Psyllid ID: psy793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----
Protein Sequence
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Secondary Structure (PSIPRED)
cccccccccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHcccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccEEEcccEEEEccccccccccccccccccccccccccccccccEEEEEcccccccccccEEEEccccccccccccEEEEEEEccHHHHHHHccccccccccccEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEEEEccEEEEEEEEEEcccccHHHHHHHHHHHHccccEcccccEccccccEccEEEcccEEEEccccccccccccccccccEccccccccEccccccEEEcccEEEEccccccccccccccccccEcccccccccccccEEEEcccccccEcccEEEEcccccHHHcccccEEEEEEEcHHHHHHHHccccccccccccEEEEEEEEccccccccccccccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mdksickegnyIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCtgeygkgklgkalhftgsrfhriipqfmiqggditnfngtggesiygpcfedenfKLKVISQYFHRIIpqfmiqggditnfngtggesiygpcfedenfklkhkfegqlslantghpntnnsqffitlapcphldgknvvfGCVRQgfgvarevsyveaendkplvtctitnsgqlslnedwgvaendgsqdvyppfpedwksnpetvqLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYnqsqsktqQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCddillmepNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Flexible Loop (DISEMBL)
mdksickegnyivfLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSyveaendkplvTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSgneyfklnrmhDAQRKYKKAVRYIKWYnqsqsktqqKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Low Complexity Region (SEG)
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Disordered region (IsUnstruct)
****ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVA****************************EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA*******
Disordered Region (DISOPRED)
************VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAR***Y******KP**TCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ*******KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF*****************RMFQ***
Disordered Region (DISEMBL)
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS********FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Disordered Region (DISPRO)
********GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	414	2.2.26 [Sep-21-2011]
Q9CR16	370	Peptidyl-prolyl cis-trans	yes	N/A	0.855	0.956	0.417	2e-82
Q6DGG0	370	Peptidyl-prolyl cis-trans	yes	N/A	0.855	0.956	0.415	5e-81
P26882	370	Peptidyl-prolyl cis-trans	yes	N/A	0.855	0.956	0.407	2e-80
Q08752	370	Peptidyl-prolyl cis-trans	yes	N/A	0.855	0.956	0.407	3e-78
Q9C566	361	Peptidyl-prolyl cis-trans	yes	N/A	0.857	0.983	0.403	5e-70
P0C1I1	364	Peptidyl-prolyl cis-trans	N/A	N/A	0.847	0.964	0.394	1e-67
Q9P3X9	375	41 kDa peptidyl-prolyl ci	N/A	N/A	0.809	0.893	0.383	1e-64
Q5B4E7	372	Peptidyl-prolyl cis-trans	yes	N/A	0.845	0.940	0.369	1e-60
Q4WIF3	377	Peptidyl-prolyl cis-trans	yes	N/A	0.845	0.928	0.368	3e-60
Q2U0E0	371	Peptidyl-prolyl cis-trans	yes	N/A	0.840	0.938	0.367	6e-58

>sp|Q9CR16|PPID_MOUSE Peptidyl-prolyl cis-trans isomerase D OS=Mus musculus GN=Ppid PE=1 SV=3

 Score =  306 bits (785), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 168/402 (41%), Positives = 225/402 (55%), Gaps = 48/402 (11%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  F 
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPF- 73

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                      HRII +FMIQGGD +N 
Sbjct: 74  -------------------------------------------HRIIKKFMIQGGDFSNQ 90

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGGESIYG  FEDENF  KH  EG LS+AN G PNTN SQFFIT  P PHLDGK+VVF
Sbjct: 91  NGTGGESIYGEKFEDENFHYKHDREGLLSMANAG-PNTNGSQFFITTVPTPHLDGKHVVF 149

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW 248
           G V +G GVAR +  VE   +KP   C I   G+L   +DWG+   DGS D +P FPED 
Sbjct: 150 GQVIKGLGVARTLENVEVNGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPED- 208

Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
            ++ +   ++++  +   +KN GN +FK      A +KY K +RY+        K  +  
Sbjct: 209 -ADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYVDSSKAVIEKADRSR 267

Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
            +    + +LN+ A +LK   ++ AI+ C + L M+P+N KAL+R+ +    +  ++Q L
Sbjct: 268 LQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYRKAQGWQGLKEYDQAL 327

Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            D ++A ++ P D+ I  E+  V++ ++   + EK  YA+MF
Sbjct: 328 ADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.
Mus musculus (taxid: 10090)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q6DGG0|PPID_RAT Peptidyl-prolyl cis-trans isomerase D OS=Rattus norvegicus GN=Ppid PE=1 SV=3

 Score =  301 bits (772), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 167/402 (41%), Positives = 224/402 (55%), Gaps = 48/402 (11%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  F 
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPF- 73

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                      HRII +FMIQGGD +N 
Sbjct: 74  -------------------------------------------HRIIKKFMIQGGDFSNQ 90

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGGESIYG  FEDENF  KH  EG LS+AN G PNTN SQFFIT  P PHLDGK+VVF
Sbjct: 91  NGTGGESIYGEKFEDENFHYKHDREGLLSMANAG-PNTNGSQFFITTVPTPHLDGKHVVF 149

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW 248
           G V +G GVAR +  VE   +KP   C I   G+L   ++WG+   DGS D +P FPED 
Sbjct: 150 GQVIKGLGVARMLENVEVNGEKPAKLCVIAECGELKEGDEWGIFPKDGSGDSHPDFPED- 208

Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
            ++ +   ++++  +   +KN GN +FK      A +KY K +RY+        K     
Sbjct: 209 -ADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKVLRYLDSSKAVIEKADVSR 267

Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
            +    + +LN+ A +LK   ++ AI+ C + L M+P+N KAL+R+ +    +  ++Q L
Sbjct: 268 LQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKALYRKAQGWQGLKEYDQAL 327

Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            D ++A ++ P D+ I  E+  V++ ++   + EK  YA+MF
Sbjct: 328 ADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P26882|PPID_BOVIN Peptidyl-prolyl cis-trans isomerase D OS=Bos taurus GN=PPID PE=1 SV=6

 Score =  300 bits (767), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 164/402 (40%), Positives = 226/402 (56%), Gaps = 48/402 (11%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  F 
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF- 73

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                      HRII +FMIQGGD +N 
Sbjct: 74  -------------------------------------------HRIIKKFMIQGGDFSNQ 90

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQFFIT  P PHLDGK+VVF
Sbjct: 91  NGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGS-NTNGSQFFITTVPTPHLDGKHVVF 149

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW 248
           G V +G GVA+ +  VE + +KP   C I   G+L   +DWG+   DGS D +P FPED 
Sbjct: 150 GQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPED- 208

Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
            ++ +   ++++  +   +KN GN +FK      A +KY K +RY++    +        
Sbjct: 209 -ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267

Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
            +    + +LN+ A +LK   ++ A++ C + L ++P+N KAL+RR +    +  ++Q L
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327

Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            D ++A ++ P D+ I  E+  V+++++   + EK  YA+MF
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q08752|PPID_HUMAN Peptidyl-prolyl cis-trans isomerase D OS=Homo sapiens GN=PPID PE=1 SV=3

 Score =  292 bits (747), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 164/402 (40%), Positives = 223/402 (55%), Gaps = 48/402 (11%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  F 
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGHTTGKPLHFKGCPF- 73

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                      HRII +FMIQGGD +N 
Sbjct: 74  -------------------------------------------HRIIKKFMIQGGDFSNQ 90

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQFFIT  P PHLDGK+VVF
Sbjct: 91  NGTGGESIYGEKFEDENFHYKHDREGLLSMANAGR-NTNGSQFFITTVPTPHLDGKHVVF 149

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW 248
           G V +G GVAR +  VE + +KP   C I   G+L   +D G+   DGS D +P FPED 
Sbjct: 150 GQVIKGIGVARILENVEVKGEKPAKLCVIAECGELKEGDDGGIFPKDGSGDSHPDFPED- 208

Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
            ++ +   ++++  +   +KN GN +FK      A +KY + +RY+           +  
Sbjct: 209 -ADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEVLRYVDSSKAVIETADRAK 267

Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
            +    + +LN+ A +LK   ++ AI+ C + L ++P+N KAL+RR +    +  ++Q L
Sbjct: 268 LQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKALYRRAQGWQGLKEYDQAL 327

Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            D ++A  + P D+ I  E+  V+++++   + EK  YA+MF
Sbjct: 328 ADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDKEKAVYAKMF 369

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9C566|CYP40_ARATH Peptidyl-prolyl cis-trans isomerase CYP40 OS=Arabidopsis thaliana GN=CYP40 PE=2 SV=1

 Score =  265 bits (677), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 164/406 (40%), Positives = 217/406 (53%), Gaps = 51/406 (12%)

Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRF 67
           G    F+D+SIG E  GR+VIEL+  +VPKTAENFR LCTGE G G   G  LH+ G+RF
Sbjct: 2   GRSKCFMDISIGGELEGRIVIELYDDVVPKTAENFRLLCTGEKGLGPNTGVPLHYKGNRF 61

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
                                                       HR+I  FMIQGGDI+ 
Sbjct: 62  --------------------------------------------HRVIKGFMIQGGDISA 77

Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
            +GTGGESIYG  F+DENF+LKH+ +G LS+AN+G PNTN SQFFIT     HLDGK+VV
Sbjct: 78  NDGTGGESIYGLKFDDENFELKHERKGMLSMANSG-PNTNGSQFFITTTRTSHLDGKHVV 136

Query: 188 FGCVRQGFGVAREVSYVEAENDK-PLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPE 246
           FG V +G GV R + +V  E    P     I + G++    D G+ +     DVYP +P 
Sbjct: 137 FGRVTKGMGVVRSIEHVSIEEQSCPSQDVVIHDCGEIPEGADDGICDFFKDGDVYPDWPI 196

Query: 247 DWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY--IKWYNQSQSKT 304
           D   +P   +L+   + +  +K  GNE+FK      A RKY+KA+RY  I W  +   + 
Sbjct: 197 DLNESP--AELSWWMETVDFVKAHGNEHFKKQDYKMALRKYRKALRYLDICWEKEGIDEE 254

Query: 305 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 364
                R   +    N AA +LKF   K A+   +  +  E NNVKALFR+G+A +++NN 
Sbjct: 255 TSTALRKTKSQIFTNSAACKLKFGDAKGALLDTEFAMRDEDNNVKALFRQGQAYMALNNV 314

Query: 365 EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
           +   +  E+AL   PND  I KE A V K++    N EK  Y +MF
Sbjct: 315 DAAAESLEKALQFEPNDAGIKKEYAAVMKKIAFRDNEEKKQYRKMF 360

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Involved in promoting the expression of the juvenile phase of vegetative development, and, to a lower extent, in regulating the positioning of floral buds, floral morphogenesis and the expression of HSPs.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P0C1I1|PPID_RHIO9 Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) GN=cyp12 PE=3 SV=1

 Score =  257 bits (656), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 162/411 (39%), Positives = 220/411 (53%), Gaps = 60/411 (14%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  V+ D++IG +  GR+V ELFK IVPKTAENFRALCTGE G+GK GK L + GS    
Sbjct: 3   NPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGS---- 58

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRII  FMIQGGD T  N
Sbjct: 59  ----------------------------------------LFHRIIKNFMIQGGDFTAGN 78

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGGESIYG  FEDENF LKH+    LS+AN G P TN SQFFIT  P PHLDGK+VVFG
Sbjct: 79  GTGGESIYGEKFEDENFVLKHEKPFLLSMANAG-PGTNGSQFFITTVPTPHLDGKHVVFG 137

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGV-AENDGSQDVYPPFPEDW 248
            V +G  V R +  +E  +D+P+    I   G+L+  ED G+ A  DG  DVY  +P+D 
Sbjct: 138 KVLKGKAVVRALENLETVSDRPVEDAVIAKCGELAEGEDDGIRASEDG--DVYEEYPDDH 195

Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYI---KWYNQSQSKTQ 305
           +   E    N +  +   +K+ GN YFK     +A +KY KA+RY+     ++++  K  
Sbjct: 196 EGPKEP---NDVLQIATHLKDIGNTYFKKGDHANAAKKYLKAIRYLNEKPAFDENDPKEL 252

Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL-----LMEPNNV-KALFRRGRAQV 359
           +  F +      LN +   LK   Y   + +   +L      ++P ++ KA FRRG A++
Sbjct: 253 EGKFAAIKIPCYLNRSMCALKLGEYSECVKVTTTVLEYDSKYLKPTDITKAYFRRGSAKM 312

Query: 360 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
           +  +FE  ++D+E+A +  P D  I KE+A  + ++      EK  YA+MF
Sbjct: 313 NTRDFEGAIEDFEKAHEKDPEDAGIKKELANAKAKLAAKKQKEKSAYAKMF 363

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Rhizopus delemar (strain RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880) (taxid: 246409)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9P3X9|PPID_NEUCR 41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=cyp-41 PE=1 SV=1

 Score =  247 bits (630), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/394 (38%), Positives = 204/394 (51%), Gaps = 59/394 (14%)

Query: 6   CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGS 65
            K+    VF D++IG +  GR+V EL+  IVPKTAENFRALCTGE G GKLGK LH+ GS
Sbjct: 7   VKQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGS 66

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
            F                                            HR+I QFMIQGGD 
Sbjct: 67  TF--------------------------------------------HRVIKQFMIQGGDF 82

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
           T  NGTGGESIYG  FEDENF+LKH     LS+AN G P TN SQFF+T  P PHLDGK+
Sbjct: 83  TAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAG-PGTNGSQFFVTTVPTPHLDGKH 141

Query: 186 VVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAEN----DGSQDVY 241
           VVFG V  G  V R++  ++ + DKP     I + G+LS   D  V+ +    D   D Y
Sbjct: 142 VVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS--GDAAVSADTKTADAYGDEY 199

Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK---WYN 298
             FPED  ++ + +  +++  +    K+ GN+ FK   +  A  KY+K +RY+      +
Sbjct: 200 EDFPEDEATDGQPLSASKILKIATDCKDFGNKAFKAGDLPVALDKYQKGLRYLNEDPELD 259

Query: 299 QSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL----LMEPNNVKALFRR 354
              + T+QK   +   +   N A + +K  A+   I   D  L    + + +  KAL+RR
Sbjct: 260 NEPADTKQK-LDALRVSLNSNAALMNMKLSAWDECIRSADGALAVATISDKDRAKALYRR 318

Query: 355 GRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
           G AQV + + +  L   E+A  L P D  I+ E+
Sbjct: 319 GYAQVRIKDEDSALTSLEEAKKLAPEDGAIVNEL 352

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q5B4E7|PPID_EMENI Peptidyl-prolyl cis-trans isomerase D OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cpr6 PE=3 SV=1

 Score =  234 bits (596), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 152/411 (36%), Positives = 205/411 (49%), Gaps = 61/411 (14%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D+ IG+++ GR+  ELF  +VPKTAENFRALCTGE G GK GK LHF GS       
Sbjct: 9   VFFDIQIGQQQTGRIAFELFNDVVPKTAENFRALCTGEKGMGKQGKPLHFKGS------- 61

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHR+I QFMIQGGD T FNGTG
Sbjct: 62  -------------------------------------IFHRVIKQFMIQGGDFTAFNGTG 84

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           GESIYG  F DENF+LKH     LS+AN+G P TN SQFFIT  P PHLDGK+VVFG V 
Sbjct: 85  GESIYGEKFPDENFELKHDRPFLLSMANSG-PGTNGSQFFITTVPTPHLDGKHVVFGEVI 143

Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAEN---DGSQDVYPPFPEDWK 249
            G  V R++  +  + DKP    TI   G+L+  ED+  A+    D + D Y  FP+D +
Sbjct: 144 NGKSVVRKIENMPTQADKPTTDVTIAECGELT-GEDYDNADKQTPDATGDPYEDFPDDHQ 202

Query: 250 SNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS---KTQQ 306
              E +       +   +KN GN  FK   +     KY+K +RY+  + + +    K  +
Sbjct: 203 G--EELSAPVCFKIASELKNFGNTAFKNGNIALGLEKYQKGLRYLNEFPEPEENDPKDLE 260

Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKR-------AINLCDDILLMEPNNVKALFRRGRAQV 359
              +S       N + +  K   +K        A+++ D     + +  K  +RR  A+ 
Sbjct: 261 PQMKSLRFTLHSNSSLLANKLGQFKNGKTWATYALDVADAASAKDADRAKVYYRRAVAES 320

Query: 360 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            +   ++ L+D EQA  L P+D  I  E A V+K ++     EK T  + F
Sbjct: 321 GLKEEDEALKDLEQASTLAPSDAAIAAETARVKKAIKAREAQEKATARKFF 371

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q4WIF3|PPID_ASPFU Peptidyl-prolyl cis-trans isomerase D OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cpr6 PE=3 SV=1

 Score =  232 bits (592), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 153/415 (36%), Positives = 204/415 (49%), Gaps = 65/415 (15%)

Query: 13  VFLDVSIGEEKVGRMVIEL----FKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
           V+ D+ IG +K GR+ +EL    F  +VPKTAENFRALCTGE G GK  K L + GS   
Sbjct: 10  VYFDIQIGSQKAGRIALELVRLPFNDVVPKTAENFRALCTGEKGVGKQRKPLSYKGS--- 66

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                     FHR+I QFMIQGGD TNF
Sbjct: 67  -----------------------------------------IFHRVIKQFMIQGGDFTNF 85

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGGESIYG  F DENF+LKH     LS+AN+G P TN SQFFIT  P PHLDGK+VVF
Sbjct: 86  NGTGGESIYGEKFPDENFELKHDRPFLLSMANSG-PGTNGSQFFITTVPTPHLDGKHVVF 144

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAEN---DGSQDVYPPFP 245
           G V  G  + R++  +  + DKP    TI + G+LS  ED+  A     D + D Y  +P
Sbjct: 145 GEVINGKSIVRKIENMPTQADKPTTDVTIVDCGELS-GEDYENATKQVADATGDPYEDYP 203

Query: 246 EDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY---NQSQS 302
           +D +      Q+     +   +KN GN  FK   +     KY+K +RY+  +   +++  
Sbjct: 204 DDHQGEELNAQV--CFKIASELKNFGNTAFKSGDVALGLDKYQKGLRYLNEFPDPDENDP 261

Query: 303 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFRRG 355
           K  +   +S       N + +  K   YK A N       + D     E +  KA +RR 
Sbjct: 262 KDLEPQMKSLRFTLHSNSSLLANKLGQYKNAQNWATYALEVADAANAKEADRAKAYYRRA 321

Query: 356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            A       ++ L+D ++AL L P D  IL EIA V+K ++     EK    + F
Sbjct: 322 VAYSGQKEEDEALKDLQEALKLAPGDAGILNEIAKVKKAIKDSEAKEKAAARKFF 376

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q2U0E0|PPID_ASPOR Peptidyl-prolyl cis-trans isomerase D OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=cpr6 PE=3 SV=1

 Score =  225 bits (573), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 151/411 (36%), Positives = 204/411 (49%), Gaps = 63/411 (15%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D+ IG EK GR+ +EL   +VPKTAENFRALCTGE G GK GK LHF GS       
Sbjct: 10  VFFDIQIGNEKTGRIALELV--LVPKTAENFRALCTGEKGMGKQGKPLHFKGS------- 60

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHR+I QFMIQGGD T FNGTG
Sbjct: 61  -------------------------------------IFHRVIKQFMIQGGDFTAFNGTG 83

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           GESIYG  F DENF+LKH     LS+AN+G P TN SQFFIT  P PHLDGK+VVFG V 
Sbjct: 84  GESIYGEKFPDENFELKHDKPFLLSMANSG-PGTNGSQFFITTVPTPHLDGKHVVFGEVI 142

Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAEN---DGSQDVYPPFPEDWK 249
            G  V R+V  +  + DKP+   TI   G+L+  +D+  A+    D + D Y  FP+D +
Sbjct: 143 NGKSVVRKVENMNTQADKPVKDVTIVECGELT-GQDYDDADKQTPDATGDPYEDFPDDHQ 201

Query: 250 SNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY---NQSQSKTQQ 306
                 Q+     +   +KN GN  FK   +     KY+K +RY+  +   +++  K   
Sbjct: 202 GEELNAQV--CFKIASELKNFGNAAFKSGNLALGLEKYQKGLRYLHEFPEPDENDPKELD 259

Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKR-------AINLCDDILLMEPNNVKALFRRGRAQV 359
              ++   A   N + +  K   Y         A++  +     + +  KA +RR  A  
Sbjct: 260 GQIKALRFALHSNSSLLANKLAQYGNGRSWATYALDTANAANAKDADKAKAYYRRAVASS 319

Query: 360 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            +   ++ L+D ++A  L P D  I  EIA V+K ++     E+ T  + F
Sbjct: 320 GLKEEDEALKDLQEAEKLAPGDAGITNEIAKVKKAIKDRQAKERATAQKFF 370

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
307207304	376	40 kDa peptidyl-prolyl cis-trans isomera	0.869	0.957	0.453	3e-94
380026192	375	PREDICTED: peptidyl-prolyl cis-trans iso	0.871	0.962	0.454	1e-91
383853610	376	PREDICTED: peptidyl-prolyl cis-trans iso	0.864	0.952	0.445	5e-91
270005014	368	hypothetical protein TcasGA2_TC007008 [T	0.867	0.975	0.428	2e-90
328789580	375	PREDICTED: peptidyl-prolyl cis-trans iso	0.871	0.962	0.452	6e-90
332029313	388	40 kDa peptidyl-prolyl cis-trans isomera	0.850	0.907	0.452	1e-88
350415568	377	PREDICTED: peptidyl-prolyl cis-trans iso	0.864	0.949	0.440	4e-88
340710400	376	PREDICTED: peptidyl-prolyl cis-trans iso	0.876	0.965	0.439	5e-88
307184736	367	40 kDa peptidyl-prolyl cis-trans isomera	0.852	0.961	0.437	9e-88
156555622	366	PREDICTED: peptidyl-prolyl cis-trans iso	0.862	0.975	0.444	1e-86

>gi|307207304|gb|EFN85054.1| 40 kDa peptidyl-prolyl cis-trans isomerase [Harpegnathos saltator]

 Score =  352 bits (902), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 185/408 (45%), Positives = 243/408 (59%), Gaps = 48/408 (11%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
           + N IVFLD+ +G EKVGR+VIELFK IVP+TAENFRALCTGE G G   K LH+ G   
Sbjct: 13  DTNPIVFLDIVVGPEKVGRIVIELFKDIVPRTAENFRALCTGEKGSGSNAKRLHYKGC-- 70

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
                                                      FH+ IPQFMIQGGDI N
Sbjct: 71  ------------------------------------------VFHKSIPQFMIQGGDIVN 88

Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
           FNGT GESIYGP FEDENF+LKH   G LS+ N G PNTN+SQF IT  PC HLDG NVV
Sbjct: 89  FNGTSGESIYGPYFEDENFQLKHTSAGLLSMVNEGKPNTNSSQFIITCVPCLHLDGTNVV 148

Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPED 247
           FG V +G G+  E++ +    D P+    + + G+L  +E WG+ ENDGS+DVY P+PED
Sbjct: 149 FGKVIKGIGIILELNSLPTMKDIPVDEIKVVDCGELRRDESWGIEENDGSEDVYTPWPED 208

Query: 248 WKSNPETVQLNQ--MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--K 303
           W  +    +L+   +E+VI+ IK+SGN YF      DA RKYKKA+RY  W  + +    
Sbjct: 209 WHYSLSVNKLSHKYVEEVIKKIKDSGNYYFSRKNFVDADRKYKKALRYYNWMTKQKDLLD 268

Query: 304 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
           T  +         LLN+AAV+LK + Y+  +  C+++L ++  N KALFRRG+A + MN 
Sbjct: 269 TPDRTLIELKVIILLNLAAVKLKKENYRDVVEHCNEVLELDKANSKALFRRGQAYIGMNE 328

Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
           +E GL + +QAL   PN++ I++EI  V+K +  +L  E+    RMF+
Sbjct: 329 YELGLANLQQALLECPNNKDIVQEINKVKKIINSYLTTERAVCQRMFK 376

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026192|ref|XP_003696840.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Apis florea]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 186/409 (45%), Positives = 247/409 (60%), Gaps = 48/409 (11%)

Query: 6   CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGS 65
           CK+ N IVFLD++I  EKVGR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ GS
Sbjct: 12  CKK-NPIVFLDIAIESEKVGRVVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYKGS 70

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
            F                                            H+++ Q MIQGGDI
Sbjct: 71  TF--------------------------------------------HKVLSQVMIQGGDI 86

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
            NFNGT GESIYG  FEDE+F L H   G LS+ N G+PN+N+SQF IT++   HLD  N
Sbjct: 87  INFNGTSGESIYGIKFEDEHFGLTHSSGGLLSMVNEGYPNSNSSQFIITISATSHLDNTN 146

Query: 186 VVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFP 245
           VVFG V +G GV  EVS ++  ND P+    I + G+L  +++WG+ ENDG++DV+ P+P
Sbjct: 147 VVFGKVLKGMGVVLEVSQIKTVNDIPVEKIYIIDCGELKGDQNWGMEENDGTEDVFTPWP 206

Query: 246 EDWKSNPETVQLN--QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSK 303
           EDW  +    QL+   M +VI+ IK+SGN YF      DA RKYKKA+RY KW  ++   
Sbjct: 207 EDWNYSRHIKQLDYKYMMEVIKKIKDSGNYYFLRKNYVDAGRKYKKALRYYKWMIKTIDI 266

Query: 304 TQQKHF-RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 362
           +       +     LLN+AAV+LK K Y+ A+ LC  +L +E NN KALFRR +A + +N
Sbjct: 267 SDSNELIMNIKVTLLLNLAAVKLKEKDYREALKLCSKVLQLEKNNSKALFRRSQAHMGLN 326

Query: 363 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
            ++ GL D +QAL   PN++ IL EI  V++ M  +L +EK +  RMF+
Sbjct: 327 EYDLGLADLKQALLESPNNKDILLEIDKVKRVMNSYLVIEKASCQRMFK 375

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853610|ref|XP_003702315.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Megachile rotundata]

 Score =  340 bits (873), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 181/406 (44%), Positives = 244/406 (60%), Gaps = 48/406 (11%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N IVFLD++I  EKVGR+VIELFK +VP+T+ENFRALCTGE G G  GK LH+ GS    
Sbjct: 15  NPIVFLDIAIETEKVGRIVIELFKDVVPRTSENFRALCTGEKGIGINGKKLHYKGS---- 70

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FH+++PQFMIQGGDI NF+
Sbjct: 71  ----------------------------------------IFHKVLPQFMIQGGDIINFD 90

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GT GESIYGP FEDENFKL H   G LS+ N G+PN+N+SQF IT++   HLDG NVVFG
Sbjct: 91  GTSGESIYGPQFEDENFKLSHSSGGLLSMVNEGYPNSNSSQFIITISASTHLDGTNVVFG 150

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWK 249
            V +G GV  EVS VE   D P+    I + G+L   ++WG+ E+DG++D + P+PEDW 
Sbjct: 151 KVLKGMGVILEVSQVETIKDTPVEKVHIIDCGELKQGQNWGMEESDGTEDTFTPWPEDWS 210

Query: 250 --SNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQK 307
             ++ + +    +  VI  IK+SGN YF      DA RKYKKA+RY KW  ++       
Sbjct: 211 YCTDHKGLDYKYIIGVIMKIKDSGNHYFLKKHYVDAGRKYKKALRYYKWMMKTVDVPDHS 270

Query: 308 H--FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
                +   A LLN+AAV+LK K Y+  + LC ++L +  NN KALFRR +A + +N ++
Sbjct: 271 DTLIMNTKVAILLNLAAVKLKEKNYRDVLKLCTEVLQLNKNNSKALFRRSQAYMGLNEYD 330

Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
            GL D +QAL   PN++ IL+E+  V+  M+ +L +E+ +  RMF+
Sbjct: 331 LGLADLKQALLESPNNKDILQEMDKVKTVMKKYLAIERASCQRMFK 376

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005014|gb|EFA01462.1| hypothetical protein TcasGA2_TC007008 [Tribolium castaneum]

 Score =  339 bits (869), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 173/404 (42%), Positives = 234/404 (57%), Gaps = 45/404 (11%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
           E N +VFLD+S G  K GR+VIELFK  VPKTAENFRALCTGE G GK GK LHF  +  
Sbjct: 10  EKNPVVFLDISFGPAKAGRVVIELFKDKVPKTAENFRALCTGEKGIGKHGKPLHFKNT-- 67

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
                                                      FHR++P FM+QGGDIT 
Sbjct: 68  ------------------------------------------IFHRVVPLFMVQGGDITT 85

Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
            +GTGGESIYG  F+DENF L H+ EG + +AN G PN+NNSQF+IT  PC HLDG NVV
Sbjct: 86  KDGTGGESIYGDTFDDENFTLLHEEEGMVGMANNG-PNSNNSQFYITTVPCSHLDGTNVV 144

Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPED 247
           FG VR+GF + +E+  V    D PL   +I N G+L     WG+ E DG+ D+YPP+P D
Sbjct: 145 FGIVRKGFNIIKEMGEVPRNGDTPLENISIVNCGELKPGTPWGIEEQDGTDDIYPPWPND 204

Query: 248 WKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQK 307
           W    +  +   +E+ I  IK+SGN++FK     D++RKY KA+RYI WY   +     +
Sbjct: 205 WDLQSDNKREKLIENAINQIKDSGNQFFKQCNYVDSERKYIKALRYIDWYLGLKEDKNIQ 264

Query: 308 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
                   +LLN+AAV+LK   YK  I+LC  ++L EP N KA +RRG+A++++ ++++ 
Sbjct: 265 SIEDLKMNSLLNLAAVRLKRHKYKEVIDLCSQVILKEPKNGKAFYRRGQAKLALKDYDKA 324

Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
           ++D   A+ L PND  I   +   +K+   +L  E+  Y   F+
Sbjct: 325 IKDLNVAITLHPNDNNIQAVLNIAKKKKLSYLKRERQFYGNFFK 368

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789580|ref|XP_003251298.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Apis mellifera]

 Score =  337 bits (865), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 185/409 (45%), Positives = 245/409 (59%), Gaps = 48/409 (11%)

Query: 6   CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGS 65
           CK+ N IVFLD++I  EKVGR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ GS
Sbjct: 12  CKK-NPIVFLDIAIESEKVGRVVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYKGS 70

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
            F                                            H+++ Q MIQGGDI
Sbjct: 71  TF--------------------------------------------HKVLSQVMIQGGDI 86

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
            NFNGT GESIYG  FEDE+F L H   G LS+ N G+PN+N+SQF IT++   HLD  N
Sbjct: 87  INFNGTSGESIYGIKFEDEHFGLTHSSGGLLSMVNEGYPNSNSSQFIITISATSHLDNTN 146

Query: 186 VVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFP 245
           VVFG V +G GV  EVS +   ND P+    I + G+L  +++WG+ ENDG++DV+  +P
Sbjct: 147 VVFGKVLKGMGVVLEVSQIRTVNDIPVEKIYIIDCGELKGDQNWGMEENDGTEDVFTAWP 206

Query: 246 EDWKSNPETVQLN--QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSK 303
           EDW  +    QL+   M +VI+ IK+SGN YF      DA RKYKKA+RY KW  ++   
Sbjct: 207 EDWNYSRHIKQLDYKYMMEVIKKIKDSGNYYFLRKNYVDAGRKYKKALRYYKWMIKTIDV 266

Query: 304 TQ-QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 362
           +   +   +     LLN+AAV+LK K Y+ A+ LC  +L +E NN KALFRR +A + +N
Sbjct: 267 SNCNELMMNIKVTLLLNLAAVKLKEKDYREALKLCSKVLQLEKNNSKALFRRSQAHMGLN 326

Query: 363 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
            +  GL D +QAL   PN++ IL EI  V++ M  +L +EK +  RMF+
Sbjct: 327 EYNLGLADLKQALLESPNNKDILLEIDKVKRVMNSYLVIEKASCQRMFK 375

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029313|gb|EGI69296.1| 40 kDa peptidyl-prolyl cis-trans isomerase [Acromyrmex echinatior]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 186/411 (45%), Positives = 242/411 (58%), Gaps = 59/411 (14%)

Query: 4   SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFT 63
           S+  E N +VFLDV+IG EKVGR+VIELFK++VP+TAENFR LCTGE G G     LH+ 
Sbjct: 11  SLFNEDNPVVFLDVAIGSEKVGRVVIELFKNVVPRTAENFRVLCTGEKGAGLKAPKLHYK 70

Query: 64  GSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGG 123
           G+                                             FH++I QFMIQGG
Sbjct: 71  GT--------------------------------------------IFHKVISQFMIQGG 86

Query: 124 DITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDG 183
           DI NF+GT GESIYG  F DENFKLKH F G LS+ N G PNTN+SQF IT+    HLD 
Sbjct: 87  DIVNFDGTSGESIYGSYFNDENFKLKHNFPGLLSMVNEGKPNTNSSQFIITVQASTHLDN 146

Query: 184 KNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPP 243
            +V+FG + +G G   E+  V  END P+    I + G+L   E+WG+ END S+DVY P
Sbjct: 147 THVIFGRIIKGMGAVLELCKVPTENDIPVDKINIVDCGELKKGENWGLEENDESEDVYTP 206

Query: 244 FPEDWKSNPETVQLNQ--MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
           +PEDW  +    +L    MEDVIR IK+SGN YF      DA RKY+KA+RY  W ++  
Sbjct: 207 WPEDWDYSKHINKLTHKFMEDVIRKIKDSGNSYFAKQNYVDANRKYRKALRYYNWMSKQN 266

Query: 302 SKTQQKHFRSYYTA-------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR 354
           + +      ++YT+        LLN+AAV+LK K Y++ I LC++IL  +  N KALFRR
Sbjct: 267 NMSD-----TFYTSLVDLRLTLLLNLAAVRLKQKEYRKVIGLCNEILETDNTNCKALFRR 321

Query: 355 GRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT 405
            +A  S+N +E  L+D  QA D+ P D  I KEI  V++  + +L LEK+T
Sbjct: 322 AQAYTSLNEYELALKDLHQASDVCP-DTIISKEIKKVKEMGKVYLELEKIT 371

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415568|ref|XP_003490682.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Bombus impatiens]

 Score =  331 bits (849), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 179/406 (44%), Positives = 241/406 (59%), Gaps = 48/406 (11%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N IVFLD++I  EK GR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ GS    
Sbjct: 16  NPIVFLDIAIESEKAGRIVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYKGS---- 71

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FH+++ QFM+QGGDI NFN
Sbjct: 72  ----------------------------------------IFHKVLSQFMVQGGDIINFN 91

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GT GESIYG  FEDENF L H   G LS+ N G+PN+N+SQF IT++   HLD  NVVFG
Sbjct: 92  GTSGESIYGTQFEDENFVLSHSSGGLLSMVNEGYPNSNSSQFIITVSATTHLDNTNVVFG 151

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW- 248
            V +G GV  EVS  +   D P+    I + G+L  N++W + ENDG++DV+ P+PEDW 
Sbjct: 152 KVLKGMGVVLEVSRAKTIQDVPVQKIHIFDCGELKHNQNWELEENDGTEDVFTPWPEDWD 211

Query: 249 -KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQ 305
              N +      + DVI+ IK+SGN YF      DA RKYKKA+RY KW  ++     + 
Sbjct: 212 YSKNIKRQDYKYIMDVIQKIKDSGNYYFLRKNYVDAGRKYKKALRYYKWMMKTVDVPDSS 271

Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
            +   +     LLN+AAV+LK K+++ A+ LC ++L +  NN KALFRR +A + +N ++
Sbjct: 272 NESIVNTKVTLLLNLAAVKLKQKSHREALKLCSEVLQINQNNSKALFRRSQAYMGLNEYD 331

Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
            GL D +QAL   PN++ IL EI  V+K M  +L +E+ +  +MF+
Sbjct: 332 LGLADLQQALLESPNNKDILLEIDKVKKVMNSYLVIERASCQKMFK 377

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710400|ref|XP_003393779.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Bombus terrestris]

 Score =  331 bits (848), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 181/412 (43%), Positives = 245/412 (59%), Gaps = 49/412 (11%)

Query: 4   SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFT 63
           S CK+ N IVFLD++I  EK GR+VIELFK +VP+TAENFRALCTGE G G  GK LH+ 
Sbjct: 10  SNCKK-NPIVFLDIAIESEKAGRIVIELFKDVVPRTAENFRALCTGEKGIGINGKKLHYK 68

Query: 64  GSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGG 123
           GS                                             FH+++ QFM+QGG
Sbjct: 69  GS--------------------------------------------IFHKVLSQFMVQGG 84

Query: 124 DITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDG 183
           DI NFNGT GESIYG  FEDENF L H   G LS+ N G+PN+N+SQF IT++   HLD 
Sbjct: 85  DIINFNGTSGESIYGTQFEDENFVLSHSSGGLLSMVNEGYPNSNSSQFIITVSATTHLDN 144

Query: 184 KNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPP 243
            NVVFG V +G GV  EVS  +   D P+    I + G+L  N++W + ENDG++DV+ P
Sbjct: 145 TNVVFGKVLKGMGVVLEVSRAKTIQDVPVQKIHIFDCGELKHNQNWELEENDGTEDVFTP 204

Query: 244 FPEDW--KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
           +PEDW    N +      + DVI+ IK+SGN YF      DA RKYKKA+RY KW  ++ 
Sbjct: 205 WPEDWDYSKNIKRQDYKYIMDVIQKIKDSGNYYFLRKNYVDAGRKYKKALRYYKWMMKTV 264

Query: 302 S--KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQV 359
               +  +   +     LLN+AAV+LK K+++ A+ LC ++L +  NN KALFRR +A +
Sbjct: 265 DVPDSSNESIVNTKVTLLLNLAAVKLKQKSHREALKLCSEVLQINQNNSKALFRRSQAYM 324

Query: 360 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
            +N ++ GL D +QAL   PN++ IL EI  V++ M  +L +E+ +  +MF+
Sbjct: 325 GLNEYDLGLADLQQALLESPNNKDILLEIDKVKRVMNSYLVIERASCQKMFK 376

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184736|gb|EFN71058.1| 40 kDa peptidyl-prolyl cis-trans isomerase [Camponotus floridanus]

 Score =  330 bits (845), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 179/409 (43%), Positives = 234/409 (57%), Gaps = 56/409 (13%)

Query: 5   ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTG 64
           +  + N +VFLD++IG EKVGR+VIELFK++VP+TAENFRALCTGE G G     LH+ G
Sbjct: 13  LTDKDNPVVFLDIAIGPEKVGRIVIELFKNVVPQTAENFRALCTGEKGTGIKATRLHYKG 72

Query: 65  SRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGD 124
           S F                                            H+II QFMIQGGD
Sbjct: 73  STF--------------------------------------------HKIISQFMIQGGD 88

Query: 125 ITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGK 184
           I NFNGT GESIYGP F DENF LKH   G LS+ N G P+TN+SQF IT+    HLD  
Sbjct: 89  IVNFNGTSGESIYGPYFNDENFTLKHISAGLLSMVNEGQPHTNSSQFIITIQSSRHLDNT 148

Query: 185 NVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPF 244
           NVVFG V +G G+  E+  V+ E D P+   +I + G+L  NE+WG+ ENDGS+DVY P+
Sbjct: 149 NVVFGEVIKGMGIVLEIGKVQTEKDIPVDKISIIDCGELKKNENWGLEENDGSEDVYTPW 208

Query: 245 PEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS-- 302
           PEDW       +L+          +SGN YF      DA RKYKKA+RY  W  Q +   
Sbjct: 209 PEDWDYFLHVEKLS----------DSGNFYFSKKNFVDAGRKYKKALRYYLWMCQQKDMP 258

Query: 303 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 362
            T         +  LLN+AAV LK K Y++ I+ C+++L  +  N KALFRRG+A   +N
Sbjct: 259 DTIYVSLVDLKSVLLLNLAAVYLKRKEYRKVIHFCNEVLETDNTNGKALFRRGQAYSGLN 318

Query: 363 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
            ++ G+ D E+A ++ PND+ I +EI  ++K    +L  EK T  +MF 
Sbjct: 319 EYKLGIVDLERAFEIYPNDKDITREIIRIKKLKNSYLEFEKTTCQKMFH 367

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156555622|ref|XP_001603058.1| PREDICTED: peptidyl-prolyl cis-trans isomerase D-like [Nasonia vitripennis]

 Score =  326 bits (836), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 180/405 (44%), Positives = 241/405 (59%), Gaps = 48/405 (11%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N IVFLDV+I  EK+GR+VIEL+K  VPKT ENFRALCTGE G G+ GK LH+ GS    
Sbjct: 7   NPIVFLDVAIAGEKIGRIVIELYKDKVPKTVENFRALCTGEKGIGRNGKPLHYKGS---- 62

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                   YFH+++P  MIQGGDI NF+
Sbjct: 63  ----------------------------------------YFHKVVPLSMIQGGDIVNFD 82

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           G+ GESIYGP FEDE+ KL H  EG LS+ N G PNTN+SQF ITLAPCP L+  NVVFG
Sbjct: 83  GSSGESIYGPRFEDEDLKLPHNEEGLLSMVNEGKPNTNSSQFVITLAPCPQLNNTNVVFG 142

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWK 249
            V +G G+ +E   +  +NDKP+   +I + G+L+  EDWG+ +NDG +DVY P+PEDW 
Sbjct: 143 KVIKGIGLVKEFKELPLDNDKPIEKVSIFDCGELTNCEDWGMEDNDG-EDVYTPYPEDWN 201

Query: 250 SNPETVQLN--QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ-Q 306
                 +L   ++ D+I+ IKN GN  F   R   A++KY KA+RY  W  +     +  
Sbjct: 202 YAQHIKELTYEKLIDIIKKIKNVGNACFAKKRYSAAEKKYNKALRYYDWMMKMDDIIKND 261

Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
           +         LLN+A  +L    YK  IN CD +L +EPNN KALFRRG+A + +N++E 
Sbjct: 262 EDIAELKKVMLLNLATTKLHQNNYKSCINSCDQVLAVEPNNSKALFRRGQAYIGLNDYEL 321

Query: 367 GLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
            L D ++A +  P+++ ILKEI  V++ M+ +L LE+    RMF+
Sbjct: 322 ALTDLKRANECSPSNKNILKEIDKVKQVMKSYLALEREQCKRMFK 366

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	414
UNIPROTKB|G4MYB7	376	MGG_08104 "Peptidyl-prolyl cis	0.717	0.789	0.379	1.4e-78
ZFIN|ZDB-GENE-040625-34	371	ppid "peptidylprolyl isomerase	0.864	0.964	0.403	1.3e-66
MGI|MGI:1914988	370	Ppid "peptidylprolyl isomerase	0.717	0.802	0.43	8.8e-63
RGD|1303174	370	Ppid "peptidylprolyl isomerase	0.717	0.802	0.426	7.9e-62
UNIPROTKB|P26882	370	PPID "Peptidyl-prolyl cis-tran	0.717	0.802	0.416	3.4e-61
UNIPROTKB|F1RTY6	370	PPID "Uncharacterized protein"	0.717	0.802	0.416	1.5e-60
UNIPROTKB|E2QTC7	372	PPID "Uncharacterized protein"	0.717	0.798	0.420	1.9e-60
UNIPROTKB|Q08752	370	PPID "Peptidyl-prolyl cis-tran	0.717	0.802	0.416	3.5e-59
UNIPROTKB|E1BXG9	370	PPID "Uncharacterized protein"	0.717	0.802	0.396	2.5e-56
TAIR|locus:2044596	361	SQN "SQUINT" [Arabidopsis thal	0.763	0.875	0.412	2.3e-55

UNIPROTKB|G4MYB7 MGG_08104 "Peptidyl-prolyl cis-trans isomerase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 470 (170.5 bits), Expect = 1.4e-78, Sum P(2) = 1.4e-78
 Identities = 118/311 (37%), Positives = 164/311 (52%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHR+I QFMIQGGD T  NGTGGESIYG  F+DENF+L H     LS+AN G P TN SQ
Sbjct:    68 FHRVIKQFMIQGGDFTAGNGTGGESIYGEKFDDENFELIHDRPFLLSMANAG-PGTNGSQ 126

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSLNEDW 229
             FF+T  P PHLD K+VVFG V  G  V R+V  +     DKP+ + TI + G+L  +   
Sbjct:   127 FFVTTVPTPHLDKKHVVFGQVLSGKSVVRQVENLTTHAGDKPVKSATIADCGELPADAVV 186

Query:   230 GVA--ENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKY 287
             G A  E D   D Y  FPED +  P  + + ++  +    K  GN  FK+     A  KY
Sbjct:   187 GDAAKEADKYGDKYEDFPEDDEGGP--LDVARVTTIASDCKTYGNSAFKVGDHATALTKY 244

