....+.+|.++++++..+....++++..++.
T Consensus       262 ~~gvGai~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal  303 (524)
T PF05977_consen  262 AFGVGAILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL  303 (524)
T ss_pred             HHHHHHHHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc
Confidence            445555666666667777888888888887777777666654

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>KOG4686|consensus

Probab=85.69  E-value=4.1  Score=27.13  Aligned_cols=29  Identities=28%  Similarity=0.229  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSA   44 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~   44 (87)
                      ...+..+.+++.+.++||.||+-+...+.
T Consensus       309 vy~Isav~spvfg~i~Dk~G~n~~wv~~a  337 (459)
T KOG4686|consen  309 VYGISAVLSPVFGAISDKYGFNLWWVASA  337 (459)
T ss_pred             hhhhhhhhhhhHHHhHhhhcceehhHHHH
Confidence            34555666777888999999987665544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=85.00  E-value=10  Score=26.13  Aligned_cols=45  Identities=20%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhh--chhHHHHHH-HHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRL--GRRILLLVS-AVIMALSTL   52 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~--gRr~~l~~~-~~~~~~~~~   52 (87)
                      ++.......=...++++++++|+.||+  |||...... ..+..+++.
T Consensus       289 ~a~~a~~lfE~agl~G~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~  336 (448)
T COG2271         289 KANWAISLFEVAGLPGTLLAGWLSDKLFKGRRGPMALIFMLLITASLV  336 (448)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            444555556677899999999999996  677654333 334444433

>PRK11462 putative transporter; Provisional

Probab=84.68  E-value=7.7  Score=26.27  Aligned_cols=35  Identities=14%  Similarity=0.207  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhhh----hchhH-HHHHHHHHHHHHHHHH
Q psy7928          20 MMVTTWIATMIVDR----LGRRI-LLLVSAVIMALSTLTM   54 (87)
Q Consensus        20 ~~~~~~~~~~l~d~----~gRr~-~l~~~~~~~~~~~~~~   54 (87)
                      -.+.-++-++++||    +|||| .++.+.....++...+
T Consensus        58 Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~ll   97 (460)
T PRK11462         58 DAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLA   97 (460)
T ss_pred             HHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHH
Confidence            34555666788896    67765 5555656666665443

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=84.66  E-value=5.7  Score=27.32  Aligned_cols=41  Identities=15%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      ...-=++-++.+.+.||.+.|..+-.+....++..++++..
T Consensus        74 ~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai~nil~Gfs  114 (448)
T COG2271          74 SITYGVSKFVMGVLSDRSNPRYFMAFGLILSAIVNILFGFS  114 (448)
T ss_pred             HHHHHHHHHHhhhhcccCCCceeehHHHHHHHHHHHHHhhh
Confidence            33444555677889999999999999999999988888754

>TIGR00788 fbt folate/biopterin transporter

Probab=84.18  E-value=11  Score=25.69  Aligned_cols=23  Identities=22%  Similarity=0.325  Sum_probs=15.7

Q ss_pred             HHHHHHhhhhc-----hhHHHHHHHHHH
Q psy7928          25 WIATMIVDRLG-----RRILLLVSAVIM   47 (87)
Q Consensus        25 ~~~~~l~d~~g-----Rr~~l~~~~~~~   47 (87)
                      ++.+.+.|+++     ||+.++.+....
T Consensus        78 ~l~g~l~D~~~i~G~rRr~~l~~~~~l~  105 (468)
T TIGR00788        78 PFAGVMSDTFPLFGYTKRWYLVLSGLLG  105 (468)
T ss_pred             HHHHHHHHhcCCCCccchHHHHHHHHHH
Confidence            34677999997     666666665544

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=83.75  E-value=6.3  Score=23.47  Aligned_cols=35  Identities=20%  Similarity=0.245  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHH
Q psy7928          12 CTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVI   46 (87)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~   46 (87)
                      ...........+.+..+.+.||.|||+.+..+...
T Consensus        44 ~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~   78 (338)
T COG0477          44 LLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLL   78 (338)
T ss_pred             HHHHHHHHHHHHhhhhhhccccccchHHHHHHHHH
Confidence            33344455555667788899999999877776654

>PRK10054 putative transporter; Provisional

Probab=83.56  E-value=4  Score=26.86  Aligned_cols=32  Identities=6%  Similarity=0.121  Sum_probs=21.1

Q ss_pred             HHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          23 TTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        23 ~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      .........||.+||+.+..+.....+....+
T Consensus       260 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~  291 (395)
T PRK10054        260 LQYSVGRRLNAANIRPLMTAGTLCFVIGLVGF  291 (395)
T ss_pred             ehhHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence            33445577899999998877765555544333