Query:   288 KKAVRYIKWYNQSQSKTQQKHFRSYYTA---ALLNMAAVQ-LKFKAYKRAINLCDDILLM 343
             +K +RY+    +   +      +    A    L N AA+  LK ++++ A N     L +
Sbjct:   245 QKGLRYLNEEPERDQENIPADVKEKLAALRFTLNNNAALMNLKLESWEDAKNAASSALAV 304

Query:   344 ----EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399
                 + +  KAL+RRG A + + + +  ++D E+A  L P D  + KE+  V+K      
Sbjct:   305 KSASDADRAKALYRRGLAYIRLKDEDAAIKDLEEAKKLAPADAAVAKELEQVKKAAAARA 364

Query:   400 NLEKMTYARMF 410
               EK  Y + F
Sbjct:   365 AKEKAAYKKFF 375

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-040625-34 ppid "peptidylprolyl isomerase D" [Danio rerio (taxid:7955)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 152/377 (40%), Positives = 210/377 (55%)

Query:    37 PKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG--TGGESIYG 94
             P  AEN R     E G  ++G+ +      F  ++P+         NF    TG + +  
Sbjct:    10 PGNAENPRVFFDVEIGAERVGRVVF---ELFADVVPK------TAENFRALCTGEKGVGK 60

Query:    95 PCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEG 154
                +  +FK       FHRII  FMIQGGD +N NGTGGESIYG  FEDENF  KH  EG
Sbjct:    61 STGKPLHFK----GCPFHRIIKSFMIQGGDFSNQNGTGGESIYGDKFEDENFHYKHDREG 116

Query:   155 QLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVT 214
              LS+AN G PNTN SQFFIT  P PHLDGK+VVFG V +G GV + +  +E + D P+  
Sbjct:   117 LLSMANAG-PNTNGSQFFITTVPTPHLDGKHVVFGQVLKGMGVVKMLEAMETKEDNPVKP 175

Query:   215 CTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEY 274
             C I   G+    +DW +A NDGS D YP FPED  S  +   ++++  V   +KN GN +
Sbjct:   176 CVIAECGEHKAGDDWSIALNDGSGDAYPDFPED--SEVDFKDVDKVLSVAEDLKNIGNNF 233

Query:   275 FKLNRMHDAQRKYKKAVRYIKWY-NQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
             FK      A +KY KA+RY++   N     + QK       + +LN AA +LK K ++ A
Sbjct:   234 FKAQNWQSAIKKYSKALRYLEMCGNIVDDDSSQKKLEPTALSCILNTAACKLKLKLWQEA 293

Query:   334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393
             I  CD++L +   N KALFRR +A   +  F + + D ++A ++ P D+ I  E+  V++
Sbjct:   294 IESCDEVLELNQTNTKALFRRAQAWQGLKEFNKAMVDLKKAHEIAPEDKAIGNEMNKVKQ 353

Query:   394 QMRHHLNLEKMTYARMF 410
             Q++     EK  YA+MF
Sbjct:   354 QVKEEKEKEKKIYAKMF 370

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

MGI|MGI:1914988 Ppid "peptidylprolyl isomerase D (cyclophilin D)" [Mus musculus (taxid:10090)]

 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 129/300 (43%), Positives = 183/300 (61%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  KH  EG LS+AN G PNTN SQ
Sbjct:    73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAG-PNTNGSQ 131

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWG 230
             FFIT  P PHLDGK+VVFG V +G GVAR +  VE   +KP   C I   G+L   +DWG
Sbjct:   132 FFITTVPTPHLDGKHVVFGQVIKGLGVARTLENVEVNGEKPAKLCVIAECGELKEGDDWG 191

Query:   231 VAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
             +   DGS D +P FPED  ++ +   ++++  +   +KN GN +FK      A +KY K 
Sbjct:   192 IFPKDGSGDSHPDFPED--ADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKV 249

Query:   291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
             +RY+        K  +   +    + +LN+ A +LK   ++ AI+ C + L M+P+N KA
Sbjct:   250 LRYVDSSKAVIEKADRSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKA 309

Query:   351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
             L+R+ +    +  ++Q L D ++A ++ P D+ I  E+  V++ ++   + EK  YA+MF
Sbjct:   310 LYRKAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0005528 "FK506 binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0006461 "protein complex assembly" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0016853 "isomerase activity" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO

GO:0061077 "chaperone-mediated protein folding" evidence=ISO

GO:0071492 "cellular response to UV-A" evidence=ISO

RGD|1303174 Ppid "peptidylprolyl isomerase D" [Rattus norvegicus (taxid:10116)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 128/300 (42%), Positives = 182/300 (60%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  KH  EG LS+AN G PNTN SQ
Sbjct:    73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAG-PNTNGSQ 131

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWG 230
             FFIT  P PHLDGK+VVFG V +G GVAR +  VE   +KP   C I   G+L   ++WG
Sbjct:   132 FFITTVPTPHLDGKHVVFGQVIKGLGVARMLENVEVNGEKPAKLCVIAECGELKEGDEWG 191

Query:   231 VAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
             +   DGS D +P FPED  ++ +   ++++  +   +KN GN +FK      A +KY K 
Sbjct:   192 IFPKDGSGDSHPDFPED--ADIDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYAKV 249

Query:   291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
             +RY+        K      +    + +LN+ A +LK   ++ AI+ C + L M+P+N KA
Sbjct:   250 LRYLDSSKAVIEKADVSRLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALEMDPSNTKA 309

Query:   351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
             L+R+ +    +  ++Q L D ++A ++ P D+ I  E+  V++ ++   + EK  YA+MF
Sbjct:   310 LYRKAQGWQGLKEYDQALADLKKAQEIAPGDKAIQAELLKVKQMIKAQKDKEKAVYAKMF 369

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISO;IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO;ISS

GO:0005654 "nucleoplasm" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006457 "protein folding" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISO;ISS

GO:0006915 "apoptotic process" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0008134 "transcription factor binding" evidence=ISO;ISS

GO:0015031 "protein transport" evidence=IEA

GO:0019899 "enzyme binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0034389 "lipid particle organization" evidence=ISO;ISS

GO:0042277 "peptide binding" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0050714 "positive regulation of protein secretion" evidence=ISO

GO:0051879 "Hsp90 protein binding" evidence=ISO;ISS

GO:0051881 "regulation of mitochondrial membrane potential" evidence=IMP

GO:0061077 "chaperone-mediated protein folding" evidence=ISO;ISS

GO:0071492 "cellular response to UV-A" evidence=ISO;ISS

UNIPROTKB|P26882 PPID "Peptidyl-prolyl cis-trans isomerase D" [Bos taurus (taxid:9913)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 125/300 (41%), Positives = 184/300 (61%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQ
Sbjct:    73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGS-NTNGSQ 131

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWG 230
             FFIT  P PHLDGK+VVFG V +G GVA+ +  VE + +KP   C I   G+L   +DWG
Sbjct:   132 FFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWG 191

Query:   231 VAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
             +   DGS D +P FPED  ++ +   ++++  +   +KN GN +FK      A +KY K 
Sbjct:   192 IFPKDGSGDSHPDFPED--ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKV 249

Query:   291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
             +RY++    +         +    + +LN+ A +LK   ++ A++ C + L ++P+N KA
Sbjct:   250 LRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
             L+RR +    +  ++Q L D ++A ++ P D+ I  E+  V+++++   + EK  YA+MF
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0034389 "lipid particle organization" evidence=ISS

GO:0071492 "cellular response to UV-A" evidence=ISS

GO:0043065 "positive regulation of apoptotic process" evidence=ISS

GO:0006461 "protein complex assembly" evidence=ISS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051879 "Hsp90 protein binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005730 "nucleolus" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0061077 "chaperone-mediated protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0006457 "protein folding" evidence=IDA

GO:0030544 "Hsp70 protein binding" evidence=IDA

GO:0030331 "estrogen receptor binding" evidence=IDA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0042277 "peptide binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

UNIPROTKB|F1RTY6 PPID "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 125/300 (41%), Positives = 183/300 (61%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQ
Sbjct:    73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGC-NTNGSQ 131

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWG 230
             FFIT  P PHLDGK+VVFG V +G GVAR +  VE + +KP   C I   G+L   +DWG
Sbjct:   132 FFITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPAKLCVIAECGELKEGDDWG 191

Query:   231 VAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
             +   DGS D +P FPED  ++ +   ++++  +   +KN GN +FK  +   A +KY K 
Sbjct:   192 IFPKDGSGDSHPDFPED--ADIDLKDIDKILLITEDLKNIGNTFFKSQKWEMAIKKYTKV 249

Query:   291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
             +RY+        +      +    + +LN+ A +LK   ++ A++ C + L ++P+N KA
Sbjct:   250 LRYVDGAKAVSEEADGLKLQPVALSCMLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKA 309

Query:   351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
             L+RR +    +  ++Q L   ++A ++ P D+ I  E+  V+++++   + EK  YA+MF
Sbjct:   310 LYRRAQGWQGLKEYDQALAALKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|E2QTC7 PPID "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 127/302 (42%), Positives = 185/302 (61%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQ
Sbjct:    73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFYYKHDQEGLLSMANAGC-NTNGSQ 131

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWG 230
             FFIT  P PHLDGK+VVFG V +G GVAR +  VE + +KP   C I   G+L   +DWG
Sbjct:   132 FFITTVPTPHLDGKHVVFGQVIKGMGVARILENVEVKGEKPTKLCVIAECGELKEGDDWG 191

Query:   231 VAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
             +   DGS D +P FPED  ++ +   +N++  +   +KN GN +FK      A +KY K 
Sbjct:   192 IFPKDGSGDNHPDFPED--ADIDLKDVNKILLITEDLKNIGNTFFKSQNWEMAIKKYTKV 249

Query:   291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
             +RY++       +  +   +    + +LN+ A +LK   ++ A++ C + L ++P+N KA
Sbjct:   250 LRYVESSKAVAEQADRLKLQPMALSCVLNIGACKLKMSNWQGAVDSCLEALEIDPSNTKA 309

Query:   351 LFRRGRAQVSMNNFEQGL--QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR 408
             L+RR +    +  ++Q L   D ++A ++ P D+ I  E+  V+++++   + EK  YA+
Sbjct:   310 LYRRAQGWQGLKEYDQALLKADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAK 369

Query:   409 MF 410
             MF
Sbjct:   370 MF 371

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

UNIPROTKB|Q08752 PPID "Peptidyl-prolyl cis-trans isomerase D" [Homo sapiens (taxid:9606)]

 Score = 607 (218.7 bits), Expect = 3.5e-59, P = 3.5e-59
 Identities = 125/300 (41%), Positives = 181/300 (60%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQ
Sbjct:    73 FHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGR-NTNGSQ 131

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWG 230
             FFIT  P PHLDGK+VVFG V +G GVAR +  VE + +KP   C I   G+L   +D G
Sbjct:   132 FFITTVPTPHLDGKHVVFGQVIKGIGVARILENVEVKGEKPAKLCVIAECGELKEGDDGG 191

Query:   231 VAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
             +   DGS D +P FPED  ++ +   ++++  +   +KN GN +FK      A +KY + 
Sbjct:   192 IFPKDGSGDSHPDFPED--ADIDLKDVDKILLITEDLKNIGNTFFKSQNWEMAIKKYAEV 249

Query:   291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
             +RY+           +   +    + +LN+ A +LK   ++ AI+ C + L ++P+N KA
Sbjct:   250 LRYVDSSKAVIETADRAKLQPIALSCVLNIGACKLKMSNWQGAIDSCLEALELDPSNTKA 309

Query:   351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
             L+RR +    +  ++Q L D ++A  + P D+ I  E+  V+++++   + EK  YA+MF
Sbjct:   310 LYRRAQGWQGLKEYDQALADLKKAQGIAPEDKAIQAELLKVKQKIKAQKDKEKAVYAKMF 369

GO:0006915 "apoptotic process" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005654 "nucleoplasm" evidence=IEA

GO:0016018 "cyclosporin A binding" evidence=TAS

GO:0031072 "heat shock protein binding" evidence=IPI

GO:0030331 "estrogen receptor binding" evidence=ISS

GO:0030544 "Hsp70 protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0061077 "chaperone-mediated protein folding" evidence=IDA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0051879 "Hsp90 protein binding" evidence=IDA

GO:0006461 "protein complex assembly" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

GO:0045070 "positive regulation of viral genome replication" evidence=IMP

GO:0019076 "viral release from host cell" evidence=TAS

GO:0050714 "positive regulation of protein secretion" evidence=IMP

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0071492 "cellular response to UV-A" evidence=IMP

GO:0034389 "lipid particle organization" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IDA

UNIPROTKB|E1BXG9 PPID "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 119/300 (39%), Positives = 169/300 (56%)

Query:   111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
             FHRII QFM+QGGD +N NGTGGESIYG  FEDENF  KH   G LS+AN G P TN SQ
Sbjct:    73 FHRIIKQFMVQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKPGLLSMANAG-PGTNGSQ 131

Query:   171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWG 230
             FFIT  P  HLDGK+VVFG V +G GV + +  VE   + P   C I   G+L   +DWG
Sbjct:   132 FFITTVPTSHLDGKHVVFGQVIKGMGVVKILENVEVNGENPAKLCVIAECGELKEGDDWG 191

Query:   231 VAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
             +   DGS D YP FPED  S+ +   + +   +   IKN GN  F       A +     
Sbjct:   192 IVPQDGSGDTYPDFPED--SDIDLKDVLKGVAIAEDIKNIGNILFSTRDAQQADKSIASC 249

Query:   291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
             + Y++       +  +   ++   + +LN+ A +LK   ++ AI  C + L ++P N KA
Sbjct:   250 LMYVEASETVAEEGDKPKLKTVGLSCVLNIGACKLKLSDWQGAIESCSEALQIDPANTKA 309

Query:   351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
             L+RR +    + + +Q L D ++A ++ P D+ I  E   ++++++     EK  YA+MF
Sbjct:   310 LYRRAQGWQGIKDLDQALADLKKAHEIAPEDKAIQTETLKIKQKIKAQKEKEKAAYAKMF 369

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

TAIR|locus:2044596 SQN "SQUINT" [Arabidopsis thaliana (taxid:3702)]

 Score = 571 (206.1 bits), Expect = 2.3e-55, P = 2.3e-55
 Identities = 134/325 (41%), Positives = 182/325 (56%)

Query:    89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKL 148
             GE   GP   +    L      FHR+I  FMIQGGDI+  +GTGGESIYG  F+DENF+L
Sbjct:    42 GEKGLGP---NTGVPLHYKGNRFHRVIKGFMIQGGDISANDGTGGESIYGLKFDDENFEL 98

Query:   149 KHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAEN 208
             KH+ +G LS+AN+G PNTN SQFFIT     HLDGK+VVFG V +G GV R + +V  E 
Sbjct:    99 KHERKGMLSMANSG-PNTNGSQFFITTTRTSHLDGKHVVFGRVTKGMGVVRSIEHVSIEE 157

Query:   209 DK-PLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTI 267
                P     I + G++    D G+ +     DVYP +P D   +P   +L+   + +  +
Sbjct:   158 QSCPSQDVVIHDCGEIPEGADDGICDFFKDGDVYPDWPIDLNESP--AELSWWMETVDFV 215

Query:   268 KNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKHFRSYYTAALLNMAAVQL 325
             K  GNE+FK      A RKY+KA+RY+   W  +   +      R   +    N AA +L
Sbjct:   216 KAHGNEHFKKQDYKMALRKYRKALRYLDICWEKEGIDEETSTALRKTKSQIFTNSAACKL 275

Query:   326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
             KF   K A+   +  +  E NNVKALFR+G+A +++NN +   +  E+AL   PND  I 
Sbjct:   276 KFGDAKGALLDTEFAMRDEDNNVKALFRQGQAYMALNNVDAAAESLEKALQFEPNDAGIK 335

Query:   386 KEIAFVRKQMRHHLNLEKMTYARMF 410
             KE A V K++    N EK  Y +MF
Sbjct:   336 KEYAAVMKKIAFRDNEEKKQYRKMF 360

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0006457 "protein folding" evidence=IEA

GO:0010050 "vegetative phase change" evidence=IMP

GO:0010582 "floral meristem determinacy" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C566	CYP40_ARATH	5, ., 2, ., 1, ., 8	0.4039	0.8574	0.9833	yes	N/A
Q6BXZ7	PPID_DEBHA	5, ., 2, ., 1, ., 8	0.3470	0.8405	0.9405	yes	N/A
Q75A33	PPID_ASHGO	5, ., 2, ., 1, ., 8	0.3292	0.8526	0.9566	yes	N/A
Q6CBP4	PPID_YARLI	5, ., 2, ., 1, ., 8	0.3616	0.8478	0.9564	yes	N/A
Q4HXF6	PPID_GIBZE	5, ., 2, ., 1, ., 8	0.3641	0.7801	0.8682	yes	N/A
Q4WIF3	PPID_ASPFU	5, ., 2, ., 1, ., 8	0.3686	0.8454	0.9283	yes	N/A
P26882	PPID_BOVIN	5, ., 2, ., 1, ., 8	0.4079	0.8550	0.9567	yes	N/A
P53691	PPID_YEAST	5, ., 2, ., 1, ., 8	0.3737	0.8478	0.9460	yes	N/A
Q9CR16	PPID_MOUSE	5, ., 2, ., 1, ., 8	0.4179	0.8550	0.9567	yes	N/A
Q6FNU6	PPID_CANGA	5, ., 2, ., 1, ., 8	0.3510	0.8454	0.9433	yes	N/A
Q2U0E0	PPID_ASPOR	5, ., 2, ., 1, ., 8	0.3673	0.8405	0.9380	yes	N/A
Q6CL78	PPID_KLULA	5, ., 2, ., 1, ., 8	0.3470	0.8502	0.9462	yes	N/A
Q11004	PPID_SCHPO	5, ., 2, ., 1, ., 8	0.3317	0.8236	0.9578	yes	N/A
Q6DGG0	PPID_RAT	5, ., 2, ., 1, ., 8	0.4154	0.8550	0.9567	yes	N/A
Q5B4E7	PPID_EMENI	5, ., 2, ., 1, ., 8	0.3698	0.8454	0.9408	yes	N/A
P0CP80	PPID_CRYNJ	5, ., 2, ., 1, ., 8	0.3451	0.8454	0.9333	yes	N/A
Q08752	PPID_HUMAN	5, ., 2, ., 1, ., 8	0.4079	0.8550	0.9567	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.921
4th Layer	5.2.1.8	0.914

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	414
cd01926	164	cd01926, cyclophilin_ABH_like, cyclophilin_ABH_lik	8e-80
PTZ00060	183	PTZ00060, PTZ00060, cyclophilin; Provisional	8e-66
PLN03149	186	PLN03149, PLN03149, peptidyl-prolyl isomerase H (c	1e-47
cd00317	146	cd00317, cyclophilin, cyclophilin: cyclophilin-typ	2e-44
COG0652	158	COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase	6e-41
pfam00160	144	pfam00160, Pro_isomerase, Cyclophilin type peptidy	4e-39
cd01928	153	cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3	4e-37
cd01922	146	cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCY	2e-34
cd01923	159	cd01923, cyclophilin_RING, cyclophilin_RING: cyclo	3e-32
cd01927	148	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclo	2e-31
cd01925	171	cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeC	7e-25
PTZ00221	249	PTZ00221, PTZ00221, cyclophilin; Provisional	1e-21
cd01921	166	cd01921, cyclophilin_RRM, cyclophilin_RRM: cycloph	4e-15
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-12
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	9e-10
cd01920	155	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP	2e-09
PRK10903	190	PRK10903, PRK10903, peptidyl-prolyl cis-trans isom	3e-09
pfam13414	69	pfam13414, TPR_11, TPR repeat	8e-09
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-07
pfam13371	73	pfam13371, TPR_9, Tetratricopeptide repeat	4e-06
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	5e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	1e-05
cd01924	176	cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40	2e-05
COG4235	287	COG4235, COG4235, Cytochrome c biogenesis factor [	1e-04
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	1e-04
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	2e-04
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	4e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	8e-04
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.001
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	0.001
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003
PRK10791	164	PRK10791, PRK10791, peptidyl-prolyl cis-trans isom	0.003

>gnl|CDD|238907 cd01926, cyclophilin_ABH_like, cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

 Score =  242 bits (621), Expect = 8e-80
 Identities = 100/210 (47%), Positives = 116/210 (55%), Gaps = 47/210 (22%)

Query: 12  IVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRII 71
            VF D++IG E  GR+V+ELF  +VPKTAENFRALCTGE  KGK GK   + GS FHR+I
Sbjct: 2   KVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGE--KGKGGKPFGYKGSTFHRVI 59

Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
           P FMIQGGD T  NGTGG+SIY                                      
Sbjct: 60  PDFMIQGGDFTRGNGTGGKSIY-------------------------------------- 81

Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
            GE      F DENFKLKH   G LS+AN G PNTN SQFFIT    P LDGK+VVFG V
Sbjct: 82  -GEK-----FPDENFKLKHTGPGLLSMANAG-PNTNGSQFFITTVKTPWLDGKHVVFGKV 134

Query: 192 RQGFGVAREVSYVEAENDKPLVTCTITNSG 221
            +G  V +++  V + N KP     I + G
Sbjct: 135 VEGMDVVKKIENVGSGNGKPKKKVVIADCG 164

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the splicesome. Length = 164

>gnl|CDD|240249 PTZ00060, PTZ00060, cyclophilin; Provisional

 Score =  207 bits (529), Expect = 8e-66
 Identities = 100/212 (47%), Positives = 114/212 (53%), Gaps = 46/212 (21%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D+SI     GR+V ELF  + PKTAENFRALC G+   G  GK LH+ GS       
Sbjct: 18  VFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGD-KVGSSGKNLHYKGS------- 69

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHRIIPQFM QGGDITN NGTG
Sbjct: 70  -------------------------------------IFHRIIPQFMCQGGDITNHNGTG 92

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           GESIYG  F DENFKLKH   G LS+AN G PNTN SQFFIT  PCP LDGK+VVFG V 
Sbjct: 93  GESIYGRKFTDENFKLKHDQPGLLSMANAG-PNTNGSQFFITTVPCPWLDGKHVVFGKVI 151

Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           +G  V R +     ++  P     +T+ G+L 
Sbjct: 152 EGMEVVRAMEKEGTQSGYPKKPVVVTDCGELQ 183

Length = 183

>gnl|CDD|178694 PLN03149, PLN03149, peptidyl-prolyl isomerase H (cyclophilin H); Provisional

 Score =  160 bits (407), Expect = 1e-47
 Identities = 90/216 (41%), Positives = 109/216 (50%), Gaps = 49/216 (22%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N +VF DV+IG    GR+ +ELF  I PKTAENFR  CTGE+ K   G    + G +FHR
Sbjct: 18  NPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRKA--GLPQGYKGCQFHR 75

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           +I  FMIQGGD                                          GD     
Sbjct: 76  VIKDFMIQGGDFLK---------------------------------------GD----- 91

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTG  SIYG  FEDENF  KH   G LS+AN+G PNTN  QFFIT A C  LD K+VVFG
Sbjct: 92  GTGCVSIYGSKFEDENFIAKHTGPGLLSMANSG-PNTNGCQFFITCAKCDWLDNKHVVFG 150

Query: 190 CVR-QGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
            V   G  V R++  V    N++P + C I+  G++
Sbjct: 151 RVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM 186

Length = 186

>gnl|CDD|238194 cd00317, cyclophilin, cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

 Score =  151 bits (383), Expect = 2e-44
 Identities = 77/197 (39%), Positives = 94/197 (47%), Gaps = 57/197 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
            GR+VIEL+    PKT ENF +L  G +          + G+ FHR+IP FMIQGGD T 
Sbjct: 6   KGRIVIELYGDEAPKTVENFLSLARGGF----------YDGTTFHRVIPGFMIQGGDPTG 55

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G G  S  G  F DENF LK    Y HR                              
Sbjct: 56  TGGGG--SGPGYKFPDENFPLK----YHHR------------------------------ 79

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
                     G LS+AN G PNTN SQFFIT AP PHLDGK+ VFG V +G  V  ++  
Sbjct: 80  ---------RGTLSMANAG-PNTNGSQFFITTAPTPHLDGKHTVFGKVVEGMDVVDKIER 129

Query: 204 VE-AENDKPLVTCTITN 219
            +  EN +P+   TI++
Sbjct: 130 GDTDENGRPIKPVTISD 146

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP, whose isomerization or chaperoning activities may play a role in RNA splicing. . Length = 146

>gnl|CDD|223725 COG0652, PpiB, Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

 Score =  142 bits (360), Expect = 6e-41
 Identities = 62/192 (32%), Positives = 80/192 (41%), Gaps = 55/192 (28%)

Query: 19  IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQG 78
           I E   G + IEL+    PKT  NF  L    +          + G+ FHR+IP FMIQG
Sbjct: 3   ILETNKGDITIELYPDKAPKTVANFLQLVKEGF----------YDGTIFHRVIPGFMIQG 52

Query: 79  GDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYG 138
           GD T  +GTGG       F+DENF                                    
Sbjct: 53  GDPTGGDGTGGPGPP---FKDENF------------------------------------ 73

Query: 139 PCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVA 198
                     +HK  G LS+A  G PN+N SQFFIT+   P LDGK  VFG V +G  V 
Sbjct: 74  -----ALNGDRHKR-GTLSMARAGDPNSNGSQFFITVVDNPFLDGKYTVFGQVVEGMDVV 127

Query: 199 REVSYVEAENDK 210
            ++   + ++  
Sbjct: 128 DKIKNGDTDDSG 139

Length = 158

>gnl|CDD|215759 pfam00160, Pro_isomerase, Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

 Score =  137 bits (346), Expect = 4e-39
 Identities = 70/206 (33%), Positives = 86/206 (41%), Gaps = 63/206 (30%)

Query: 14  FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQ 73
           FLD++      GR+VIELF    PKT ENF +LC          K   + G+ FHR+IP 
Sbjct: 1   FLDITTNL---GRIVIELFGDEAPKTVENFLSLC----------KKGFYDGTIFHRVIPG 47

Query: 74  FMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGG 133
           FMIQGGD T     G  SI                                         
Sbjct: 48  FMIQGGDPTGPGTGGKRSI----------------------------------------- 66

Query: 134 ESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQ 193
                    DE         G LS+A +G PN+  SQFFITL   PHLDG   VFG V +
Sbjct: 67  --------PDEFVSKLKHKRGTLSMARSG-PNSAGSQFFITLGDAPHLDGGYTVFGRVVE 117

Query: 194 GFGVAREVSYVEAENDKPLVTCTITN 219
           G  V  ++  VE + D+PL    IT+
Sbjct: 118 GMDVVEKIEKVETDGDRPLKDVKITS 143

The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyze peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function. Length = 144

>gnl|CDD|238909 cd01928, Cyclophilin_PPIL3_like, Cyclophilin_PPIL3_like

 Score =  132 bits (333), Expect = 4e-37
 Identities = 72/197 (36%), Positives = 84/197 (42%), Gaps = 56/197 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G + IELF    PK  ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 9   LGDIKIELFCDDCPKACENFLALCASGY----------YNGCIFHRNIKGFMVQTGDPTG 58

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GGESI+G  FEDE                           F  T            
Sbjct: 59  -TGKGGESIWGKKFEDE---------------------------FRET------------ 78

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
               LKH   G +S+AN G PNTN SQFFIT A  PHLDGK  VFG V  GF     +  
Sbjct: 79  ----LKHDSRGVVSMANNG-PNTNGSQFFITYAKQPHLDGKYTVFGKVIDGFETLDTLEK 133

Query: 204 VEAE-NDKPLVTCTITN 219
           +  +   +PL    I +
Sbjct: 134 LPVDKKYRPLEEIRIKD 150

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known. Length = 153

>gnl|CDD|238903 cd01922, cyclophilin_SpCYP2_like, cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

 Score =  124 bits (313), Expect = 2e-34
 Identities = 70/193 (36%), Positives = 90/193 (46%), Gaps = 57/193 (29%)

Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
           E  +G + +EL+ +  PKT +NF  L    Y          + G+ FHR+I  FMIQGGD
Sbjct: 3   ETTMGEITLELYWNHAPKTCKNFYELAKRGY----------YNGTIFHRLIKDFMIQGGD 52

Query: 81  ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
            T                                               G GG SIYG  
Sbjct: 53  PTG---------------------------------------------TGRGGASIYGKK 67

Query: 141 FEDE-NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAR 199
           FEDE + +LKH   G LS+AN G PNTN SQFFITLAP P LDGK+ +FG V +G  V  
Sbjct: 68  FEDEIHPELKHTGAGILSMANAG-PNTNGSQFFITLAPTPWLDGKHTIFGRVSKGMKVIE 126

Query: 200 EVSYVEAENDKPL 212
            +  V+ + D+P+
Sbjct: 127 NMVEVQTQTDRPI 139

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling. Length = 146

>gnl|CDD|238904 cd01923, cyclophilin_RING, cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

 Score =  119 bits (300), Expect = 3e-32
 Identities = 69/195 (35%), Positives = 80/195 (41%), Gaps = 58/195 (29%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + +EL     PK  ENF  LC   Y          + G+ FHR I  FMIQGGD T  
Sbjct: 9   GDLNLELHCDKAPKACENFIKLCKKGY----------YDGTIFHRSIRNFMIQGGDPT-- 56

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
            GTG                                           GGESI+G  F+DE
Sbjct: 57  -GTG------------------------------------------RGGESIWGKPFKDE 73

Query: 145 -NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
               L H   G LS+AN+G PNTN SQFFIT   C HLDGK+ VFG V  G      +  
Sbjct: 74  FKPNLSHDGRGVLSMANSG-PNTNGSQFFITYRSCKHLDGKHTVFGRVVGGLETLEAMEN 132

Query: 204 VEAE-NDKPLVTCTI 217
           V     D+P     I
Sbjct: 133 VPDPGTDRPKEEIKI 147

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination. Length = 159

>gnl|CDD|238908 cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

 Score =  116 bits (293), Expect = 2e-31
 Identities = 61/127 (48%), Positives = 74/127 (58%), Gaps = 9/127 (7%)

Query: 100 ENFKLKVISQY-----FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFE 153
           ENF     + Y     FHR+I  FMIQ GD T  +GTGGESI+G  FEDE +  LKH   
Sbjct: 23  ENFTTHARNGYYNNTIFHRVIKGFMIQTGDPTG-DGTGGESIWGKEFEDEFSPSLKHDRP 81

Query: 154 GQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPL 212
             LS+AN G PNTN SQFFIT    P LD K+ VFG V +G  V + +  V+  +ND+P 
Sbjct: 82  YTLSMANAG-PNTNGSQFFITTVATPWLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPY 140

Query: 213 VTCTITN 219
               I N
Sbjct: 141 EDIKIIN 147

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known. Length = 148

>gnl|CDD|238906 cd01925, cyclophilin_CeCYP16-like, cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

 Score = 99.7 bits (249), Expect = 7e-25
 Identities = 40/82 (48%), Positives = 54/82 (65%), Gaps = 3/82 (3%)

Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNS 169
           FHR++P F+IQGGD T   GTGGESIYG  F+DE + +L+    G + +AN G  ++N S
Sbjct: 47  FHRVVPGFIIQGGDPTG-TGTGGESIYGEPFKDEFHSRLRFNRRGLVGMANAG-DDSNGS 104

Query: 170 QFFITLAPCPHLDGKNVVFGCV 191
           QFF TL     L+ K+ +FG V
Sbjct: 105 QFFFTLDKADELNNKHTLFGKV 126

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding. Length = 171

>gnl|CDD|140248 PTZ00221, PTZ00221, cyclophilin; Provisional

 Score = 93.0 bits (231), Expect = 1e-21
 Identities = 62/214 (28%), Positives = 95/214 (44%), Gaps = 50/214 (23%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYG-KGKLGKALHFTGSRFHRII 71
            FLD+SIG+   GR+V ELF+ +VP+T ENFRAL TG  G     G  L +  +  H + 
Sbjct: 55  AFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHV- 113

Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
                                      D N  + V+               G++ +FN  
Sbjct: 114 ---------------------------DRNNNIIVL---------------GELDSFN-- 129

Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
              S  G    DE ++ +H   G L++ + G P+T+ S F ITL P P LD K VVFG  
Sbjct: 130 --VSSTGTPIADEGYRHRHTERGLLTMISEG-PHTSGSVFGITLGPSPSLDFKQVVFGKA 186

Query: 192 RQGFGVAREVSYVEAEN-DKPLVTCTITNSGQLS 224
                +  ++  +  ++  +PL+  T++  G L+
Sbjct: 187 VDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALT 220

Length = 249

>gnl|CDD|238902 cd01921, cyclophilin_RRM, cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

 Score = 72.4 bits (178), Expect = 4e-15
 Identities = 59/201 (29%), Positives = 80/201 (39%), Gaps = 52/201 (25%)

Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
           E  +G +VI+LF    P    NF  LC  +Y          +    F+ +   F+ Q GD
Sbjct: 3   ETTLGDLVIDLFTDECPLACLNFLKLCKLKY----------YNFCLFYNVQKDFIAQTGD 52

Query: 81  ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
            T   G GGESIY                             G    F            
Sbjct: 53  PTG-TGAGGESIYSQ-------------------------LYGRQARF------------ 74

Query: 141 FEDE-NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAP-CPHLDGKNVVFGCVRQGFGVA 198
           FE E    LKH  +G +S+ N G    N SQF+ITL     +LDGK+ VFG V +GF V 
Sbjct: 75  FEPEILPLLKHSKKGTVSMVNAGDNL-NGSQFYITLGENLDYLDGKHTVFGQVVEGFDVL 133

Query: 199 REVSYVEAEND-KPLVTCTIT 218
            +++    ++D +PL    I 
Sbjct: 134 EKINDAIVDDDGRPLKDIRIK 154

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis. Length = 166

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 272 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 331
                L  ++     Y +A+ Y   Y ++               A  N+AA   K   Y+
Sbjct: 1   EALLNLGNLYYKLGDYDEALEY---YEKALEL------DPDNADAYYNLAAAYYKLGKYE 51

Query: 332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
            A+   +  L ++P+N KA +  G A   +  +E+ L+ YE+AL+L PN
Sbjct: 52  EALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 55.1 bits (133), Expect = 9e-10
 Identities = 21/88 (23%), Positives = 43/88 (48%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
           ALLN+  +  K   Y  A+   +  L ++P+N  A +    A   +  +E+ L+DYE+AL
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 376 DLLPNDQQILKEIAFVRKQMRHHLNLEK 403
           +L P++ +    +     ++  +    +
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALE 89

Length = 100

>gnl|CDD|238901 cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

 Score = 55.9 bits (135), Expect = 2e-09
 Identities = 46/189 (24%), Positives = 66/189 (34%), Gaps = 62/189 (32%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G +V+EL+    P T ENF A       KG       +  + FHR+I  F+IQGG  T  
Sbjct: 7   GDIVVELYDDKAPITVENFLAYVR----KG------FYDNTIFHRVISGFVIQGGGFTP- 55

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
                                                            E+  G      
Sbjct: 56  ------------------------------------DLAQKETLKPIKNEAGNG------ 73

Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN-----VVFGCVRQGFGVAR 199
              L +   G +++A T  P++  SQFFI L     LD +N      VFG V +G  V  
Sbjct: 74  ---LSNT-RGTIAMARTNAPDSATSQFFINLKDNASLDYQNEQWGYTVFGEVTEGMDVVD 129

Query: 200 EVSYVEAEN 208
           +++ VE  +
Sbjct: 130 KIAGVETYS 138

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding. Length = 155

>gnl|CDD|182824 PRK10903, PRK10903, peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 36/106 (33%), Positives = 51/106 (48%), Gaps = 8/106 (7%)

Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
           FHR+IP FMIQGG    F     +    P  ++E         G +++A T   ++  SQ
Sbjct: 70  FHRVIPGFMIQGG---GFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQ 126

Query: 171 FFITLAPCPHLD-GKN----VVFGCVRQGFGVAREVSYVEAENDKP 211
           FFI +A    LD G+      VFG V +G  VA ++S V   +  P
Sbjct: 127 FFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGP 172

Length = 190

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 51.5 bits (124), Expect = 8e-09
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 1/65 (1%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQA 374
           AL N+     K   Y  AI   +  L ++P+N +A +    A + +  ++E+ L+D E+A
Sbjct: 5   ALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKA 64

Query: 375 LDLLP 379
           L+L P
Sbjct: 65  LELDP 69

Length = 69

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 31/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 330
           G  Y  L ++  AQ+ Y           Q+ +   +         A L +A + L    +
Sbjct: 132 GLAYLGLGQLELAQKSY----------EQALAIDPR------SLYAKLGLAQLALAENRF 175

Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
             A  L D++L  +P NV AL  +G   +S+ N E  L  Y +A+ L PN+  +L
Sbjct: 176 DEARALIDEVLTADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNIAVL 230

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205550 pfam13371, TPR_9, Tetratricopeptide repeat

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 4/69 (5%)

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           + ++RA+ + + +LL+ P++      RG     +  F+  L D E  L+L P+     + 
Sbjct: 9   EDFERALAVVERLLLLAPDDPYERRDRGLLYAQLGCFQAALADLEYFLELCPDAPDAER- 67

Query: 388 IAFVRKQMR 396
              +R+Q+ 
Sbjct: 68  ---IREQLA 73

Length = 73

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 43.4 bits (103), Expect = 5e-06
 Identities = 15/64 (23%), Positives = 23/64 (35%)

Query: 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
           L +A   L+   Y  A+   +  L   P   +AL   G A +      +       AL  
Sbjct: 1   LALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Query: 378 LPND 381
            P+D
Sbjct: 61  DPDD 64

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.4 bits (108), Expect = 1e-05
 Identities = 26/147 (17%), Positives = 60/147 (40%), Gaps = 8/147 (5%)

Query: 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 316
             +  ++   +         L  + +A  +Y++A+  ++           K        A
Sbjct: 153 YEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL--------KLNPDDDAEA 204

Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
           LLN+  + LK   Y+ A+   +  L ++P+N +AL+      + +  +E+ L+  E+AL+
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264

Query: 377 LLPNDQQILKEIAFVRKQMRHHLNLEK 403
           L P+   +   +  +  +    L    
Sbjct: 265 LDPDLYNLGLALLLLLAEALELLEKAD 291

Length = 291

>gnl|CDD|238905 cd01924, cyclophilin_TLP40_like, cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 49/191 (25%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + I L  +  P TA NF  L      +G       + G  FHR+   F++Q GD    
Sbjct: 7   GTITIVLDGYNAPVTAGNFVDLVE----RG------FYDGMEFHRVEGGFVVQTGD---- 52

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIP-QFMIQGGDITNFNGTGGESIYGPCFE- 142
               G++   P  E              R IP +   +G           + +YG   E 
Sbjct: 53  --PQGKNPGFPDPETGKS----------RTIPLEIKPEGQ---------KQPVYGKTLEE 91

Query: 143 ----DENFKLKHKFEGQLSLANTGH-PNTNNSQFFITL-------APCPHLDGKNVVFGC 190
               DE   L     G +++A T   PN+ +SQFF  L       +    LDG+  VFG 
Sbjct: 92  AGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFLLKDNELTPSRNNVLDGRYAVFGY 151

Query: 191 VRQGFGVAREV 201
           V  G  + RE+
Sbjct: 152 VTDGLDILREL 162

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation. Length = 176

>gnl|CDD|226687 COG4235, COG4235, Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 32/159 (20%), Positives = 55/159 (34%), Gaps = 26/159 (16%)

Query: 251 NPETVQ--LNQMEDVIRTIKNSGNE-------YFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
             + ++  + ++E  ++               Y  L R  DA   Y+ A+R     +  +
Sbjct: 134 AEQEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPE 191

Query: 302 SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
                         AL   A  Q+  K    A  L    L ++P N++AL     A    
Sbjct: 192 ILLG-------LAEALYYQAGQQMTAK----ARALLRQALALDPANIRALSLLAFAAFEQ 240

Query: 362 NNFEQGLQDYEQALDLLPND----QQILKEIAFVRKQMR 396
            ++ +    ++  LDLLP D      I + IA    Q  
Sbjct: 241 GDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALAQRS 279

Length = 287

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
            KAL+  G A + +  +++ L+ YE+AL+L PN+
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%)

Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
           FHR+I  FMIQGG      G   ++   P   + N  LK+   G L++A T  P++  +Q
Sbjct: 41  FHRVINGFMIQGGGFE--PGMKQKATKEPIKNEANNGLKNT-RGTLAMARTQAPHSATAQ 97

Query: 171 FFITLA 176
           FFI + 
Sbjct: 98  FFINVV 103

Length = 164

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 12/34 (35%), Positives = 24/34 (70%)

Query: 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
            +AL+  G A + + ++++ L+ YE+AL+L PN+
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 41.6 bits (98), Expect = 8e-04
 Identities = 17/80 (21%), Positives = 37/80 (46%)

Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
            L +A   L     K+A+ + ++     P++ +A    GRAQ++  +  + +  +++ L 
Sbjct: 570 ALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLA 629

Query: 377 LLPNDQQILKEIAFVRKQMR 396
           L P+    L  +A     M+
Sbjct: 630 LQPDSALALLLLADAYAVMK 649

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 12/53 (22%), Positives = 29/53 (54%)

Query: 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
           +N +AL   G A   + ++++ ++ YE+AL+L P++ +    +A    ++   
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKD 53

Length = 69

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 36.0 bits (84), Expect = 0.001
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
            +AL+  G A   + ++E+ L+ YE+AL+L PN+
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 7/78 (8%)

Query: 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMN 362
                AAL N+A V  +   Y  A+ L +  L +        P   +AL    R  +++ 
Sbjct: 1   HPDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALG 60

Query: 363 NFEQGLQDYEQALDLLPN 380
           ++++ L+  E+AL L   
Sbjct: 61  DYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 29/133 (21%), Positives = 46/133 (34%), Gaps = 9/133 (6%)

Query: 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA 316
           L      I    N+      L  +     ++++A        +  +    K   +   A 
Sbjct: 213 LAAYRKAIALRPNNIAVLLALATILIEAGEFEEA--------EKHADALLKKAPNSPLAH 264

Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
            L  A V  + K Y+ A     D L   P  + AL   G ++  + N EQ  Q   Q L 
Sbjct: 265 YLK-ALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASEYQLGNLEQAYQYLNQILK 323

Query: 377 LLPNDQQILKEIA 389
             PN  Q  + +A
Sbjct: 324 YAPNSHQARRLLA 336

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|182734 PRK10791, PRK10791, peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 25 GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGG 79
          G +VI+ F    P+T +NF   C   +          +  + FHR+I  FMIQGG
Sbjct: 9  GDIVIKTFDDKAPETVKNFLDYCREGF----------YNNTIFHRVINGFMIQGG 53

Length = 164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	414
KOG0546|consensus	372		100.0
KOG0880|consensus	217		100.0
KOG0879|consensus	177		100.0
PTZ00221	249	cyclophilin; Provisional	100.0
PTZ00060	183	cyclophilin; Provisional	100.0
cd01926	164	cyclophilin_ABH_like cyclophilin_ABH_like: Cycloph	100.0
PLN03149	186	peptidyl-prolyl isomerase H (cyclophilin H); Provi	100.0
KOG0881|consensus	164		100.0
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	100.0
KOG0111|consensus	298		100.0
cd01927	148	cyclophilin_WD40 cyclophilin_WD40: cyclophilin-typ	100.0
cd01923	159	cyclophilin_RING cyclophilin_RING: cyclophilin-typ	100.0
cd01928	153	Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like. Pro	100.0
cd01922	146	cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: c	100.0
cd01921	166	cyclophilin_RRM cyclophilin_RRM: cyclophilin-type	100.0
KOG0883|consensus	518		100.0
KOG0884|consensus	161		100.0
PRK10903	190	peptidyl-prolyl cis-trans isomerase A (rotamase A)	100.0
KOG0882|consensus	558		100.0
cd01925	171	cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like:	100.0
cd01920	155	cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyc	100.0
PRK10791	164	peptidyl-prolyl cis-trans isomerase B (rotamase B)	100.0
KOG0865|consensus	167		100.0
cd01924	176	cyclophilin_TLP40_like cyclophilin_TLP40_like: cyc	100.0
cd00317	146	cyclophilin cyclophilin: cyclophilin-type peptidyl	100.0
PF00160	155	Pro_isomerase: Cyclophilin type peptidyl-prolyl ci	100.0
KOG0415|consensus	479		100.0
KOG0885|consensus	439		100.0
KOG0543|consensus	397		99.94
KOG0553|consensus	304		99.86
KOG0545|consensus	329		99.84
KOG4234|consensus	271		99.83
KOG0548|consensus	539		99.69
KOG0547|consensus	606		99.67
KOG4648|consensus	536		99.65
PRK15359	144	type III secretion system chaperone protein SscB;	99.62
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.62
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.55
KOG0550|consensus	486		99.55
KOG0548|consensus	539		99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.46
KOG0551|consensus	390		99.46
KOG4626|consensus	966		99.46
KOG4626|consensus	966		99.45
KOG4642|consensus	284		99.39
KOG0376|consensus	476		99.39
PRK11189	296	lipoprotein NlpI; Provisional	99.36
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.31
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.29
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.26
PRK15359	144	type III secretion system chaperone protein SscB;	99.24
KOG1155|consensus	559		99.24
KOG1155|consensus	559		99.22
KOG1126|consensus	638		99.22
PRK15331	165	chaperone protein SicA; Provisional	99.22
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.21
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.19
KOG0624|consensus	504		99.17
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.17
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.15
KOG0547|consensus	606		99.15
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.15
PRK12370	553	invasion protein regulator; Provisional	99.15
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.14
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.13
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.12
KOG1126|consensus	638		99.11
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.11
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.11
KOG1308|consensus	377		99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
PRK12370	553	invasion protein regulator; Provisional	99.1
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.09
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.09
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.08
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.07
KOG1125|consensus	579		99.05
KOG4555|consensus	175		99.05
KOG1173|consensus	611		99.04
PRK11189	296	lipoprotein NlpI; Provisional	99.04
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.03
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.02
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.01
KOG0624|consensus	504		98.96
PLN02789	320	farnesyltranstransferase	98.96
KOG0553|consensus	304		98.95
PLN02789	320	farnesyltranstransferase	98.95
PF13512	142	TPR_18: Tetratricopeptide repeat	98.94
PF13371	73	TPR_9: Tetratricopeptide repeat	98.93
KOG2003|consensus	840		98.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.9
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.9
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.89
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.88
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.88
PRK10803	263	tol-pal system protein YbgF; Provisional	98.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.86
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.84
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.83
KOG0550|consensus	486		98.83
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.83
KOG2076|consensus	895		98.83
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.81
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.8
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.8
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.79
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.77
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.74
KOG1125|consensus	579		98.73
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.73
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.72
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.72
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.71
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.71
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.71
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.71
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.71
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.71
KOG4162|consensus	799		98.68
KOG2002|consensus	1018		98.67
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.66
PRK14574	822	hmsH outer membrane protein; Provisional	98.66
KOG1128|consensus	777		98.66
KOG1840|consensus	508		98.64
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.63
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.61
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.59
KOG1840|consensus	508		98.58
PF13371	73	TPR_9: Tetratricopeptide repeat	98.57
PF12688	120	TPR_5: Tetratrico peptide repeat	98.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.53
KOG1310|consensus	758		98.52
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.5
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.49
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.49
KOG2003|consensus	840		98.48
KOG1129|consensus	478		98.48
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.47
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.46
KOG3060|consensus	289		98.41
KOG1156|consensus	700		98.4
KOG1128|consensus	777		98.39
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.38
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.38
PRK14574	822	hmsH outer membrane protein; Provisional	98.38
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.37
PRK11906	458	transcriptional regulator; Provisional	98.35
KOG4162|consensus	799		98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
KOG2002|consensus	1018		98.34
PRK15331	165	chaperone protein SicA; Provisional	98.32
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.3
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.29
KOG3060|consensus	289		98.28
PF12688	120	TPR_5: Tetratrico peptide repeat	98.27
KOG2076|consensus	895		98.27
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.25
PRK10803	263	tol-pal system protein YbgF; Provisional	98.23
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.23
KOG0543|consensus	397		98.22
KOG1129|consensus	478		98.22
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.2
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.19
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.18
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.14
PF13428	44	TPR_14: Tetratricopeptide repeat	98.13
KOG4648|consensus	536		98.12
KOG1174|consensus	564		98.12
PF13431	34	TPR_17: Tetratricopeptide repeat	98.11
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	98.09
KOG1130|consensus	639		98.08
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.07
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.07
KOG1173|consensus	611		98.07
KOG1174|consensus	564		98.06
KOG4234|consensus	271		98.04
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.02
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.02
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.01
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.99
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.98
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.95
PRK11906	458	transcriptional regulator; Provisional	97.94
KOG1156|consensus	700		97.94
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.94
PF13428	44	TPR_14: Tetratricopeptide repeat	97.93
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.93
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.93
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.92
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.88
KOG1127|consensus	1238		97.85
KOG4555|consensus	175		97.85
KOG1127|consensus	1238		97.77
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.75
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.74
KOG1130|consensus	639		97.73
KOG2796|consensus	366		97.72
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.71
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.69
KOG4642|consensus	284		97.67
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.67
KOG3785|consensus	557		97.65
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.62
KOG0495|consensus	913		97.61
PRK10941	269	hypothetical protein; Provisional	97.6
PF13512	142	TPR_18: Tetratricopeptide repeat	97.58
KOG4151|consensus	748		97.58
KOG0495|consensus	913		97.56
KOG3364|consensus	149		97.55
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.53
KOG4507|consensus	886		97.42
KOG3785|consensus	557		97.41
KOG2053|consensus	932		97.4
KOG1941|consensus	518		97.4
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	97.37
KOG4814|consensus	872		97.37
KOG3081|consensus	299		97.34
KOG1586|consensus	288		97.29
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.28
KOG1941|consensus	518		97.27
PF13431	34	TPR_17: Tetratricopeptide repeat	97.26
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.26
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.25
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.24
KOG2376|consensus	652		97.22
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.19
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	97.14
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.13
KOG0551|consensus	390		97.09
KOG1585|consensus	308		97.05
KOG2376|consensus	652		96.99
KOG3824|consensus	472		96.96
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.95
KOG0376|consensus	476		96.95
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.93
KOG2471|consensus	696		96.93
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.88
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.82
KOG1308|consensus	377		96.79
KOG1585|consensus	308		96.78
KOG0882|consensus	558		96.76
KOG2610|consensus	491		96.73
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.72
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.71
KOG0545|consensus	329		96.67
KOG4340|consensus	459		96.66
PRK04841	903	transcriptional regulator MalT; Provisional	96.6
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.59
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.59
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.57
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.54
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.54
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.54
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.54
KOG4340|consensus	459		96.51
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.51
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.49
COG2912	269	Uncharacterized conserved protein [Function unknow	96.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.46
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	96.42
PRK04841	903	transcriptional regulator MalT; Provisional	96.42
KOG2796|consensus	366		96.28
KOG2396|consensus	568		96.28
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.25
KOG1586|consensus	288		96.23
PLN03077	857	Protein ECB2; Provisional	96.22
PLN03218	1060	maturation of RBCL 1; Provisional	96.21
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.19
PLN03218	1060	maturation of RBCL 1; Provisional	96.15
KOG1915|consensus	677		96.15
KOG3824|consensus	472		96.12
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.11
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.84
KOG1915|consensus	677		95.7
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.42
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.33
PLN03077	857	Protein ECB2; Provisional	95.25
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	95.24
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.23
KOG2471|consensus	696		95.21
PRK00969	508	hypothetical protein; Provisional	95.21
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.21
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	95.15
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.1
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.96
KOG3081|consensus	299		94.93
KOG1070|consensus	1710		94.82
KOG4507|consensus	886		94.79
PRK10941	269	hypothetical protein; Provisional	94.72
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.7
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	94.67
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	94.58
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	94.58
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.54
KOG4814|consensus	872		94.54
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	94.52
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.42
COG3947	361	Response regulator containing CheY-like receiver a	94.31
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.23
PF04212	69	MIT: MIT (microtubule interacting and transport) d	94.13
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.02
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	93.96
KOG2300|consensus	629		93.8
KOG3617|consensus	1416		93.73
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	93.71
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.68
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.62
KOG2610|consensus	491		93.54
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	93.49
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.47
KOG3364|consensus	149		93.46
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	93.45
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.19
KOG2053|consensus	932		93.14
KOG1310|consensus	758		92.83
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	92.78
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	92.74
KOG1070|consensus	1710		92.63
TIGR03268	503	methan_mark_3 putative methanogenesis marker prote	92.49
COG5191	435	Uncharacterized conserved protein, contains HAT (H	92.36
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	92.3
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	92.27
KOG2047|consensus	835		92.02
KOG0686|consensus	466		91.86
PRK00969	508	hypothetical protein; Provisional	91.81
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	91.76
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.71
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	91.54
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	91.42
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	91.41
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	91.33
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	91.32
KOG1550|consensus	552		91.3
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	91.28
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.23
cd02656	75	MIT MIT: domain contained within Microtubule Inter	90.81
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	90.79
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	90.71
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	90.7
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.61
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	90.54
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.49
COG3898	531	Uncharacterized membrane-bound protein [Function u	90.48
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	90.28
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.28
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.16
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	90.03
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.84
KOG1550|consensus	552		89.83
KOG0530|consensus	318		88.98
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.78
KOG0292|consensus	1202		88.63
COG4455	273	ImpE Protein of avirulence locus involved in tempe	88.58
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	88.46
KOG0529|consensus	421		88.4
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	88.36
KOG2561|consensus	568		88.32
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.39
COG4070	512	Predicted peptidyl-prolyl cis-trans isomerase (rot	87.37
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	86.92
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	86.53
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.53
KOG3617|consensus	1416		86.46
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	86.17
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	86.1
COG0652	158	PpiB Peptidyl-prolyl cis-trans isomerase (rotamase	85.85
KOG1839|consensus	1236		85.79
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	85.76
KOG2300|consensus	629		85.68
KOG0529|consensus	421		85.45
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	85.44
KOG2047|consensus	835		85.28
KOG1839|consensus	1236		84.91
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.71
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	84.44
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	84.22
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	83.65
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	83.53
KOG2422|consensus	665		83.49
KOG0530|consensus	318		83.22
KOG0879|consensus	177		82.85
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	82.67
KOG1258|consensus	577		82.54
KOG0881|consensus	164		82.49
KOG1463|consensus	411		82.39
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.13
KOG2114|consensus	933		82.11
KOG2581|consensus	493		81.73
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	81.33
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	81.08
TIGR02710	380	CRISPR-associated protein, TIGR02710 family. Membe	80.97
KOG3807|consensus	556		80.91
COG2912	269	Uncharacterized conserved protein [Function unknow	80.79
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.74
PHA02537	230	M terminase endonuclease subunit; Provisional	80.62
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	80.52
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	80.48
KOG0880|consensus	217		80.21

>KOG0546|consensus

Probab=100.00  E-value=1.6e-77  Score=541.64  Aligned_cols=362  Identities=44%  Similarity=0.684  Sum_probs=327.2

Q ss_pred             ccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEeccceeccCCcc
Q psy793            4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQFMIQGGDIT   82 (414)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~~~iq~G~~~   82 (414)
                      ......||+|||||+|++.+.||||||||.|.||+||+||+.||+|..|.+ ..++.+.|+|+.|||||++|||||||++
T Consensus         2 ~~~~~~~pr~ffDISI~ge~~GRIvfeLf~dv~PKTaENFraLCtGE~G~~~~~gk~L~YKG~~FHRViK~FMiQgGDfs   81 (372)
T KOG0546|consen    2 GMSVRTNPRVFFDISIGGEPAGRIVFELFNDVVPKTAENFRALCTGEKGGGLTTGKPLHYKGSRFHRVIKNFMIQGGDFS   81 (372)
T ss_pred             CcccCCCceEEEEEEeCCcccceEEEEeecccCchhHHHHHHHhccccCCCCCCCCeeeecCchhheeeecceeeccccc
Confidence            344558999999999999999999999999999999999999999999864 6689999999999999999999999999


Q ss_pred             ccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCC
Q psy793           83 NFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTG  162 (414)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~  162 (414)
                      .++|                                            +||.||||..|+||+|.++|+.+++|||||.|
T Consensus        82 ~gnG--------------------------------------------tGGeSIYG~~FdDEnF~lKHdrpflLSMAN~G  117 (372)
T KOG0546|consen   82 EGNG--------------------------------------------TGGESIYGEKFDDENFELKHDRPFLLSMANRG  117 (372)
T ss_pred             cCCC--------------------------------------------CCcccccccccccccceeccCcchhhhhhcCC
Confidence            8887                                            77889999999999999999999999999999


Q ss_pred             CCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCC-CCccccEEEEcCCCCCCC----CCcCcccCCCC
Q psy793          163 HPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLN----EDWGVAENDGS  237 (414)
Q Consensus       163 ~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~-~~P~~~i~I~~~g~l~~~----~~~~i~~~~~~  237 (414)
                       |||||||||||+.++|||||+|+|||+||+|++||+.|+.+.++. .+|..+|+|.+||+|...    ..+.+...+..
T Consensus       118 -pNTNgSQFFITT~p~PHLdGkHVVFGqVI~G~~VVr~IEn~~~d~~skP~~dV~I~dCGel~~~~~~~~~~~a~~~~~s  196 (372)
T KOG0546|consen  118 -PNTNGSQFFITTVPTPHLDGKHVVFGQVIKGKEVVREIENLETDEESKPLADVVISDCGELVKKSKVKEDAGASEPDET  196 (372)
T ss_pred             -CCCCCcceEEeCCCCCCcCCceeEEeeEeechhHHHHHhccccccCCCCccceEecccccccccccccccccCCCCCCC
Confidence             999999999999999999999999999999999999999999854 479999999999999988    66777788999


Q ss_pred             CCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHH--H-HHhhHHHHH
Q psy793          238 QDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKT--Q-QKHFRSYYT  314 (414)
Q Consensus       238 ~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~--~-~~~~~~~~~  314 (414)
                      ++.++++|.++.. ...-+.....+.+...++.|+..|++++|..|...|.++++++.........+  + ...+.....
T Consensus       197 gd~~~d~p~~~~~-~~~~~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~  275 (372)
T KOG0546|consen  197 GDSYEDYPKDDRS-WDDKDFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRF  275 (372)
T ss_pred             CCccccccccccc-ccccccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhccccccccccccccccccccccc
Confidence            9999999977522 12223566777888999999999999999999999999999987522221111  1 334566777


Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      .++.|++.|-++++.+..|+..+..+++.++...++||+++++++.+.++++|+++++.+....|++..+...+..+...
T Consensus       276 ~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~  355 (372)
T KOG0546|consen  276 SIRRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQK  355 (372)
T ss_pred             ccccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhhc
Q psy793          395 MRHHLNLEKMTYARMFQ  411 (414)
Q Consensus       395 ~~~~~~~~k~~~~~~f~  411 (414)
                      +.++++++++.+.+||+
T Consensus       356 ~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  356 KKQYNRKQKKALSKMFS  372 (372)
T ss_pred             HHHHHHHHHHHHHhhcC
Confidence            99999999999999985

>KOG0880|consensus

Probab=100.00  E-value=8.4e-52  Score=342.25  Aligned_cols=169  Identities=57%  Similarity=0.925  Sum_probs=157.9

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhh-cCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCT-GEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~-~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      --..|||||.+++.+.|||+|+||+..+|+||+||..||. +..+.|       |.|+.||||||+|||||||++.+++ 
T Consensus        38 vT~kV~fdi~~g~~~~grIvigLfG~~vPKTV~NF~~l~~~~~~~~g-------Y~gS~FhRVi~nfmIQGGd~t~g~g-  109 (217)
T KOG0880|consen   38 VTHKVYFDIEIGGEPVGRIVIGLFGKVVPKTVENFRALATSGEKGYG-------YKGSKFHRVIPNFMIQGGDFTKGDG-  109 (217)
T ss_pred             ceeEEEEEEEECCEeccEEEEEeccccchHHHHHHHHHHccCCCCcc-------cCCceeeeeecCceeecCccccCCC-
Confidence            3458999999999999999999999999999999999999 555555       9999999999999999999998777 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                 +|+.|+||++|+||++.|+|+++|.||||+.| |++|
T Consensus       110 -------------------------------------------tGg~SIyG~~F~DENf~LkH~rpG~lSMAn~G-pDtN  145 (217)
T KOG0880|consen  110 -------------------------------------------TGGKSIYGEKFPDENFKLKHDRPGRLSMANAG-PDTN  145 (217)
T ss_pred             -------------------------------------------CCCeEeecCCCCCccceeecCCCceEeeeccC-CCCC
Confidence                                                       67778999999999999999999999999999 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCc
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDW  229 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~  229 (414)
                      |||||||+..+|||||+|+|||+|++||++|.+|+.+++ ..++|+++++|.+||.+......
T Consensus       146 GsQFfItT~~t~wLDGkhVVFGqVl~Gmdvv~~Ie~~~TD~~dkP~e~v~I~~~g~l~~~~~~  208 (217)
T KOG0880|consen  146 GSQFFITTVKTPWLDGKHVVFGQVLEGMDVVRKIENVKTDERDKPLEDVVIANCGELPVEYLE  208 (217)
T ss_pred             CceEEEEecCCccccCceeEEeeehhhHHHHHHHHhcccCCCCCccccEEEeecCcccccchh
Confidence            999999999999999999999999999999999999998 67899999999999998765443

>KOG0879|consensus

Probab=100.00  E-value=1.7e-50  Score=312.68  Aligned_cols=173  Identities=52%  Similarity=0.863  Sum_probs=161.1

Q ss_pred             ccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccc
Q psy793            4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN   83 (414)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~   83 (414)
                      +...+.||.||||+++++.+.|||.||||.|.+|+|++||++.|+|++-  ..++..-|+++.|||||++|||||||...
T Consensus         4 ~~r~~~nPvVF~dv~igg~~~GrikieLFadivPkTAENFRQFCTGE~r--~~g~PiGYK~~tFHRvIkdFMiQgGDFv~   81 (177)
T KOG0879|consen    4 QLRSPNNPVVFFDVAIGGRPIGRIKIELFADIVPKTAENFRQFCTGEYR--KDGVPIGYKNSTFHRVIKDFMIQGGDFVN   81 (177)
T ss_pred             cccCCCCCeEEEEEeeCCEEcceEEEEEeeccChhhHHHHHhhcccccc--cCCccccccccchHHHhhhheeccCceec
Confidence            3445679999999999999999999999999999999999999999883  33466779999999999999999999998


Q ss_pred             cCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCC
Q psy793           84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGH  163 (414)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~  163 (414)
                      ++|                                            +|-.|+||.+|+||++.++|+.+|+||||++| 
T Consensus        82 gDG--------------------------------------------tG~~sIy~~~F~DENFtlkH~~PGlLSMANsG-  116 (177)
T KOG0879|consen   82 GDG--------------------------------------------TGVASIYGSTFPDENFTLKHDGPGLLSMANSG-  116 (177)
T ss_pred             CCC--------------------------------------------ceEEEEcCCCCCCcceeeecCCCceeeccccC-
Confidence            777                                            66778999999999999999999999999999 


Q ss_pred             CCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793          164 PNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQL  223 (414)
Q Consensus       164 ~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l  223 (414)
                      +++||.|||||...+.+|||+|+|||||++|+.++++|+.+++ .+++|..+|.|..||.+
T Consensus       117 ~~tNGCQFFITcakcdfLD~KHVVFGrvldGlli~rkIEnvp~G~NnkPKl~v~i~qCGem  177 (177)
T KOG0879|consen  117 KDTNGCQFFITCAKCDFLDGKHVVFGRVLDGLLIMRKIENVPTGPNNKPKLPVVIVQCGEM  177 (177)
T ss_pred             CCCCCceEEEEecccccccCceEEEeeeehhhhhhhhhhcCCCCCCCCCCCcEEEeecccC
Confidence            9999999999999999999999999999999999999999998 78999999999999863

>PTZ00221 cyclophilin; Provisional

Probab=100.00  E-value=7.2e-46  Score=330.05  Aligned_cols=174  Identities=34%  Similarity=0.544  Sum_probs=155.6

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEecc-ceeccCCccccC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQ-FMIQGGDITNFN   85 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~-~~iq~G~~~~~~   85 (414)
                      ..+++|||||++++++.|+|+||||.|.||+||+||++||+|..+.+ ..+...+|+|+.||||+++ ||||+||+.+  
T Consensus        50 ~~~~rVfldisig~~~~GrIvIELf~d~aP~T~eNF~~Lc~g~~g~~~~~g~k~~Y~gt~FhRVi~~~f~iqgGD~~~--  127 (249)
T PTZ00221         50 QNSCRAFLDISIGDVLAGRLVFELFEDVVPETVENFRALITGSCGIDTNTGVKLDYLYTPVHHVDRNNNIIVLGELDS--  127 (249)
T ss_pred             CCCCEEEEEEeeCCeecceEEEEEeCCCCcHHHHHHHHHhhcccccccccCcccccCCCEEEEEeCCCCEEEeCCCCC--
Confidence            45889999999999999999999999999999999999999887654 2344566999999999986 8999999852  


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                                                                    .+.++||..|++|.+.++|+.+|+|+|++.+ |+
T Consensus       128 ----------------------------------------------~g~s~~G~~f~dE~~~~~h~~~G~LsMan~G-pn  160 (249)
T PTZ00221        128 ----------------------------------------------FNVSSTGTPIADEGYRHRHTERGLLTMISEG-PH  160 (249)
T ss_pred             ----------------------------------------------CCccCCCCcccCccccccCCCCCEEEeCcCC-CC
Confidence                                                          1235667889999989999999999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWG  230 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~  230 (414)
                      ++|||||||++++|+|||+|+|||+|++||++|++|+++++ ..++|..+|+|..||++..+.+.+
T Consensus       161 tngSQFfITl~~~p~LDgk~vVFGrVveGmdVv~kIe~v~~d~~grP~~~V~I~~Cgvl~~~~p~~  226 (249)
T PTZ00221        161 TSGSVFGITLGPSPSLDFKQVVFGKAVDDLSLLEKLESLPLDDVGRPLLPVTVSFCGALTGEKPPG  226 (249)
T ss_pred             CccceEEEECCCCCccCCCceEEEEEEeCHHHHHHHHcCCcCCCCCCCCCeEEEECeEecCCCCCc
Confidence            99999999999999999999999999999999999999987 578999999999999998775543

>PTZ00060 cyclophilin; Provisional

Probab=100.00  E-value=1.1e-45  Score=319.99  Aligned_cols=171  Identities=58%  Similarity=0.930  Sum_probs=154.8

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      ...||+||||+++++++.|+|+||||.+.||+||+||++||+|....+ .++.++|+||.||||+|+|+|||||+...++
T Consensus        12 ~~~~~~v~~di~i~~~~~G~ivIeL~~d~aP~t~~nF~~L~~g~~~~~-~g~~~~Y~~~~fhRvi~~~~iqgGd~~~~~g   90 (183)
T PTZ00060         12 MSKRPKVFFDISIDNAPAGRIVFELFSDVTPKTAENFRALCIGDKVGS-SGKNLHYKGSIFHRIIPQFMCQGGDITNHNG   90 (183)
T ss_pred             cCCCCEEEEEEEECCEeCceEEEEEcCCCCcHHHHHHHHHhcCCcccc-cCcccccCCeEEEEEcCCCeEEeCCccCCCC
Confidence            345899999999999999999999999999999999999998765422 4567899999999999999999999875444


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                  .++.++||..+++|...++|+.+|+|+|++.+ +++
T Consensus        91 --------------------------------------------~~g~~~~g~~~~~e~~~~~h~~~G~lsma~~g-~~~  125 (183)
T PTZ00060         91 --------------------------------------------TGGESIYGRKFTDENFKLKHDQPGLLSMANAG-PNT  125 (183)
T ss_pred             --------------------------------------------CCCCcccccccCCccccccCCCCCEEEeccCC-CCC
Confidence                                                        45566778888888888899889999999998 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      ++||||||++++|+||++|+|||+|++||+||++|+.+++..++|..+|+|.+||++
T Consensus       126 ~~sqFfIt~~~~~~Ldg~~tvFG~Vi~G~dvl~~I~~~~~~~~~P~~~v~I~~cg~~  182 (183)
T PTZ00060        126 NGSQFFITTVPCPWLDGKHVVFGKVIEGMEVVRAMEKEGTQSGYPKKPVVVTDCGEL  182 (183)
T ss_pred             CcceEEEEeCCCcccCCCccEEEEEEccHHHHHHHHccCCCCCCCcCCeEEEEeEEc
Confidence            999999999999999999999999999999999999998888899999999999986

>cd01926 cyclophilin_ABH_like cyclophilin_ABH_like: Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain

Probab=100.00  E-value=2.4e-45  Score=313.81  Aligned_cols=164  Identities=60%  Similarity=0.967  Sum_probs=148.4

Q ss_pred             cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793           11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE   90 (414)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (414)
                      |+||||+.+++++.|+|+||||.+.||+||+||++||++..+.+.  +..+|+++.||||+|+|+|||||+...++    
T Consensus         1 p~v~~di~i~~~~~G~i~ieL~~~~aP~~~~nF~~L~~~~~g~~~--~~~~Y~~~~f~Rv~~~~~iq~Gd~~~~~g----   74 (164)
T cd01926           1 PKVFFDITIGGEPAGRIVMELFADVVPKTAENFRALCTGEKGKGG--KPFGYKGSTFHRVIPDFMIQGGDFTRGNG----   74 (164)
T ss_pred             CEEEEEEeECCeeceeEEEEEeCCCCCHHHHHHHHHhcccCCCcc--cccccCCCEEEEEeCCcEEEcCCccCCCC----
Confidence            689999999999999999999999999999999999987543322  34579999999999999999999875444    


Q ss_pred             cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccch
Q psy793           91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ  170 (414)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sq  170 (414)
                                                              .++.++||..+++|...++|+.+|+|+|++.+ |++++||
T Consensus        75 ----------------------------------------~~~~~~~g~~~~~e~~~~~h~~~G~lsma~~~-~~~~~sq  113 (164)
T cd01926          75 ----------------------------------------TGGKSIYGEKFPDENFKLKHTGPGLLSMANAG-PNTNGSQ  113 (164)
T ss_pred             ----------------------------------------CCCCcccCCccCCCCccccCCCccEEEeeECC-CCCcccE
Confidence                                                    44566778888888888899899999999998 9999999


Q ss_pred             hhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCC
Q psy793          171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSG  221 (414)
Q Consensus       171 f~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g  221 (414)
                      ||||++++|+||++|+|||+|++||+||++|+++++.+++|..+|+|..||
T Consensus       114 FfIt~~~~~~Ld~~~tvFG~V~~G~dvl~~i~~~~~~~~~P~~~i~I~~cG  164 (164)
T cd01926         114 FFITTVKTPWLDGKHVVFGKVVEGMDVVKKIENVGSGNGKPKKKVVIADCG  164 (164)
T ss_pred             EEEEeCCCCccCCcccEEEEEEEcHHHHHHHHcCCCCCCCCcCCeEEEECC
Confidence            999999999999999999999999999999999998888999999999997

This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. These enzymes have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. As cyclophilins, Human hCyP-A, human cyclophilin-B (hCyP-19), S. cerevisiae Cpr1 and C. elegans Cyp-3, are inhibited by the immunosuppressive drug cyclopsporin A (CsA). CsA binds to the PPIase active site. Cyp-3. S. cerevisiae Cpr1 interacts with the Rpd3 - Sin3 complex and in addition is a component of the Set3 complex. S. cerevisiae Cpr1 has also been shown to have a role in Zpr1p nuclear transport. Human cyclophilin H associates with the [U4/U6.U5] tri-snRNP particles of the spl

>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional

Probab=100.00  E-value=7e-45  Score=315.24  Aligned_cols=170  Identities=52%  Similarity=0.870  Sum_probs=150.9

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      ...||+||||+++++++.|+|+||||.+.||+||+||++||++++..  .+....|++|.||||+++|+|||||+..+++
T Consensus        15 ~~~~~~v~~di~~~~~~~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~--~g~~~~Y~~~~fhrVi~~f~iqgGd~~~~~g   92 (186)
T PLN03149         15 NPKNPVVFFDVTIGGIPAGRIKMELFADIAPKTAENFRQFCTGEFRK--AGLPQGYKGCQFHRVIKDFMIQGGDFLKGDG   92 (186)
T ss_pred             CCCCCEEEEEEeeCCcccccEEEEEcCCCCcHHHHHHHHHHhhhccc--cCcccccCCcEEEEEcCCcEEEcCCcccCCC
Confidence            34588999999999999999999999999999999999999886521  1122349999999999999999999865555


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                  .++.++||..+++|.+.++|+.+|+|+|++.+ +++
T Consensus        93 --------------------------------------------~g~~~~~g~~f~~e~~~~~h~~~G~lsma~~g-~~s  127 (186)
T PLN03149         93 --------------------------------------------TGCVSIYGSKFEDENFIAKHTGPGLLSMANSG-PNT  127 (186)
T ss_pred             --------------------------------------------CCcccccCCccCCcccccccCCCCEEEEeeCC-CCC
Confidence                                                        45566778888888888899999999999999 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEE-echHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVR-QGFGVAREVSYVEA-ENDKPLVTCTITNSGQL  223 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~-~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l  223 (414)
                      ++||||||+.++|+||++|+|||+|+ +||++|++|+++++ ..++|..+|+|..||++
T Consensus       128 ~~sqFfIt~~~~p~Ldg~~tVFG~Vi~eG~dvl~~I~~~~~~~~~~P~~~i~I~~cG~~  186 (186)
T PLN03149        128 NGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVISECGEM  186 (186)
T ss_pred             cccEEEEECCCCCccCCCceEEEEEEECcHHHHHHHHcCCCCCCCCCcCCeEEEeCEeC
Confidence            99999999999999999999999999 79999999999998 67899999999999974

>KOG0881|consensus

Probab=100.00  E-value=5.9e-46  Score=284.04  Aligned_cols=156  Identities=46%  Similarity=0.720  Sum_probs=141.6

Q ss_pred             cccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCcccc
Q psy793            5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF   84 (414)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~   84 (414)
                      ++.-..|.|.++++.     |.|++|||-..||+||.||..|+          +.+||+|+.|||||++||||||||+. 
T Consensus         4 ~~~~q~~~V~LeTsm-----G~i~~ElY~kHaP~TC~NF~eLa----------rrgYYn~v~FHRii~DFmiQGGDPTG-   67 (164)
T KOG0881|consen    4 PPEWQPPNVTLETSM-----GKITLELYWKHAPRTCQNFAELA----------RRGYYNGVIFHRIIKDFMIQGGDPTG-   67 (164)
T ss_pred             CccCCCCeEEEeecc-----cceehhhhhhcCcHHHHHHHHHH----------hcccccceeeeehhhhheeecCCCCC-
Confidence            344556789998887     99999999999999999999999          45569999999999999999999973 


Q ss_pred             CCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCC-cccccccccceeeeccCCC
Q psy793           85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGH  163 (414)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e-~~~~~~~~~g~l~~~~~~~  163 (414)
                      .|                                            .||.|+||..|+|| ..+|+|...|.|+|||.| 
T Consensus        68 TG--------------------------------------------RGGaSIYG~kF~DEi~~dLkhTGAGILsMANaG-  102 (164)
T KOG0881|consen   68 TG--------------------------------------------RGGASIYGDKFEDEIHSDLKHTGAGILSMANAG-  102 (164)
T ss_pred             CC--------------------------------------------CCccccccchhhhhhhhhhcccchhhhhhhccC-
Confidence            34                                            77889999999998 568999999999999999 


Q ss_pred             CCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCC
Q psy793          164 PNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSG  221 (414)
Q Consensus       164 ~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g  221 (414)
                      |++|||||||||.+.|+|||+||+||||..||+|+.++..+++ ..++|+.+++|...-
T Consensus       103 PnTNgSQFFiTLAPt~~LDGKHTIFGRV~~Gm~vikr~G~v~Td~~DRPi~~~kIika~  161 (164)
T KOG0881|consen  103 PNTNGSQFFITLAPTQWLDGKHTIFGRVCSGMEVIKRMGMVETDNSDRPIDEVKIIKAY  161 (164)
T ss_pred             CCCCCceEEEEecCccccCCcceeehhhhhhHHHHHhhcceecCCCCCCccceeeEeee
Confidence            9999999999999999999999999999999999999999998 568999999998753

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2e-44  Score=298.25  Aligned_cols=145  Identities=45%  Similarity=0.729  Sum_probs=124.3

Q ss_pred             CCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCC
Q psy793           20 GEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED   99 (414)
Q Consensus        20 ~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~   99 (414)
                      .+|+.|+|+|+||++.||+||+||++||+          .+||+|+.|||||++||||||||...++.            
T Consensus         4 ~~t~~G~I~ieL~~~~aP~Tv~NF~~l~~----------~g~Ydg~~FHRVi~~FmiQgGd~~~~~g~------------   61 (158)
T COG0652           4 LETNKGDITIELYPDKAPKTVANFLQLVK----------EGFYDGTIFHRVIPGFMIQGGDPTGGDGT------------   61 (158)
T ss_pred             eeccCCCEEEEECCCcCcHHHHHHHHHHH----------cCCCCCceEEEeecCceeecCCCCCCCCC------------
Confidence            46778999999999999999999999995          55699999999999999999999865453            


Q ss_pred             CcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccc--cceeeeccCCCCCCccchhhhhcCC
Q psy793          100 ENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKF--EGQLSLANTGHPNTNNSQFFITLAP  177 (414)
Q Consensus       100 ~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~--~g~l~~~~~~~~~~~~sqf~it~~~  177 (414)
                                                      ++.   +..+++|.+...|+.  +|+|||||+++|+||+||||||+.+
T Consensus        62 --------------------------------gg~---~~~f~~E~~~~~~~~~~~G~lsMA~~g~P~t~~SQFFI~~~~  106 (158)
T COG0652          62 --------------------------------GGP---GPPFKDENFALNGDRHKRGTLSMARAGDPNSNGSQFFITVVD  106 (158)
T ss_pred             --------------------------------CCC---CCCCcccccccccccCCcceEeEcccCCcCCccCeEEEEecC
Confidence                                            333   366888877766666  9999999999999999999999999


Q ss_pred             CCCCCCcceeeEEEEechHHHHHHhccccCC-----CCccccEEEEcCC
Q psy793          178 CPHLDGKNVVFGCVRQGFGVAREVSYVEAEN-----DKPLVTCTITNSG  221 (414)
Q Consensus       178 ~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~-----~~P~~~i~I~~~g  221 (414)
                      .|+||++|+|||+|++|||+|++|++..+..     +.|..+++|.+..
T Consensus       107 ~~~Ld~~ytVFG~Vv~GmdvvdkI~~~~~~~~~~~~~~~~~~~~i~~~~  155 (158)
T COG0652         107 NPFLDGKYTVFGQVVEGMDVVDKIKNGDTDDSGYVQDVPADPVKILSVK  155 (158)
T ss_pred             CcccCCCCcEEEEEehhHHHHHHHHcCCccCCCcccCCCCCCeEEeeee
Confidence            9999999999999999999999999987632     4455666666543

>KOG0111|consensus

Probab=100.00  E-value=2.5e-44  Score=301.84  Aligned_cols=164  Identities=54%  Similarity=0.888  Sum_probs=158.6

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      ..||.||+++.|++...|||+++|..|..|.|++||..||+|+.|+|       |.|++||||||.||.||||++.++| 
T Consensus       134 ~~~pqv~~~ikig~~~~Gri~~~lrtdv~Pmtaenfr~Lctge~gfg-------ykgssfhriip~fmcqggdftn~ng-  205 (298)
T KOG0111|consen  134 MENPQVYHDIKIGEDRAGRIVMLLRTDVVPMTAENFRCLCTGEAGFG-------YKGSSFHRIIPKFMCQGGDFTNGNG-  205 (298)
T ss_pred             hhChHhhhheeecccccceEEEeecccCChhhhhhhhhhccccCccC-------ccccchhhhhhhhhccCCccccCCC-
Confidence            45899999999999999999999999999999999999999999998       9999999999999999999998877 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                 +||.|+||..|+||++.|+|.-+|+|+||++| +++|
T Consensus       206 -------------------------------------------tggksiygkkfddenf~lkht~pgtlsmansg-antn  241 (298)
T KOG0111|consen  206 -------------------------------------------TGGKSIYGKKFDDENFTLKHTMPGTLSMANSG-ANTN  241 (298)
T ss_pred             -------------------------------------------CCCcccccccccccceeeecCCCceeeccccC-CCCC
Confidence                                                       77888999999999999999999999999999 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      |||||||+..+.+|||+|+|||.|++|++||+.+++..+.++.|...|.|..||.+
T Consensus       242 gsqffict~ktdwldgkhvvfghv~eg~~vvrq~e~qgsksgkp~qkv~i~~cge~  297 (298)
T KOG0111|consen  242 GSQFFICTEKTDWLDGKHVVFGHVVEGMNVVRQVEQQGSKSGKPQQKVKIVECGEI  297 (298)
T ss_pred             CceEEEEecccccccCceeEEeeecchHHHHHHHHhccCCCCCcceEEEEEecccc
Confidence            99999999999999999999999999999999999999999999999999999986

>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain

Probab=100.00  E-value=1.9e-41  Score=284.31  Aligned_cols=143  Identities=48%  Similarity=0.726  Sum_probs=128.7

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||++.||+||+||++||++++          |+++.||||+|+|+|||||+. +++              
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----------Y~~~~f~Rvi~~f~iq~Gd~~-~~g--------------   57 (148)
T cd01927           3 HTTKGDIHIRLFPEEAPKTVENFTTHARNGY----------YNNTIFHRVIKGFMIQTGDPT-GDG--------------   57 (148)
T ss_pred             EeccccEEEEEeCCCCcHHHHHHHHHhhcCC----------cCCcEEEEEcCCcEEEecccC-CCC--------------
Confidence            5678999999999999999999999996554          999999999999999999985 233              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .++.++|+..+++|.. .++|..+|+|+|++.+ |++++||||||++++|
T Consensus        58 ------------------------------~g~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~-~~s~~SqFfIt~~~~p  106 (148)
T cd01927          58 ------------------------------TGGESIWGKEFEDEFSPSLKHDRPYTLSMANAG-PNTNGSQFFITTVATP  106 (148)
T ss_pred             ------------------------------CCCCcccCCccccccccccCcCCCeEEEEeeCC-CCCCCceEEEEcCCCc
Confidence                                          4555677888888864 7889889999999998 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEc
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITN  219 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~  219 (414)
                      +||++|+|||+|++||++|++|+++++ .+++|..+|+|.+
T Consensus       107 ~Ldg~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~  147 (148)
T cd01927         107 WLDNKHTVFGRVVKGMDVVQRIENVKTDKNDRPYEDIKIIN  147 (148)
T ss_pred             ccCCCceEEEEEEcCHHHHHHHHcCCCCCCCCCcCCeEEEe
Confidence            999999999999999999999999997 5689999999975

This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.

>cd01923 cyclophilin_RING cyclophilin_RING: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a modified RING finger domain

Probab=100.00  E-value=3.2e-41  Score=286.32  Aligned_cols=151  Identities=44%  Similarity=0.675  Sum_probs=134.8

Q ss_pred             eeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCCc
Q psy793           22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN  101 (414)
Q Consensus        22 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~  101 (414)
                      |+.|+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|+|||||+. +++               
T Consensus         6 T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~rv~~~~~iq~Gd~~-~~g---------------   59 (159)
T cd01923           6 TNKGDLNLELHCDKAPKACENFIKLCKKG----------YYDGTIFHRSIRNFMIQGGDPT-GTG---------------   59 (159)
T ss_pred             EccccEEEEEeCCCChHHHHHHHHHHhcC----------ccCCcEEEEEeCCcEEEecccC-CCC---------------
Confidence            56699999999999999999999999654          5999999999999999999985 233               


Q ss_pred             ccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCCC
Q psy793          102 FKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH  180 (414)
Q Consensus       102 ~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~  180 (414)
                                                   .++.++||..+++|. ..++|+.+|+|+|++++ +++++||||||++++|+
T Consensus        60 -----------------------------~~~~~~~g~~~~~E~~~~~~h~~~G~v~ma~~~-~~s~~sqFfIt~~~~~~  109 (159)
T cd01923          60 -----------------------------RGGESIWGKPFKDEFKPNLSHDGRGVLSMANSG-PNTNGSQFFITYRSCKH  109 (159)
T ss_pred             -----------------------------CCCccccCCccCcccccCcCcCCCcEEEEeeCC-CCCcccEEEEECCCCcc
Confidence                                         456677888888884 46788899999999999 99999999999999999


Q ss_pred             CCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCC
Q psy793          181 LDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNED  228 (414)
Q Consensus       181 ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~  228 (414)
                      ||++|+|||+|++||++|++|+++++ .+++|+.+|+|.+|.++..+++
T Consensus       110 Ld~~~~vFG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~~~~i~~dpf~  158 (159)
T cd01923         110 LDGKHTVFGRVVGGLETLEAMENVPDPGTDRPKEEIKIEDTSVFVDPFE  158 (159)
T ss_pred             cCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEeEEEeCCCC
Confidence            99999999999999999999999987 5789999999999998876543

This group includes the nuclear proteins, Human hCyP-60 and Caenorhabditis elegans MOG-6 which, compared to the archetypal cyclophilin Human cyclophilin A exhibit reduced peptidylprolyl cis- trans isomerase activity and lack a residue important for cyclophilin binding. Human hCyP-60 has been shown to physically interact with the proteinase inhibitor peptide eglin c and; C. elegans MOG-6 to physically interact with MEP-1, a nuclear zinc finger protein. MOG-6 has been shown to function in germline sex determination.

>cd01928 Cyclophilin_PPIL3_like Cyclophilin_PPIL3_like

Probab=100.00  E-value=2.9e-41  Score=284.49  Aligned_cols=144  Identities=49%  Similarity=0.755  Sum_probs=129.3

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||++.||+||+||++||++++          |+|+.||||+|+|+|||||+. +++              
T Consensus         6 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g~----------Y~~~~f~rv~~~f~iq~Gd~~-~~g--------------   60 (153)
T cd01928           6 HTNLGDIKIELFCDDCPKACENFLALCASGY----------YNGCIFHRNIKGFMVQTGDPT-GTG--------------   60 (153)
T ss_pred             EEccccEEEEEcCCCCcHHHHHHHHHHhcCc----------cCCcEEEEeCCCCEEEccccC-CCC--------------
Confidence            4667999999999999999999999996654          999999999999999999985 233              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .++.++||..+++|.. .++|+++|+|+|++++ |++++||||||++++|
T Consensus        61 ------------------------------~g~~~~~~~~~~~e~~~~~~~~~~G~v~ma~~~-~~~~~SqFfI~~~~~~  109 (153)
T cd01928          61 ------------------------------KGGESIWGKKFEDEFRETLKHDSRGVVSMANNG-PNTNGSQFFITYAKQP  109 (153)
T ss_pred             ------------------------------CCCCccCCCccccccccCCCcCCCcEEEEeeCC-CCCcccEEEEEeCCCc
Confidence                                          4455677888888864 5788899999999998 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcC
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNS  220 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~  220 (414)
                      +||++|+|||+|++||++|++|+++++ ..++|..+|+|.++
T Consensus       110 ~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~~P~~~i~I~~~  151 (153)
T cd01928         110 HLDGKYTVFGKVIDGFETLDTLEKLPVDKKYRPLEEIRIKDV  151 (153)
T ss_pred             ccCCCceEEEEEEeCHHHHHHHHcCCCCCCCCCcCCeEEEEe
Confidence            999999999999999999999999998 57899999999876

Proteins similar to Human cyclophilin-like peptidylprolyl cis- trans isomerase (PPIL3). Members of this family lack a key residue important for cyclosporin binding: the tryptophan residue corresponding to W121 in human hCyP-18a; most members have a histidine at this position. The exact function of the protein is not known.

>cd01922 cyclophilin_SpCYP2_like cyclophilin_SpCYP2_like: cyclophilin 2-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to Schizosaccharomyces pombe cyp-2

Probab=100.00  E-value=3.5e-41  Score=281.73  Aligned_cols=142  Identities=49%  Similarity=0.798  Sum_probs=127.7

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||.+.||+||+||++||+++          ||+++.||||+|+|+|||||+. +++              
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Y~~~~f~Rvi~~f~iq~Gd~~-~~g--------------   57 (146)
T cd01922           3 ETTMGEITLELYWNHAPKTCKNFYELAKRG----------YYNGTIFHRLIKDFMIQGGDPT-GTG--------------   57 (146)
T ss_pred             EeccccEEEEEcCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEcCCcEEEecccC-CCC--------------
Confidence            577899999999999999999999999655          4999999999999999999985 233              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .++.++||..+++|. ..++|+.+|+|+|++.+ |++++||||||++++|
T Consensus        58 ------------------------------~~~~~~~~~~~~~e~~~~~~h~~~G~l~ma~~~-~~s~~sqFfIt~~~~p  106 (146)
T cd01922          58 ------------------------------RGGASIYGKKFEDEIHPELKHTGAGILSMANAG-PNTNGSQFFITLAPTP  106 (146)
T ss_pred             ------------------------------CCcccccCCCcccccccCcCCCCCeEEEEeeCC-CCCCccEEEEEcCCCc
Confidence                                          345567777788874 56889889999999998 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEE
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTIT  218 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~  218 (414)
                      +||++|+|||+|++||+||++|+++++.+++|..+|+|.
T Consensus       107 ~Ld~~~tvFG~V~~G~dvl~~I~~~~~~~~~P~~~I~I~  145 (146)
T cd01922         107 WLDGKHTIFGRVSKGMKVIENMVEVQTQTDRPIDEVKIL  145 (146)
T ss_pred             ccCCCCCEEEEEEcCHHHHHHHHhCCCCCCCcCCCeEEe
Confidence            999999999999999999999999998878999999986

These proteins bind their respective SNW chromatin binding protein in autologous systems, in a CsA independent manner indicating interaction with a surface outside the PPIase active site. SNW proteins play a basic and broad range role in signaling.