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=81.22  E-value=15  Score=25.09  Aligned_cols=55  Identities=18%  Similarity=0.180  Sum_probs=38.0

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHH-HhhhhchhHHHHHHHHHHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATM-IVDRLGRRILLLVSAVIMALSTLTMGYY   57 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~d~~gRr~~l~~~~~~~~~~~~~~~~~   57 (87)
                      |++.. ++...+...+.-.+++-...++ +.++.+++++..+++.....++..+...
T Consensus       240 gmsv~-eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a  295 (403)
T PF03209_consen  240 GMSVG-ETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILA  295 (403)
T ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHH
Confidence            44554 5666666676666777766665 4457888888888888888887666544

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG2816|consensus

Probab=80.07  E-value=7.2  Score=26.86  Aligned_cols=38  Identities=24%  Similarity=0.494  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +...++-+..-+.+.|++|||..+.....+..+.-..+
T Consensus        72 ~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~  109 (463)
T KOG2816|consen   72 GLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCL  109 (463)
T ss_pred             HHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHH
Confidence            44555566666778999999999988877666554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	87
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	98.38
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.66
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.53
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.5
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.44
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.35
2xut_A	524	Proton/peptide symporter family protein; transport	97.31
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.28
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.19
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.83
2cfq_A	417	Lactose permease; transport, transport mechanism,	96.64
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	96.27

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=98.38  E-value=3.1e-06  Score=54.68  Aligned_cols=71  Identities=35%  Similarity=0.533  Sum_probs=51.0

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHHHhhcccCCCCccccchHHHHHHHHHHHHh
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGYYFYLKNSGSDVSNIGWLPLGSLCVFIIVF   85 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (87)
                      +....+.+.+....++.+++.+++||+|||+.++.+...+.+++..++.....       ....+..+..++++...+
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~~~~~~~~~~~~  383 (491)
T 4gc0_A          313 IALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT-------QAPGIVALLSMLFYVAAF  383 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT-------TCCHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHHH
Confidence            34456677788899999999999999999999999999888888777654321       123444455555554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.66  E-value=0.00037  Score=44.22  Aligned_cols=47  Identities=11%  Similarity=0.117  Sum_probs=37.7

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      +.-...........++.++.+++.||+|||+.++.+.....+.....
T Consensus        62 ~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~  108 (438)
T 3o7q_A           62 QAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALF  108 (438)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence            33445555667778888999999999999999999998888877666

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.53  E-value=0.00031  Score=45.32  Aligned_cols=39  Identities=21%  Similarity=0.224  Sum_probs=30.9

Q ss_pred             HHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          17 GTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        17 ~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .+...++.++.+++.||+|||+.++.+.....++.+..+
T Consensus        65 ~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a  103 (491)
T 4gc0_A           65 LIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSA  103 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            345677888899999999999999998887777655443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.50  E-value=0.001  Score=42.96  Aligned_cols=47  Identities=17%  Similarity=0.360  Sum_probs=37.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhh-hchhHHHHHHHHHHHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDR-LGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~-~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .-...........++.++++++.|| +|||+.+..+.....+.....+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (491)
T 4aps_A           56 AASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLA  103 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH
Confidence            3345556677788889999999999 8999999998887777766554

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.44  E-value=0.00097  Score=42.37  Aligned_cols=49  Identities=18%  Similarity=0.287  Sum_probs=39.4

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      +.-...........++.++.+++.||+|||+.++.+.....+.....+.
T Consensus        63 ~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~  111 (451)
T 1pw4_A           63 DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF  111 (451)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHh
Confidence            4445556667778888999999999999999999998888877766654

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.35  E-value=0.002  Score=40.83  Aligned_cols=48  Identities=13%  Similarity=0.085  Sum_probs=36.6

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928           8 NPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      +.........+...++.+++.++.||+|||+++..+.....+....+.
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~  343 (438)
T 3o7q_A          296 FAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISA  343 (438)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            344555566777888999999999999999999888877766655443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.31  E-value=0.0029  Score=41.23  Aligned_cols=52  Identities=12%  Similarity=0.021  Sum_probs=39.4

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-chhHHHHHHHHHHHHHHHHHH
Q psy7928           3 HGVLWNPNLCTIIVGTIMMVTTWIATMIVDRL-GRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~-gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .+.. +.-...........++.+.++++.||+ |||+.+..+.....+......
T Consensus        51 ~s~~-~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~  103 (524)
T 2xut_A           51 LRGA-VAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA  103 (524)
T ss_dssp             TTTT-THHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            4443 444555666777888899999999999 999999988877777665554