>cd01921 cyclophilin_RRM cyclophilin_RRM: cyclophilin-type peptidylprolyl cis- trans isomerase domain occuring with a C-terminal RNA recognition motif domain (RRM)

Probab=100.00  E-value=8.4e-41  Score=286.10  Aligned_cols=160  Identities=36%  Similarity=0.515  Sum_probs=133.3

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||.+.||+||+||++||+++          ||+|+.||||+++|||||||+. .++.++.++++...   
T Consensus         3 ~Ts~G~i~ieL~~~~aP~t~~nF~~L~~~~----------~Y~g~~fhrvi~~f~iQgGd~~-~~g~~~~~~~~~~~---   68 (166)
T cd01921           3 ETTLGDLVIDLFTDECPLACLNFLKLCKLK----------YYNFCLFYNVQKDFIAQTGDPT-GTGAGGESIYSQLY---   68 (166)
T ss_pred             EeccCCEEEEEcCCCCCHHHHHHHHHHhcC----------CcCCCEEEEEeCCceEEECCcC-CCCCCCcccccccc---
Confidence            577899999999999999999999999655          4999999999999999999986 34544444322100   


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCC-C
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAP-C  178 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~-~  178 (414)
                                                        ...+..+++|. ..++|+++|+|+||+.+ +++++||||||+++ +
T Consensus        69 ----------------------------------~~~~~~~~~e~~~~~~h~~~G~l~ma~~~-~~~~~SQFfIt~~~~~  113 (166)
T cd01921          69 ----------------------------------GRQARFFEPEILPLLKHSKKGTVSMVNAG-DNLNGSQFYITLGENL  113 (166)
T ss_pred             ----------------------------------cccCcccCcccCCccccCCceEEEEeECC-CCCccceEEEEcCCCC
Confidence                                              01123455554 46789899999999999 89999999999975 8


Q ss_pred             CCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCc
Q psy793          179 PHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDW  229 (414)
Q Consensus       179 p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~  229 (414)
                      |+||++|+|||+|++||++|++|+.+++ .+++|..+|+|..|+++..+++.
T Consensus       114 ~~Ldg~~tvFG~Vi~G~dvv~~I~~~~~~~~~~P~~~i~I~~~~i~~~pf~~  165 (166)
T cd01921         114 DYLDGKHTVFGQVVEGFDVLEKINDAIVDDDGRPLKDIRIKHTHILDDPFPD  165 (166)
T ss_pred             cccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCCCCeEEEEEEEECCCCCC
Confidence            9999999999999999999999999988 57899999999999999877553

This subfamily of the cyclophilin domain family contains a number of eukaryotic cyclophilins having the RRM domain including the nuclear proteins: human hCyP-57, Arabidopsis thaliana AtCYP59, Caenorhabditis elegans CeCyP-44 and Paramecium tetrurelia Kin241. The Kin241 protein has been shown to have a role in cell morphogenesis.

>KOG0883|consensus

Probab=100.00  E-value=1.4e-40  Score=300.73  Aligned_cols=150  Identities=43%  Similarity=0.661  Sum_probs=138.4

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      .|+.|.+-|||+.|.+|++|+||++||..          +||+|+.|||.|++||||||||+ +.|              
T Consensus       283 ~Tn~G~lNlELhcd~~P~aceNFI~lc~~----------gYYnnt~FHRsIrnFmiQGGDPT-GTG--------------  337 (518)
T KOG0883|consen  283 VTNHGPLNLELHCDYAPRACENFITLCKN----------GYYNNTIFHRSIRNFMIQGGDPT-GTG--------------  337 (518)
T ss_pred             eccCCceeeEeecCcchHHHHHHHHHHhc----------ccccchHHHHHHHHHeeeCCCCC-CCC--------------
Confidence            35679999999999999999999999954          55999999999999999999997 344              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .||.|+||.+|.||. ..+.|+.+|+|||||+| |++||||||||.++|-
T Consensus       338 ------------------------------~GGeSiWgKpFkDEf~~~l~H~gRGvlSMANsG-pnTNgSQFFItyrsck  386 (518)
T KOG0883|consen  338 ------------------------------RGGESIWGKPFKDEFCSNLSHDGRGVLSMANSG-PNTNGSQFFITYRSCK  386 (518)
T ss_pred             ------------------------------CCCccccCCccccccCCCCCcCCcceEeeccCC-CCCCCceEEEEecchh
Confidence                                          788899999999995 67899999999999999 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCC
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLN  226 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~  226 (414)
                      |||++||+||||+.|++++.+|+.+++ +.++|..+|+|...-++..+
T Consensus       387 hLd~KHTIFGrvVGGldtL~amEnve~d~~DrP~e~I~i~~~~VFVdP  434 (518)
T KOG0883|consen  387 HLDNKHTIFGRVVGGLDTLTAMENVETDEKDRPKEEIKIEDAIVFVDP  434 (518)
T ss_pred             hccccceeeeeeeccHHHHHHHhcCCCCCCCCcccceEEeeeEEeeCc
Confidence            999999999999999999999999998 67999999999998777654

>KOG0884|consensus

Probab=100.00  E-value=3e-40  Score=251.18  Aligned_cols=146  Identities=47%  Similarity=0.732  Sum_probs=132.7

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      -|+.|+|.||||.+.+|++|+||+.||...+          |++++|||-+++||+|+|||.. .|              
T Consensus         6 ht~~gdikiev~~e~tpktce~~l~~~~~~~----------~n~~~~~~~~~~f~v~~~~~~~-tg--------------   60 (161)
T KOG0884|consen    6 HTDVGDIKIEVFCERTPKTCENFLALCASDY----------YNGCIFHRNIKGFMVQTGDPTH-TG--------------   60 (161)
T ss_pred             eeccCcEEEEEEecCChhHHHHHHHHhhhhh----------ccceeecCCCCCcEEEeCCCCC-CC--------------
Confidence            3566999999999999999999999997776          9999999999999999999963 33              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .||.|+||..|+||. .-++|+.+|+++||+.| |++|+||||||.+..|
T Consensus        61 ------------------------------rgg~siwg~~fede~~~~lkh~~rg~vsmanng-p~tn~sqffity~kq~  109 (161)
T KOG0884|consen   61 ------------------------------RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQP  109 (161)
T ss_pred             ------------------------------CCCccccCCcchHHHHHHHhhccceeEEcccCC-CCCCCceEEEEecCCC
Confidence                                          788899999999995 45899999999999999 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhccccC--CCCccccEEEEcCCC
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEAE--NDKPLVTCTITNSGQ  222 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~--~~~P~~~i~I~~~g~  222 (414)
                      |||-+|||||+||+|++.+++|+.+++.  ..+|..++.|.+...
T Consensus       110 hldmkytvfgkvidg~etldele~l~v~~ktyrpl~~~~ik~iti  154 (161)
T KOG0884|consen  110 HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITI  154 (161)
T ss_pred             ccceeEeeeeeeccchhhHHHHhhcccCccccccchheeeeeeEE
Confidence            9999999999999999999999999983  478998888876543

>PRK10903 peptidyl-prolyl cis-trans isomerase A (rotamase A); Provisional

Probab=100.00  E-value=7.7e-39  Score=278.09  Aligned_cols=155  Identities=30%  Similarity=0.462  Sum_probs=128.3

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      ..++++|.|+++     .|+|+||||++.||+||+||++||+.          +||+|+.||||+|+|||||||+....+
T Consensus        25 ~~~~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Ydg~~FhRvi~~f~iQgG~~~~~~~   89 (190)
T PRK10903         25 AKGDPHVLLTTS-----AGNIELELNSQKAPVSVKNFVDYVNS----------GFYNNTTFHRVIPGFMIQGGGFTEQMQ   89 (190)
T ss_pred             cCCCcEEEEEec-----cccEEEEEeCCCCcHHHHHHHHHHhc----------CCcCCcEEEEEeCCceEEeCCcCCCCC
Confidence            346777877654     49999999999999999999999954          459999999999999999998753211


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                     ...++..+.+|.....|+.+|+|+|++.+.|++
T Consensus        90 -----------------------------------------------~~~~~~~~~~e~~~~l~~~~G~lama~~~~~~s  122 (190)
T PRK10903         90 -----------------------------------------------QKKPNPPIKNEADNGLRNTRGTIAMARTADKDS  122 (190)
T ss_pred             -----------------------------------------------CCCCCCcccCcccccCcCCCcEEEeCCCCCCCC
Confidence                                                           011234466665444566899999999877999


Q ss_pred             ccchhhhhcCCCCCCCC-----cceeeEEEEechHHHHHHhccccC-----CCCccccEEEEcCCCC
Q psy793          167 NNSQFFITLAPCPHLDG-----KNVVFGCVRQGFGVAREVSYVEAE-----NDKPLVTCTITNSGQL  223 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~-----~~~vfG~V~~G~~vv~~i~~~~~~-----~~~P~~~i~I~~~g~l  223 (414)
                      ++||||||++++|+||+     +|||||+|++||+||++|++++++     .++|..+|.|.+|.++
T Consensus       123 n~SQFfIt~~~~~~ld~~~~dg~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~  189 (190)
T PRK10903        123 ATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSAKVL  189 (190)
T ss_pred             cccEEEEECcCcccccCCccCCCccEEEEEecCHHHHHHHHcCCCCCCCCCCCcccCCeEEEEEEEe
Confidence            99999999999999984     899999999999999999999884     3689999999998654

>KOG0882|consensus

Probab=100.00  E-value=1.1e-39  Score=300.97  Aligned_cols=154  Identities=43%  Similarity=0.644  Sum_probs=139.3

Q ss_pred             cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793           11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE   90 (414)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (414)
                      +.+.=+-.|.-|+.|+|.|.||++.||+||+||...|+.+          ||+|+.|||||+|||||+|||. ++|    
T Consensus       400 ~~~l~~~aiihtt~gdi~~kl~p~ecpktvenf~th~rng----------yy~~~~fhriik~fmiqtgdp~-g~g----  464 (558)
T KOG0882|consen  400 NKLLGKAAIIHTTQGDIHIKLYPEECPKTVENFTTHSRNG----------YYDNHTFHRIIKGFMIQTGDPL-GDG----  464 (558)
T ss_pred             ceecccceEEEecccceEEEecccccchhhhhhhccccCc----------cccCcchHHhhhhheeecCCCC-CCC----
Confidence            3444455566788899999999999999999999999554          5999999999999999999997 455    


Q ss_pred             cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccc
Q psy793           91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNS  169 (414)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~s  169 (414)
                                                              +||.|+||..|+||. ..|+|+++.+|||||+| ||+|||
T Consensus       465 ----------------------------------------tggesiwg~dfedefh~~lrhdrpft~smanag-~ntngs  503 (558)
T KOG0882|consen  465 ----------------------------------------TGGESIWGKDFEDEFHPNLRHDRPFTVSMANAG-PNTNGS  503 (558)
T ss_pred             ----------------------------------------CCCcccccccchhhcCcccccCCCceEEecccC-CCCCCc
Confidence                                                    778889999999995 67999999999999999 999999


Q ss_pred             hhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcC
Q psy793          170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNS  220 (414)
Q Consensus       170 qf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~  220 (414)
                      |||||+.++|||||+|||||||+.||+||.+|+++.+ ..++|.+++.|.+.
T Consensus       504 qffit~~~tpwld~khtvfgrv~~gm~vvqri~~v~t~k~drp~e~v~iini  555 (558)
T KOG0882|consen  504 QFFITTVPTPWLDGKHTVFGRVTAGMDVVQRIEQVKTDKYDRPYEDVKIINI  555 (558)
T ss_pred             eEEEEecCccccCCcceeEEEEecchhHHhHhhhcccCcCCCCCCceeEEEE
Confidence            9999999999999999999999999999999999998 57899999999874

>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16

Probab=100.00  E-value=2.2e-38  Score=271.98  Aligned_cols=158  Identities=37%  Similarity=0.587  Sum_probs=136.1

Q ss_pred             cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793           11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE   90 (414)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (414)
                      -.|.|+++     .|+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|+|||||+. +++    
T Consensus         6 ~~v~i~Ts-----~G~i~ieL~~~~~P~t~~nF~~L~~~~----------~Y~~~~f~Rvi~~f~iQgGd~~-~~g----   65 (171)
T cd01925           6 GKVILKTT-----AGDIDIELWSKEAPKACRNFIQLCLEG----------YYDNTIFHRVVPGFIIQGGDPT-GTG----   65 (171)
T ss_pred             cEEEEEEc-----cccEEEEEeCCCChHHHHHHHHHHhcC----------CCCCCEEEEEcCCcEEEccccC-CCC----
Confidence            45666554     599999999999999999999999655          4999999999999999999985 233    


Q ss_pred             cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccc
Q psy793           91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNS  169 (414)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~s  169 (414)
                                                              .++.++||..+++|.. .++|+.+|+|+|++.+ +++++|
T Consensus        66 ----------------------------------------~g~~s~~g~~~~~E~~~~~~~~~~G~l~ma~~g-~~s~~s  104 (171)
T cd01925          66 ----------------------------------------TGGESIYGEPFKDEFHSRLRFNRRGLVGMANAG-DDSNGS  104 (171)
T ss_pred             ----------------------------------------ccCcccCCCccCcccccCcCCCCCcEEEECcCC-CCCccc
Confidence                                                    4566777888888754 5678899999999999 899999


Q ss_pred             hhhhhcCCCCCCCCcceeeEEEEe-chHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCc
Q psy793          170 QFFITLAPCPHLDGKNVVFGCVRQ-GFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDW  229 (414)
Q Consensus       170 qf~it~~~~p~ld~~~~vfG~V~~-G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~  229 (414)
                      |||||++++|+||++|+|||+|+. +++++++|+.+++ .+++|..+|+|.+|+++..+++.
T Consensus       105 qFfIt~~~~~~ldg~~tvFG~V~g~~~~~v~~i~~~~~~~~~~P~~~i~I~~~~i~~~pf~~  166 (171)
T cd01925         105 QFFFTLDKADELNNKHTLFGKVTGDTIYNLLKLAEVETDKDERPVYPPKITSVEVLENPFDD  166 (171)
T ss_pred             EEEEEcCCCcccCCCceEEEEEEECcHHHHHHHhcCCcCCCCCcCCCeEEEEEEEEcCCchh
Confidence            999999999999999999999993 5788999999998 56899999999999888765443

C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.

>cd01920 cyclophilin_EcCYP_like cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E

Probab=100.00  E-value=6e-38  Score=265.15  Aligned_cols=142  Identities=31%  Similarity=0.465  Sum_probs=119.2

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+|+||++.||+||+||++||+.+          ||+++.||||+|+|||||||+....+              
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQ~Gd~~~~~~--------------   58 (155)
T cd01920           3 QTSLGDIVVELYDDKAPITVENFLAYVRKG----------FYDNTIFHRVISGFVIQGGGFTPDLA--------------   58 (155)
T ss_pred             EecceeEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCcEEEeCCCCCCCC--------------
Confidence            467899999999999999999999999554          59999999999999999999864221              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH  180 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~  180 (414)
                                                       ...++..+.+|.....|+.+|+|+||+.+.|++++||||||++++|+
T Consensus        59 ---------------------------------~~~~~~~~~~e~~~~~~~~~G~v~ma~~~~~~s~~SqFfI~~~~~~~  105 (155)
T cd01920          59 ---------------------------------QKETLKPIKNEAGNGLSNTRGTIAMARTNAPDSATSQFFINLKDNAS  105 (155)
T ss_pred             ---------------------------------ccccCCcccCcccccccCCceEEEECCCCCCCCccceEEEECCCchh
Confidence                                             01123445566544456689999999987799999999999999999


Q ss_pred             CCC-----cceeeEEEEechHHHHHHhccccCC-----CCccccEEEEc
Q psy793          181 LDG-----KNVVFGCVRQGFGVAREVSYVEAEN-----DKPLVTCTITN  219 (414)
Q Consensus       181 ld~-----~~~vfG~V~~G~~vv~~i~~~~~~~-----~~P~~~i~I~~  219 (414)
                      ||+     +|||||+|++||++|++|+.+++..     +.|..+|+|.+
T Consensus       106 ld~~~~~~~ytvFG~V~eG~dvl~~I~~~~~~~~~~~~~~p~~~v~i~~  154 (155)
T cd01920         106 LDYQNEQWGYTVFGEVTEGMDVVDKIAGVETYSFGSYQDVPVQDVIIES  154 (155)
T ss_pred             cCCcccCCCccEEEEEecCHHHHHHHHcCCccCCCCcCCCcCCCeEEEE
Confidence            995     7999999999999999999999843     58888888865

coli cyclophilin A and Streptomyces antibioticus SanCyp18. Compared to the archetypal cyclophilin Human cyclophilin A, these have reduced affinity for cyclosporin A. E. coli cyclophilin A has a similar peptidylprolyl cis- trans isomerase activity to the human cyclophilin A. Most members of this subfamily contain a phenylalanine residue at the position equivalent to Human cyclophilin W121, where a tyrptophan has been shown to be important for cyclophilin binding.

>PRK10791 peptidyl-prolyl cis-trans isomerase B (rotamase B); Provisional

Probab=100.00  E-value=8.1e-38  Score=265.82  Aligned_cols=144  Identities=28%  Similarity=0.441  Sum_probs=118.5

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      .|+.|+|+|+||++.||+||+||++||+.+          ||+++.||||+|+|||||||+..+.+              
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~L~~~g----------~Yd~~~fhRvi~~f~iQgGd~~~~~~--------------   60 (164)
T PRK10791          5 HTNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPGMK--------------   60 (164)
T ss_pred             EEccccEEEEEeCCCCcHHHHHHHHHHhcC----------CcCCcEEEEEecCcEEEeCCcCCCCC--------------
Confidence            467799999999999999999999999655          49999999999999999998753211              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH  180 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~  180 (414)
                                                       ...++..+++|.....++.+|+|+||+.+.|++++||||||+.++|+
T Consensus        61 ---------------------------------~~~~~~~~~~e~~~~~~~~~G~lsma~~~~p~s~~SQFfI~~~~~~~  107 (164)
T PRK10791         61 ---------------------------------QKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDF  107 (164)
T ss_pred             ---------------------------------cCCCCCCcCCcccccccCCCcEEEECCCCCcCCccceEEEEecCchh
Confidence                                             01123445555332334479999999987699999999999999887


Q ss_pred             CC-------C-cceeeEEEEechHHHHHHhccccCC-----CCccccEEEEcCC
Q psy793          181 LD-------G-KNVVFGCVRQGFGVAREVSYVEAEN-----DKPLVTCTITNSG  221 (414)
Q Consensus       181 ld-------~-~~~vfG~V~~G~~vv~~i~~~~~~~-----~~P~~~i~I~~~g  221 (414)
                      ||       + +|||||+|++||++|++|+++++..     ++|..+|+|.++.
T Consensus       108 ld~~~~~~d~~~~tvFG~V~eG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~  161 (164)
T PRK10791        108 LNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIESVT  161 (164)
T ss_pred             hcccccccCCCCccEEEEEecCHHHHHHHHcCcCCCCCccCCCcCCCeEEEEEE
Confidence            76       3 7999999999999999999999843     6899999999874

>KOG0865|consensus

Probab=100.00  E-value=2.8e-37  Score=257.68  Aligned_cols=163  Identities=57%  Similarity=0.895  Sum_probs=152.6

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceE---EeccceeccCCccccC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR---IIPQFMIQGGDITNFN   85 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~r---v~~~~~iq~G~~~~~~   85 (414)
                      .||.||||++++++++|+++++||.|..|+|++||..||+|..+.+       |.+..|||   .+++||+||||.+..+
T Consensus         2 ~~~~vf~d~~~~~~p~gr~~~~l~ad~~Pktaenf~al~tgekg~~-------yk~s~fhr~~~~~~~fm~qggDft~hn   74 (167)
T KOG0865|consen    2 VNPTVFFDIAIDGEPLGRIVFELFADKIPKTAENFRALCTGEKGFG-------YKGSCFHRLIPIIPGFMCQGGDFTCHN   74 (167)
T ss_pred             CCCeeeeeeeecCccccccceecccccCcchHhhhhhcccCCCccc-------cccchhhhccccccceeeccCcccccC
Confidence            4799999999999999999999999999999999999999887776       99999999   3347999999998777


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            ++|.|+|++.|+||++.++|..+|+|+||+.+ |+
T Consensus        75 g--------------------------------------------tggkSiy~ekF~DenFilkhtgpGiLSmaNag-pn  109 (167)
T KOG0865|consen   75 G--------------------------------------------TGGKSIYGEKFDDENFILKHTGPGILSMANAG-PN  109 (167)
T ss_pred             C--------------------------------------------ccceEecccccCCcCcEEecCCCCeeehhhcC-CC
Confidence            7                                            66778889999999999999999999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      +++||||||+..+.||||+++|||+|.+||+++++++.....++.|...|.|.+||.+
T Consensus       110 tngsqffictaktewLdgkhVVfGkv~eGm~iv~a~e~~gs~~gk~~~~i~i~dcg~l  167 (167)
T KOG0865|consen  110 TNGSQFFICTAKTEWLDGKHVVFGKVKEGMDIVEAMERFGSRNGKTSKKITIADCGQL  167 (167)
T ss_pred             ccccEEEEEccccccccCceeEcCceEcccchhhhhhccCCcCCcccccEEEecCCcC
Confidence            9999999999999999999999999999999999999998899999999999999975

>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40

Probab=100.00  E-value=2.6e-36  Score=259.37  Aligned_cols=149  Identities=30%  Similarity=0.423  Sum_probs=112.4

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      .|+.|+|+|+||++.||+||+||++||+          .+||+++.||||+++|||||||+..... ++...  ......
T Consensus         3 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~----------~g~Ydg~~FhRVi~~fviQgGdp~~~~~-~~~~~--~~~~~~   69 (176)
T cd01924           3 ATDNGTITIVLDGYNAPVTAGNFVDLVE----------RGFYDGMEFHRVEGGFVVQTGDPQGKNP-GFPDP--ETGKSR   69 (176)
T ss_pred             ccccceEEEEEcCCCCCHHHHHHHHHHH----------hCCcCCCEEEEecCCcEEEecCCCCCCC-Ccccc--cccccc
Confidence            4788999999999999999999999995          4559999999999999999999864321 11000  000001


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcC-----CCCcccccccccceeeeccCCC-CCCccchhhhh
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCF-----EDENFKLKHKFEGQLSLANTGH-PNTNNSQFFIT  174 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~-----~~e~~~~~~~~~g~l~~~~~~~-~~~~~sqf~it  174 (414)
                      ..+.++             ..        ...+.++|+..+     .++...++|+++|+|+||+.++ |++++||||||
T Consensus        70 ~~p~e~-------------~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~laMa~~~~~~ns~~SQFfI~  128 (176)
T cd01924          70 TIPLEI-------------KP--------EGQKQPVYGKTLEEAGRYDEQPVLPFNAFGAIAMARTEFDPNSASSQFFFL  128 (176)
T ss_pred             ccccee-------------cc--------cCCCCCccCcccccccccccccccccCCCCeEEEccCCCCCCCccceEEEE
Confidence            111111             00        022334555544     2455667888999999999886 59999999999


Q ss_pred             cC-------CCCCCCCcceeeEEEEechHHHHHHhc
Q psy793          175 LA-------PCPHLDGKNVVFGCVRQGFGVAREVSY  203 (414)
Q Consensus       175 ~~-------~~p~ld~~~~vfG~V~~G~~vv~~i~~  203 (414)
                      ++       ++|+||++|||||+|++||+||++|+.
T Consensus       129 ~~~~~~~~~~~~~Ldg~ytVFG~VveG~dvl~~I~~  164 (176)
T cd01924         129 LKDNELTPSRNNVLDGRYAVFGYVTDGLDILRELKV  164 (176)
T ss_pred             eccccccCCCCCccCCCceEEEEEecCHHHHHhhcC
Confidence            99       799999999999999999999999976

Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.

>cd00317 cyclophilin cyclophilin: cyclophilin-type peptidylprolyl cis- trans isomerases

Probab=100.00  E-value=1.3e-34  Score=244.38  Aligned_cols=141  Identities=52%  Similarity=0.868  Sum_probs=123.2

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      .|+.|+|+|+||++.||++|+||++||++++          |+++.||||+|+++|||||+.....              
T Consensus         3 ~T~~G~i~IeL~~~~~P~~~~nF~~l~~~~~----------Y~~~~f~rv~~~~~iq~Gd~~~~~~--------------   58 (146)
T cd00317           3 DTTKGRIVIELYGDEAPKTVENFLSLARGGF----------YDGTTFHRVIPGFMIQGGDPTGTGG--------------   58 (146)
T ss_pred             EeccCcEEEEEcCCCChHHHHHHHHHHhcCC----------cCCCEEEEEeCCCeEEECCCCCCCC--------------
Confidence            4566999999999999999999999997665          9999999999999999999864322              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCccccc-ccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK-HKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~-~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .+  +.++..+++|..... |+++|+|+|++.+ +++++|||||++.++|
T Consensus        59 ------------------------------~~--~~~~~~~~~E~~~~~~~~~~G~v~~~~~~-~~~~~sqF~Itl~~~~  105 (146)
T cd00317          59 ------------------------------GG--SGPGYKFPDENFPLKYHHRRGTLSMANAG-PNTNGSQFFITTAPTP  105 (146)
T ss_pred             ------------------------------CC--CcCCCccCCccccCcCcCCCcEEEEeeCC-CCCcccEEEEECCCCc
Confidence                                          00  234566777765554 7899999999998 7899999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEE
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTIT  218 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~  218 (414)
                      +||++|+|||+|++||++|++|...++. +++|..+|+|.
T Consensus       106 ~ld~~~~vfG~V~~G~~vl~~I~~~~~~~~~~P~~~i~I~  145 (146)
T cd00317         106 HLDGKHTVFGKVVEGMDVVDKIERGDTDENGRPIKPVTIS  145 (146)
T ss_pred             ccCCCceEEEEEeCCHHHHHHHHcCCCCCCCcCcCceEEe
Confidence            9999999999999999999999999984 88999999986

This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug cyclosporin (CsA). Immunosuppression in vertebrates is believed to be the result of the cyclophilin A-cyclosporin protein drug complex binding to and inhibiting the protein-phosphatase calcineurin. PPIase is an enzyme which accelerates protein folding by catalyzing the cis-trans isomerization of the peptide bonds preceding proline residues. Cyclophilins are a diverse family in terms of function and have been implicated in protein folding processes which depend on catalytic /chaperone-like activities. This group contains human cyclophilin 40, a co-chaperone of the hsp90 chaperone system; human cyclophilin A, a chaperone in the HIV-1 infectious process and; human cyclophilin H, a component of the U4/U6 snRNP

>PF00160 Pro_isomerase: Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD; InterPro: IPR002130 Cyclophilin [] is the major high-affinity binding protein in vertebrates for the immunosuppressive drug cyclosporin A (CSA), but is also found in other organisms

Probab=100.00  E-value=4.7e-34  Score=243.55  Aligned_cols=152  Identities=47%  Similarity=0.773  Sum_probs=127.6

Q ss_pred             EEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCcccc
Q psy793           14 FLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIY   93 (414)
Q Consensus        14 ~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~   93 (414)
                      ||++.+++  .|+|+||||++.||++|+||++||+.++          |+|+.||||+|+++||||++...... +    
T Consensus         1 ~~~i~t~~--~G~i~ieL~~~~aP~~~~nF~~l~~~~~----------y~g~~f~ri~~~~~i~~G~~~~~~~~-~----   63 (155)
T PF00160_consen    1 FVDIETSG--LGRIVIELFGDEAPKTVENFLRLCTSGF----------YDGTKFHRIIPNFVIQGGDPTGNGGY-G----   63 (155)
T ss_dssp             EEEEEETT--EEEEEEEEETTTSHHHHHHHHHHHHTTS----------STTEBEEEEETTTEEEESSTTTSSSS-T----
T ss_pred             CEEEEeCC--ccCEEEEEeCCCCcHHHHhhehhhcccc----------cCCceeecccccceeeeeeccCCCCc-c----
Confidence            67777744  8999999999999999999999997554          99999999999999999998643220 0    


Q ss_pred             CCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc--cccccccceeeeccCC-CCCCccch
Q psy793           94 GPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF--KLKHKFEGQLSLANTG-HPNTNNSQ  170 (414)
Q Consensus        94 ~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~--~~~~~~~g~l~~~~~~-~~~~~~sq  170 (414)
                                                           ... ...+..+++|..  .+.| .+|+|+|++.+ ++++++||
T Consensus        64 -------------------------------------~~~-~~~~~~~~~E~~~~~~~~-~~G~v~~~~~~~~~~~~~sq  104 (155)
T PF00160_consen   64 -------------------------------------RED-STGGEPIPDEFNPSLLKH-RRGLVSMARSGKDPNSNGSQ  104 (155)
T ss_dssp             -------------------------------------SEE-BTTBSCBSSSGBTTSSSS-STTEEEEEBSSSSTTEBSSE
T ss_pred             -------------------------------------ccc-ccCccccccccccccccc-cceeeeecccccCCCCCCce
Confidence                                                 001 222445777763  4555 89999999885 58899999


Q ss_pred             hhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCC
Q psy793          171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ  222 (414)
Q Consensus       171 f~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~  222 (414)
                      |||++.++|+||++|+|||+|++||++|++|+..++.. +|..+|+|.+||+
T Consensus       105 F~I~l~~~~~ld~~~~vfG~V~~G~~vl~~i~~~~~~~-~p~~~v~I~~cgv  155 (155)
T PF00160_consen  105 FFITLSDAPHLDGKYTVFGRVIEGMDVLDKIEAGPTDE-RPKQDVTISSCGV  155 (155)
T ss_dssp             EEEESSCGGGGTTTSEEEEEEEEHHHHHHHHHTSBBTT-EBSSTEEEEEEEE
T ss_pred             EEeeccCCCccccceeeeeEEehhHHHHHHHHCCCCCC-ccCCCeEEEEeEC
Confidence            99999999999999999999999999999999998876 9999999999974

It exhibits a peptidyl-prolyl cis-trans isomerase activity (5.2.1.8 from EC) (PPIase or rotamase). PPIase is an enzyme that accelerates protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides []. It is probable that CSA mediates some of its effects via an forming a tight complex with cyclophilin that inhibits the phosphatase activity of calcineurin [], []. Cyclophilin A is a cytosolic and highly abundant protein. The protein belongs to a family of isozymes, including cyclophilins B and C, and natural killer cell cyclophilin-related protein [, , ]. Major isoforms have been found throughout the cell, including the ER, and some are even secreted. The sequences of the different forms of cyclophilin-type PPIases are well conserved. Note: FKBP's, a family of proteins that bind the immunosuppressive drug FK506, are also PPIases, but their sequence is not at all related to that of cyclophilin (see IPR001179 from INTERPRO).; GO: 0003755 peptidyl-prolyl cis-trans isomerase activity, 0006457 protein folding; PDB: 1Z81_A 1IHG_A 1IIP_A 3PMP_B 3O7T_A 2B71_A 1QNG_A 1QNH_A 2HQJ_A 2RMC_G ....

>KOG0415|consensus

Probab=100.00  E-value=1.8e-33  Score=251.91  Aligned_cols=162  Identities=38%  Similarity=0.551  Sum_probs=138.7

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|++|+|||+||.+.+|.+|.|||+||+-.          ||+++.||.|..+|.+|.|||++ .|.||.++|+.-+   
T Consensus         6 eTtlGDlvIDLf~~erP~~clNFLKLCk~K----------YYN~clfh~vq~~f~aQTGDPtG-tG~GG~si~~~ly---   71 (479)
T KOG0415|consen    6 ETTLGDLVIDLFVKERPRTCLNFLKLCKIK----------YYNFCLFHTVQRDFTAQTGDPTG-TGDGGESIYGVLY---   71 (479)
T ss_pred             EeecccEEeeeecccCcHHHHHHHHHHhHh----------hcccceeeeccccceeecCCCCC-CCCCcceeeeecc---
Confidence            677799999999999999999999999555          49999999999999999999974 7777776654311   


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCC-C
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAP-C  178 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~-~  178 (414)
                                                      |.  .+..|++|. +.++|...|+|+|++.| .+.+||||||||+. .
T Consensus        72 --------------------------------G~--q~rffeaE~~p~l~Hsk~G~vsmvs~g-~n~~gSQF~iTlgenL  116 (479)
T KOG0415|consen   72 --------------------------------GE--QARFFEAEFLPKLKHSKMGTVSMVSAG-ENLNGSQFFITLGENL  116 (479)
T ss_pred             --------------------------------cc--cchhhhhhhcccccccccceEEeecCC-cccccceEEEEccccc
Confidence                                            00  023466664 57899999999999999 89999999999996 5


Q ss_pred             CCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcCc
Q psy793          179 PHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGV  231 (414)
Q Consensus       179 p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~i  231 (414)
                      .+|||+|||||+|++|++++.+|+..-+ .+++|..+|+|.++-+|.++++.+.
T Consensus       117 dyLDg~htvfGqV~EG~dtl~kiNea~vD~~~rPykdIRI~HTiiLdDPFddpp  170 (479)
T KOG0415|consen  117 DYLDGKHTVFGQVAEGFDTLTKINEAIVDPKNRPYKDIRIKHTIILDDPFDDPP  170 (479)
T ss_pred             cccccccceeeehhhhHHHHHHHHHHhcCCCCCcccceeeeeeEEecCCCCCch
Confidence            6999999999999999999999988776 6789999999999999998877554

>KOG0885|consensus

Probab=100.00  E-value=5.7e-34  Score=257.17  Aligned_cols=161  Identities=38%  Similarity=0.576  Sum_probs=140.3

Q ss_pred             cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793           11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE   90 (414)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (414)
                      -.|.+.     |+.|+|.|||++..||++|.||++||..+|          |+||.|||++|||.+|||||. ++|    
T Consensus        13 gkvil~-----TT~G~I~iELW~kE~P~acrnFiqKOGegy----------y~nt~fhrlvp~f~~Qggdp~-~~g----   72 (439)
T KOG0885|consen   13 GKVILK-----TTKGDIDIELWAKECPKACRNFIQLCLEGY----------YDNTEFHRLVPGFLVQGGDPT-GTG----   72 (439)
T ss_pred             ceEEEE-----eccCceeeeehhhhhhHHHHHHHHHHHhcc----------ccCceeeeeccchhcccCCCC-CCC----
Confidence            355554     455999999999999999999999996554          999999999999999999996 345    


Q ss_pred             cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccc
Q psy793           91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNS  169 (414)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~s  169 (414)
                                                              +||.||||.+|.+|. ..++++++|+|+||+.+ .+.|||
T Consensus        73 ----------------------------------------tGgesiyg~~fadE~h~Rlrf~rrGlvgmana~-~~~ngs  111 (439)
T KOG0885|consen   73 ----------------------------------------TGGESIYGRPFADEFHPRLRFNRRGLVGMANAG-NDDNGS  111 (439)
T ss_pred             ----------------------------------------CCccccccccchhhcCcceeeeccceeeecccC-CCCCCc
Confidence                                                    677888899998884 67889999999999999 699999


Q ss_pred             hhhhhcCCCCCCCCcceeeEEEEe-chHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcCcc
Q psy793          170 QFFITLAPCPHLDGKNVVFGCVRQ-GFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGVA  232 (414)
Q Consensus       170 qf~it~~~~p~ld~~~~vfG~V~~-G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~i~  232 (414)
                      ||||||+++|+|++++|+||+|+. -+-.+.+|..+.+ .+.+|..+-.|.++.++..++++..+
T Consensus       112 qFfftl~~~~el~nk~tiFGKVtGdtIYn~lri~e~eida~~Rp~~p~kI~s~EV~~npFdDI~p  176 (439)
T KOG0885|consen  112 QFFFTLGDTPELNNKHTIFGKVTGDTIYNMLRISEVEIDADDRPVDPPKIKSVEVLINPFDDIKP  176 (439)
T ss_pred             eEEEEecCChHhcccCceeeeecchhhhhhhhhcccccccccCCCCccceeeeEeecCchhhcch
Confidence            999999999999999999999984 5567778888887 47899999999999999888776554

>KOG0543|consensus

Probab=99.94  E-value=3.2e-25  Score=206.15  Aligned_cols=157  Identities=31%  Similarity=0.535  Sum_probs=146.4

Q ss_pred             CHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH
Q psy793          256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN  335 (414)
Q Consensus       256 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~  335 (414)
                      ..++..+.|...++.||.+|+.|+|..|+..|.+|+..++..... +.++..........+++|+|.||+|+++|.+|+.
T Consensus       200 ~~~e~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~-~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~  278 (397)
T KOG0543|consen  200 FAEERLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSF-DEEEQKKAEALKLACHLNLAACYLKLKEYKEAIE  278 (397)
T ss_pred             chHHHHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccC-CHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHH
Confidence            355788999999999999999999999999999999999876643 4456666667888999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy793          336 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG  413 (414)
Q Consensus       336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~  413 (414)
                      .|+++|.++|+|+||+||+|.|+..+++|+.|+.+|+++++++|+|.++...|..|..+++++++++|++|++||++.
T Consensus       279 ~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~  356 (397)
T KOG0543|consen  279 SCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKL  356 (397)
T ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999864

>KOG0553|consensus

Probab=99.86  E-value=2.4e-21  Score=173.61  Aligned_cols=125  Identities=23%  Similarity=0.421  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      +....|+.++.+||.+++.++|.+|+..|.+||.+                +|.++..|.|+|.+|.++|+|+.|+++|+
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l----------------~P~nAVyycNRAAAy~~Lg~~~~AVkDce  139 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL----------------DPTNAVYYCNRAAAYSKLGEYEDAVKDCE  139 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc----------------CCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence            56678999999999999999999999999999999                89999999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      .||.+||++.++|.|+|.+|+.+|++++|+..|++||+++|+|+..+..|..+...+.+..
T Consensus       140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999999999999999999988877655

>KOG0545|consensus

Probab=99.84  E-value=1.4e-19  Score=156.77  Aligned_cols=169  Identities=23%  Similarity=0.419  Sum_probs=154.3

Q ss_pred             CCCCCCCCCccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC--CcHHHHHhhHHHHHHHHHHHH
Q psy793          244 FPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--QSKTQQKHFRSYYTAALLNMA  321 (414)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~--~~~~~~~~~~~~~~~~~~nla  321 (414)
                      .|..+..+++.++-+++.+....+...||.+|+.|+|.+|..+|..||.++.....-  ....++.+++....+++.|.|
T Consensus       158 ~P~qYq~e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~  237 (329)
T KOG0545|consen  158 APSQYQRETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYC  237 (329)
T ss_pred             CchhhccccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHH
Confidence            455667777788888899999999999999999999999999999999998765522  347799999999999999999


Q ss_pred             HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHH
Q psy793          322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~  400 (414)
                      +|++..++|-++++.|..+|..+|.|.||||++|.++...-+.++|.++|.++|+++|.-. .+.+.|..+..++.+..+
T Consensus       238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~  317 (329)
T KOG0545|consen  238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQE  317 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999999999999875 456889999999999999


Q ss_pred             HHHHHHHhhhcC
Q psy793          401 LEKMTYARMFQN  412 (414)
Q Consensus       401 ~~k~~~~~~f~~  412 (414)
                      .+|-.|.+||++
T Consensus       318 edr~~~~kmfs~  329 (329)
T KOG0545|consen  318 EDRLRCRKMFSQ  329 (329)
T ss_pred             HHHHHHHHhcCC
Confidence            999999999984

>KOG4234|consensus

Probab=99.83  E-value=2e-19  Score=151.51  Aligned_cols=138  Identities=25%  Similarity=0.357  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      .++....+..++..||.+|+.|+|.+|...|..||.+.++..           ......+|.|+|.|++|++.|+.|+.+
T Consensus        88 k~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~-----------~e~rsIly~Nraaa~iKl~k~e~aI~d  156 (271)
T KOG4234|consen   88 KDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS-----------TEERSILYSNRAAALIKLRKWESAIED  156 (271)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc-----------HHHHHHHHhhhHHHHHHhhhHHHHHHH
Confidence            445567889999999999999999999999999999987766           677889999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT  405 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  405 (414)
                      |.+||+++|.+.+|+.|+|.+|..+..|++|+.+|++.++++|....++..+.++-..+.++.++.|.-
T Consensus       157 csKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKee  225 (271)
T KOG4234|consen  157 CSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKEE  225 (271)
T ss_pred             HHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999888876643

>KOG0548|consensus

Probab=99.69  E-value=1.7e-16  Score=152.00  Aligned_cols=117  Identities=25%  Similarity=0.403  Sum_probs=112.8

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+...+..||.+|+.|+|..|+.+|++||..                +|.+..+|.|+|.||.+++.+..|+.+|+++++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr----------------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ie  420 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKR----------------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIE  420 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----------------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3667888999999999999999999999999                899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      ++|++.++|+|.|.|+..+.+|++|++.|+++++++|++.++...+.+|...+
T Consensus       421 L~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  421 LDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998865

>KOG0547|consensus

Probab=99.67  E-value=7.4e-16  Score=145.68  Aligned_cols=135  Identities=22%  Similarity=0.282  Sum_probs=115.8

Q ss_pred             ccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793          253 ETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR  332 (414)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  332 (414)
                      ..+..++..+.|..++++||.+|+.|+|++||++|++||++                .|..+..|.|++.||..+|+|++
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l----------------~p~epiFYsNraAcY~~lgd~~~  167 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIEL----------------CPDEPIFYSNRAACYESLGDWEK  167 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhc----------------CCCCchhhhhHHHHHHHHhhHHH
Confidence            34457788999999999999999999999999999999999                66668899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .+++|++||+++|+.+||++||+.++..+|++.+|+.+..-..-+. =+|..+.-.+.+++...+....+++
T Consensus       168 Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~  239 (606)
T KOG0547|consen  168 VIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEK  239 (606)
T ss_pred             HHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987654443 2456666666666666665555544

>KOG4648|consensus

Probab=99.65  E-value=3.8e-16  Score=141.72  Aligned_cols=121  Identities=27%  Similarity=0.349  Sum_probs=114.1

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      .++.+..+..++++||.||++|.|++||.||.+++.+                .|.....+.|+|.+|++++.|..|..+
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~----------------~P~NpV~~~NRA~AYlk~K~FA~AE~D  153 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV----------------YPHNPVYHINRALAYLKQKSFAQAEED  153 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc----------------CCCCccchhhHHHHHHHHHHHHHHHHh
Confidence            6677888889999999999999999999999999999                788889999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      |+.|+.++..+.+||-|++.+...+|...+|.++++.+|+|.|++.+....++.+..
T Consensus       154 C~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~S  210 (536)
T KOG4648|consen  154 CEAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINS  210 (536)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999998888877777654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.62  E-value=1.1e-14  Score=122.23  Aligned_cols=116  Identities=15%  Similarity=0.192  Sum_probs=109.8

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..++..|+|++|+..|.+++.+                +|....+|.++|.++.++|++++|+..|+++++++|
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p   89 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMA----------------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDA   89 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3567899999999999999999999999                899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +++.+++++|.|+..+|++++|+..|++++++.|++...+..++.++..+..
T Consensus        90 ~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~  141 (144)
T PRK15359         90 SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDT  141 (144)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888776553

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.62  E-value=6.1e-15  Score=142.39  Aligned_cols=118  Identities=17%  Similarity=0.313  Sum_probs=112.7

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..++..|+.+|..++|.+|+.+|.+||++                .|....+|+++|.||++++++++|+.++++|+.++
T Consensus         3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~----------------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL----------------DPNNAELYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45788999999999999999999999999                78888999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      |+++.+|+++|.+++.+|+|++|+..|+++++++|++..+...+..|...+...
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998888654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.55  E-value=1.7e-13  Score=113.55  Aligned_cols=111  Identities=9%  Similarity=0.141  Sum_probs=101.6

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +..+.++..|..++..|++++|...|+-+..+                +|.....|+|||.|+..+|+|.+|+..|.+|+
T Consensus        33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~----------------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~   96 (157)
T PRK15363         33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY----------------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAA   96 (157)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            44677899999999999999999999999999                99999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCCHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL---PNDQQILKEI  388 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~---P~~~~~~~~l  388 (414)
                      .++|+++.++++.|.|++.+|+.+.|.+.|+.|+...   |.+..++...
T Consensus        97 ~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A  146 (157)
T PRK15363         97 QIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRA  146 (157)
T ss_pred             hcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccChhHHHHHHHH
Confidence            9999999999999999999999999999999999987   4444444333

>KOG0550|consensus

Probab=99.55  E-value=2.4e-14  Score=133.11  Aligned_cols=130  Identities=22%  Similarity=0.368  Sum_probs=113.2

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      .-...+.....++.||.+|+.|.|..|.++|+.||.+-+.+            ....+.+|.|+|.++.++|+.++|+.+
T Consensus       242 ~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n------------~~~naklY~nra~v~~rLgrl~eaisd  309 (486)
T KOG0550|consen  242 ASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN------------KKTNAKLYGNRALVNIRLGRLREAISD  309 (486)
T ss_pred             HhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc------------cchhHHHHHHhHhhhcccCCchhhhhh
Confidence            33445667888999999999999999999999999983332            245678999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      |+.|+.++|...++|.++|.|+..+++|++|.++|++|+++.-+ ..++..+.++...+++.+
T Consensus       310 c~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSk  371 (486)
T KOG0550|consen  310 CNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSK  371 (486)
T ss_pred             hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999876 777777777766665443

>KOG0548|consensus

Probab=99.53  E-value=3.5e-14  Score=136.26  Aligned_cols=113  Identities=19%  Similarity=0.326  Sum_probs=109.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..++.+||.+|..|+|+.|+.+|..||.+                +|....+|.|+..||.++++|.+|+++..+.+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l----------------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l   65 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIML----------------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL   65 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHcc----------------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456889999999999999999999999999                7888899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      +|+++++|.|+|.++..+|+|++|+..|.+.|+.+|+|+.+...|..+.
T Consensus        66 ~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   66 NPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999999999999999999998887

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.48  E-value=1.2e-12  Score=108.63  Aligned_cols=116  Identities=15%  Similarity=0.279  Sum_probs=107.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.+++++|+..|++++..                .|....++.++|.++.+++++++|+..+++++.+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY----------------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            456889999999999999999999999998                7788899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +|++...++.+|.++..+|++++|+..|+++++++|++.........+...+
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988777766665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.46  E-value=2.7e-12  Score=133.58  Aligned_cols=113  Identities=18%  Similarity=0.259  Sum_probs=103.0

Q ss_pred             ccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793          253 ETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR  332 (414)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  332 (414)
                      ..++.++....+..+++.|+.+|+.|+|++|+..|++||.+                .|. ...|.|+|.||+++++|++
T Consensus       116 ~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~----------------~p~-~~~~~n~a~~~~~l~~~~~  178 (615)
T TIGR00990       116 ANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIEC----------------KPD-PVYYSNRAACHNALGDWEK  178 (615)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCc-hHHHHHHHHHHHHhCCHHH
Confidence            44557777888999999999999999999999999999998                443 4679999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      |+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|.+++.+++.+.
T Consensus       179 Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       179 VVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            99999999999999999999999999999999999999999888876543

>KOG0551|consensus

Probab=99.46  E-value=5.8e-13  Score=120.89  Aligned_cols=107  Identities=26%  Similarity=0.418  Sum_probs=94.6

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.|..+++.||.||+.++|..|+.+|+++|.---            ......+.+|.|+|+|.+.+|+|+.|+.+|.+|+
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc------------~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al  146 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKC------------ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAAL  146 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcC------------CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3799999999999999999999999999997511            1135678899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  380 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  380 (414)
                      .++|.+.||++|-|.|++.+..+.+|..+++..++++-+
T Consensus       147 ~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  147 KLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             hcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            999999999999999999999988888888777765533

>KOG4626|consensus

Probab=99.46  E-value=1.8e-13  Score=132.97  Aligned_cols=123  Identities=20%  Similarity=0.223  Sum_probs=81.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +.++.+.||+|-..+.|+.|+.+|.+|+.+                .|+...++-|+|.+|..+|..+-||..|++||++
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l----------------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~  315 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNL----------------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL  315 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhc----------------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence            567899999999999999999999999988                5555555555555555555555555555555555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|+.+.||.++|.++..+|+..+|..+|.+||.+.|+.+.+..+|+.++.+.+.-++..
T Consensus       316 ~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~  374 (966)
T KOG4626|consen  316 QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEAT  374 (966)
T ss_pred             CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHH
Confidence            55555555555555555555555555555555555555555555555555555544443

>KOG4626|consensus

Probab=99.45  E-value=5.2e-13  Score=129.77  Aligned_cols=122  Identities=19%  Similarity=0.222  Sum_probs=95.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +....+.|..|-++|++++|+.+|++||++                +|....+|.|+|..|-.+|+.+.|++++++||.+
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI----------------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~  451 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRI----------------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI  451 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhc----------------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence            344455566666666666666666666666                7888888888888888888888888888888888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +|..+.|+-++|.+|...|+..+|+..|+.||++.|+.+++.-++..+.+-+-+....
T Consensus       452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~  509 (966)
T KOG4626|consen  452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDY  509 (966)
T ss_pred             CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccch
Confidence            8888888888888888888888888888888888888888888888887766555443

>KOG4642|consensus

Probab=99.39  E-value=1e-12  Score=114.12  Aligned_cols=115  Identities=23%  Similarity=0.353  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+++.||.+|..+.|..|+.+|.+||.+                .|..+..|.|+|.||+++++|+.+..+|.+|+
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~----------------nP~~~~Y~tnralchlk~~~~~~v~~dcrral   71 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI----------------NPTVASYYTNRALCHLKLKHWEPVEEDCRRAL   71 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhc----------------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH
Confidence            45778999999999999999999999999999                88999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PNDQQILKEIAFVR  392 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~~~~~~~~l~~~~  392 (414)
                      +++|+.++++|.+|.+.+....|++|+..+++|+.+.     |.-..+...|..++
T Consensus        72 ql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   72 QLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             hcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999997764     22345666665554

>KOG0376|consensus

Probab=99.39  E-value=3.5e-13  Score=128.49  Aligned_cols=120  Identities=26%  Similarity=0.364  Sum_probs=115.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..++++++.+|+.+.|+.|+..|.+||++                +|+.+..+.|+|.++++.++|..|+.++.+|+++
T Consensus         4 a~e~k~ean~~l~~~~fd~avdlysKaI~l----------------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    4 AEELKNEANEALKDKVFDVAVDLYSKAIEL----------------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhHHhhhcccchHHHHHHHHHHHHhc----------------CCcceeeechhhhhheeechhhhHHHHHHhhhhc
Confidence            667899999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      +|...++|+|+|.+++.++.+.+|+.+|++...+.|+++.+.+.+..|...+.+++
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988776643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.36  E-value=1e-11  Score=117.30  Aligned_cols=105  Identities=19%  Similarity=0.164  Sum_probs=100.8

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+..+|..+...|++.+|+..|++|+++                .|....+|.++|.++..+|++++|+..++++++
T Consensus        63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         63 RAQLHYERGVLYDSLGLRALARNDFSQALAL----------------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3667899999999999999999999999999                888899999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      ++|++..+++++|.+++..|++++|+.+|+++++++|+++.
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~  167 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY  167 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            99999999999999999999999999999999999999974

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.32  E-value=2.2e-11  Score=126.85  Aligned_cols=138  Identities=9%  Similarity=0.056  Sum_probs=81.9

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQ  324 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~  324 (414)
                      .+..+...|..++..|++++|+..|++++.+.+.....           ..       ..+.....|....+|+++|.++
T Consensus       330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~  409 (615)
T TIGR00990       330 EAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLH  409 (615)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567788999999999999999999999872211100           00       1112222344455555555555


Q ss_pred             HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      +.+|++++|+.+++++++++|++..+++.+|.++..+|++++|+..|+++++..|+++.++..++.++...++..+
T Consensus       410 ~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~  485 (615)
T TIGR00990       410 FIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDE  485 (615)
T ss_pred             HHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555554433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.31  E-value=4.2e-11  Score=105.95  Aligned_cols=107  Identities=18%  Similarity=0.228  Sum_probs=98.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHH-HHhhC--HHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ-LKFKA--YKRAINLCDDI  340 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~~l~~--~~~A~~~~~~a  340 (414)
                      +..+...|..+...|++++|+..|.+|+++                .|....++.++|.++ ...|+  +++|...++++
T Consensus        73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l----------------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~a  136 (198)
T PRK10370         73 SEQWALLGEYYLWRNDYDNALLAYRQALQL----------------RGENAELYAALATVLYYQAGQHMTPQTREMIDKA  136 (198)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            566888999999999999999999999999                888999999999985 77787  59999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      ++++|++..+++.+|.+++.+|+|++|+..|+++++++|.+..-..
T Consensus       137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~  182 (198)
T PRK10370        137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ  182 (198)
T ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence            9999999999999999999999999999999999999987654433

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.29  E-value=1.2e-11  Score=89.90  Aligned_cols=66  Identities=27%  Similarity=0.571  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCC
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLP  379 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P  379 (414)
                      +.+|.++|.+++.+++|++|+.+|+++++++|+++.+|+++|.|+..+| ++++|+++|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4678999999999999999999999999999999999999999999999 79999999999999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.26  E-value=8.7e-11  Score=94.72  Aligned_cols=112  Identities=13%  Similarity=0.117  Sum_probs=97.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ++.+...|..+++.|+|++|+..|.+++...+.             .+....+++.+|.++++.+++++|+..+++++..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~   68 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPK-------------STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKK   68 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            356889999999999999999999999987211             1233578899999999999999999999999999


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793          344 EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  388 (414)
Q Consensus       344 ~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  388 (414)
                      +|++   +.+++.+|.++..++++++|+..|+++++..|++..+....
T Consensus        69 ~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~  116 (119)
T TIGR02795        69 YPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQ  116 (119)
T ss_pred             CCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHH
Confidence            8875   67899999999999999999999999999999998766543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.24  E-value=1e-10  Score=98.15  Aligned_cols=101  Identities=12%  Similarity=0.090  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC
Q psy793          284 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN  363 (414)
Q Consensus       284 ~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~  363 (414)
                      ...|++|+++                +|..   +.++|.++..+|++++|+..|++++.++|.+..+|+.+|.++..+|+
T Consensus        13 ~~~~~~al~~----------------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~   73 (144)
T PRK15359         13 EDILKQLLSV----------------DPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKE   73 (144)
T ss_pred             HHHHHHHHHc----------------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence            3568888887                5654   66899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       364 ~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +++|+..|+++++++|++..++..++.++..+++..+...
T Consensus        74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~  113 (144)
T PRK15359         74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE  113 (144)
T ss_pred             HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999999999999888877543

>KOG1155|consensus

Probab=99.24  E-value=2.3e-10  Score=108.29  Aligned_cols=123  Identities=18%  Similarity=0.254  Sum_probs=105.0

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+-..|..|...++...|+..|++|+++                .|.+-.+|+.+|++|--|+..-=|+-++++|+++.
T Consensus       365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi----------------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k  428 (559)
T KOG1155|consen  365 SAWTLMGHEYVEMKNTHAAIESYRRAVDI----------------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK  428 (559)
T ss_pred             HHHHHhhHHHHHhcccHHHHHHHHHHHhc----------------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC
Confidence            34555778888888888888888888887                88888899999999999999888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      |++...|-.+|.||..+++.++|+++|++|+.....+..+...|++++.++++.++...
T Consensus       429 PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  429 PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999999999999888888888899999888888877654

>KOG1155|consensus

Probab=99.22  E-value=1e-10  Score=110.75  Aligned_cols=118  Identities=20%  Similarity=0.242  Sum_probs=114.1

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  349 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~  349 (414)
                      .||-|.-+++.++|+.+|++||++                +|....+|.-+|-=|+.|++-..|++.|++|++++|.+.+
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkL----------------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR  399 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKL----------------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR  399 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhc----------------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH
Confidence            799999999999999999999999                8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      |||.+|++|..++-..=|+-+|++|+++.|+|+..+..|+.|+.++.+..+..|
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK  453 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK  453 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999999999999999999999999999999999988877765

>KOG1126|consensus

Probab=99.22  E-value=1.7e-11  Score=120.71  Aligned_cols=139  Identities=18%  Similarity=0.147  Sum_probs=99.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------C-------cHHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------Q-------SKTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~-------~~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      .+.+...||.|.-+++++.|+++|++|+.+-+...=+           +       ..-.+...+|..-.+|+.+|.+|+
T Consensus       421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~  500 (638)
T KOG1126|consen  421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL  500 (638)
T ss_pred             cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence            4568889999999999999999999999873211000           0       011222234566677777777777


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      |+++++.|.-.+++|++++|.+.......|..+.++|+.++|+..|++|+.++|.|+-.+...+.++..+.++.+.-
T Consensus       501 Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal  577 (638)
T KOG1126|consen  501 KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEAL  577 (638)
T ss_pred             ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777666653

>PRK15331 chaperone protein SicA; Provisional

Probab=99.22  E-value=1.9e-10  Score=95.88  Aligned_cols=120  Identities=16%  Similarity=0.260  Sum_probs=106.7

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      ..+.+...|..+|..|+|++|...|+-...+                ++.....++.||.|+..+++|++|+..|..|..
T Consensus        36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~----------------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~   99 (165)
T PRK15331         36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY----------------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT   99 (165)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999988887                777788899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      ++++++...|+.|.|++.+|+.+.|+.+|+.+++ .|.+..+...-...+..+.+..
T Consensus       100 l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~~~  155 (165)
T PRK15331        100 LLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKTAE  155 (165)
T ss_pred             cccCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999999999999999 6887777766666655555443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.21  E-value=2.6e-10  Score=99.19  Aligned_cols=101  Identities=21%  Similarity=0.204  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ..+.+.+...+|..|+..|++..|....++||++                +|....+|.-+|..|.++|+.+.|-+.|++
T Consensus        31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~----------------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~Yrk   94 (250)
T COG3063          31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH----------------DPSYYLAHLVRAHYYQKLGENDLADESYRK   94 (250)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence            3456788899999999999999999999999999                777888888888888888888888888888


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      |+.++|++...+.+.|.-+..+|++++|...|++|+.
T Consensus        95 Alsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~  131 (250)
T COG3063          95 ALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALA  131 (250)
T ss_pred             HHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHh
Confidence            8888777644444444444444444444444444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.19  E-value=5.6e-10  Score=96.76  Aligned_cols=110  Identities=16%  Similarity=0.167  Sum_probs=96.2

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ....+..+...|..+...|++++|+.+|++|+.+.+.             .+....++.++|.++.++|+|++|+..+++
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED-------------PNDRSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc-------------cchHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455778999999999999999999999999987221             112356899999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCH
Q psy793          340 ILLMEPNNVKALFRRGRAQVSMNN--------------FEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~lg~--------------~~~A~~~~~~al~l~P~~~  382 (414)
                      ++.+.|.+..++..+|.++..+++              +++|+..+++++.++|++.
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            999999999999999999999988              6888999999999999873

>KOG0624|consensus

Probab=99.17  E-value=3.7e-10  Score=103.26  Aligned_cols=113  Identities=22%  Similarity=0.332  Sum_probs=104.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +....+.|+.++.++++..|+.+|..|++.                +|.+-.+++.+|.+|+.+|+-..|+.+++++|++
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~----------------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel  101 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEG----------------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL  101 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC----------------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence            566889999999999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVR  392 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~  392 (414)
                      .|+..-|...+|.+++.+|+++.|..+|+++|+-+|++.   +++..+..+.
T Consensus       102 KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~  153 (504)
T KOG0624|consen  102 KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQ  153 (504)
T ss_pred             CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHH
Confidence            999999999999999999999999999999999999764   4555554443

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.17  E-value=3.8e-10  Score=99.83  Aligned_cols=116  Identities=11%  Similarity=0.033  Sum_probs=102.6

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  356 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~  356 (414)
                      .++.++++..++++++.                +|.+...|.++|.+|..++++++|+..++++++++|+++.+++.+|.
T Consensus        52 ~~~~~~~i~~l~~~L~~----------------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~  115 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA----------------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALAT  115 (198)
T ss_pred             chhHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            45667777777777777                88999999999999999999999999999999999999999999999


Q ss_pred             HH-HHcCC--HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          357 AQ-VSMNN--FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       357 ~~-~~lg~--~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      ++ ...|+  +++|...++++++++|++..++..++.+....++..+..+ .+.++
T Consensus       116 aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~a  170 (198)
T PRK10370        116 VLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKV  170 (198)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            85 67787  5999999999999999999999999999998888877654 44443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.15  E-value=5.7e-10  Score=119.94  Aligned_cols=113  Identities=7%  Similarity=0.001  Sum_probs=60.5

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      ...|..+.+.|++++|+..|.+|+.+                .|....++.++|.++..+|++++|+..++++++++|++
T Consensus       613 ~~LA~~l~~lG~~deA~~~l~~AL~l----------------~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~  676 (987)
T PRK09782        613 VARATIYRQRHNVPAAVSDLRAALEL----------------EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDD  676 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            34444444444444444444444444                45555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +.+++++|.++..+|++++|+..|+++++++|++..+....+.+..+..
T Consensus       677 ~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~  725 (987)
T PRK09782        677 PALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF  725 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence            5555555555555555555555555555555555555554444444333

>KOG0547|consensus

Probab=99.15  E-value=3.6e-10  Score=107.68  Aligned_cols=124  Identities=14%  Similarity=0.246  Sum_probs=92.7

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..+...|..+|-.|++..|...++++|.+                ++....+|..+|..|....+-.+-..++++|
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l----------------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A  386 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL----------------DPAFNSLYIKRAAAYADENQSEKMWKDFNKA  386 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc----------------CcccchHHHHHHHHHhhhhccHHHHHHHHHH
Confidence            456888999999999999999999999999998                5555666777777777777777777777777


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      ..+||.|+..||.||+.++-+++|++|+++|++|+.++|++.-+.-.+.-++.+..+..+
T Consensus       387 ~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~  446 (606)
T KOG0547|consen  387 EDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAE  446 (606)
T ss_pred             HhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777776665555555555444333

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.15  E-value=4.8e-10  Score=116.14  Aligned_cols=124  Identities=6%  Similarity=-0.076  Sum_probs=119.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ++.++..|......|.+++|...+..++++                .|....++.+++.++.+++++++|+..++++|..
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~----------------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR----------------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh----------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            677899999999999999999999999999                8999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +|+++.+++.+|.++.++|++++|+..|++++..+|+++.++..++.++..+++.++...
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~  209 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD  209 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999988887653

>PRK12370 invasion protein regulator; Provisional

Probab=99.15  E-value=5.6e-10  Score=114.56  Aligned_cols=75  Identities=17%  Similarity=0.181  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                      +|....++..+|.++..++++++|+..+++|++++|+++.+|+.+|.++..+|++++|+..|+++++++|.+..+
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~  408 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAA  408 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhh
Confidence            444444555555555555555555555555555555555555555555555555555555555555555554433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.14  E-value=5e-10  Score=84.99  Aligned_cols=99  Identities=33%  Similarity=0.546  Sum_probs=90.2

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..++..|++++|+..+.++++.                .+....++.++|.++...+++++|+..+++++.+.|
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   65 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALEL----------------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP   65 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            3677899999999999999999999987                455557889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  380 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  380 (414)
                      .+..+++.+|.++..+|++++|...++++++.+|.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            99999999999999999999999999999998874

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.14  E-value=2.4e-10  Score=81.90  Aligned_cols=65  Identities=26%  Similarity=0.449  Sum_probs=60.9

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      +.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999985

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.13  E-value=2.2e-10  Score=86.78  Aligned_cols=81  Identities=22%  Similarity=0.389  Sum_probs=72.2

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH--HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR  354 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~  354 (414)
                      +++|+.|+..|+++++.                .|.  ....++++|.||+++++|++|+..+++ ++.++.+...++.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~----------------~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~   64 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLEL----------------DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLL   64 (84)
T ss_dssp             TT-HHHHHHHHHHHHHH----------------HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHH----------------CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHH
Confidence            58999999999999998                331  566788899999999999999999999 99999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q psy793          355 GRAQVSMNNFEQGLQDYEQA  374 (414)
Q Consensus       355 g~~~~~lg~~~~A~~~~~~a  374 (414)
                      |.|+..+|+|++|+..|+++
T Consensus        65 a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   65 ARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHhcC
Confidence            99999999999999999875

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.12  E-value=1.5e-10  Score=84.13  Aligned_cols=66  Identities=23%  Similarity=0.380  Sum_probs=63.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHh
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILL  342 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~  342 (414)
                      +..+...|..++..++|++|+.+|++|+++                +|....+|+++|.||.+++ ++.+|+.+++++|+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~----------------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL----------------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH----------------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            678999999999999999999999999999                8999999999999999999 79999999999999


Q ss_pred             cCC
Q psy793          343 MEP  345 (414)
Q Consensus       343 ~~p  345 (414)
                      ++|
T Consensus        67 l~P   69 (69)
T PF13414_consen   67 LDP   69 (69)
T ss_dssp             HST
T ss_pred             cCc
Confidence            998

...

>KOG1126|consensus

Probab=99.11  E-value=5.6e-10  Score=110.15  Aligned_cols=124  Identities=18%  Similarity=0.319  Sum_probs=116.9

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ++++-.|.+|+|+++++.|..+|++|+.+                .|....+..-++..+.++|+.++|+..+++|+.++
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~I----------------NP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld  553 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEI----------------NPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD  553 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcC----------------CccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC
Confidence            45666899999999999999999999999                89999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  404 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  404 (414)
                      |.++-..|.+|.+++.+++|++|+..+++..++-|++..+...+++++.+++.....-++
T Consensus       554 ~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~  613 (638)
T KOG1126|consen  554 PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLH  613 (638)
T ss_pred             CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHh
Confidence            999999999999999999999999999999999999999999999999999887765543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.11  E-value=1.8e-09  Score=96.93  Aligned_cols=138  Identities=13%  Similarity=0.114  Sum_probs=80.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      +..+...|..++..|++++|+..+++++...+.....           ..       ..+.....|....++.+++.++.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            5566777778888888888888887777652111000           00       00111112333445566666666


Q ss_pred             HhhCHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLME--PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~--p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .+|++++|+..+.+++...  +.....++.+|.++..+|++++|...|+++++.+|++..++..++.++...++..+.
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            6666666666666666542  334455666666666666666666666666666666666666666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.11  E-value=1.1e-09  Score=117.80  Aligned_cols=110  Identities=17%  Similarity=0.201  Sum_probs=99.0

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  356 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~  356 (414)
                      .|++++|+..|.+|+++                .|. ..++.++|.++.++|++++|+..+++++.++|+++.+++++|.
T Consensus       589 ~Gr~~eAl~~~~~AL~l----------------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~  651 (987)
T PRK09782        589 PGQPELALNDLTRSLNI----------------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGY  651 (987)
T ss_pred             CCCHHHHHHHHHHHHHh----------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            36666666666666665                665 7899999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          357 AQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       357 ~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++..+|++++|+..|+++++++|++..++..++.++..+++..+..+
T Consensus       652 aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        652 ALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999888877655

>KOG1308|consensus

Probab=99.11  E-value=6.3e-11  Score=108.39  Aligned_cols=107  Identities=23%  Similarity=0.250  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      .++..+++...+-.+..++..|.++.|+.+|..||.+                .|....+|.+++.++++++++..|+.+
T Consensus       107 Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l----------------np~~a~l~~kr~sv~lkl~kp~~airD  170 (377)
T KOG1308|consen  107 TEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIEL----------------NPPLAILYAKRASVFLKLKKPNAAIRD  170 (377)
T ss_pred             hHHHHHHHHHHHHHHHHHhcCcchhhhhccccccccc----------------CCchhhhcccccceeeeccCCchhhhh
Confidence            6678889999999999999999999999999999999                888899999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      |..|+.++|+.++.|-.++.+...+|+|++|..+++.+++++-
T Consensus       171 ~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  171 CDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDY  213 (377)
T ss_pred             hhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999874

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=2.8e-09  Score=97.16  Aligned_cols=113  Identities=16%  Similarity=0.269  Sum_probs=98.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.|+|++|+..|++++...+.             .+....+++.+|.+|.+++++++|+..++++++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-------------~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPF-------------SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            667899999999999999999999999987321             2344568999999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          344 EPNNVK---ALFRRGRAQVSM--------NNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       344 ~p~~~~---a~~~~g~~~~~l--------g~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .|+++.   +++.+|.++..+        +++++|+..|+++++.+|++..+...+.
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~  156 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK  156 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence            998876   799999999987        8899999999999999999976654443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK12370 invasion protein regulator; Provisional

Probab=99.10  E-value=8.8e-10  Score=113.12  Aligned_cols=132  Identities=11%  Similarity=0.027  Sum_probs=108.0

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccC-----------C-------cHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQS-----------Q-------SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~-----------~-------~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      .+++.+|+..+++|+++-+.....           .       ..++...+.|....+++++|.++..+|++++|+..++
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~  396 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTIN  396 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            355899999999999874322111           0       1234556678888999999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-PNDQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      ++++++|.++.+++.++.+++.+|++++|+..++++++.+ |+++.++..++.++...++..+.... +.++
T Consensus       397 ~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~-~~~~  467 (553)
T PRK12370        397 ECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKL-TKEI  467 (553)
T ss_pred             HHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHH-HHHh
Confidence            9999999999888888888888999999999999999885 78899999999999888887776553 3443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.09  E-value=3.1e-09  Score=91.74  Aligned_cols=109  Identities=18%  Similarity=0.103  Sum_probs=92.0

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..+...|..++..++|++|+..|.+|+.+.+.             ......++.|+|.++.+++++++|+.+++++
T Consensus        32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~-------------~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID-------------PYDRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc-------------chhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            346888999999999999999999999999988221             1224568999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHH-------HcCCHH-------HHHHHHHHHHhhCCCCH
Q psy793          341 LLMEPNNVKALFRRGRAQV-------SMNNFE-------QGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~-------~lg~~~-------~A~~~~~~al~l~P~~~  382 (414)
                      +.++|.+..++..+|.++.       .+|+++       +|+..|++++..+|.+.
T Consensus        99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999988       777876       66666667788888654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.09  E-value=2.4e-09  Score=96.15  Aligned_cols=91  Identities=11%  Similarity=0.078  Sum_probs=81.8

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      .....+.++|.++..++++++|+..+++++..+|++..+++.+|.++..+|++++|+..+++++++.|.+...+..+..+
T Consensus       133 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  212 (234)
T TIGR02521       133 QPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI  212 (234)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999988888888888


Q ss_pred             HHHHHHHHHHH
Q psy793          392 RKQMRHHLNLE  402 (414)
Q Consensus       392 ~~~~~~~~~~~  402 (414)
                      ....++..+..
T Consensus       213 ~~~~~~~~~a~  223 (234)
T TIGR02521       213 ARALGDVAAAQ  223 (234)
T ss_pred             HHHHhhHHHHH
Confidence            77766665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.08  E-value=1.3e-09  Score=90.35  Aligned_cols=94  Identities=16%  Similarity=0.155  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .|....+...+|.++++.+++++|+..+++++.++|.+..+++++|.++..+|++++|+..|+++++++|.+...+..++
T Consensus        13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la   92 (135)
T TIGR02552        13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA   92 (135)
T ss_pred             ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            78888899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~~~~~~~~k  403 (414)
                      .++...++..+..+
T Consensus        93 ~~~~~~g~~~~A~~  106 (135)
T TIGR02552        93 ECLLALGEPESALK  106 (135)
T ss_pred             HHHHHcCCHHHHHH
Confidence            99998887666533

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.07  E-value=3.8e-09  Score=87.82  Aligned_cols=94  Identities=14%  Similarity=0.103  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      +......+.+|..+...|++++|...++.+..++|.+...|+++|.|+..+|+|++|+..|.+|+.++|+|+.+..+++.
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~  111 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAE  111 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHH
Confidence            66778888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          391 VRKQMRHHLNLEKM  404 (414)
Q Consensus       391 ~~~~~~~~~~~~k~  404 (414)
                      |+-.+++.....+.
T Consensus       112 c~L~lG~~~~A~~a  125 (157)
T PRK15363        112 CYLACDNVCYAIKA  125 (157)
T ss_pred             HHHHcCCHHHHHHH
Confidence            99998887776543

>KOG1125|consensus

Probab=99.05  E-value=4.2e-10  Score=109.42  Aligned_cols=118  Identities=13%  Similarity=0.184  Sum_probs=106.8

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      ...-+|..|.-.++|+.|+.||+.||..                +|.+..+|..||+.+---.+..+|+..|.+||++.|
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~v----------------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP  495 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQV----------------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQP  495 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHhc----------------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCC
Confidence            3455899999999999999999999999                999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----------CHHHHHHHHHHHHHHHHHH
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----------DQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~----------~~~~~~~l~~~~~~~~~~~  399 (414)
                      ..+.+.|++|.+++.+|.|++|++.|-.||.+.+.          +..++..|..+...+++..
T Consensus       496 ~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  496 GYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             CeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            99999999999999999999999999999999765          2358888887776665554

>KOG4555|consensus

Probab=99.05  E-value=1.2e-08  Score=80.82  Aligned_cols=133  Identities=15%  Similarity=0.095  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      ..++....+-.+|..+...|+.+.|++.|.+||.+                -|....+|.|+|.++.-.++.++|+++++
T Consensus        38 ~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l----------------~P~raSayNNRAQa~RLq~~~e~ALdDLn  101 (175)
T KOG4555|consen   38 QAIKASRELELKAIALAEAGDLDGALELFGQALCL----------------APERASAYNNRAQALRLQGDDEEALDDLN  101 (175)
T ss_pred             HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh----------------cccchHhhccHHHHHHHcCChHHHHHHHH
Confidence            34566777888999999999999999999999999                78888999999999999999999999999


Q ss_pred             HHHhcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy793          339 DILLMEPNNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG  413 (414)
Q Consensus       339 ~al~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~  413 (414)
                      +|+++.-+..    .+|..+|..|..+|+.+.|..+|+.|-++-..  -++..|-.    +.-+...=.++...+|++.
T Consensus       102 ~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~--FAr~QLV~----lNPYAAlCN~MLa~~f~ql  174 (175)
T KOG4555|consen  102 KALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSK--FAREQLVE----LNPYAALCNQMLADAFDQL  174 (175)
T ss_pred             HHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCH--HHHHHHHh----cChHHHHHHHHHHHHHHhc
Confidence            9999975543    47889999999999999999999999998643  33333322    2223333334555555554

>KOG1173|consensus

Probab=99.04  E-value=2.7e-09  Score=103.54  Aligned_cols=121  Identities=18%  Similarity=0.333  Sum_probs=106.4

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+.+.|.++|..+.|.+|+..|++++..++.....         .+.+...+.|+|-++.++++|.+|+.+++++|.+.
T Consensus       415 lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e---------~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  415 LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNE---------KIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhcccc---------ccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            347789999999999999999999999665433311         23467889999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      |.++..|-..|.+|..+|+++.|+..|.++|-++|+|..+...|..+...
T Consensus       486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998888888766554

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.04  E-value=3.5e-09  Score=100.02  Aligned_cols=114  Identities=10%  Similarity=0.007  Sum_probs=99.1

Q ss_pred             cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793          278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  357 (414)
                      ...+.++..+.++|...+- .           .+.....|+++|.+|..+|++++|+.+++++++++|+++.+|+.+|.+
T Consensus        40 ~~~e~~i~~~~~~l~~~~~-~-----------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  107 (296)
T PRK11189         40 LQQEVILARLNQILASRDL-T-----------DEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIY  107 (296)
T ss_pred             hHHHHHHHHHHHHHccccC-C-----------cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4567888888888864211 0           245578899999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          358 QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       358 ~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +..+|++++|+..|+++++++|++..++.+++.++...++..+..+
T Consensus       108 ~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~  153 (296)
T PRK11189        108 LTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQD  153 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999999999999887777666543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=2.7e-09  Score=94.72  Aligned_cols=122  Identities=15%  Similarity=0.103  Sum_probs=114.9

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|...+..|+|..|+..+.+|.++                .|.+..+|+-+|.+|.++|++++|...|.+++++.|
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l----------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~  165 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARL----------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP  165 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhcc----------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc
Confidence            3555999999999999999999999999                899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .++.++-++|..++-.|+++.|.+.+..+....+.|..+..++..+....++..+.++
T Consensus       166 ~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~  223 (257)
T COG5010         166 NEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAED  223 (257)
T ss_pred             CCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHh
Confidence            9999999999999999999999999999999999999999999999888887776654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.03  E-value=1.2e-09  Score=102.44  Aligned_cols=124  Identities=21%  Similarity=0.204  Sum_probs=103.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+.+.|++++|+..|++|+++                .|....+...++.++..+|+++++...+....+.
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~  209 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALEL----------------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKA  209 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            445677899999999999999999999999                8888899999999999999999999999998888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .|.++..+..+|.++..+|++++|+..|+++++.+|+|+.++..++.++...++..+..+
T Consensus       210 ~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~  269 (280)
T PF13429_consen  210 APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR  269 (280)
T ss_dssp             -HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------
T ss_pred             CcCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            899999999999999999999999999999999999999999999999999998877654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.02  E-value=3.7e-09  Score=110.47  Aligned_cols=119  Identities=14%  Similarity=0.135  Sum_probs=81.4

Q ss_pred             HHHhhhHHhhhcCHHH----HHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          267 IKNSGNEYFKLNRMHD----AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~----A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      +...|..++..|++++    |+..|++++++                .|....++.++|.++.++|++++|+..++++++
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l----------------~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~  312 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQF----------------NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA  312 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4445666666666653    56666666665                566667777777777777777777777777777


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      ++|+++.+++.+|.++..+|++++|+..|+++++.+|++..+...++.++...++..+.
T Consensus       313 l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA  371 (656)
T PRK15174        313 THPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEA  371 (656)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHH
Confidence            77777777777777777777777777777777777777766555555555555544443

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.01  E-value=3.6e-09  Score=110.57  Aligned_cols=119  Identities=12%  Similarity=0.050  Sum_probs=108.4

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH----HHHHHHHHHhcC
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR----AINLCDDILLME  344 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~----A~~~~~~al~~~  344 (414)
                      ..|..+++.|++++|+..|.++++.                .|....++.++|.++..+|++++    |+..++++++++
T Consensus       217 ~l~~~l~~~g~~~eA~~~~~~al~~----------------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        217 LAVDTLCAVGKYQEAIQTGESALAR----------------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            3467788889999999999999887                67778899999999999999996    899999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      |+++.++..+|.++..+|++++|+..|+++++++|++..++..++.++...++..+...
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~  339 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASD  339 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999988887766544

>KOG0624|consensus

Probab=98.96  E-value=2.9e-09  Score=97.53  Aligned_cols=127  Identities=13%  Similarity=0.229  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      +.++.+......+......+.|.++++.+++.++.-+..            .+.....+-.++.|+.+-+++.+|+..|.
T Consensus       264 KklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~------------~~ir~~~~r~~c~C~~~d~~~~eAiqqC~  331 (504)
T KOG0624|consen  264 KKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEE------------TMIRYNGFRVLCTCYREDEQFGEAIQQCK  331 (504)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcc------------cceeeeeeheeeecccccCCHHHHHHHHH
Confidence            344555566667777888888888888888888761110            12334556678999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      ++|.++|+++.++.-+|.+|+.-..|+.|+.+|++|.+++++|..++..+.++.+..++
T Consensus       332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkq  390 (504)
T KOG0624|consen  332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQ  390 (504)
T ss_pred             HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988887665443

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=2.4e-08  Score=94.65  Aligned_cols=115  Identities=11%  Similarity=0.063  Sum_probs=94.0

Q ss_pred             HHHHHhhhHHhhhc-CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH--HHHHHHHHHHH
Q psy793          265 RTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY--KRAINLCDDIL  341 (414)
Q Consensus       265 ~~~~~~G~~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~--~~A~~~~~~al  341 (414)
                      ..+..+|..+.+.+ ++++|+..+.+++..                .|....+|.+++.++.++++.  ++++.+++++|
T Consensus        72 taW~~R~~iL~~L~~~l~eeL~~~~~~i~~----------------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal  135 (320)
T PLN02789         72 TVWHFRRLCLEALDADLEEELDFAEDVAED----------------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKIL  135 (320)
T ss_pred             HHHHHHHHHHHHcchhHHHHHHHHHHHHHH----------------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence            34555666666666 467777777777776                777788899999988888874  77888999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +++|.|..+|..++.++..+++|++|++++.++++.+|.|..++.....+...+
T Consensus       136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999998888876554

>KOG0553|consensus

Probab=98.95  E-value=5.4e-09  Score=94.57  Aligned_cols=94  Identities=18%  Similarity=0.309  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      -+-+-|.-+++.++|.+|+..|++||+++|.|+-.|.+||.+|..||.|+.|+++++.|+.++|....++..|+.++..+
T Consensus        83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            34466777889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhh
Q psy793          396 RHHLNLEKMTYARMF  410 (414)
Q Consensus       396 ~~~~~~~k~~~~~~f  410 (414)
                      ++.++.... |+|-+
T Consensus       163 gk~~~A~~a-ykKaL  176 (304)
T KOG0553|consen  163 GKYEEAIEA-YKKAL  176 (304)
T ss_pred             CcHHHHHHH-HHhhh
Confidence            999888776 66543

>PLN02789 farnesyltranstransferase

Probab=98.95  E-value=6.7e-08  Score=91.62  Aligned_cols=120  Identities=11%  Similarity=0.080  Sum_probs=106.8

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      +.+.+.+++|+..+.++|.+                .|....+|..++.++.+++ ++++++..++++++.+|++..+|+
T Consensus        47 l~~~e~serAL~lt~~aI~l----------------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~  110 (320)
T PLN02789         47 YASDERSPRALDLTADVIRL----------------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWH  110 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhH
Confidence            56678999999999999999                8999999999999999998 689999999999999999999999


Q ss_pred             HHHHHHHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy793          353 RRGRAQVSMNNF--EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF  410 (414)
Q Consensus       353 ~~g~~~~~lg~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f  410 (414)
                      .++.++..+++.  ++++..++++++++|.|..++...+.+...++...+ +-..+.+++
T Consensus       111 ~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I  169 (320)
T PLN02789        111 HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLL  169 (320)
T ss_pred             HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHH
Confidence            999999999874  789999999999999999999999999998877554 333444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.94  E-value=1.1e-08  Score=83.66  Aligned_cols=111  Identities=19%  Similarity=0.287  Sum_probs=96.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|...++.|+|.+|++.++......+.             .+....+.+.++.+|++.++|++|+..+++-|++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-------------g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-------------GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            456889999999999999999999888776432             3445578889999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHhhCCCCHHHHHH
Q psy793          344 EPNNV---KALFRRGRAQVSMNN---------------FEQGLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       344 ~p~~~---~a~~~~g~~~~~lg~---------------~~~A~~~~~~al~l~P~~~~~~~~  387 (414)
                      +|.++   .++|.+|.+++.+..               ..+|..+|++.++..|+...+...
T Consensus        77 hP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA  138 (142)
T PF13512_consen   77 HPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADA  138 (142)
T ss_pred             CCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHH
Confidence            99886   589999999999987               899999999999999998766543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.93  E-value=5.5e-09  Score=76.62  Aligned_cols=71  Identities=24%  Similarity=0.490  Sum_probs=66.0

Q ss_pred             HHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          321 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       321 a~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      ...|++.++|++|+.++++++.++|+++.+++.+|.++..+|++++|+.+|+++++..|++..+......+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999999999999999998887766543

>KOG2003|consensus

Probab=98.92  E-value=6.4e-09  Score=98.31  Aligned_cols=127  Identities=22%  Similarity=0.247  Sum_probs=116.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+.++||..|..|++++|.+.|++||.-                +.....+++|++..+.++++.++|++++-+.-.+
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n----------------dasc~ealfniglt~e~~~~ldeald~f~klh~i  553 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNN----------------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI  553 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcC----------------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH
Confidence            455778999999999999999999999988                8889999999999999999999999999999888


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY  406 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~  406 (414)
                      --+++..++.+|.+|..+.+...|++.|-++..+-|+|+.++..|+.++.+-++..+.-.-.|
T Consensus       554 l~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~y  616 (840)
T KOG2003|consen  554 LLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHY  616 (840)
T ss_pred             HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhh
Confidence            788999999999999999999999999999999999999999999999988877766544433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.90  E-value=1.9e-08  Score=107.16  Aligned_cols=115  Identities=15%  Similarity=0.135  Sum_probs=107.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+.+.|++++|+..|++++++                .|....++.+++.++...+++++|+..++++++.
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~  112 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL----------------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG  112 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            445788999999999999999999999999                7878888999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +|+++. ++.+|.++...|++++|+..|+++++++|++..++..++.++...
T Consensus       113 ~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~  163 (765)
T PRK10049        113 APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNN  163 (765)
T ss_pred             CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            999999 999999999999999999999999999999999998888876543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.90  E-value=1.9e-08  Score=108.50  Aligned_cols=126  Identities=18%  Similarity=0.237  Sum_probs=102.0

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..+.+.|++++|+..|++++..                .|....++.+++.++.+.++ .+|+..+++++.+.|
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~----------------~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~  834 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKK----------------APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAP  834 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC
Confidence            3455666777777777777777777766                56677888888888888888 889999999999989


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      +++..+..+|.++..+|++++|+..|+++++++|.++.+...+..++...++..+..+ .+.+|
T Consensus       835 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~  897 (899)
T TIGR02917       835 NIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARK-ELDKL  897 (899)
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            8888888999999999999999999999999999999999999888888877665544 44444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.89  E-value=1.9e-08  Score=111.95  Aligned_cols=121  Identities=21%  Similarity=0.254  Sum_probs=96.9

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      +...|..+++.|++++|+..|++++++                .|....++.++|.++..+|++++|+..|+++++++|+
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~----------------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~  417 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQV----------------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG  417 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            345688889999999999999999998                6667778888888888888888888888888888888


Q ss_pred             CHHHHHHHHH------------------------------------------HHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          347 NVKALFRRGR------------------------------------------AQVSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       347 ~~~a~~~~g~------------------------------------------~~~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                      +..++..++.                                          ++...|++++|+..|+++++++|++..+
T Consensus       418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~  497 (1157)
T PRK11447        418 NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWL  497 (1157)
T ss_pred             CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            8766654443                                          3445688888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy793          385 LKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       385 ~~~l~~~~~~~~~~~~~~k  403 (414)
                      +..++.++...++..+..+
T Consensus       498 ~~~LA~~~~~~G~~~~A~~  516 (1157)
T PRK11447        498 TYRLAQDLRQAGQRSQADA  516 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHH
Confidence            8888888877777665543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.88  E-value=2.4e-08  Score=90.96  Aligned_cols=126  Identities=11%  Similarity=0.114  Sum_probs=106.1

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh--------hCHHHHHHH
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF--------KAYKRAINL  336 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--------~~~~~A~~~  336 (414)
                      ..+...|..+++.+++++|+..|+++++..+.             .+....+++.+|.++.++        +++++|+..
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-------------~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~  137 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN-------------HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEA  137 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-------------CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHH
Confidence            45688899999999999999999999998332             122234788999999887        899999999


Q ss_pred             HHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRKQMR  396 (414)
Q Consensus       337 ~~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~~~~  396 (414)
                      +++++..+|++..++                 +.+|.+|+.+|++++|+..|+++++..|++   ..++..++.++..++
T Consensus       138 ~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg  217 (235)
T TIGR03302       138 FQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG  217 (235)
T ss_pred             HHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence            999999999986442                 467888999999999999999999997765   588999999999988


Q ss_pred             HHHHHHH
Q psy793          397 HHLNLEK  403 (414)
Q Consensus       397 ~~~~~~k  403 (414)
                      +..+..+
T Consensus       218 ~~~~A~~  224 (235)
T TIGR03302       218 LKDLAQD  224 (235)
T ss_pred             CHHHHHH
Confidence            8877654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.88  E-value=6.5e-09  Score=75.07  Aligned_cols=68  Identities=21%  Similarity=0.301  Sum_probs=62.8

Q ss_pred             HHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       324 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      +++.|+|++|+..+++++..+|++..+++.+|.||..+|++++|...+++++..+|+++.++..++.+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            46789999999999999999999999999999999999999999999999999999998888877654

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.87  E-value=4.4e-08  Score=90.20  Aligned_cols=114  Identities=14%  Similarity=0.127  Sum_probs=95.4

Q ss_pred             HHHHHhhhHH-hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          265 RTIKNSGNEY-FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       265 ~~~~~~G~~~-~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+..+..+ ++.|+|++|+..|++.+...+.             .+....+++.+|.+|+..++|++|+..+++++..
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~-------------s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~  209 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPD-------------STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN  209 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC-------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456666665 6679999999999999998332             2233578999999999999999999999999988


Q ss_pred             CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          344 EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       344 ~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      .|++   +.+++.+|.++..+|++++|+..|+++++..|+...+.....++
T Consensus       210 yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        210 YPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             CCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            8774   67899999999999999999999999999999988766554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.87  E-value=3e-08  Score=107.05  Aligned_cols=123  Identities=26%  Similarity=0.391  Sum_probs=106.8

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|++++|+..|+++++.                .|....++..+|.+++..+++++|+..++++++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       124 AAELLALRGLAYLGLGQLELAQKSYEQALAI----------------DPRSLYAKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4667888999999999999999999999988                566677888899999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..+..++...++..+.
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A  246 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEA  246 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999999999999999999999999888888888877766655444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.86  E-value=5.9e-08  Score=95.24  Aligned_cols=116  Identities=15%  Similarity=0.152  Sum_probs=67.7