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.28  E-value=0.00046  Score=44.12  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=34.7

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMA   48 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~   48 (87)
                      |.+.. +.-...........+++++.+++.||+|||+.++.+.....
T Consensus        39 g~s~~-~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~   84 (417)
T 2cfq_A           39 HISKS-DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             CCCTT-TSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred             CCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            33443 44455666678889999999999999999999888766443

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.19  E-value=0.00033  Score=43.75  Aligned_cols=46  Identities=28%  Similarity=0.233  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          10 NLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      -...........++.+..+++.||+|||+.++.+.....+......
T Consensus        38 g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~   83 (375)
T 2gfp_A           38 QSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAV   83 (375)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHH
Confidence            3455556677788888899999999999988888777666655443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.83  E-value=0.0077  Score=38.20  Aligned_cols=42  Identities=14%  Similarity=0.149  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhh--chhHHHHHHHHHHH-HHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRL--GRRILLLVSAVIMA-LSTL   52 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~--gRr~~l~~~~~~~~-~~~~   52 (87)
                      ...........++.++..++.||+  |||+.+..+..... +++.
T Consensus       292 ~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  336 (451)
T 1pw4_A          292 WAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATI  336 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            445556677888889999999999  99998887765554 4433

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=96.64  E-value=0.014  Score=37.21  Aligned_cols=39  Identities=21%  Similarity=0.389  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHH
Q psy7928          16 VGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTM   54 (87)
Q Consensus        16 ~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~   54 (87)
                      ......++.+...++.||+|||+++..+.....+.+..+
T Consensus       268 ~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~  306 (417)
T 2cfq_A          268 GELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGS  306 (417)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHH
Confidence            344566778888999999999999888777666654443

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=96.27  E-value=0.016  Score=37.33  Aligned_cols=46  Identities=15%  Similarity=0.047  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHH-----HHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLL-----VSAVIMALSTLTMGY   56 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~-----~~~~~~~~~~~~~~~   56 (87)
                      ...........++.++..++.||+|||+...     .+.....+++..+..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~  373 (491)
T 4aps_A          323 WFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAI  373 (491)
T ss_dssp             GGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHH
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence            3444556667777888888999999987654     555555555544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	87
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.9
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.75
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	96.22
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	95.77

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=3.9e-05  Score=46.98  Aligned_cols=54  Identities=19%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHHH
Q psy7928           2 GHGVLWNPNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMGY   56 (87)
Q Consensus         2 g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~~   56 (87)
                      |.+.+ +.-...........++.++.+++.||+|||+.+..+.....+.....+.
T Consensus        55 g~s~~-~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~  108 (447)
T d1pw4a_          55 GFSRG-DLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGF  108 (447)
T ss_dssp             TTCSS-CHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccc
Confidence            34444 5556666677778889999999999999999999988877777665543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=2.1e-05  Score=47.11  Aligned_cols=45  Identities=16%  Similarity=0.109  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          11 LCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      ....+......++.++.+++.||+|||+.++.+.....++.....
T Consensus        47 ~i~s~~~l~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~~~~~~~~   91 (417)
T d1pv7a_          47 IIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFF   91 (417)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTTCTHHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHH
Confidence            444456677788889999999999999999888776666555443

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=96.22  E-value=0.022  Score=33.46  Aligned_cols=41  Identities=20%  Similarity=0.394  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHHHHHHhhhhchhHHHHHHHHHHHHHHHHHH
Q psy7928          15 IVGTIMMVTTWIATMIVDRLGRRILLLVSAVIMALSTLTMG   55 (87)
Q Consensus        15 ~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~~~~~~~~~~~   55 (87)
                      .......++.....++.||.|||+.+..+.....++...+.
T Consensus       267 ~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~  307 (417)
T d1pv7a_         267 MGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS  307 (417)
T ss_dssp             HHHHHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhhhhhhhcccccccchhhhHHHHHHhhhccc
Confidence            34556667777788899999999999998887777766554

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=95.77  E-value=0.042  Score=33.01  Aligned_cols=37  Identities=8%  Similarity=-0.027  Sum_probs=26.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhchhHHHHHHHH
Q psy7928           9 PNLCTIIVGTIMMVTTWIATMIVDRLGRRILLLVSAV   45 (87)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~l~d~~gRr~~l~~~~~   45 (87)
                      .............++.++++++.||.+||+.......
T Consensus       287 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  323 (447)
T d1pw4a_         287 SSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVF  323 (447)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred             hhhhhhcchhhhhhhhhhhhhhhhhccccccccccch
Confidence            3445556677788889999999999998765544433