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..+++.+++++|+..|.++++.                .|....+++.+|.++.+.|++++|+..+++++..+|
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p  245 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAA----------------DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP  245 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhH----------------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence            3456677777777777777777777766                333444555566666666666666666666666555


Q ss_pred             CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          346 NN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       346 ~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      .+ ..++..++.+|..+|++++|+..++++++..|+...+ ..++.++...++.
T Consensus       246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~  298 (389)
T PRK11788        246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGP  298 (389)
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCH
Confidence            44 2345555666666666666666666666666554333 4444444444333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.84  E-value=5.3e-08  Score=95.59  Aligned_cols=90  Identities=13%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAFVR  392 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~  392 (414)
                      ...+.++|.++.+.+++++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++.+|.+ ..++..+..++
T Consensus       180 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~  259 (389)
T PRK11788        180 AHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECY  259 (389)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHH
Confidence            34577888888899999999999999999988888899999999999999999999999999888876 45567777777


Q ss_pred             HHHHHHHHHHH
Q psy793          393 KQMRHHLNLEK  403 (414)
Q Consensus       393 ~~~~~~~~~~k  403 (414)
                      ...++..+..+
T Consensus       260 ~~~g~~~~A~~  270 (389)
T PRK11788        260 QALGDEAEGLE  270 (389)
T ss_pred             HHcCCHHHHHH
Confidence            77666655544

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.83  E-value=2.9e-08  Score=110.55  Aligned_cols=125  Identities=14%  Similarity=0.170  Sum_probs=73.7

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHH-------HHHhhHHHH--------------HHH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKT-------QQKHFRSYY--------------TAA  316 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~-------~~~~~~~~~--------------~~~  316 (414)
                      ..|..++..|++++|+..|+++++..+.....           ...+       +.....|..              ..+
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~  353 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL  353 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence            45777888888888888888888762211100           0000       001111110              011


Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ...++.++++.+++++|+..++++++++|+++.+++.+|.++..+|++++|++.|+++++++|++..++..+..++.
T Consensus       354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        354 LIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            23345555666666666666666666666666677777777777777777777777777777777776666666654

>KOG0550|consensus

Probab=98.83  E-value=4.9e-08  Score=91.65  Aligned_cols=137  Identities=13%  Similarity=0.159  Sum_probs=118.0

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..++-+|..++-..+.+.|+.+|+++|++-+    +..........+.....+-+.|.-.++.|+|+.|.+.|+.+|.
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldp----dh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~  277 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDP----DHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALN  277 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccCh----hhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhc
Confidence            466788899999999999999999999999822    2223333444566678889999999999999999999999999


Q ss_pred             cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       343 ~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++|++    ++.|+++|.+...+|+..+|+.+.+.|+.++|....++...+.|+..+++.++.-+
T Consensus       278 idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~  342 (486)
T KOG0550|consen  278 IDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVE  342 (486)
T ss_pred             CCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99986    57899999999999999999999999999999999999999999988888877544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.83  E-value=1.4e-07  Score=83.90  Aligned_cols=125  Identities=18%  Similarity=0.269  Sum_probs=97.7

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|.+|+..|++.+...+.             .+....+.+.+|.++++.++|.+|+..+++.++
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~-------------s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN-------------SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3677999999999999999999999999987543             345667889999999999999999999999999


Q ss_pred             cCCCCH---HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNV---KALFRRGRAQVSMN-----------NFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       343 ~~p~~~---~a~~~~g~~~~~lg-----------~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~~  400 (414)
                      ..|+++   .++|.+|.+++.+.           ...+|+..|+..++..|+.+   .+...+..+...+.+.+-
T Consensus        71 ~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~  145 (203)
T PF13525_consen   71 LYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHEL  145 (203)
T ss_dssp             H-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence            999875   58999999987664           34589999999999999985   455556666555554443

>KOG2076|consensus

Probab=98.83  E-value=9.5e-08  Score=97.46  Aligned_cols=122  Identities=12%  Similarity=0.178  Sum_probs=84.8

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+..+||.+|.+|++++|...+.++|+.                +|....+|+-||.||..+|+..+|+...-.|--
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq----------------dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH  201 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ----------------DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH  201 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CccchhhHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            3677899999999999999999999999998                566666666666666666666666666666666


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      ++|.+..-|.+++.....+|++..|.-+|.+|++++|.+.........++.+.++...
T Consensus       202 L~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~  259 (895)
T KOG2076|consen  202 LNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKR  259 (895)
T ss_pred             cCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHH
Confidence            6666666666666666666666666666666666666665555555555555555443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.81  E-value=2.3e-07  Score=84.75  Aligned_cols=125  Identities=14%  Similarity=0.220  Sum_probs=101.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.|+|++|+..|++.+...+.             .+....+.+++|.+|+++++|++|+..+++.++.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-------------s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            445788999999999999999999999987332             3455567899999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHH
Q psy793          344 EPNNV---KALFRRGRAQVSMN---------------N---FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL  399 (414)
Q Consensus       344 ~p~~~---~a~~~~g~~~~~lg---------------~---~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~  399 (414)
                      .|+++   .++|.+|.++..++               |   -.+|+..|++.++..|+..   ++...+..+...+.+.+
T Consensus        99 ~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e  178 (243)
T PRK10866         99 NPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYE  178 (243)
T ss_pred             CcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHH
Confidence            98775   58999999976664               1   2578899999999999874   56666666666666555


Q ss_pred             HH
Q psy793          400 NL  401 (414)
Q Consensus       400 ~~  401 (414)
                      -.
T Consensus       179 ~~  180 (243)
T PRK10866        179 LS  180 (243)
T ss_pred             HH
Confidence            43

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.81  E-value=7e-08  Score=100.25  Aligned_cols=114  Identities=6%  Similarity=-0.025  Sum_probs=101.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +....+.+..+.+.+++++|+..+++++..                .|.....++.+|.|+.++|+|++|+..|++++..
T Consensus       120 ~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~----------------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~  183 (694)
T PRK15179        120 SEAFILMLRGVKRQQGIEAGRAEIELYFSG----------------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQ  183 (694)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc
Confidence            566788999999999999999999999999                8999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRK  393 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~  393 (414)
                      +|++++++..+|.+++.+|+.++|...|++|++....-. .....+..+..
T Consensus       184 ~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  234 (694)
T PRK15179        184 HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLVDLNA  234 (694)
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999874433 33444444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.80  E-value=1.2e-07  Score=71.61  Aligned_cols=88  Identities=24%  Similarity=0.459  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +++++|.++...+++++|+..++++++..|.+..+++.+|.++...+++++|+..|++++++.|.+..++..++.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHH
Q psy793          396 RHHLNLEK  403 (414)
Q Consensus       396 ~~~~~~~k  403 (414)
                      ++..+..+
T Consensus        82 ~~~~~a~~   89 (100)
T cd00189          82 GKYEEALE   89 (100)
T ss_pred             HhHHHHHH
Confidence            87665443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.80  E-value=5.2e-08  Score=85.01  Aligned_cols=119  Identities=19%  Similarity=0.136  Sum_probs=71.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+..++..|.+.|+.+.|-+.|++|+.+                +|....+++|.|+-+..+|+|++|...+++|+..
T Consensus        69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----------------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~  132 (250)
T COG3063          69 YLAHLVRAHYYQKLGENDLADESYRKALSL----------------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD  132 (250)
T ss_pred             HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----------------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC
Confidence            344555666666666666666666666666                5555566666666666666666666666666643


Q ss_pred             --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          344 --EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       344 --~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                        .+.-+..+-++|.|.++.|+++.|..+|+++++++|+++.....+...+...+++
T Consensus       133 P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y  189 (250)
T COG3063         133 PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDY  189 (250)
T ss_pred             CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccc
Confidence              2334556666666666666666666666666666666665555555554444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.79  E-value=1.2e-08  Score=73.07  Aligned_cols=64  Identities=13%  Similarity=0.253  Sum_probs=59.4

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      .+|..+++.|+|++|+..|+++++.                .|....+++.+|.|+..+|++++|+..++++++++|+++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQ----------------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCC----------------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            5789999999999999999999998                788999999999999999999999999999999999875

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.77  E-value=1.7e-07  Score=79.15  Aligned_cols=108  Identities=24%  Similarity=0.350  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHhcCCCCHH
Q psy793          280 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILLMEPNNVK  349 (414)
Q Consensus       280 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~~~~al~~~p~~~~  349 (414)
                      |+.|.+.|+.....                +|.+...++|=|.+++.+.+          +++|+.-+++||.++|+...
T Consensus         7 FE~ark~aea~y~~----------------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd   70 (186)
T PF06552_consen    7 FEHARKKAEAAYAK----------------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD   70 (186)
T ss_dssp             HHHHHHHHHHHHHH-----------------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred             HHHHHHHHHHHHHh----------------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH
Confidence            67888888888877                78888888888888887754          67889999999999999999


Q ss_pred             HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          350 ALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       350 a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      |++.+|.+|..++.           |++|..+|++|.+.+|+|...+.-|......-.-..+.+|
T Consensus        71 Alw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~  135 (186)
T PF06552_consen   71 ALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHK  135 (186)
T ss_dssp             HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999998865           7899999999999999999999888877544333344333

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.74  E-value=1.3e-07  Score=81.53  Aligned_cols=112  Identities=15%  Similarity=0.093  Sum_probs=91.9

Q ss_pred             hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---
Q psy793          271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---  347 (414)
Q Consensus       271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---  347 (414)
                      .+.+|-.+.|..+...+.+.++.   ..           ......+|+++|.++..+++|++|+..+++++.+.|+.   
T Consensus         6 ~~~~~~~~~~~~~~~~l~~~~~~---~~-----------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~   71 (168)
T CHL00033          6 RNDNFIDKTFTIVADILLRILPT---TS-----------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR   71 (168)
T ss_pred             ccccccccccccchhhhhHhccC---Cc-----------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence            44556666677776666444432   11           34567889999999999999999999999999997653   


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +.+|+++|.++..+|++++|+..|+++++++|.+...+..++.++..++
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            4589999999999999999999999999999999999999998888444

>KOG1125|consensus

Probab=98.73  E-value=5.4e-08  Score=94.97  Aligned_cols=96  Identities=16%  Similarity=0.178  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      .+..++..||..|...++|++|+.+++.||..+|++...|.|+|-++..-.+.++|+..|++|++|.|+...++++|+..
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS  507 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGIS  507 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhh
Confidence            55688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy793          392 RKQMRHHLNLEKMTYA  407 (414)
Q Consensus       392 ~~~~~~~~~~~k~~~~  407 (414)
                      ...++.+++.-+....
T Consensus       508 ~mNlG~ykEA~~hlL~  523 (579)
T KOG1125|consen  508 CMNLGAYKEAVKHLLE  523 (579)
T ss_pred             hhhhhhHHHHHHHHHH
Confidence            9999999998876655

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.73  E-value=1.1e-07  Score=92.14  Aligned_cols=87  Identities=17%  Similarity=0.268  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +...|..++..++|++|+..|++||+++|+++.+|+.+|.+|..+|++++|+.++++|++++|++..++..++.++..++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q psy793          397 HHLNLEK  403 (414)
Q Consensus       397 ~~~~~~k  403 (414)
                      +..+..+
T Consensus        85 ~~~eA~~   91 (356)
T PLN03088         85 EYQTAKA   91 (356)
T ss_pred             CHHHHHH
Confidence            8876654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.72  E-value=1.9e-07  Score=80.88  Aligned_cols=89  Identities=19%  Similarity=0.255  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      .+....+++++|.++...+++++|+.++++++.+.|+.   ..+++.+|.++..+|++++|+..|++++++.|++..++.
T Consensus        31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  110 (172)
T PRK02603         31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALN  110 (172)
T ss_pred             HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            56777899999999999999999999999999887653   468999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy793          387 EIAFVRKQMRHH  398 (414)
Q Consensus       387 ~l~~~~~~~~~~  398 (414)
                      .++.++..+++.
T Consensus       111 ~lg~~~~~~g~~  122 (172)
T PRK02603        111 NIAVIYHKRGEK  122 (172)
T ss_pred             HHHHHHHHcCCh
Confidence            999888776653

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.72  E-value=3.2e-08  Score=95.30  Aligned_cols=69  Identities=13%  Similarity=0.107  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA---LFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      +|....+++|+|.+|+++++|++|+..|++||+++|++..+   ||++|.||..+|++++|+.+|++|+++.
T Consensus        71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels  142 (453)
T PLN03098         71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            78889999999999999999999999999999999999865   9999999999999999999999999983

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.71  E-value=2.8e-07  Score=88.63  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=116.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ....+-.+..++..++++.|...++..+..                .|.+...+.-++..+++.++..+|++.+++++.+
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~----------------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l  369 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA----------------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL  369 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            445666777888888888888888887766                6777888888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  411 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  411 (414)
                      +|+.....+++|.+|+..|++.+|+..++..+.-+|+|+..|..|+..+..+++..+........+|-
T Consensus       370 ~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~  437 (484)
T COG4783         370 DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYAL  437 (484)
T ss_pred             CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999888876665555543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.71  E-value=3.7e-08  Score=73.21  Aligned_cols=67  Identities=25%  Similarity=0.440  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      |....++.++|.+|..+|+|++|+.++++++++.       |.-+.+++++|.++..+|++++|+..+++|+++
T Consensus         2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5567899999999999999999999999999762       223678999999999999999999999999986

...

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.71  E-value=1.3e-07  Score=100.81  Aligned_cols=109  Identities=11%  Similarity=0.045  Sum_probs=101.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+...|..+...|++++|+..+++++..                .|....++.++|.++...|++++|+..+++++.+
T Consensus       359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~~----------------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l  422 (765)
T PRK10049        359 LQGQSLLSQVAKYSNDLPQAEMRARELAYN----------------APGNQGLRIDYASVLQARGWPRAAENELKKAEVL  422 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            345667888999999999999999999998                7777899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  388 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  388 (414)
                      +|++..+++.+|.++..++++++|.+.++++++..|+++.+...-
T Consensus       423 ~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~  467 (765)
T PRK10049        423 EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA  467 (765)
T ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999776543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=2.4e-07  Score=84.54  Aligned_cols=115  Identities=23%  Similarity=0.287  Sum_probs=100.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDI  340 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~a  340 (414)
                      ++.+.-.|..|+..+++..|...|.+|+++                .+.+..++..+|.++....   .-.++...++++
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL----------------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~a  219 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRL----------------AGDNPEILLGLAEALYYQAGQQMTAKARALLRQA  219 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            455777999999999999999999999999                7788888888888877755   477899999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      |.+||.++.+.+.+|..++..|+|.+|+..+++.+++.|.+..-...+......
T Consensus       220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999886655555544433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.71  E-value=1.3e-07  Score=70.21  Aligned_cols=73  Identities=19%  Similarity=0.251  Sum_probs=62.7

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+.+.|..++..|+|++|+.+|++|+.+......         ..+..+.++.|+|.|+..+|++++|++++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---------DHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999543331         145668899999999999999999999999999


Q ss_pred             hc
Q psy793          342 LM  343 (414)
Q Consensus       342 ~~  343 (414)
                      ++
T Consensus        74 ~i   75 (78)
T PF13424_consen   74 DI   75 (78)
T ss_dssp             HH
T ss_pred             hh
Confidence            76

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.71  E-value=7.4e-08  Score=83.15  Aligned_cols=108  Identities=17%  Similarity=0.146  Sum_probs=102.5

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.|..++++|+.|=..|-+.-|.-.|.+++.+                .|..+.+++-+|..+...++|+.|.+.++.++
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai----------------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~  126 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL  126 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc----------------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHh
Confidence            45778999999999999999999999999999                89999999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  385 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  385 (414)
                      ++||.+..++.++|.+++.-|+|+-|..++.+-.+-+|+|+---
T Consensus       127 ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~  170 (297)
T COG4785         127 ELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRS  170 (297)
T ss_pred             ccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHH
Confidence            99999999999999999999999999999999999999997433

>KOG4162|consensus

Probab=98.68  E-value=8.9e-08  Score=96.20  Aligned_cols=115  Identities=10%  Similarity=0.043  Sum_probs=66.0

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      ..+..+.+.+.-++|..+..+|-.+                .+.....|+.+|.++...|++.+|.+.|..|+.++|+++
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~----------------~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv  718 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKI----------------DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV  718 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhc----------------chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc
Confidence            3444444444445555555555555                455555566666666666666666666666666666666


Q ss_pred             HHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQ--DYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~--~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      .+.-.+|.++...|+-.-|.+  .+..+++++|.|.++|+.++.+..+.++..
T Consensus       719 ~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  719 PSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             HHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchH
Confidence            666666666666655555555  556666666666666666666655555544

>KOG2002|consensus

Probab=98.67  E-value=4.1e-07  Score=93.65  Aligned_cols=119  Identities=13%  Similarity=0.219  Sum_probs=107.9

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+.-.++-+|-.|+|..+...+.-|+....             ..+..+..++.+|.+|..+|+|++|..+|.++++.+
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-------------~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~  337 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTE-------------NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD  337 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-------------hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC
Confidence            4455688889999999999999999987621             156778889999999999999999999999999999


Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          345 PNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       345 p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +++ .-+++.+|+.|...|+++.|+.+|+++++.+|++.+....|+.++....
T Consensus       338 ~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  338 NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            998 8899999999999999999999999999999999999999999998774

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.66  E-value=3.4e-07  Score=81.51  Aligned_cols=99  Identities=17%  Similarity=0.221  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .+....++.-++...+..|+|.+|+..+.++..++|++.++|.-+|.+|.++|++++|...|.+++++.|+++.+..+++
T Consensus        96 ~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlg  175 (257)
T COG5010          96 YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLG  175 (257)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHH
Confidence            45555566668999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q psy793          390 FVRKQMRHHLNLEKMTYAR  408 (414)
Q Consensus       390 ~~~~~~~~~~~~~k~~~~~  408 (414)
                      ..+..-++.+..++....-
T Consensus       176 ms~~L~gd~~~A~~lll~a  194 (257)
T COG5010         176 MSLLLRGDLEDAETLLLPA  194 (257)
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            9999888888887765543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.66  E-value=3.1e-07  Score=97.22  Aligned_cols=121  Identities=12%  Similarity=-0.013  Sum_probs=70.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHHHHHhh-----H--HHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQKHF-----R--SYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~~~~~~-----~--~~~~~~~~nla~~~~  325 (414)
                      +...+..+...+++|+|..|+..|+++++..+.....           ...++....     .  +.....+..+|.++.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            4467889999999999999999999999884332100           000111100     0  111222233344555


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                      .+|+|++|++.++++++.+|+++.+++.++.++..+++.++|+..++++...+|.+...
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~  172 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY  172 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH
Confidence            55666666666666666666666555555555566666666666666666665554443

>KOG1128|consensus

Probab=98.66  E-value=1.1e-07  Score=95.17  Aligned_cols=123  Identities=11%  Similarity=0.185  Sum_probs=107.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +++.+..|+..+.+++|++|.++++.++++                .|.....|+++|.|.+++++++.|.++|.+++.+
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~----------------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL  548 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEI----------------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL  548 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhc----------------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence            344455666677789999999999999999                8899999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|++..+|.+++.+|..+++-.+|...++.|++.+-++..++.+...+..+++...+.-
T Consensus       549 ~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  549 EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHH
Confidence            99999999999999999999999999999999999888888888888877777665543

>KOG1840|consensus

Probab=98.64  E-value=3.6e-07  Score=90.88  Aligned_cols=134  Identities=19%  Similarity=0.206  Sum_probs=111.2

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..|...++|.+|+..|++|+.+....-        -...|..+.++.|||.+|.+.|+|++|..+|++|+
T Consensus       239 ~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~--------G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  239 VVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF--------GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            3455566799999999999999999999999965322        12257888999999999999999999999999999


Q ss_pred             hcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCC---HHHHHHHHHHHHHHHHHHHHHH
Q psy793          342 LME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PND---QQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       342 ~~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~~---~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++-        |.-...+..++..+..++++++|...|++++++.     +++   ..+..+|+.++..+++..+.+.
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~  388 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE  388 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH
Confidence            773        3335678889999999999999999999999864     233   5678899999999998888765

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.63  E-value=4.6e-07  Score=72.73  Aligned_cols=88  Identities=16%  Similarity=0.248  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEI  388 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l  388 (414)
                      ..++++|..+.+.+++++|+..|++++..+|++   ..+++.+|.++...+++++|+..|++++...|++   ..++..+
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~   82 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence            567899999999999999999999999999876   5799999999999999999999999999999886   5778888


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          389 AFVRKQMRHHLNLE  402 (414)
Q Consensus       389 ~~~~~~~~~~~~~~  402 (414)
                      +.++..+++..+..
T Consensus        83 ~~~~~~~~~~~~A~   96 (119)
T TIGR02795        83 GMSLQELGDKEKAK   96 (119)
T ss_pred             HHHHHHhCChHHHH
Confidence            88888776665544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.61  E-value=8.7e-08  Score=69.09  Aligned_cols=67  Identities=22%  Similarity=0.215  Sum_probs=60.6

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy793          274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  353 (414)
Q Consensus       274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  353 (414)
                      +++.|+|++|+..|++++..                .|....+++.+|.||+++|++++|...+++++..+|+++..+.-
T Consensus         1 ll~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQR----------------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHH----------------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            46789999999999999999                88899999999999999999999999999999999998877766


Q ss_pred             HHH
Q psy793          354 RGR  356 (414)
Q Consensus       354 ~g~  356 (414)
                      ++.
T Consensus        65 ~a~   67 (68)
T PF14559_consen   65 LAQ   67 (68)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            664

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.59  E-value=5.9e-07  Score=75.42  Aligned_cols=94  Identities=15%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      ....|..++..|+|++|+..|++++...+  .           ......+.+++|.+++.+++|++|+..++. +.-.+.
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~--d-----------~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~  116 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANAP--D-----------PELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAF  116 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCC--C-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcch
Confidence            34455555555555555555555554310  0           122333445555555555555555555533 222223


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQA  374 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~a  374 (414)
                      .+.++..+|.++..+|++++|+..|++|
T Consensus       117 ~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  117 KALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            3344445555555555555555555554

>KOG1840|consensus

Probab=98.58  E-value=9.3e-07  Score=87.99  Aligned_cols=134  Identities=18%  Similarity=0.224  Sum_probs=108.3

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..+.++|..|.+.|+|.+|..++++|+++.....        ....+.....+.+++..+..++++++|+.+++++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~--------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a  351 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL--------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA  351 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh--------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            35678899999999999999999999999999965411        1225666778999999999999999999999999


Q ss_pred             HhcC-----C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          341 LLME-----P---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL--------PNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       341 l~~~-----p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~--------P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +++-     +   .-++.+.++|.+|+.+|+|++|...|++|+.+.        +........++..+.+.+.+.+.+
T Consensus       352 l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~  429 (508)
T KOG1840|consen  352 LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAE  429 (508)
T ss_pred             HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHH
Confidence            9762     2   336788899999999999999999999999875        223456667777777666666544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.57  E-value=2.6e-07  Score=67.58  Aligned_cols=70  Identities=16%  Similarity=0.209  Sum_probs=64.5

Q ss_pred             hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH
Q psy793          271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  350 (414)
Q Consensus       271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a  350 (414)
                      .+.|+..++|+.|+..+++++.+                .|....++..+|.|+.++|+|.+|+.+++++++..|++..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALEL----------------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh----------------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            46789999999999999999999                89999999999999999999999999999999999999887


Q ss_pred             HHHHHH
Q psy793          351 LFRRGR  356 (414)
Q Consensus       351 ~~~~g~  356 (414)
                      ..-++.
T Consensus        66 ~~~~a~   71 (73)
T PF13371_consen   66 RALRAM   71 (73)
T ss_pred             HHHHHh
Confidence            665543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.54  E-value=1.3e-06  Score=70.21  Aligned_cols=99  Identities=19%  Similarity=0.171  Sum_probs=86.7

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+++.|..+-..|+.++|+..|++|+..-  ..           .+....++.++|.++..+|++++|+..+++++...
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L~-----------~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~   68 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAG--LS-----------GADRRRALIQLASTLRNLGRYDEALALLEEALEEF   68 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-----------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            357888999999999999999999999851  01           35566799999999999999999999999999998


Q ss_pred             CC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          345 PN---NVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       345 p~---~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      |+   +......++.++..+|++++|+..+-.++.
T Consensus        69 p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   69 PDDELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             CCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88   778888899999999999999999988775

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=2.1e-06  Score=78.57  Aligned_cols=92  Identities=16%  Similarity=0.196  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-HHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-QQILKEIAF  390 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~-~~~~~~l~~  390 (414)
                      .....|..+|..++...+.+.|+..+.+|++-+|.++.|-.-+|.+....|+|+.|++.|+.+++-||+. +++...|..
T Consensus       178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~  257 (389)
T COG2956         178 EIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYE  257 (389)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHH
Confidence            4467899999999999999999999999999999999999999999999999999999999999999987 678889999


Q ss_pred             HHHHHHHHHHHHH
Q psy793          391 VRKQMRHHLNLEK  403 (414)
Q Consensus       391 ~~~~~~~~~~~~k  403 (414)
                      |+..+++..+-..
T Consensus       258 ~Y~~lg~~~~~~~  270 (389)
T COG2956         258 CYAQLGKPAEGLN  270 (389)
T ss_pred             HHHHhCCHHHHHH
Confidence            9998888776543

>KOG1310|consensus

Probab=98.52  E-value=4e-07  Score=87.92  Aligned_cols=125  Identities=21%  Similarity=0.222  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh---hCHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---KAYKRA  333 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---~~~~~A  333 (414)
                      .-++.+.++..+..||..|..+.+..|+..|.+++..                .+....+|.|+|.++++-   ++--.|
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~----------------~~~~~~~l~nraa~lmkRkW~~d~~~A  430 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQY----------------VPDAIYLLENRAAALMKRKWRGDSYLA  430 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhh----------------ccchhHHHHhHHHHHHhhhccccHHHH
Confidence            3456677888999999999999999999999999998                788889999999999884   466789


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       334 ~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +.+|..||+++|...||||+++.|+..++++.+|+.+...+....|.|........-+.+.+.+
T Consensus       431 lrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a  494 (758)
T KOG1310|consen  431 LRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA  494 (758)
T ss_pred             HHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence            9999999999999999999999999999999999999998888889776665555444444433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.50  E-value=1.1e-06  Score=79.28  Aligned_cols=114  Identities=12%  Similarity=0.187  Sum_probs=99.7

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+++.+..+++.|+|..|...|..-|.-.+.             .+....+++=||.|++.+|+|+.|...+..+++-.
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~-------------s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~  208 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPN-------------STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY  208 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC
Confidence            33899999999999999999999988877443             34556789999999999999999999999999988


Q ss_pred             CCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          345 PNNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       345 p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      |+++   .+++.+|.|...+|+-++|...|+++++-.|+...+......+
T Consensus       209 P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         209 PKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            7764   5799999999999999999999999999999998877655443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.49  E-value=1.8e-06  Score=83.34  Aligned_cols=65  Identities=20%  Similarity=0.155  Sum_probs=60.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHH---HHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA---ALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~---~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      +..+.++|..|++.|+|++|+..|++||++                +|....   +|+|+|.||.++|++++|+.++++|
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL----------------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA  138 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALEL----------------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA  138 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777999999999999999999999999999                677664   5999999999999999999999999


Q ss_pred             HhcC
Q psy793          341 LLME  344 (414)
Q Consensus       341 l~~~  344 (414)
                      +++.
T Consensus       139 Lels  142 (453)
T PLN03098        139 LRDY  142 (453)
T ss_pred             HHhc
Confidence            9983

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=1.6e-06  Score=83.58  Aligned_cols=109  Identities=18%  Similarity=0.180  Sum_probs=93.8

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      ..+..+++.++.++|++.+++++.+                +|....+..|+|.+|+++|++.+|+..++..+.-+|+++
T Consensus       345 ~~~~i~~~~nk~~~A~e~~~kal~l----------------~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         345 LAGDILLEANKAKEAIERLKKALAL----------------DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHhc----------------CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            4788999999999999999999999                888889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ..|..+|++|..+|+-.+|...+-..+.+.-.-..+...+..+..
T Consensus       409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999999999999888777777777777766655555555544443

>KOG2003|consensus

Probab=98.48  E-value=2.7e-07  Score=87.54  Aligned_cols=97  Identities=22%  Similarity=0.279  Sum_probs=90.3

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      +.||.+|++..|.+|++.|+.||..+++..           ....+.++.|++..+.++|.|+.|+..++.+++..| |-
T Consensus       242 nigni~~kkr~fskaikfyrmaldqvpsin-----------k~~rikil~nigvtfiq~gqy~dainsfdh~m~~~p-n~  309 (840)
T KOG2003|consen  242 NIGNIHFKKREFSKAIKFYRMALDQVPSIN-----------KDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAP-NF  309 (840)
T ss_pred             eecceeeehhhHHHHHHHHHHHHhhccccc-----------hhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCc-cH
Confidence            589999999999999999999999987776           788899999999999999999999999999999999 55


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      .+-+++-.|++..|+-++-.+.|++.+.+
T Consensus       310 ~a~~nl~i~~f~i~d~ekmkeaf~kli~i  338 (840)
T KOG2003|consen  310 IAALNLIICAFAIGDAEKMKEAFQKLIDI  338 (840)
T ss_pred             HhhhhhhhhheecCcHHHHHHHHHHHhcC
Confidence            66789999999999999999999999975

>KOG1129|consensus

Probab=98.48  E-value=3.3e-07  Score=83.76  Aligned_cols=135  Identities=12%  Similarity=0.135  Sum_probs=100.1

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHHHHH-------hhHHHHHHHHHHHHHHHHHhh
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQK-------HFRSYYTAALLNMAAVQLKFK  328 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~~~~-------~~~~~~~~~~~nla~~~~~l~  328 (414)
                      +...+..+-..+++++|+++|+.+++.-+.+.++           ..++...       ++......++.|+|.|.+-.+
T Consensus       293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaq  372 (478)
T KOG1129|consen  293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQ  372 (478)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhc
Confidence            3445555555566666666666666553322221           0111111       114455789999999999999


Q ss_pred             CHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          329 AYKRAINLCDDILLME--PN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       329 ~~~~A~~~~~~al~~~--p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +++-++..+++|+...  |+ -+..||++|.+....||+--|..+|+-|+.-+|++.++..+|+.+..+.++-.+.
T Consensus       373 Q~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  373 QIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             chhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            9999999999999774  32 3578999999999999999999999999999999999999999998877766554

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.47  E-value=2e-06  Score=90.59  Aligned_cols=114  Identities=14%  Similarity=0.130  Sum_probs=99.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+....+.+...+++++|+.....+++.                .|....+|+-+|..+++.+++.+|...  .++.+
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~----------------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~   92 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKE----------------HKKSISALYISGILSLSRRPLNDSNLL--NLIDS   92 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh----------------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhh
Confidence            455777888888999999999999999998                788889999999999988887777665  55555


Q ss_pred             CCCCH-------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          344 EPNNV-------------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       344 ~p~~~-------------------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      -+.+.                   .|++.+|.||-.+|++++|...|+++++++|+|+.+.++++-.+...
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~  163 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE  163 (906)
T ss_pred             cccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh
Confidence            44444                   89999999999999999999999999999999999999999998887

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.46  E-value=6.8e-07  Score=83.76  Aligned_cols=122  Identities=13%  Similarity=0.185  Sum_probs=96.0

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      +......+...++++++...+.++.....              .+....+|..+|.++.+.|++++|+.+++++|+++|+
T Consensus       113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~--------------~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  113 LLSALQLYYRLGDYDEAEELLEKLEELPA--------------APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             -----H-HHHTT-HHHHHHHHHHHHH-T-----------------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             hhHHHHHHHHHhHHHHHHHHHHHHHhccC--------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            44455677888999999999988775411              2456778999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +..+...++.++...|+++++...++...+..|.++..+..++.++..+++..+.-
T Consensus       179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al  234 (280)
T PF13429_consen  179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEAL  234 (280)
T ss_dssp             -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccc
Confidence            99999999999999999999999999999988999999999999999888776653

>KOG3060|consensus

Probab=98.41  E-value=8.4e-06  Score=72.35  Aligned_cols=136  Identities=17%  Similarity=0.108  Sum_probs=101.9

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC------------CcHH------HHHhhHHHHHHHHHHHHHHHHHhh
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------QSKT------QQKHFRSYYTAALLNMAAVQLKFK  328 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~------------~~~~------~~~~~~~~~~~~~~nla~~~~~l~  328 (414)
                      .+-.|..+-..|.|++|++.|+..|+--+.....            ...+      .-.+.-+.+..+|..+|..|+.++
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            4556778888899999999998877531110000            0011      111112455689999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|.+|.-++++.+-++|.++-.+.++|.+++-+|   +++-|.++|.++++++|.+..++..+-.+-..+.+....+
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~sk~~  245 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALAQISKAE  245 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999999988776   5677999999999999988888888877777766554443

>KOG1156|consensus

Probab=98.40  E-value=2.1e-06  Score=85.05  Aligned_cols=121  Identities=14%  Similarity=0.143  Sum_probs=107.9

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..++.+....|..++|...++..+..|.-                .|.....+.-.|..+..+|+-++|..++..++..|
T Consensus         8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k----------------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d   71 (700)
T KOG1156|consen    8 NALFRRALKCYETKQYKKGLKLIKQILKK----------------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND   71 (700)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHh----------------CCccchhHHhccchhhcccchHHHHHHHHHHhccC
Confidence            34777788888899999999998888886                56666777788889999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +.+.-+|.-+|..+..-.+|++|+++|+.|+.++|+|..+++.++.++.++++..-.
T Consensus        72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~  128 (700)
T KOG1156|consen   72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY  128 (700)
T ss_pred             cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence            999999999999999999999999999999999999999999999999999887653

>KOG1128|consensus

Probab=98.39  E-value=1.8e-06  Score=86.60  Aligned_cols=118  Identities=14%  Similarity=0.207  Sum_probs=96.7

Q ss_pred             hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH
Q psy793          271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  350 (414)
Q Consensus       271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a  350 (414)
                      ...|.-.||+-.--.+|++|+++.               +.....+...+|......++|.+|.++++..++++|-....
T Consensus       457 ~~lyc~LGDv~~d~s~yEkawEls---------------n~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~  521 (777)
T KOG1128|consen  457 PRLYCLLGDVLHDPSLYEKAWELS---------------NYISARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGT  521 (777)
T ss_pred             chhHHHhhhhccChHHHHHHHHHh---------------hhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCccchhH
Confidence            345555566666666666666662               22334455556666666899999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       351 ~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ||++|.|..++++++.|..+|.+++.++|++.++++++..++..+++..+.-+
T Consensus       522 wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~  574 (777)
T KOG1128|consen  522 WFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFR  574 (777)
T ss_pred             HHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999998888777644

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.38  E-value=8.3e-07  Score=66.97  Aligned_cols=77  Identities=18%  Similarity=0.284  Sum_probs=68.1

Q ss_pred             hhCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          327 FKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  404 (414)
Q Consensus       327 l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  404 (414)
                      .++|+.|+..++++++.+|.  +...++.+|.|++.+|+|++|+..+++ ++.+|.+......++.+..++++..+..+.
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            58899999999999999995  466788899999999999999999999 899999999999999999999998887653

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.38  E-value=2.4e-05  Score=61.14  Aligned_cols=107  Identities=12%  Similarity=0.221  Sum_probs=83.3

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh----
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL----  342 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~----  342 (414)
                      ....|...+..|.|++|...|.+|++...    ..+.++.-..+.-+.-|+..|+.++..+|+|++|+...+++|.    
T Consensus        12 aLs~ae~ql~~g~~~eAa~s~r~AM~~sr----tiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen   12 ALSDAERQLQDGAYEEAAASCRKAMEVSR----TIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHT-HHHHHHHHHHHHHHHT----TS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHhc----cCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            44577888889999999999999999843    2334444555667788999999999999999999999999984    


Q ss_pred             ---cCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          343 ---MEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       343 ---~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                         ++.+.    +.+-+++|.++..+|+.++|+..|+++-++
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence               45554    456789999999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.38  E-value=3.9e-06  Score=89.04  Aligned_cols=121  Identities=12%  Similarity=0.113  Sum_probs=101.9

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+...|..+...|+|++|+..|+++++.                +|....++..++.+|..++++++|+..+++++..+
T Consensus       103 ~~llalA~ly~~~gdyd~Aiely~kaL~~----------------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d  166 (822)
T PRK14574        103 RGLASAARAYRNEKRWDQALALWQSSLKK----------------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD  166 (822)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC
Confidence            44566788999999999999999999999                78888888899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      |.+... ..++.++..++++.+|+..|+++++++|++.++...+..+....+-.....
T Consensus       167 p~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~  223 (822)
T PRK14574        167 PTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPAL  223 (822)
T ss_pred             cchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence            985544 445555656788877999999999999999999888888776665554433

>TIGR00540 hemY_coli hemY protein

Probab=98.37  E-value=1.5e-05  Score=78.97  Aligned_cols=127  Identities=12%  Similarity=0.073  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ..+.+......|-..+..|+|+.|.+...++.+.                .|.....+.-.|.++.++|+++.|..++.+
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~----------------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~  143 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH----------------AAEPVLNLIKAAEAAQQRGDEARANQHLEE  143 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4556777888999999999999999999998887                444445566677788888888888888888


Q ss_pred             HHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          340 ILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       340 al~~~p~~~-~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +.+..|++. .+...++..+...|+++.|...+++.++.+|+++.+...+..++...++..+..
T Consensus       144 a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~  207 (409)
T TIGR00540       144 AAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALD  207 (409)
T ss_pred             HHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHH
Confidence            888777765 344456888888888888888888888888888888888888877777766443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK11906 transcriptional regulator; Provisional

Probab=98.35  E-value=7.6e-06  Score=79.27  Aligned_cols=119  Identities=13%  Similarity=0.007  Sum_probs=97.4

Q ss_pred             HHHhhhHHhhhc---CHHHHHHHHHHHH---HHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh---------hCHH
Q psy793          267 IKNSGNEYFKLN---RMHDAQRKYKKAV---RYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF---------KAYK  331 (414)
Q Consensus       267 ~~~~G~~~~~~~---~~~~A~~~y~~Al---~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l---------~~~~  331 (414)
                      +..+|...+.++   ..+.|+.++.+|+   .+                +|.+..+|.-+|.||+..         .+-.
T Consensus       258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l----------------dp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~  321 (458)
T PRK11906        258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI----------------QTLKTECYCLLAECHMSLALHGKSELELAAQ  321 (458)
T ss_pred             HHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC----------------CcccHHHHHHHHHHHHHHHHhcCCCchHHHH
Confidence            344555544333   4578888899999   66                889999999999999876         2356


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       332 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +|....++|++++|.++.|++.+|.++...++++.|...|++|+.++|+...++...+.+..-.++.++.
T Consensus       322 ~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a  391 (458)
T PRK11906        322 KALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEA  391 (458)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHH
Confidence            7889999999999999999999999999999999999999999999999999999888876555554443

>KOG4162|consensus

Probab=98.35  E-value=6.5e-06  Score=83.13  Aligned_cols=101  Identities=17%  Similarity=0.199  Sum_probs=94.8

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH--HHHHHHhcC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN--LCDDILLME  344 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~--~~~~al~~~  344 (414)
                      ++..|..+..+|++.+|...|..|+.+                +|..+.+...+|.|+++.|+-.-|..  ....+++++
T Consensus       687 ~~~~G~~~~~~~~~~EA~~af~~Al~l----------------dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d  750 (799)
T KOG4162|consen  687 YYLRGLLLEVKGQLEEAKEAFLVALAL----------------DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD  750 (799)
T ss_pred             HHHhhHHHHHHHhhHHHHHHHHHHHhc----------------CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence            356788888999999999999999999                89999999999999999999888888  999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      |.|.++||.+|.++..+|+.+.|..+|+.|+++++.++-
T Consensus       751 p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  751 PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            999999999999999999999999999999999988763

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=1.9e-05  Score=66.17  Aligned_cols=130  Identities=11%  Similarity=0.075  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ..+.+...+......+..+++..+...+.+.+.-.+.             .+.-..+.+.+|.+++..|++++|+..++.
T Consensus         7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPS-------------SPYAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4455777777788888889998887777777765221             335567889999999999999999999999


Q ss_pred             HHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          340 ILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       340 al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++...|+.   ..+.+++|.+++.+|+|++|+..++. ..-.+-.+.+...++.++...++..+..+
T Consensus        74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~  139 (145)
T PF09976_consen   74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARA  139 (145)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHH
Confidence            99987655   45899999999999999999999976 33344456788888888888877766544

>KOG2002|consensus

Probab=98.34  E-value=6.2e-06  Score=85.18  Aligned_cols=132  Identities=16%  Similarity=0.165  Sum_probs=111.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+.+.|..+|..|++..|...+.+|+..+.....   .++.   ....++..+|+|.|+-.++++..|.+.|..+++.
T Consensus       452 ~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n---~de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke  525 (1018)
T KOG2002|consen  452 PEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVAN---KDEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE  525 (1018)
T ss_pred             HHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcC---cccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            355888999999999999999999999988432110   0000   2234778999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .|..+.+|.|+|......++..+|...++.++..+..|+.++..++.++....+....
T Consensus       526 hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a  583 (1018)
T KOG2002|consen  526 HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA  583 (1018)
T ss_pred             CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence            9999999999997777889999999999999999999999999999887766655443

>PRK15331 chaperone protein SicA; Provisional

Probab=98.32  E-value=1.1e-05  Score=67.75  Aligned_cols=99  Identities=13%  Similarity=0.033  Sum_probs=89.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          305 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       305 ~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                      +...+.+......+..|.-++..|++++|...++-+..++|.+.+-++.+|.|+..+++|++|+..|-.|..++++|+..
T Consensus        28 ~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p  107 (165)
T PRK15331         28 DVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP  107 (165)
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc
Confidence            33344566777888899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy793          385 LKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       385 ~~~l~~~~~~~~~~~~~~k  403 (414)
                      ....+.|+..+++..+..+
T Consensus       108 ~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331        108 VFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             cchHHHHHHHhCCHHHHHH
Confidence            9999999998888777654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.30  E-value=1.5e-05  Score=80.53  Aligned_cols=119  Identities=11%  Similarity=0.075  Sum_probs=88.6

Q ss_pred             HHHHHHhhhHHhhhcC---HHHHHHHHHHHHHHHHhhccC----------------CcHHHH---H-------h--hHHH
Q psy793          264 IRTIKNSGNEYFKLNR---MHDAQRKYKKAVRYIKWYNQS----------------QSKTQQ---K-------H--FRSY  312 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~---~~~A~~~y~~Al~~~~~~~~~----------------~~~~~~---~-------~--~~~~  312 (414)
                      |-.+..+|..++.+.+   +..|+.+|++|+++-+.+...                ....+.   .       .  .++.
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            4556778888876544   889999999999874422111                000100   0       0  1223


Q ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      ...+|.-+|..+...+++++|...+++|+.++| +..+|..+|.++...|++++|+..|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            346677788888888999999999999999998 5789999999999999999999999999999998875

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.29  E-value=3.6e-05  Score=75.88  Aligned_cols=127  Identities=10%  Similarity=0.057  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHH-HHHHHHhhCHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM-AAVQLKFKAYKRAINLC  337 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nl-a~~~~~l~~~~~A~~~~  337 (414)
                      ...+.+......|-..+..|+|++|.+...++-+.                .+ ...+++.+ +.+..+.|+++.|..++
T Consensus        79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----------------~~-~p~l~~llaA~aA~~~g~~~~A~~~l  141 (398)
T PRK10747         79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADH----------------AE-QPVVNYLLAAEAAQQRGDEARANQHL  141 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----------------cc-chHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            35566778888999999999999999766665543                11 12333334 55558899999999999


Q ss_pred             HHHHhcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          338 DDILLMEPNNVKAL-FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       338 ~~al~~~p~~~~a~-~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      .++.+.+|++..+. ...+..+...|+++.|+..++++.+.+|+++.+...+..++.+.++..+..
T Consensus       142 ~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~  207 (398)
T PRK10747        142 ERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLL  207 (398)
T ss_pred             HHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            99998888875443 455888888999999999999999999999988888888887777666543

>KOG3060|consensus

Probab=98.28  E-value=3.4e-05  Score=68.58  Aligned_cols=85  Identities=13%  Similarity=0.160  Sum_probs=74.2

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhcC
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDILLME  344 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~al~~~  344 (414)
                      .+.++.|+..++|++|.-||++.+-+                .|....++..+|.+++-+|   ++.-|.++|.++++++
T Consensus       158 ~eLaeiY~~~~~f~kA~fClEE~ll~----------------~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  158 HELAEIYLSEGDFEKAAFCLEELLLI----------------QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            34799999999999999999999988                8888888999999888766   5888999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGL  368 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~  368 (414)
                      |.+..++|.+..|..++-+...+.
T Consensus       222 ~~~~ral~GI~lc~~~la~~sk~~  245 (289)
T KOG3060|consen  222 PKNLRALFGIYLCGSALAQISKAE  245 (289)
T ss_pred             hHhHHHHHHHHHHHHHHHHHhHHH
Confidence            999999999999888776555544

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.27  E-value=1.4e-05  Score=64.23  Aligned_cols=90  Identities=17%  Similarity=0.194  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQILKEI  388 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~---~~~~~~~l  388 (414)
                      .+++++|.++-.+|+.++|+..|++++......   ..++..+|.++..+|++++|+..+++++.-.|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999986444   579999999999999999999999999999898   77777777


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy793          389 AFVRKQMRHHLNLEKM  404 (414)
Q Consensus       389 ~~~~~~~~~~~~~~k~  404 (414)
                      +.+....++..+.-..
T Consensus        82 Al~L~~~gr~~eAl~~   97 (120)
T PF12688_consen   82 ALALYNLGRPKEALEW   97 (120)
T ss_pred             HHHHHHCCCHHHHHHH
Confidence            7777777777665443

>KOG2076|consensus

Probab=98.27  E-value=1.6e-05  Score=81.60  Aligned_cols=99  Identities=13%  Similarity=0.164  Sum_probs=93.4

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..++.+|..|-.+|+.++|+..+..|-.+                +|.....|..++....+++.+++|.-+|.+||+++
T Consensus       174 ~ay~tL~~IyEqrGd~eK~l~~~llAAHL----------------~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~  237 (895)
T KOG2076|consen  174 IAYYTLGEIYEQRGDIEKALNFWLLAAHL----------------NPKDYELWKRLADLSEQLGNINQARYCYSRAIQAN  237 (895)
T ss_pred             hhHHHHHHHHHHcccHHHHHHHHHHHHhc----------------CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            44677899999999999999999988888                77778999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      |.+.+.+++++..|..+|++..|+..|.+++++.|
T Consensus       238 p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  238 PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999999999999999

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.25  E-value=2.6e-05  Score=71.61  Aligned_cols=124  Identities=9%  Similarity=0.148  Sum_probs=108.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      ....+...|..|++.|-++.|...|...++.                ......++.-+...|.+.++|++|++..++..+
T Consensus       106 r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de----------------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k  169 (389)
T COG2956         106 RLLALQQLGRDYMAAGLLDRAEDIFNQLVDE----------------GEFAEGALQQLLNIYQATREWEKAIDVAERLVK  169 (389)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcc----------------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            4677889999999999999999999888875                455567888899999999999999999999999


Q ss_pred             cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       343 ~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +.+..     +.-|+-+|..+....+.+.|+..+++|++.+|.+..+--.++.+....+++.+.-
T Consensus       170 ~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV  234 (389)
T COG2956         170 LGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAV  234 (389)
T ss_pred             cCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHH
Confidence            98765     3467789999999999999999999999999999998888888888777776543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.23  E-value=1.3e-05  Score=74.00  Aligned_cols=94  Identities=11%  Similarity=0.136  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHH-HHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHH
Q psy793          314 TAALLNMAAVQ-LKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILK  386 (414)
Q Consensus       314 ~~~~~nla~~~-~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~  386 (414)
                      ...+++.|..+ ++.++|++|+..|+..++..|++   +.++|.+|.+|+.+|++++|+..|+++++..|++   ++++.
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            35567777776 56799999999999999999988   5799999999999999999999999999998885   67778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q psy793          387 EIAFVRKQMRHHLNLEKMTYAR  408 (414)
Q Consensus       387 ~l~~~~~~~~~~~~~~k~~~~~  408 (414)
                      .++.++..+++..+. ++.|..
T Consensus       222 klg~~~~~~g~~~~A-~~~~~~  242 (263)
T PRK10803        222 KVGVIMQDKGDTAKA-KAVYQQ  242 (263)
T ss_pred             HHHHHHHHcCCHHHH-HHHHHH
Confidence            888888766544443 334443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.23  E-value=8.1e-06  Score=79.04  Aligned_cols=100  Identities=10%  Similarity=0.026  Sum_probs=88.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+...|..+...|++++|+..+++++++                .|....++..+|.++...|++++|+..+++++..
T Consensus       114 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~----------------~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~  177 (355)
T cd05804         114 WYLLGMLAFGLEEAGQYDRAEEAARRALEL----------------NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDT  177 (355)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence            344567888999999999999999999999                6777888999999999999999999999999999


Q ss_pred             CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          344 EPNNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       344 ~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      .|.++    ..|+.+|.++..+|++++|+..|++++...|
T Consensus       178 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         178 WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            87433    3566899999999999999999999987776

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0543|consensus

Probab=98.22  E-value=6e-06  Score=78.15  Aligned_cols=97  Identities=20%  Similarity=0.224  Sum_probs=87.8

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      +.+.+-.+.|.+.|.+|+...+++|++                ++.++.+++.+|.|++.+++|+.|+.++++|++++|.
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~----------------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLEL----------------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhc----------------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            567889999999999999999999999                9999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhCC
Q psy793          347 NVKALFRRGRAQVSMNNFEQG-LQDYEQALDLLP  379 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A-~~~~~~al~l~P  379 (414)
                      |-.+...+..|.....++.+. .+.|.+.+..-+
T Consensus       324 Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  324 NKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence            988888888888888777665 778888887654

>KOG1129|consensus

Probab=98.22  E-value=9.1e-07  Score=80.93  Aligned_cols=123  Identities=15%  Similarity=0.170  Sum_probs=87.0

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +..+.+.....+|-+-.+...|+..|.+.++.                -|..+..+..+|.++..|+++++|+++|+.++
T Consensus       254 ~~~dTfllLskvY~ridQP~~AL~~~~~gld~----------------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vl  317 (478)
T KOG1129|consen  254 PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS----------------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVL  317 (478)
T ss_pred             CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc----------------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence            34566778888999999999999999999988                67778888888888888888888888888888


Q ss_pred             hcCCCCHH----------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHH
Q psy793          342 LMEPNNVK----------------------------------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQI  384 (414)
Q Consensus       342 ~~~p~~~~----------------------------------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~---~~~~  384 (414)
                      +++|.|.+                                  .+.++|.|++.-++++-++..|++|+...-+   -.++
T Consensus       318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDv  397 (478)
T KOG1129|consen  318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADV  397 (478)
T ss_pred             hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhh
Confidence            88776644                                  4455566666556666666666666554321   1345


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy793          385 LKEIAFVRKQMRHHLN  400 (414)
Q Consensus       385 ~~~l~~~~~~~~~~~~  400 (414)
                      |.+++.+...+++...
T Consensus       398 WYNlg~vaV~iGD~nl  413 (478)
T KOG1129|consen  398 WYNLGFVAVTIGDFNL  413 (478)
T ss_pred             hhccceeEEeccchHH
Confidence            5555555555554443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.22  E-value=1.7e-05  Score=72.59  Aligned_cols=100  Identities=13%  Similarity=0.069  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      +|.+..-|.-||.+|+.++++..|...|.+|+++.|+|+..+..+|.+++.+.   .-.+|...+++++.++|.|..++.
T Consensus       152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            89999999999999999999999999999999999999999999999988774   457899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q psy793          387 EIAFVRKQMRHHLNLEKMTYARMF  410 (414)
Q Consensus       387 ~l~~~~~~~~~~~~~~k~~~~~~f  410 (414)
                      .|+......+++.+.-- .+..|.
T Consensus       232 lLA~~afe~g~~~~A~~-~Wq~lL  254 (287)
T COG4235         232 LLAFAAFEQGDYAEAAA-AWQMLL  254 (287)
T ss_pred             HHHHHHHHcccHHHHHH-HHHHHH
Confidence            99999888777766432 444443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.22  E-value=1.4e-05  Score=77.36  Aligned_cols=138  Identities=11%  Similarity=-0.024  Sum_probs=107.6

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC--------------CcHH---H----HHhhHHHHHHHHHHHHHHH
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--------------QSKT---Q----QKHFRSYYTAALLNMAAVQ  324 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~--------------~~~~---~----~~~~~~~~~~~~~nla~~~  324 (414)
                      .....|..++..|++++|+..++++++..+.....              ....   +    .....+....++..+|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            35567889999999999999999999864322200              0000   0    1122344456777899999


Q ss_pred             HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ----ILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~----~~~~l~~~~~~~~~~~~  400 (414)
                      ..+|++++|+..++++++++|+++.++..+|.+++.+|++++|+..+++++...|.+..    .+..++.++...++..+
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999875433    34467888887777766


Q ss_pred             HHH
Q psy793          401 LEK  403 (414)
Q Consensus       401 ~~k  403 (414)
                      ..+
T Consensus       205 A~~  207 (355)
T cd05804         205 ALA  207 (355)
T ss_pred             HHH
Confidence            654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.21  E-value=2.5e-06  Score=52.19  Aligned_cols=34  Identities=29%  Similarity=0.648  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      +++|+++|.++..++++++|+.+|++|++++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3567777777777777777777777777777753

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.20  E-value=3.1e-05  Score=72.62  Aligned_cols=111  Identities=14%  Similarity=0.180  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhhhHHhhh-cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~-~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ...+..+.+.|..|... +++++|+.+|++|+++.....          .......++.++|.++.++++|++|+..+++
T Consensus       111 ~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~----------~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  111 SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG----------SPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC----------ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            34578888999999999 999999999999999965444          1344567899999999999999999999999


Q ss_pred             HHhcCCC------CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          340 ILLMEPN------NVK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       340 al~~~p~------~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      +....-+      +++ .+++.+.|++..||+..|...+++....+|.-
T Consensus       181 ~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F  229 (282)
T PF14938_consen  181 VAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSF  229 (282)
T ss_dssp             HHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred             HHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            9865321      233 45678889999999999999999999999854

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.19  E-value=7.4e-05  Score=62.62  Aligned_cols=114  Identities=17%  Similarity=0.191  Sum_probs=90.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCC------cHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ------SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  337 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~------~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  337 (414)
                      ...+...|......++...++..+.+|+.+..-.-...      -......+......+...++..+...+++++|+..|
T Consensus         6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~   85 (146)
T PF03704_consen    6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLL   85 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Confidence            34455667777788899999999999998864221111      134556667888899999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          338 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       338 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      ++++.++|.+..+|..+-.+|..+|+..+|+..|+++.+.
T Consensus        86 ~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~  125 (146)
T PF03704_consen   86 QRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRR  125 (146)
T ss_dssp             HHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.18  E-value=2e-05  Score=73.93  Aligned_cols=132  Identities=14%  Similarity=0.112  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      +..+.+..+...|+.|-..++|++|..+|.+|..+.....          .......+|.+.+.||.+. ++++|+.+++
T Consensus        30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~----------~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~   98 (282)
T PF14938_consen   30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLG----------DKFEAAKAYEEAANCYKKG-DPDEAIECYE   98 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHHHHHHHHT-THHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHhh-CHHHHHHHHH
Confidence            4556678888899999999999999999999999854322          1344456788888888777 9999999999


Q ss_pred             HHHhcC-----CC-CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHH
Q psy793          339 DILLME-----PN-NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       339 ~al~~~-----p~-~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +|+.+-     +. -++++.++|.+|... +++++|+..|++|+++.-.+      ......++.++.+++++.+.
T Consensus        99 ~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen   99 KAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHH
Confidence            999762     11 256888999999998 99999999999999874221      34556677777777766554

>TIGR00540 hemY_coli hemY protein

Probab=98.16  E-value=1.6e-05  Score=78.77  Aligned_cols=128  Identities=10%  Similarity=-0.007  Sum_probs=100.2

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHH--HHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA--LLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ........+..+...|++++|+...+++++..                |.....  ..-+....+..++...++..++++
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~----------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~  325 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKL----------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQ  325 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC----------------CCcccchhHHHHHhhhcCCCChHHHHHHHHHH
Confidence            35567778999999999999999999999973                222211  122333344567889999999999


Q ss_pred             HhcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHH--HHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy793          341 LLMEPNNV--KALFRRGRAQVSMNNFEQGLQDYE--QALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  408 (414)
Q Consensus       341 l~~~p~~~--~a~~~~g~~~~~lg~~~~A~~~~~--~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  408 (414)
                      ++.+|+++  ..+..+|..++.+|+|++|.+.|+  ++++..|++..+. .++.++.++++..+. ++.|++
T Consensus       326 lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~~~~A-~~~~~~  395 (409)
T TIGR00540       326 AKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGDKAEA-AAMRQD  395 (409)
T ss_pred             HHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCCHHHH-HHHHHH
Confidence            99999999  788899999999999999999999  6888889776644 889998888886655 334443

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.14  E-value=1.2e-05  Score=77.93  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=42.1

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      +|.+++.+++..+|++...++|...|.+...+.-.|..+...++++.|+...++|.++.|++-..|..|+.++..+++.+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            44445455555555555555555555555555555555555555555555555555555555555555555555554444


Q ss_pred             H
Q psy793          400 N  400 (414)
Q Consensus       400 ~  400 (414)
                      +
T Consensus       286 ~  286 (395)
T PF09295_consen  286 N  286 (395)
T ss_pred             H
Confidence            4

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=98.13  E-value=6.7e-06  Score=53.64  Aligned_cols=42  Identities=21%  Similarity=0.253  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|..++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456677777777777777777777777777777777766654

>KOG4648|consensus

Probab=98.12  E-value=6.5e-06  Score=75.89  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      -..|.-|+++|+|++|+.+|.+++..+|.|+-.+.++|.+|+++..|..|..++..|+.|+-....+....+.++..++.
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~  180 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGN  180 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhh
Confidence            45788999999999999999999999999999999999999999999999999999999997777777777776666666


Q ss_pred             HHHH
Q psy793          398 HLNL  401 (414)
Q Consensus       398 ~~~~  401 (414)
                      ..+.
T Consensus       181 ~~EA  184 (536)
T KOG4648|consen  181 NMEA  184 (536)
T ss_pred             HHHH
Confidence            5554

>KOG1174|consensus

Probab=98.12  E-value=1.4e-05  Score=75.43  Aligned_cols=126  Identities=18%  Similarity=0.211  Sum_probs=104.7

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCC-------------c-------HHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ-------------S-------KTQQKHFRSYYTAALLNMAAVQLKFKA  329 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~-------------~-------~~~~~~~~~~~~~~~~nla~~~~~l~~  329 (414)
                      .-..|+..+.+.+|...-+.+++.++......             .       .+....+.|.+..+-..+|..+..-|.
T Consensus       374 L~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~  453 (564)
T KOG1174|consen  374 LFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGP  453 (564)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCc
Confidence            44567888999999999888888876544321             0       223334468888999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       330 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +..++..++++|...|+ ...|..+|..+...+.+++|+..|.+|+.++|++......+.++..+..
T Consensus       454 ~~D~i~LLe~~L~~~~D-~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  454 TKDIIKLLEKHLIIFPD-VNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             cchHHHHHHHHHhhccc-cHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHHHHHHhccC
Confidence            99999999999999885 4578899999999999999999999999999999999999988766543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=98.11  E-value=2.6e-06  Score=52.12  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=31.6

Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q psy793          336 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ  369 (414)
Q Consensus       336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~  369 (414)
                      +|++||+++|+++.+|+++|.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999963

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.09  E-value=8.6e-06  Score=49.68  Aligned_cols=34  Identities=32%  Similarity=0.633  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      +++++.+|.+++.+|++++|+..|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4577888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1130|consensus

Probab=98.08  E-value=3.2e-05  Score=73.05  Aligned_cols=130  Identities=13%  Similarity=0.156  Sum_probs=99.5

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      .+-+.+-+.||.|+-.|+|++||..-+.-|++.....          .....-.++.|+|.||.-+++++.|+++|++++
T Consensus       193 aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efG----------DrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl  262 (639)
T KOG1130|consen  193 AQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFG----------DRAAERRAHSNLGNCHIFLGNFELAIEHYKLTL  262 (639)
T ss_pred             hhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhh----------hHHHHHHhhcccchhhhhhcccHhHHHHHHHHH
Confidence            3445566789999999999999999999888855443          134455789999999999999999999999987


Q ss_pred             hcC----CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH
Q psy793          342 LME----PN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       342 ~~~----p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~------~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .+.    ..  .+..-|.+|.+|.-+.++++|+.++++-|.+.-.      ...+-.-|+.....++...+.
T Consensus       263 ~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kA  334 (639)
T KOG1130|consen  263 NLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKA  334 (639)
T ss_pred             HHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHH
Confidence            552    22  3556799999999999999999999998776432      234445566666666655443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.07  E-value=0.00014  Score=65.26  Aligned_cols=122  Identities=15%  Similarity=0.225  Sum_probs=96.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+.+.|...++.|+|++|+..|++.....+.             .|....+...++.++++.++|++|+...++-+.+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~-------------s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPF-------------SPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            567999999999999999999999888865222             3455678889999999999999999999999999


Q ss_pred             CCCCH---HHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHH
Q psy793          344 EPNNV---KALFRRGRAQVSMNN--------FEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHH  398 (414)
Q Consensus       344 ~p~~~---~a~~~~g~~~~~lg~--------~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~  398 (414)
                      .|.++   .++|-+|.+++..=+        -.+|+..|+..++..|+.+   .+...+..+...+...
T Consensus       101 yP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~  169 (254)
T COG4105         101 YPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGH  169 (254)
T ss_pred             CCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHH
Confidence            98765   578888999776522        3678999999999999985   4444444444444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.07  E-value=5.3e-05  Score=73.56  Aligned_cols=77  Identities=18%  Similarity=0.261  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      .|....++...|..+++.++++.|+..+++|..+.|++.++|+.+|.||..+|+|++|+..+..+--..+.+.....
T Consensus       230 ~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~~~  306 (395)
T PF09295_consen  230 NPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYKLK  306 (395)
T ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchhhh
Confidence            45567788889999999999999999999999999999999999999999999999999998877665555554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1173|consensus

Probab=98.07  E-value=1.5e-05  Score=78.11  Aligned_cols=124  Identities=18%  Similarity=0.182  Sum_probs=113.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +-.++..|--|+--+++.+|.++|.||..+                ++....+|...|-.|.-.++.++|+.+|.+|-++
T Consensus       312 a~sW~aVg~YYl~i~k~seARry~SKat~l----------------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl  375 (611)
T KOG1173|consen  312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL----------------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL  375 (611)
T ss_pred             CcchhhHHHHHHHhcCcHHHHHHHHHHhhc----------------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence            344677888899999999999999999999                9999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      -|......+.+|.=|+.+++++-|.+.|..|+.+.|+|+-+...++-+.-..+...+..+
T Consensus       376 ~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~  435 (611)
T KOG1173|consen  376 MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK  435 (611)
T ss_pred             ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH
Confidence            999999999999999999999999999999999999999999999888776666666544

>KOG1174|consensus

Probab=98.06  E-value=4.2e-05  Score=72.35  Aligned_cols=120  Identities=14%  Similarity=0.128  Sum_probs=86.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHH------
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC------  337 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~------  337 (414)
                      ...+..+|+.+...++.++|+..|+.|+.+                .|....+|..+-.||+..+++++|....      
T Consensus       334 ~~alilKG~lL~~~~R~~~A~IaFR~Aq~L----------------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~  397 (564)
T KOG1174|consen  334 HEALILKGRLLIALERHTQAVIAFRTAQML----------------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL  397 (564)
T ss_pred             chHHHhccHHHHhccchHHHHHHHHHHHhc----------------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999                7888888999989998888877776554      


Q ss_pred             ------------------------------HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793          338 ------------------------------DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       338 ------------------------------~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  387 (414)
                                                    +++|.++|...+|-..+|..+..-|.++++++.+++++...|+ ...+..
T Consensus       398 ~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-~~LH~~  476 (564)
T KOG1174|consen  398 FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-VNLHNH  476 (564)
T ss_pred             hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-cHHHHH
Confidence                                          4444555666666666666666666666666666666666553 334555


Q ss_pred             HHHHHHHHHHHHH
Q psy793          388 IAFVRKQMRHHLN  400 (414)
Q Consensus       388 l~~~~~~~~~~~~  400 (414)
                      |+.+.....+..+
T Consensus       477 Lgd~~~A~Ne~Q~  489 (564)
T KOG1174|consen  477 LGDIMRAQNEPQK  489 (564)
T ss_pred             HHHHHHHhhhHHH
Confidence            5555554444443

>KOG4234|consensus

Probab=98.04  E-value=4.3e-05  Score=65.57  Aligned_cols=81  Identities=19%  Similarity=0.231  Sum_probs=71.2

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhcCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          320 MAAVQLKFKAYKRAINLCDDILLMEPNNV-----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       320 la~~~~~l~~~~~A~~~~~~al~~~p~~~-----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      -|.-+++.|+|.+|..-|..||.+.|...     -.|.++|.|+..++.++.|+.++.+|++++|.+..++...+.++..
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            45667899999999999999999998753     4678999999999999999999999999999999999888888888


Q ss_pred             HHHHHH
Q psy793          395 MRHHLN  400 (414)
Q Consensus       395 ~~~~~~  400 (414)
                      +....+
T Consensus       181 ~ek~ee  186 (271)
T KOG4234|consen  181 MEKYEE  186 (271)
T ss_pred             hhhHHH
Confidence            755444

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.02  E-value=2.2e-05  Score=73.55  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=75.4

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHHhcCCCC
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK--AYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~A~~~~~~al~~~p~~  347 (414)
                      .-..+++.++++.|.+.++..-+.                +...+-...-.|++.+..|  ++.+|...|++..+..+.+
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~----------------~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t  200 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQI----------------DEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST  200 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCC----------------SCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc----------------CCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC
Confidence            445777888999998888776543                1222222233333444444  5888888888877777778


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      +..+..+|.|++.+|+|++|...+++|++.+|+++.+..++..+...+++.
T Consensus       201 ~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  201 PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            888888888888888888888888888888888888888877776665555

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.02  E-value=8.9e-06  Score=49.71  Aligned_cols=34  Identities=21%  Similarity=0.466  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      +.+|+++|.+|..+++|++|+.+|++||+++|++
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3579999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.01  E-value=4.8e-05  Score=76.62  Aligned_cols=92  Identities=16%  Similarity=0.136  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      ....+++.+|.+|..+|++++|+.+.++||+..|..+..|+.+|.++.+.|++++|...++.|..+++.|.-+.....+.
T Consensus       192 ~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy  271 (517)
T PF12569_consen  192 TLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKY  271 (517)
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHH
Q psy793          392 RKQMRHHLNLEK  403 (414)
Q Consensus       392 ~~~~~~~~~~~k  403 (414)
                      .-+.++.++.++
T Consensus       272 ~LRa~~~e~A~~  283 (517)
T PF12569_consen  272 LLRAGRIEEAEK  283 (517)
T ss_pred             HHHCCCHHHHHH
Confidence            877777666654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.99  E-value=7e-05  Score=67.75  Aligned_cols=86  Identities=15%  Similarity=0.183  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAF  390 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~  390 (414)
                      .++.|.-+++.|+|..|...+..-++..|++   +.|+|++|.+++.+|+|++|...|..+.+-.|..   ++++..|+.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            5677777789999999999999999999886   5799999999999999999999999999998876   577888888


Q ss_pred             HHHHHHHHHHHH
Q psy793          391 VRKQMRHHLNLE  402 (414)
Q Consensus       391 ~~~~~~~~~~~~  402 (414)
                      ++.++++..+..
T Consensus       224 ~~~~l~~~d~A~  235 (262)
T COG1729         224 SLGRLGNTDEAC  235 (262)
T ss_pred             HHHHhcCHHHHH
Confidence            888777665543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.98  E-value=3.2e-05  Score=78.20  Aligned_cols=40  Identities=8%  Similarity=-0.042  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA  350 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a  350 (414)
                      .+ ...+|..+|.++...|++++|++.+.+|+.++|..+..
T Consensus       450 ~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt~  489 (517)
T PRK10153        450 EM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENTL  489 (517)
T ss_pred             CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCchH
Confidence            56 46789999999999999999999999999999998853

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.95  E-value=0.00055  Score=60.87  Aligned_cols=125  Identities=12%  Similarity=0.144  Sum_probs=94.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC-----------HHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-----------YKR  332 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-----------~~~  332 (414)
                      .......|..+++.++|.+|+..|++-++..+.             .+....+++.+|.|++++..           ..+
T Consensus        42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~-------------~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~  108 (203)
T PF13525_consen   42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN-------------SPKADYALYMLGLSYYKQIPGILRSDRDQTSTRK  108 (203)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT--------------TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-------------CcchhhHHHHHHHHHHHhCccchhcccChHHHHH
Confidence            455778999999999999999999999988554             34456788888888777643           458


Q ss_pred             HHHHHHHHHhcCCCCHH-----------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHH
Q psy793          333 AINLCDDILLMEPNNVK-----------------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVR  392 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~-----------------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~  392 (414)
                      |+..++..+..-|++..                 --+..|.-|+..|.|..|+.-++.+++-.|+..   +++..+...+
T Consensus       109 A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y  188 (203)
T PF13525_consen  109 AIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAY  188 (203)
T ss_dssp             HHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHH
Confidence            99999999999998732                 123458889999999999999999999999875   4556666666


Q ss_pred             HHHHHHHHH
Q psy793          393 KQMRHHLNL  401 (414)
Q Consensus       393 ~~~~~~~~~  401 (414)
                      ..++.....
T Consensus       189 ~~l~~~~~a  197 (203)
T PF13525_consen  189 YKLGLKQAA  197 (203)
T ss_dssp             HHTT-HHHH
T ss_pred             HHhCChHHH
Confidence            666666543

>PRK11906 transcriptional regulator; Provisional

Probab=97.94  E-value=4.1e-05  Score=74.26  Aligned_cols=90  Identities=11%  Similarity=0.044  Sum_probs=80.4

Q ss_pred             cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793          278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  357 (414)
                      .+-.+|.+.-.+|+++                ++.+..++..+|.++...++++.|+..+++|+.++|+.+.+||.+|..
T Consensus       318 ~~~~~a~~~A~rAvel----------------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        318 LAAQKALELLDYVSDI----------------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             HHHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            3445566666666666                889999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          358 QVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       358 ~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      +...|+.++|.+.+++|++++|.-..
T Consensus       382 ~~~~G~~~~a~~~i~~alrLsP~~~~  407 (458)
T PRK11906        382 HFHNEKIEEARICIDKSLQLEPRRRK  407 (458)
T ss_pred             HHHcCCHHHHHHHHHHHhccCchhhH
Confidence            99999999999999999999997644

>KOG1156|consensus

Probab=97.94  E-value=6e-05  Score=74.99  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=95.3

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      +.+--.|-.+...|+-++|..+-..+++.                ++....||.-+|..+...++|++|+.+|+.||.++
T Consensus        42 eslAmkGL~L~~lg~~~ea~~~vr~glr~----------------d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~  105 (700)
T KOG1156|consen   42 ESLAMKGLTLNCLGKKEEAYELVRLGLRN----------------DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE  105 (700)
T ss_pred             hhHHhccchhhcccchHHHHHHHHHHhcc----------------CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC
Confidence            34555788888888888888888888876                66667788888888888888888888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      |+|-..|.-++....++++|+.....-.+.+++.|....-|..++..+..++++..
T Consensus       106 ~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen  106 KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888888888888887777666666655555543

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.94  E-value=8.4e-05  Score=73.31  Aligned_cols=118  Identities=8%  Similarity=0.072  Sum_probs=94.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      .......+..+...|+.++|.....+++.. ++             ++   .+..-  ...+..+++++++..+++.++.
T Consensus       263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~-------------~~---~l~~l--~~~l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        263 VALQVAMAEHLIECDDHDTAQQIILDGLKR-QY-------------DE---RLVLL--IPRLKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CC-------------CH---HHHHH--HhhccCCChHHHHHHHHHHHhh
Confidence            455677899999999999999999999874 11             12   11111  2223458999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +|+++..++.+|..+...++|++|.+.|+++++..|++.. ...++.++...++..+.
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A  380 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEA  380 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999998765 34688888877776655

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.93  E-value=1.9e-05  Score=51.46  Aligned_cols=43  Identities=21%  Similarity=0.212  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  357 (414)
                      .++..+|.+|..+|++++|+..++++++.+|+++.+++.+|.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            4688999999999999999999999999999999999998863

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.93  E-value=9.6e-05  Score=78.20  Aligned_cols=113  Identities=11%  Similarity=0.153  Sum_probs=98.7

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc-
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM-  343 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~-  343 (414)
                      .+++.+|..|-+.|++++|...|+++|++                +|.++.++.|+|..|... +.++|+.++.+|+.. 
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~----------------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~  179 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKA----------------DRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRF  179 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHH
Confidence            47888999999999999999999999999                899999999999999999 999999999999854 


Q ss_pred             -------------------CCCCHHHH--------HHHH------------HHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          344 -------------------EPNNVKAL--------FRRG------------RAQVSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       344 -------------------~p~~~~a~--------~~~g------------~~~~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                                         +|++..-+        -.++            .+|...++|++++..++.+|+++|.|..+
T Consensus       180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a  259 (906)
T PRK14720        180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKA  259 (906)
T ss_pred             HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhh
Confidence                               45543332        2224            78889999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy793          385 LKEIAFVRKQ  394 (414)
Q Consensus       385 ~~~l~~~~~~  394 (414)
                      +..+..++..
T Consensus       260 ~~~l~~~y~~  269 (906)
T PRK14720        260 REELIRFYKE  269 (906)
T ss_pred             HHHHHHHHHH
Confidence            9999999873

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.93  E-value=7.2e-05  Score=50.50  Aligned_cols=49  Identities=10%  Similarity=0.306  Sum_probs=40.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      ..+|.+|.+++++|+|++|....+.+|+++|+|..+......+..++.+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            4678999999999999999999999999999999999888888776654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.92  E-value=0.00026  Score=71.35  Aligned_cols=54  Identities=13%  Similarity=0.157  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +++|.+|+.|-.+|++++|+...++|++..|...+.....++++...++..+..
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa  248 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAA  248 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHH
Confidence            577999999999999999999999999999999999999999999888877654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.88  E-value=0.00024  Score=60.38  Aligned_cols=116  Identities=19%  Similarity=0.243  Sum_probs=95.0

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ......|+.+...|++.+|..+|.+++.=+               -..+..+++.+|.+.+.++++..|...+++..+.+
T Consensus        90 qnr~rLa~al~elGr~~EA~~hy~qalsG~---------------fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          90 QNRYRLANALAELGRYHEAVPHYQQALSGI---------------FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHhccc---------------cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            445678999999999999999999999641               12345678899999999999999999999999998


Q ss_pred             CC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          345 PN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       345 p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      |.  .+..++-+|.++..+|.+.+|...|+.++...|+ +.+.-.....+.+++
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qg  207 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQG  207 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhc
Confidence            85  5678889999999999999999999999999986 344444444444444

>KOG1127|consensus

Probab=97.85  E-value=9.5e-05  Score=76.83  Aligned_cols=139  Identities=14%  Similarity=0.095  Sum_probs=110.1

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc---------HHHHHhhHHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS---------KTQQKHFRSYYTAALLNMAA  322 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~---------~~~~~~~~~~~~~~~~nla~  322 (414)
                      .+..+..+|..|..--+...|..+|.+|.++-.....+           ..         ...+..........|..+|.
T Consensus       491 ~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~  570 (1238)
T KOG1127|consen  491 LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGP  570 (1238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence            46677788888888778889999999998762211100           00         00011111233445666899


Q ss_pred             HHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       323 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .|++.+++..|+..++.||..+|.+..+|..+|.+|...|+|.-|++.|.+|..++|.+...+...+.++..++++++.
T Consensus       571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998888774

>KOG4555|consensus

Probab=97.85  E-value=0.00034  Score=55.95  Aligned_cols=83  Identities=18%  Similarity=0.201  Sum_probs=66.9

Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHH
Q psy793          319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ----QILKEIAFVRKQ  394 (414)
Q Consensus       319 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~----~~~~~l~~~~~~  394 (414)
                      .-|.++...++.+.|++.+.++|.+-|.++.+|.++++++.-+|+.++|+.++++|+++..+-.    .+....+.+++.
T Consensus        48 l~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl  127 (175)
T KOG4555|consen   48 LKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL  127 (175)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            3566777899999999999999999999999999999999999999999999999999975432    233444555555


Q ss_pred             HHHHHHH
Q psy793          395 MRHHLNL  401 (414)
Q Consensus       395 ~~~~~~~  401 (414)
                      .++....
T Consensus       128 ~g~dd~A  134 (175)
T KOG4555|consen  128 LGNDDAA  134 (175)
T ss_pred             hCchHHH
Confidence            5544443

>KOG1127|consensus

Probab=97.77  E-value=0.00012  Score=76.09  Aligned_cols=114  Identities=12%  Similarity=0.163  Sum_probs=103.0

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      +..+|-.|.+.+++..|+..++.|++.                +|.+..+|..+|.+|...|.|..|++.+++|..++|.
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~----------------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~  628 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRT----------------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL  628 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcC----------------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence            445899999999999999999999999                9999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +.-+-|..|.....+|+|.+|+..+...+..-......+..++.+..+..
T Consensus       629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~a  678 (1238)
T KOG1127|consen  629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDA  678 (1238)
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            99999999999999999999999999999877666666666666655443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.75  E-value=6.5e-05  Score=45.66  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      .+++.+|.+++++|+|++|+.+++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            578999999999999999999999999999975

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.74  E-value=0.00028  Score=66.98  Aligned_cols=120  Identities=10%  Similarity=0.151  Sum_probs=97.5

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCc--HHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS--KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI  334 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~--~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  334 (414)
                      +.++-+........|...|++++|..|+-.|..||++.........  .....+.......+-..+..||+++++.+.|+
T Consensus       169 ~PqiDkwl~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlAL  248 (569)
T PF15015_consen  169 LPQIDKWLQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLAL  248 (569)
T ss_pred             ChhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHH
Confidence            4455566777788899999999999999999999999865443221  22333334445567778999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       335 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      ...-+.|-++|.+...|++.|.|...+.+|.+|.+.+--|.-
T Consensus       249 nh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  249 NHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             HHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887766544

>KOG1130|consensus

Probab=97.73  E-value=0.00037  Score=66.11  Aligned_cols=121  Identities=16%  Similarity=0.134  Sum_probs=93.8

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      +++.+.||.+.=.|+|+.|+++|++++.+.-...          .........+.+|..|.-+++|++||.+..+-|.+.
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg----------~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG----------NRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc----------chhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999999999998843222          134445667889999999999999999999988774


Q ss_pred             ------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHH
Q psy793          345 ------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----PN-DQQILKEIAFVRKQM  395 (414)
Q Consensus       345 ------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-----P~-~~~~~~~l~~~~~~~  395 (414)
                            -....+++.+|.++..+|+.++|+...++.+++.     |. ...++.+|..+...+
T Consensus       306 qeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~l  368 (639)
T KOG1130|consen  306 QELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILEL  368 (639)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHh
Confidence                  2356899999999999999999999998888764     22 234555555544433

>KOG2796|consensus

Probab=97.72  E-value=0.00089  Score=60.03  Aligned_cols=118  Identities=15%  Similarity=0.239  Sum_probs=93.4

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .....|...++-|+.+.|..+++..-.-.          +....-.....++.|.+.+|+-.++|.+|...+++++..||
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~----------~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~  283 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVT----------QKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP  283 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHH----------hhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCC
Confidence            35667888888888888887777443221          11111244567889999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHH
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRK  393 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l~~~~~  393 (414)
                      .++.+-.++|.|++.+|+..+|++..+.+++..|..   .....+|..++.
T Consensus       284 ~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  284 RNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE  334 (366)
T ss_pred             CchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999974   444455554443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.00016  Score=67.75  Aligned_cols=102  Identities=16%  Similarity=0.131  Sum_probs=78.9

Q ss_pred             hhhHHhhhc--CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          270 SGNEYFKLN--RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       270 ~G~~~~~~~--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      .+...+..|  .+.+|...|++..+.                -+..+.++..+|.|++.+|+|++|...+.+|+..+|.+
T Consensus       171 ~awv~l~~g~e~~~~A~y~f~El~~~----------------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~  234 (290)
T PF04733_consen  171 EAWVNLATGGEKYQDAFYIFEELSDK----------------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPND  234 (290)
T ss_dssp             HHHHHHHHTTTCCCHHHHHHHHHHCC----------------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCH
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHhc----------------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCC
Confidence            333444444  578888888775432                23456778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCH-HHHHHHHHHHHhhCCCCHHHHHH
Q psy793          348 VKALFRRGRAQVSMNNF-EQGLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~-~~A~~~~~~al~l~P~~~~~~~~  387 (414)
                      +.++.+++.+...+|+. +.+.+.+.+....+|+++-+...
T Consensus       235 ~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~~~~~~  275 (290)
T PF04733_consen  235 PDTLANLIVCSLHLGKPTEAAERYLSQLKQSNPNHPLVKDL  275 (290)
T ss_dssp             HHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCChhHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999999998 66778888888899998765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.69  E-value=0.00025  Score=64.81  Aligned_cols=80  Identities=13%  Similarity=0.062  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHH
Q psy793          313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA---LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILK  386 (414)
Q Consensus       313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a---~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~  386 (414)
                      ....++..|.-+++.|+|++|+..+++++...|....+   .+.+|.+++.+++|++|+..|++.++++|+++   .+..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y  110 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY  110 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence            34557788999999999999999999999999988654   59999999999999999999999999999885   4555


Q ss_pred             HHHHHH
Q psy793          387 EIAFVR  392 (414)
Q Consensus       387 ~l~~~~  392 (414)
                      .++.+.
T Consensus       111 ~~g~~~  116 (243)
T PRK10866        111 MRGLTN  116 (243)
T ss_pred             HHHHhh
Confidence            555543

>KOG4642|consensus

Probab=97.67  E-value=7.9e-05  Score=65.64  Aligned_cols=82  Identities=17%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      -+.+++.-++|..|+..|.+||.++|..+..|-++|.||+.+.+|+.+..+.++|+++.|+...++.-++......+.+.
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~   95 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYD   95 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcccc
Confidence            45667778899999999999999999999999999999999999999999999999999999888888888877766655


Q ss_pred             HH
Q psy793          400 NL  401 (414)
Q Consensus       400 ~~  401 (414)
                      +.
T Consensus        96 ea   97 (284)
T KOG4642|consen   96 EA   97 (284)
T ss_pred             HH
Confidence            43

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.67  E-value=7.8e-05  Score=45.38  Aligned_cols=32  Identities=28%  Similarity=0.638  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  380 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  380 (414)
                      ++|+.+|.++..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            56778888888888888888888888888774

...

>KOG3785|consensus

Probab=97.65  E-value=0.00013  Score=67.83  Aligned_cols=111  Identities=12%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-------
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL-------  342 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~-------  342 (414)
                      .|.-+|..|+|++|+..|+-+..-                +.-...++.|+|.|++-+|.|.+|.....+|-+       
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~----------------~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RL  126 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNK----------------DDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRL  126 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcc----------------CCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHH
Confidence            677899999999999999887764                333456777788888888888777666554421       


Q ss_pred             -------cC------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          343 -------ME------------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       343 -------~~------------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                             ++            .+..+-...+|.+++..-.|++|+..|++.+.-+|+...+...++.|+.++.
T Consensus       127 lfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD  199 (557)
T KOG3785|consen  127 LFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD  199 (557)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc
Confidence                   11            0112233455666666667777777777777777777777777777665553

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.62  E-value=0.00019  Score=62.53  Aligned_cols=96  Identities=11%  Similarity=0.032  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      +.....+++.+|..|-.+|-+.-|..+++++|.+.|+-+.++..+|.-+..-|+|+.|.+.|...++++|.+..+..+.+
T Consensus        61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg  140 (297)
T COG4785          61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG  140 (297)
T ss_pred             hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc
Confidence            45667888999999999999999999999999999999999999999999999999999999999999999988888777


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEKMT  405 (414)
Q Consensus       390 ~~~~~~~~~~~~~k~~  405 (414)
                      ...---++..-.+...
T Consensus       141 i~~YY~gR~~LAq~d~  156 (297)
T COG4785         141 IALYYGGRYKLAQDDL  156 (297)
T ss_pred             eeeeecCchHhhHHHH
Confidence            6654444444444433

>KOG0495|consensus

Probab=97.61  E-value=0.00078  Score=67.41  Aligned_cols=130  Identities=15%  Similarity=0.119  Sum_probs=100.7

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHHHHHhh------HHHHHHHHHHHHHHHHHhhC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQKHF------RSYYTAALLNMAAVQLKFKA  329 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~~nla~~~~~l~~  329 (414)
                      +..-+..+++.|+..+|.....+|++..+.....           ...+....+      ..-...+|+.-+....-+++
T Consensus       587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~  666 (913)
T KOG0495|consen  587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN  666 (913)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence            4456677888899999999999998874321110           011111111      11123567777777778999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       330 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      .++|+..|+++|+.-|+..|.|+.+|+++..+++.+.|...|...++.-|+..-.+..|.++....+
T Consensus       667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999999999998888877665

>PRK10941 hypothetical protein; Provisional

Probab=97.60  E-value=0.00084  Score=61.93  Aligned_cols=81  Identities=16%  Similarity=0.165  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      ......+.|+=.+|++.++|+.|+.+++.++.++|+++.-+--+|.+|.++|.+..|..+++..++..|+++.+......
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            34556788999999999999999999999999999999988889999999999999999999999999999887655544


Q ss_pred             H
Q psy793          391 V  391 (414)
Q Consensus       391 ~  391 (414)
                      +
T Consensus       258 l  258 (269)
T PRK10941        258 I  258 (269)
T ss_pred             H
Confidence            4

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.58  E-value=0.00046  Score=56.67  Aligned_cols=80  Identities=16%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH---HHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ---ILKE  387 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~---~~~~  387 (414)
                      ...+++.|...++.|+|++|++.++.+....|-.   ..+.+.++.+|+..++|++|+..+++-++++|.++.   ++..
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            3457889999999999999999999999887754   578999999999999999999999999999999854   4444


Q ss_pred             HHHHHH
Q psy793          388 IAFVRK  393 (414)
Q Consensus       388 l~~~~~  393 (414)
                      .+.+.-
T Consensus        90 ~gL~~~   95 (142)
T PF13512_consen   90 RGLSYY   95 (142)
T ss_pred             HHHHHH
Confidence            444443

>KOG4151|consensus

Probab=97.58  E-value=0.00028  Score=72.13  Aligned_cols=124  Identities=19%  Similarity=0.285  Sum_probs=107.6

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH--hhCHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRAI  334 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~A~  334 (414)
                      .......+..++..||.+|.+++|..|...|..++.+++..            ......+..|.+.||+.  +++|..++
T Consensus        46 i~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~------------~~~~a~~~~~~~s~~m~~~l~~~~~~~  113 (748)
T KOG4151|consen   46 IEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKD------------HHVVATLRSNQASCYMQLGLGEYPKAI  113 (748)
T ss_pred             hHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheecccc------------chhhhhHHHHHHHHHhhcCccchhhhc
Confidence            66777788899999999999999999999999999996632            35667888999998887  56899999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       335 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      ..|+-|+...|.-.++++.++.+|..++.++-|++++.-.....|.+..+.....+++
T Consensus       114 ~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk  171 (748)
T KOG4151|consen  114 PECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELK  171 (748)
T ss_pred             CchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999999999989999999966655444443

>KOG0495|consensus

Probab=97.56  E-value=0.0014  Score=65.61  Aligned_cols=118  Identities=12%  Similarity=0.057  Sum_probs=100.1

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      ..++...-+++.++|+...++||+.                -|.+..+|+.+|+++.++++.+.|...|..-++..|+.+
T Consensus       656 Ks~~~er~ld~~eeA~rllEe~lk~----------------fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i  719 (913)
T KOG0495|consen  656 KSANLERYLDNVEEALRLLEEALKS----------------FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI  719 (913)
T ss_pred             HHhHHHHHhhhHHHHHHHHHHHHHh----------------CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc
Confidence            3444455566777777777777776                678889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      -.|..++..-...|..-.|...++++.-.||.+...+...-++..+.+.....+
T Consensus       720 pLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~  773 (913)
T KOG0495|consen  720 PLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAE  773 (913)
T ss_pred             hHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999999999999999988877766666666555443

>KOG3364|consensus

Probab=97.55  E-value=0.002  Score=51.94  Aligned_cols=85  Identities=15%  Similarity=0.303  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHhhC---HHHHHHHHHHHHh-cCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793          313 YTAALLNMAAVQLKFKA---YKRAINLCDDILL-MEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       313 ~~~~~~nla~~~~~l~~---~~~A~~~~~~al~-~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  387 (414)
                      .....+|+|+|+.+..+   .++.+..++..++ -.|. .-...|.+|..++++++|+.|+.+.+.+++.+|+|..+...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            34667899999988654   6778889999996 4443 34688999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHH
Q psy793          388 IAFVRKQMRH  397 (414)
Q Consensus       388 l~~~~~~~~~  397 (414)
                      -..+..++.+
T Consensus       111 k~~ied~itk  120 (149)
T KOG3364|consen  111 KETIEDKITK  120 (149)
T ss_pred             HHHHHHHHhh
Confidence            8777766554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.53  E-value=0.0045  Score=58.67  Aligned_cols=127  Identities=13%  Similarity=0.124  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      .+...+......|-.-+..|+|.+|.+...++-+.                .+.-..+|.--|.+-.++|+++.|-.+..
T Consensus        79 rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~----------------~e~p~l~~l~aA~AA~qrgd~~~an~yL~  142 (400)
T COG3071          79 RKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEH----------------GEQPVLAYLLAAEAAQQRGDEDRANRYLA  142 (400)
T ss_pred             HHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----------------CcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence            45567788888899999999999999999988776                56666778888889999999999999999


Q ss_pred             HHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          339 DILLMEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       339 ~al~~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      ++-+..++ +--....++..+...++++.|.....++++..|.++.+......++..+++..+.
T Consensus       143 eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~l  206 (400)
T COG3071         143 EAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQAL  206 (400)
T ss_pred             HHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHH
Confidence            99999544 4456789999999999999999999999999999999999999999988887764

>KOG4507|consensus

Probab=97.42  E-value=0.00043  Score=68.26  Aligned_cols=108  Identities=17%  Similarity=0.233  Sum_probs=94.3

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHH-HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYT-AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~-~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      .|.-+-..|+...|+++...|+..                .|... .-..|+|.++++-+....|-..+.++|.++...+
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~----------------~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep  676 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNL----------------APLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP  676 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhcc----------------ChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc
Confidence            344445678999999999999987                44333 3467999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      -.+|.+|.++..+.+.+.|++.|+.|++++|++..+...|..+..
T Consensus       677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            899999999999999999999999999999999999998887765

>KOG3785|consensus

Probab=97.41  E-value=0.0012  Score=61.65  Aligned_cols=102  Identities=9%  Similarity=0.107  Sum_probs=75.2

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      .+..+.+|..|+...+-.+..       ..        .....+-.-+|-|++.+|+|++|+..|+-+.+-+-.+++.+.
T Consensus        31 dfls~rDytGAislLefk~~~-------~~--------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~v   95 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNL-------DR--------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGV   95 (557)
T ss_pred             HHHhcccchhHHHHHHHhhcc-------ch--------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccch
Confidence            455668888888887777644       11        111233345789999999999999999999998777889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ++|.|++-+|.|.+|.....+|    |.++-..+.+-.+..
T Consensus        96 nLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlah  132 (557)
T KOG3785|consen   96 NLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAH  132 (557)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHH
Confidence            9999999999999998776665    444444444444433

>KOG2053|consensus

Probab=97.40  E-value=0.0027  Score=65.72  Aligned_cols=118  Identities=12%  Similarity=0.137  Sum_probs=100.9

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      .....++|.+|+....+.++-                .|...-+..--|..+.++|++++|..+++..-...+++...+-
T Consensus        18 d~ld~~qfkkal~~~~kllkk----------------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq   81 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKK----------------HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQ   81 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHH
Confidence            445668899999999998887                6666677777889999999999999766666666777888888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA  407 (414)
Q Consensus       353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~  407 (414)
                      .+-.||..++.+++|...|++++..+|+ .+....+-.++.+.+.+.+.++..++
T Consensus        82 ~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQkaa~~  135 (932)
T KOG2053|consen   82 FLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQKAALQ  135 (932)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999 88888889999999999888775543

>KOG1941|consensus

Probab=97.40  E-value=0.0013  Score=61.49  Aligned_cols=108  Identities=16%  Similarity=0.246  Sum_probs=85.5

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHH-HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS-YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      ....|+.....+.|+++++.|++|+++.....           ++ +...++..++..|-+++++++|+-+..+|+++..
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-----------D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~  193 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNND-----------DAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVN  193 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-----------CceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHH
Confidence            34488999999999999999999999965544           22 3346788999999999999999999999987742


Q ss_pred             C------C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHH
Q psy793          346 N------N----VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PNDQQIL  385 (414)
Q Consensus       346 ~------~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~~~~~~  385 (414)
                      .      +    .-++|+++.++..+|+.-+|.++.+.|.++.  -+|..++
T Consensus       194 s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~  245 (518)
T KOG1941|consen  194 SYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQ  245 (518)
T ss_pred             hcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHH
Confidence            2      1    3478899999999999999999999988764  3454443

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=97.37  E-value=0.0078  Score=53.74  Aligned_cols=104  Identities=12%  Similarity=0.179  Sum_probs=77.5

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH-------HHHHHHHHHHHh
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY-------KRAINLCDDILL  342 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~A~~~~~~al~  342 (414)
                      .+..+-....+++|++.|.-||-.......         .......+++.+|++|..+++.       ..|+..+.+|++
T Consensus        83 ~~~~~~~~Rt~~~ai~~YkLAll~~~~~~~---------~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~  153 (214)
T PF09986_consen   83 KPRDFSGERTLEEAIESYKLALLCAQIKKE---------KPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYE  153 (214)
T ss_pred             ccCCCCCCCCHHHHHHHHHHHHHHHHHhCC---------CHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            344666778999999999999987432221         1335678899999999999994       455555555554


Q ss_pred             cCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          343 MEP------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       343 ~~p------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      ...      +....+|-+|...+++|++++|+..|.+++...-...
T Consensus       154 ~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  154 NEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             hCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            432      2357889999999999999999999999998754433

>KOG4814|consensus

Probab=97.37  E-value=0.0027  Score=63.40  Aligned_cols=106  Identities=12%  Similarity=0.152  Sum_probs=91.3

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      -.-..+++.+...|+..+|..|++.|...+..++...          .+.....+..+++.||+++.+.++|.+++++|-
T Consensus       352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~----------~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE  421 (872)
T KOG4814|consen  352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDN----------YSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAE  421 (872)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchh----------hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999998854322          134457889999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      +.+|.++-.-+..-.+...-+.-++|+....+....
T Consensus       422 ~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  422 EVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             hhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            999999988888888888899999999988877654

>KOG3081|consensus

Probab=97.34  E-value=0.0039  Score=56.18  Aligned_cols=73  Identities=14%  Similarity=0.216  Sum_probs=64.4

Q ss_pred             hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       328 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      +++..|.-.|+..-+..|..+..+..+|.|++.+++|++|...++.||..++++++.+.++--+....+...+
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~  259 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAE  259 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChH
Confidence            4589999999999887788999999999999999999999999999999999999999988887766665533

>KOG1586|consensus

Probab=97.29  E-value=0.022  Score=50.50  Aligned_cols=126  Identities=17%  Similarity=0.193  Sum_probs=91.9

Q ss_pred             HHHHHHhhhHHhhh-cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          264 IRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       264 a~~~~~~G~~~~~~-~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      |+.+.+.|..|-.. .++++||.+|++|-+....          .+....-..++...|..--.+++|.+|+..|+++..
T Consensus       113 Ak~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~----------ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  113 AKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG----------EESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc----------hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566666655 7899999999999988432          112344557888888888899999999999999986


Q ss_pred             cCCCC------HHHHH-HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHH
Q psy793          343 MEPNN------VKALF-RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--ILKEIAFVRKQMRHHL  399 (414)
Q Consensus       343 ~~p~~------~~a~~-~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~~~~~  399 (414)
                      -.-+|      +|-|+ .-|.|++...|.-.|...+++..+++|.-..  --+.|..+...+.+..
T Consensus       183 ~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk~L~~aieE~d  248 (288)
T KOG1586|consen  183 SSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLKDLLDAIEEQD  248 (288)
T ss_pred             HhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHhhhh
Confidence            65444      45554 5688999989999999999999999997543  3345555555555443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.28  E-value=0.0011  Score=44.80  Aligned_cols=41  Identities=29%  Similarity=0.472  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  355 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g  355 (414)
                      .+++.+|.++.++|+|.+|..+++.+|+++|+|..|.--+.
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            46788999999999999999999999999999988755443

>KOG1941|consensus

Probab=97.27  E-value=0.0051  Score=57.71  Aligned_cols=138  Identities=15%  Similarity=0.272  Sum_probs=100.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC------------C---------------cHHHHHhhHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------------Q---------------SKTQQKHFRSYYTA  315 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~------------~---------------~~~~~~~~~~~~~~  315 (414)
                      ++......|..++...++++|+..+.+.|..++....-            .               +-....+.......
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567778889999999999999999888766422100            0               00011111234457


Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------H
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ------I  384 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~------~  384 (414)
                      +|.|++..+.++.+|.+++.+++..+.+....     ..++.-+|.++..++.++++++.|++|+++..++.+      +
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            89999999999999999999999999875333     367888999999999999999999999998655432      3


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy793          385 LKEIAFVRKQMRHHLN  400 (414)
Q Consensus       385 ~~~l~~~~~~~~~~~~  400 (414)
                      -..|+.+..++++..+
T Consensus       165 cv~Lgslf~~l~D~~K  180 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEK  180 (518)
T ss_pred             hhhHHHHHHHHHhhhH
Confidence            4455566666665554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.26  E-value=0.00015  Score=44.29  Aligned_cols=34  Identities=32%  Similarity=0.396  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH
Q psy793          286 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN  335 (414)
Q Consensus       286 ~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~  335 (414)
                      +|++||++                +|....+|+|+|.+|...|++++|++
T Consensus         1 ~y~kAie~----------------~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIEL----------------NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHH----------------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            48899999                99999999999999999999999863

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.012  Score=54.06  Aligned_cols=130  Identities=15%  Similarity=0.133  Sum_probs=99.6

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH-----
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD-----  339 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~-----  339 (414)
                      ......+..+...+++.+|...+..++..                .+....+...++.||+.+|+.+.|...+..     
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~----------------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQA----------------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHh----------------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            33566788899999999999999999998                666778888999999999998776554332     


Q ss_pred             -----------------------------HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCHHHHHHH
Q psy793          340 -----------------------------ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQILKEI  388 (414)
Q Consensus       340 -----------------------------al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P--~~~~~~~~l  388 (414)
                                                   .+.-+|++..+-+.+|..+...|++++|++.+-..++.+-  +|..+++.+
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence                                         2233799999999999999999999999999998888764  356777777


Q ss_pred             HHHHHHHH----HHHHHHHHHHHhhh
Q psy793          389 AFVRKQMR----HHLNLEKMTYARMF  410 (414)
Q Consensus       389 ~~~~~~~~----~~~~~~k~~~~~~f  410 (414)
                      -.+...++    ...+-.|++|+-+|
T Consensus       279 le~f~~~g~~Dp~~~~~RRkL~slLy  304 (304)
T COG3118         279 LELFEAFGPADPLVLAYRRKLYSLLY  304 (304)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHhhC
Confidence            77776666    22333455555443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.25  E-value=0.00048  Score=41.76  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      .+|+.+|.+|.++|++++|+.+++++++++|++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578999999999999999999999999999854

...

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.24  E-value=0.0029  Score=63.54  Aligned_cols=101  Identities=9%  Similarity=0.099  Sum_probs=81.7

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      --+...|..+..+|+.++|++.|++|+..-         .+   ..+...-+++.+++|++-+.+|++|..++.+.++.+
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q---------~~---~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s  335 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQ---------SE---WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES  335 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccch---------hh---HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence            346678999999999999999999999541         11   234456789999999999999999999999999976


Q ss_pred             CCCHHHH--HHHHHHHHHcCCH-------HHHHHHHHHHHhhC
Q psy793          345 PNNVKAL--FRRGRAQVSMNNF-------EQGLQDYEQALDLL  378 (414)
Q Consensus       345 p~~~~a~--~~~g~~~~~lg~~-------~~A~~~~~~al~l~  378 (414)
                      .. .+++  |..|.|+..+++.       ++|.+.|+++-.+-
T Consensus       336 ~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  336 KW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             cc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            54 4554  5668899999999       88888888876654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2376|consensus

Probab=97.22  E-value=0.004  Score=61.82  Aligned_cols=90  Identities=17%  Similarity=0.290  Sum_probs=72.7

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC---
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME---  344 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~---  344 (414)
                      ++++...|+.+..++|+.+++ .  +                ++....+..-+|..++++++|++|+..|+..++.+   
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~--~----------------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd  143 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-G--L----------------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDD  143 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-c--c----------------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCch
Confidence            577888888889899888887 1  2                33445567778999999999999999999886432   


Q ss_pred             ---------------------------CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          345 ---------------------------PN-NVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       345 ---------------------------p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                                                 |. ....+|+.|.++...|+|.+|++.+++|++
T Consensus       144 ~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~  203 (652)
T KOG2376|consen  144 QDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALR  203 (652)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence                                       22 456889999999999999999999999944

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.19  E-value=0.0038  Score=53.13  Aligned_cols=71  Identities=17%  Similarity=0.273  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      -|+.|.+.++.....+|.++.++++-|.++..+.+          +++|+.-|+.|+.++|+...+...++.++......
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence            37899999999999999999999999999988854          47788999999999999999999999998877764


Q ss_pred             H
Q psy793          399 L  399 (414)
Q Consensus       399 ~  399 (414)
                      .
T Consensus        86 ~   86 (186)
T PF06552_consen   86 T   86 (186)
T ss_dssp             -
T ss_pred             c
Confidence            3

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=97.14  E-value=0.00084  Score=40.25  Aligned_cols=31  Identities=16%  Similarity=0.561  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793          350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  380 (414)
Q Consensus       350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  380 (414)
                      |+|++|.++..+|++++|+..|+++++..|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            5677777777777777777777777777775

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.13  E-value=0.013  Score=51.01  Aligned_cols=108  Identities=25%  Similarity=0.436  Sum_probs=81.5

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC-CHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-NVKAL  351 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-~~~a~  351 (414)
                      .++..++++.|+..|.+++.. ...            .......+..++..+...++++.|+..+.+++...+. ...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~-~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  205 (291)
T COG0457         139 ALYELGDYEEALELYEKALEL-DPE------------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEAL  205 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc-CCC------------ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHH
Confidence            788889999999999998664 110            0134455556666678888899999999999988888 68888


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          352 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ..++.++...++++.|+..+.+++...|........+..+..
T Consensus       206 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (291)
T COG0457         206 LNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLL  247 (291)
T ss_pred             HHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHH
Confidence            888999998889999999999999988875444444444444

>KOG0551|consensus

Probab=97.09  E-value=0.0029  Score=58.59  Aligned_cols=83  Identities=22%  Similarity=0.200  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPN----NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~----~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      .-|-.-|.=|++-++|..|+..|++.|+..-.    ++-.|.+||.|.+.+|+|..|+.+..+|+.++|.+..+...-+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            34456677889999999999999999988543    35578899999999999999999999999999999888888888


Q ss_pred             HHHHHHH
Q psy793          391 VRKQMRH  397 (414)
Q Consensus       391 ~~~~~~~  397 (414)
                      |.-+++.
T Consensus       162 c~~eLe~  168 (390)
T KOG0551|consen  162 CLLELER  168 (390)
T ss_pred             HHHHHHH
Confidence            8877777

>KOG1585|consensus

Probab=97.05  E-value=0.062  Score=48.04  Aligned_cols=131  Identities=11%  Similarity=0.121  Sum_probs=91.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...++.|-..++|++|..+..+|++..+.+.          .--.-...|-..+....++..|.++..++++|..+
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnr----------slfhAAKayEqaamLake~~klsEvvdl~eKAs~l  100 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR----------SLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASEL  100 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc----------cHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            44455566666678899999999999998744333          11233567778888888999999999999999877


Q ss_pred             C-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 E-----PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ------QILKEIAFVRKQMRHHLNLEKM  404 (414)
Q Consensus       344 ~-----p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~------~~~~~l~~~~~~~~~~~~~~k~  404 (414)
                      .     |+-+-.-.-+|--.....+.++|+..|++++.+--++.      +....+++++.++++..+..+.
T Consensus       101 Y~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a  172 (308)
T KOG1585|consen  101 YVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATA  172 (308)
T ss_pred             HHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHH
Confidence            3     44444444444445566889999999999998754442      3344555666666666665543

>KOG2376|consensus

Probab=96.99  E-value=0.011  Score=58.93  Aligned_cols=119  Identities=11%  Similarity=0.096  Sum_probs=82.6

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCC-----------cHHHHHhhH------HHHHHHHHHHHHHHHHh
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ-----------SKTQQKHFR------SYYTAALLNMAAVQLKF  327 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~-----------~~~~~~~~~------~~~~~~~~nla~~~~~l  327 (414)
                      ..++..-|.+-+.++|++|+..-.+.|...+....+.           ..++...+.      .......+..|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            4566667777788888888887777776642111110           011111110      11112236889999999


Q ss_pred             hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       328 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      ++.++|+.+++   .+++.+.+.+.-+|+.++++++|++|++.|+..++-+-++.+...
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~  148 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEER  148 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHH
Confidence            99999999988   667777889999999999999999999999999887766554443

>KOG3824|consensus

Probab=96.96  E-value=0.0046  Score=56.73  Aligned_cols=75  Identities=24%  Similarity=0.290  Sum_probs=66.9

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      .+.|.-..+.|+.++|...++.||.++|+++.++..+|.....-++.-+|-.+|-+|+.++|.|.+++.+.++..
T Consensus       120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            344455567999999999999999999999999999999999999999999999999999999999887766554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.95  E-value=0.014  Score=57.32  Aligned_cols=59  Identities=19%  Similarity=0.152  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQA  374 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~a  374 (414)
                      +...+|.|..++|+.++|++.+...++..|.  +-..++++..++..++.|.++.+.+.+.
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3445556666666666666666666555443  3345556666666666666655555553

The molecular function of this protein is uncertain.

>KOG0376|consensus

Probab=96.95  E-value=0.001  Score=64.55  Aligned_cols=82  Identities=21%  Similarity=0.240  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      -+-|.-+++-+.|+.|+..|.+||+++|+++..+-.++.++...++|..|+.++.+|++++|....+....+.+...+.+
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~   87 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE   87 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence            45666778899999999999999999999999999999999999999999999999999999876554444444444443


Q ss_pred             HH
Q psy793          398 HL  399 (414)
Q Consensus       398 ~~  399 (414)
                      ..
T Consensus        88 ~~   89 (476)
T KOG0376|consen   88 FK   89 (476)
T ss_pred             HH
Confidence            33

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.93  E-value=0.05  Score=47.18  Aligned_cols=99  Identities=25%  Similarity=0.359  Sum_probs=49.3

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      ....+..+...+.+..++..+..++..              ...+.....+...+.++..++++..++..+..++...+.
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (291)
T COG0457          62 LLLLALALLKLGRLEEALELLEKALEL--------------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPD  127 (291)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhh--------------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCC
Confidence            344555555555555565555555541              002334444555555555555555555555555555444


Q ss_pred             CHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCC
Q psy793          347 NVKALFRRGR-AQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       347 ~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      +.......+. ++...++++.|...|++++..+|
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  161 (291)
T COG0457         128 PDLAEALLALGALYELGDYEEALELYEKALELDP  161 (291)
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            4333333333 45555555555555555555444

>KOG2471|consensus

Probab=96.93  E-value=0.0014  Score=63.46  Aligned_cols=119  Identities=9%  Similarity=0.074  Sum_probs=87.3

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHH--HHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA--ALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~--~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      .+..+.+.++..|+|..|.+.....=-.         .+..-...|....  .|.|+|.++++++.|.-+..++.+||+.
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~---------~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N  312 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVSNIH---------KEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRN  312 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhcccc---------cccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHH
Confidence            3455667777777777776654321100         0111111233333  4689999999999999999999999951


Q ss_pred             ---------C---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          344 ---------E---------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       344 ---------~---------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                               .         ......+|+.|..|.+.|+.-.|..+|.++.+....++.+|..+++|=.
T Consensus       313 ~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  313 SCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence                     1         1345789999999999999999999999999999999999999988743

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.92  E-value=0.028  Score=48.52  Aligned_cols=104  Identities=20%  Similarity=0.165  Sum_probs=80.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +......+..++..+++++|+...+.++..-.             .......+-.++|.+.+.++++++|+..++..-.-
T Consensus        89 ~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~-------------De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~  155 (207)
T COG2976          89 VLAALELAKAEVEANNLDKAEAQLKQALAQTK-------------DENLKALAALRLARVQLQQKKADAALKTLDTIKEE  155 (207)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHccch-------------hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccc
Confidence            44566788899999999999999999996511             03344567789999999999999998876654321


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      + -.+..--.+|.++..+|+-++|++.|+++++..++.
T Consensus       156 ~-w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         156 S-WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             c-HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            1 112234678999999999999999999999998443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.88  E-value=0.0018  Score=37.73  Aligned_cols=31  Identities=39%  Similarity=0.761  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793          350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  380 (414)
Q Consensus       350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  380 (414)
                      +++++|.++..++++++|+..|+++++++|+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            4556666666666666666666666665554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.82  E-value=0.0023  Score=39.45  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793          350 ALFRRGRAQVSMNNFEQGLQDYEQAL  375 (414)
Q Consensus       350 a~~~~g~~~~~lg~~~~A~~~~~~al  375 (414)
                      +|.++|.+|..+|+|++|+..|++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666666666666666666644

>KOG1308|consensus

Probab=96.79  E-value=0.00093  Score=62.10  Aligned_cols=78  Identities=12%  Similarity=0.210  Sum_probs=65.9

Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      -.|+++.|++.|..+|.++|..+..|-.++.++..++....|+++|..|++++|+...-......+.+.++...+..+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~  203 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH  203 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence            367799999999999999999999999999999999999999999999999999876655555555555555554433

>KOG1585|consensus

Probab=96.78  E-value=0.032  Score=49.82  Aligned_cols=115  Identities=10%  Similarity=0.091  Sum_probs=83.8

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc---
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM---  343 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~---  343 (414)
                      -..++-.....-+.++|+..|++++.++....+          ..+-...+-..+..+.++++|.+|-..+.+-..+   
T Consensus       113 aleKAak~lenv~Pd~AlqlYqralavve~~dr----------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~  182 (308)
T KOG1585|consen  113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDR----------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK  182 (308)
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch----------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence            344566677778899999999999988654432          3455678888899999999999997777665432   


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCHHHHHHHHHH
Q psy793          344 ---EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL----PNDQQILKEIAFV  391 (414)
Q Consensus       344 ---~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~----P~~~~~~~~l~~~  391 (414)
                         -+...+++...-.+|....+|..|.++|+.+.++.    |++.....+|-..
T Consensus       183 ~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~a  237 (308)
T KOG1585|consen  183 CDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTA  237 (308)
T ss_pred             HhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHH
Confidence               24556777777777888889999999999998874    4444444444333

>KOG0882|consensus

Probab=96.76  E-value=0.002  Score=61.65  Aligned_cols=145  Identities=19%  Similarity=0.177  Sum_probs=101.0

Q ss_pred             eEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCCccccc
Q psy793           26 RMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLK  105 (414)
Q Consensus        26 ~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (414)
                      -|.|+++.+-.|.-++-|..+|.          .+++++..|.||+..+++|.||........|- + .+|..       
T Consensus       113 ~IAVs~~~sg~i~VvD~~~d~~q----------~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-V-EyWs~-------  173 (558)
T KOG0882|consen  113 LIAVSLFKSGKIFVVDGFGDFCQ----------DGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-V-EYWSA-------  173 (558)
T ss_pred             eEEeecccCCCcEEECCcCCcCc----------cceecccccCceEEEEeeccccceeeccccce-e-EeecC-------
Confidence            89999999999999999999994          55599999999999999999986532221110 0 00000       


Q ss_pred             ccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCC--CcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCC
Q psy793          106 VISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED--ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDG  183 (414)
Q Consensus       106 ~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~--e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~  183 (414)
                                               .+     ...++.  ..+.++|+ .-++...... ....+-+|+++-..-+.|+.
T Consensus       174 -------------------------e~-----~~qfPr~~l~~~~K~e-TdLy~f~K~K-t~pts~Efsp~g~qistl~~  221 (558)
T KOG0882|consen  174 -------------------------EG-----PFQFPRTNLNFELKHE-TDLYGFPKAK-TEPTSFEFSPDGAQISTLNP  221 (558)
T ss_pred             -------------------------CC-----cccCcccccccccccc-chhhcccccc-cCccceEEccccCcccccCc
Confidence                                     00     011222  24456663 4444444433 23345678888888888999


Q ss_pred             cceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCC
Q psy793          184 KNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSG  221 (414)
Q Consensus       184 ~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g  221 (414)
                      +..|||++.++-++++.|..+.+ ....|..++.|.+..
T Consensus       222 DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~Ve  260 (558)
T KOG0882|consen  222 DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVE  260 (558)
T ss_pred             ccEEEEEEeccchhhhhhhccchhhhhccccccccceee
Confidence            99999999999999999999887 456677777776654

>KOG2610|consensus

Probab=96.73  E-value=0.028  Score=52.34  Aligned_cols=122  Identities=10%  Similarity=-0.032  Sum_probs=72.8

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc-
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM-  343 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~-  343 (414)
                      +.+...+..++.+|++.+|...+.+.|.-                -|.+.-++-..-.+++-+|+...-....++++.. 
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d----------------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w  167 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDD----------------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW  167 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHh----------------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc
Confidence            34555677888999999999999999976                3444434333444555556655555666666544 


Q ss_pred             CCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       344 ~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|+.+   ..+--.+-++...|-|++|.+..++++++||.|.-+...+..+.....+.++..
T Consensus       168 n~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~  229 (491)
T KOG2610|consen  168 NADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGK  229 (491)
T ss_pred             CCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHH
Confidence            44442   222233445556666666666666666666666666555555555444444433

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.72  E-value=0.0029  Score=37.81  Aligned_cols=33  Identities=24%  Similarity=0.392  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      .+++++|.|+.++|++++|+..+++++...|++
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            367899999999999999999999999999874

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.71  E-value=0.0027  Score=39.16  Aligned_cols=29  Identities=24%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      +|.++|.+|.++|+|++|+.+|+++|.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999977553

>KOG0545|consensus

Probab=96.67  E-value=0.013  Score=52.17  Aligned_cols=90  Identities=12%  Similarity=0.169  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhc--------CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLM--------EPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQAL  375 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~--------~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al  375 (414)
                      +.++...|.-++++|+|.+|...|..|+..        .|..          .-.+.+.++|+...++|-++++.....|
T Consensus       178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL  257 (329)
T KOG0545|consen  178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL  257 (329)
T ss_pred             hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence            456677888899999999999999999733        3433          3478899999999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          376 DLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       376 ~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ..+|.|..+....+++....=...+.+.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~  285 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKA  285 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHH
Confidence            9999999998888887765544444433

>KOG4340|consensus

Probab=96.66  E-value=0.025  Score=51.89  Aligned_cols=103  Identities=9%  Similarity=0.105  Sum_probs=80.7

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy793          274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  353 (414)
Q Consensus       274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  353 (414)
                      +.+..+|.+||++...-.+.                .|.....+.-+|.||....+|..|-.+|++.-.+.|...+..+.
T Consensus        20 lI~d~ry~DaI~~l~s~~Er----------------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY   83 (459)
T KOG4340|consen   20 LIRDARYADAIQLLGSELER----------------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLY   83 (459)
T ss_pred             HHHHhhHHHHHHHHHHHHhc----------------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHH
Confidence            46667778887777666655                56666788899999999999999999999999999999998889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          354 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       354 ~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      .|++++.-+.+.+|++......    +++..+...-.++..++
T Consensus        84 ~AQSLY~A~i~ADALrV~~~~~----D~~~L~~~~lqLqaAIk  122 (459)
T KOG4340|consen   84 QAQSLYKACIYADALRVAFLLL----DNPALHSRVLQLQAAIK  122 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHhc----CCHHHHHHHHHHHHHHh
Confidence            9999999999999988766543    23455555555554443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.60  E-value=0.054  Score=59.36  Aligned_cols=101  Identities=11%  Similarity=0.056  Sum_probs=70.3

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC-
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-  346 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-  346 (414)
                      ...|..+...|++++|...+.+++.......          .......++.++|.++...|++++|...+++++.+... 
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g----------~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~  564 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHD----------VYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQ  564 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc----------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh
Confidence            3455555666666666666666665533211          01223456788899999999999999999999876211 


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          347 -------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       347 -------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                             ....+..+|.++...|++++|...+++++.+.
T Consensus       565 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        565 HLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence                   22345677888999999999999999988764

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.59  E-value=0.016  Score=52.34  Aligned_cols=71  Identities=17%  Similarity=0.233  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                      +.-+++-|...+.-|+|.+|+..++.+....|.+   .++.+-++.++++.++|++|+...++-+.+.|+++.+
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~  107 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA  107 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence            4568889999999999999999999999887754   5799999999999999999999999999999987643

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.59  E-value=0.079  Score=44.08  Aligned_cols=86  Identities=19%  Similarity=0.230  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLMEPNN----------------------VKALFRRGRAQVSMNNFEQGLQDYEQAL  375 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~~~~~lg~~~~A~~~~~~al  375 (414)
                      ...|......++...++..+.+++.+-...                      ..++..++..+...|++++|+..+++++
T Consensus        10 ~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l   89 (146)
T PF03704_consen   10 VREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRAL   89 (146)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            344555566778899999999998773211                      3466677888999999999999999999


Q ss_pred             hhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          376 DLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       376 ~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .++|-+..++..+..++...++..+..+
T Consensus        90 ~~dP~~E~~~~~lm~~~~~~g~~~~A~~  117 (146)
T PF03704_consen   90 ALDPYDEEAYRLLMRALAAQGRRAEALR  117 (146)
T ss_dssp             HHSTT-HHHHHHHHHHHHHTT-HHHHHH
T ss_pred             hcCCCCHHHHHHHHHHHHHCcCHHHHHH
Confidence            9999999999999999998888766543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.57  E-value=0.0033  Score=55.33  Aligned_cols=61  Identities=23%  Similarity=0.360  Sum_probs=56.7

Q ss_pred             HHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       323 ~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      ...+.++.+.|.+.+.+||++.|.+...|+|+|....+.|+++.|.+.|++.++++|.|..
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccccc
Confidence            4556788999999999999999999999999999999999999999999999999998753

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.54  E-value=0.051  Score=47.06  Aligned_cols=102  Identities=14%  Similarity=0.248  Sum_probs=79.4

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .-..+.++|+.|++.|+++.|++.|.++......             ....+.+++++..+.+..++|..+..+..+|-.
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-------------~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-------------PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3466788999999999999999999998876221             356678889999999999999999999999976


Q ss_pred             cCCC--CH--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          343 MEPN--NV--K--ALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       343 ~~p~--~~--~--a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      +-..  +.  +  .....|..++..++|..|...|-.+..-
T Consensus       102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            6322  22  2  2334477788889999999888776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.54  E-value=0.017  Score=61.47  Aligned_cols=111  Identities=5%  Similarity=-0.123  Sum_probs=74.0

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhh-------------ccCCcHHHHHhhH-----HHHHHHHHHHHHHHHHhh
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY-------------NQSQSKTQQKHFR-----SYYTAALLNMAAVQLKFK  328 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~-------------~~~~~~~~~~~~~-----~~~~~~~~nla~~~~~l~  328 (414)
                      +...-+.+.+.|++++|...|+...+.....             ......+++.++-     ......|..+..++...|
T Consensus       429 ~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g  508 (697)
T PLN03081        429 FLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHK  508 (697)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Confidence            5556666677777777777776665421100             0001111111110     112345777778888888


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      +++.|...++++++++|++...|..++.+|...|++++|.+.++...+.
T Consensus       509 ~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        509 NLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             CcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            8888888888888888888888888888888999999998888877754

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.54  E-value=0.02  Score=43.48  Aligned_cols=68  Identities=12%  Similarity=0.141  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHH
Q psy793          333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~  400 (414)
                      .+..++++++.+|++..+.|.+|.++...|++++|++.+-.+++.+++.  ..++..+-.+...++....
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p   76 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP   76 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence            4567889999999999999999999999999999999999999998765  7788888888888777543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.54  E-value=0.074  Score=45.64  Aligned_cols=113  Identities=12%  Similarity=0.072  Sum_probs=87.6

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh-cCCCCHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL-MEPNNVKAL  351 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~-~~p~~~~a~  351 (414)
                      ..-++=+.+.++....+.++..                 ..+.-.+.+|.++..+|++.+|...|++++. +-.+++..+
T Consensus        65 a~~q~ldP~R~~Rea~~~~~~A-----------------pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~l  127 (251)
T COG4700          65 ALQQKLDPERHLREATEELAIA-----------------PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAML  127 (251)
T ss_pred             HHHHhcChhHHHHHHHHHHhhc-----------------hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHH
Confidence            3334445666666666666552                 2234567899999999999999999999995 467888999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHH
Q psy793          352 FRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +.++.+++..+++..|...+++..+.+|.-  +.....+++.+...++..+.+
T Consensus       128 LglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Ae  180 (251)
T COG4700         128 LGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAE  180 (251)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHH
Confidence            999999999999999999999999999864  556667777777777766544

>KOG4340|consensus

Probab=96.51  E-value=0.038  Score=50.73  Aligned_cols=120  Identities=17%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH----
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL----  341 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al----  341 (414)
                      .+...|.-|+...+|..|..+|.+.-.+                .|......+--|..+.+.+.|..|+.......    
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql----------------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~  109 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQL----------------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPA  109 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh----------------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHH
Confidence            4667899999999999999999888776                34444444444444444444444443322211    


Q ss_pred             --------------------------hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          342 --------------------------LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       342 --------------------------~~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                                                +.-|  +.+....+.|...++-|+|++|++-|+.|++...-++-...+++.+.-
T Consensus       110 L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy  189 (459)
T KOG4340|consen  110 LHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY  189 (459)
T ss_pred             HHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH
Confidence                                      1123  345566677777777788888888888888877777777777777766


Q ss_pred             HHHHHHHH
Q psy793          394 QMRHHLNL  401 (414)
Q Consensus       394 ~~~~~~~~  401 (414)
                      +.+++...
T Consensus       190 ~~~qyasA  197 (459)
T KOG4340|consen  190 SSRQYASA  197 (459)
T ss_pred             hhhhHHHH
Confidence            66655544

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.51  E-value=0.2  Score=46.73  Aligned_cols=122  Identities=10%  Similarity=0.045  Sum_probs=86.7

Q ss_pred             CHHHHHHHHHHHHHhhhHHhhhc-CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH
Q psy793          256 QLNQMEDVIRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI  334 (414)
Q Consensus       256 ~~~~~~~~a~~~~~~G~~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  334 (414)
                      ++....+.++.+++.|..+++++ +|+.|+...++|+++++....  ..............++..++.+|+..+.++...
T Consensus        27 ~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~--~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~  104 (278)
T PF08631_consen   27 DPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK--MDKLSPDGSELRLSILRLLANAYLEWDTYESVE  104 (278)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh--ccccCCcHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence            46777889999999999999999 999999999999999765210  111222234567889999999999988865443


Q ss_pred             H---HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          335 N---LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       335 ~---~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      +   ..+.+-...|+.+..++-.=.++...++.+++.+.+.+.+.--+
T Consensus       105 ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  105 KALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            3   33333344566666654444444447888888888888877543

It is also involved in sporulation [].

>smart00028 TPR Tetratricopeptide repeats

Probab=96.49  E-value=0.005  Score=35.70  Aligned_cols=33  Identities=33%  Similarity=0.586  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      .++.++|.++..++++++|+..++++++++|.+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            468899999999999999999999999998853

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=96.49  E-value=0.044  Score=50.00  Aligned_cols=82  Identities=18%  Similarity=0.260  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .........|+=..++..++|+.|+.+.++.+.++|.++.-+--+|.+|.++|.+.-|+.+++..++..|+++.+.....
T Consensus       177 ~~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~  256 (269)
T COG2912         177 REILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRA  256 (269)
T ss_pred             HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHH
Confidence            44556777888889999999999999999999999999999999999999999999999999999999999987665444


Q ss_pred             HH
Q psy793          390 FV  391 (414)
Q Consensus       390 ~~  391 (414)
                      .+
T Consensus       257 ~l  258 (269)
T COG2912         257 QL  258 (269)
T ss_pred             HH
Confidence            33

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.46  E-value=0.045  Score=52.14  Aligned_cols=117  Identities=16%  Similarity=0.131  Sum_probs=81.9

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ......+..+...|++++|.+.-..++...-              ++.   ++  +=.-.++.+++..=++..++.++..
T Consensus       264 ~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--------------D~~---L~--~~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         264 ELVVAYAERLIRLGDHDEAQEIIEDALKRQW--------------DPR---LC--RLIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--------------Chh---HH--HHHhhcCCCCchHHHHHHHHHHHhC
Confidence            3345567778888999999999998887511              222   11  1122346777788888888888888


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      |+++..++.+|..+++.+.|.+|...|+.|++..|+. +....++.+..++++..+.
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~-~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA-SDYAELADALDQLGEPEEA  380 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh-hhHHHHHHHHHHcCChHHH
Confidence            8888888888888888888888888888888887753 3445566666666655443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=96.42  E-value=0.083  Score=56.20  Aligned_cols=135  Identities=12%  Similarity=-0.006  Sum_probs=97.2

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHH------------HHhhccCCcHHHHHhhHHH---------HHHHHHHHHHHHH
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRY------------IKWYNQSQSKTQQKHFRSY---------YTAALLNMAAVQL  325 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~------------~~~~~~~~~~~~~~~~~~~---------~~~~~~nla~~~~  325 (414)
                      +......|.+.|++++|++.|++.++.            +....+....++...+-..         ....|..+..+|.
T Consensus       394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~  473 (697)
T PLN03081        394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG  473 (697)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence            556777888999999999999886642            1111111112222221111         1236777888999


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +.|++++|.+.+++. ...| +...|..+..++...|+++.|...+++++++.|++......+..++.+.++..+..+
T Consensus       474 r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        474 REGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             hcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence            999999999888764 2334 566788899999999999999999999999999998888888888888877766544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.42  E-value=0.064  Score=58.80  Aligned_cols=100  Identities=12%  Similarity=0.042  Sum_probs=79.8

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      ....|..++..|++++|...+.++++..+...           ......++..+|.++...|++++|...+.+++.....
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~  523 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTW-----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQ  523 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence            34467888899999999999999998532111           2223456788999999999999999999999976332


Q ss_pred             ------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          347 ------NVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       347 ------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                            ...++..+|.++...|++++|...+++++++
T Consensus       524 ~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        524 HDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             hcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                  1346778899999999999999999999986

>KOG2796|consensus

Probab=96.28  E-value=0.094  Score=47.43  Aligned_cols=124  Identities=12%  Similarity=0.170  Sum_probs=98.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH--
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL--  341 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al--  341 (414)
                      -.......+.+.-.+.|.-.+..|.+.++..               .+....+...++...++.|+.+.|..+++++-  
T Consensus       177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~---------------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~  241 (366)
T KOG2796|consen  177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY---------------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV  241 (366)
T ss_pred             HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC---------------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            3445567788888899999999999999861               25666778889999999999999999999554  


Q ss_pred             --hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          342 --LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       342 --~~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                        .++.  .+.-.+.+++.++...++|.+|...|.++++.+|.++.+.++.+.|+--+++....-
T Consensus       242 ~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAi  306 (366)
T KOG2796|consen  242 TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDAL  306 (366)
T ss_pred             HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHH
Confidence              3332  344567778888999999999999999999999999988888888776666655443

>KOG2396|consensus

Probab=96.28  E-value=0.18  Score=49.56  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN-FEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~-~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      +.++.+|.+...-..+-+.+.+--..|.++|..+|+++..|..-|.-.+..+. .+.|.+.|.++|+++|+++.++...-
T Consensus       102 ~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyf  181 (568)
T KOG2396|consen  102 NGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYF  181 (568)
T ss_pred             CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHH
Confidence            33667777776666666669999999999999999999999998888777766 99999999999999999999887766


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEKMT  405 (414)
Q Consensus       390 ~~~~~~~~~~~~~k~~  405 (414)
                      ++...--.....++..
T Consensus       182 rmEL~~~~Kl~~rr~~  197 (568)
T KOG2396|consen  182 RMELMYAEKLRNRREE  197 (568)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            6654444444444433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.25  E-value=0.077  Score=52.23  Aligned_cols=58  Identities=12%  Similarity=0.206  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLNLEKMT  405 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~~~k~~  405 (414)
                      ..+.+++|.|..++|+.++|++.++..++..|.  +..++.+|..++-.++++.+.++-.
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL  318 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL  318 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence            456688999999999999999999999998876  4678999999999998888887643

The molecular function of this protein is uncertain.

>KOG1586|consensus

Probab=96.23  E-value=0.23  Score=44.22  Aligned_cols=111  Identities=16%  Similarity=0.158  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ..+.++.+...||.|--.++|..|=..|.+|-++--...          ........|...+.||-+. +..+|+.++++
T Consensus        30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~----------skhDaat~YveA~~cykk~-~~~eAv~cL~~   98 (288)
T KOG1586|consen   30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG----------SKHDAATTYVEAANCYKKV-DPEEAVNCLEK   98 (288)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC----------CchhHHHHHHHHHHHhhcc-ChHHHHHHHHH
Confidence            344566666677777778899999999999888722111          1344566788888888766 99999999999


Q ss_pred             HHhcCCC------CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q psy793          340 ILLMEPN------NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       340 al~~~p~------~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~  381 (414)
                      ++++--+      -++-+..+|..|..- .++++|+..|++|-+...++
T Consensus        99 aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e  147 (288)
T KOG1586|consen   99 AIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE  147 (288)
T ss_pred             HHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch
Confidence            9988532      234556778888754 89999999999999887554

>PLN03077 Protein ECB2; Provisional

Probab=96.22  E-value=0.038  Score=60.26  Aligned_cols=135  Identities=11%  Similarity=0.024  Sum_probs=98.8

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHH------------HHhhccCCcHHHHHhh-H--------HHHHHHHHHHHHHHH
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRY------------IKWYNQSQSKTQQKHF-R--------SYYTAALLNMAAVQL  325 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~------------~~~~~~~~~~~~~~~~-~--------~~~~~~~~nla~~~~  325 (414)
                      +......|.+.|+.++|+..|++.++.            +....+....++...+ +        ......|..+..++.
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~  636 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG  636 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            556778889999999999999887652            1111111111111111 1        112357888999999


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +.|++++|.+.+++. .+.| ++..|-.+-.++..-++.+.|....+++++++|++......+..++...++..+..+
T Consensus       637 r~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~  712 (857)
T PLN03077        637 RAGKLTEAYNFINKM-PITP-DPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR  712 (857)
T ss_pred             hCCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence            999999999988874 3555 466777777788888999999999999999999999999999999988887766543

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.21  E-value=0.095  Score=57.87  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=26.6

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQAL  375 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al  375 (414)
                      |..+..+|.+.+++++|++.+++.++.. +.+...|..+..+|...|++++|...|++..
T Consensus       652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~  711 (1060)
T PLN03218        652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK  711 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            3344444444444444444444444332 2233444444445555555555555554443

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.19  E-value=0.042  Score=42.98  Aligned_cols=96  Identities=9%  Similarity=0.107  Sum_probs=68.7

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-----------CHHHHHHHHH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----------AYKRAINLCD  338 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----------~~~~A~~~~~  338 (414)
                      ++..+|++|++-+|++..+..+..-....             ....++.--|..+.++.           -...|++++.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~-------------~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s   68 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDE-------------SSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFS   68 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCC-------------chHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHH
Confidence            46789999999999999999887622111             11123333344443332           2567888999


Q ss_pred             HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          339 DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       339 ~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      ++..+.|..+..+|.+|.=+-....|+++..-.+++|.+.
T Consensus        69 ~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   69 RAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            9999999998888888888777788888888888887753

>PLN03218 maturation of RBCL 1; Provisional

Probab=96.15  E-value=0.11  Score=57.27  Aligned_cols=23  Identities=9%  Similarity=-0.045  Sum_probs=13.8

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAV  291 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al  291 (414)
                      ..-..|.+.|++++|+..|.+..
T Consensus       512 aLI~gy~k~G~~eeAl~lf~~M~  534 (1060)
T PLN03218        512 ALIDGCARAGQVAKAFGAYGIMR  534 (1060)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHH
Confidence            34445666667766666665544

>KOG1915|consensus

Probab=96.15  E-value=0.091  Score=51.28  Aligned_cols=108  Identities=12%  Similarity=0.185  Sum_probs=52.7

Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793          276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  355 (414)
Q Consensus       276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g  355 (414)
                      ...+.+.+...|+.+|.+++--.            -..+.+|+..|.-.+++.+...|.+.+..||.+.|.+ |.+-..-
T Consensus       378 e~ed~ertr~vyq~~l~lIPHkk------------FtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-KlFk~YI  444 (677)
T KOG1915|consen  378 EAEDVERTRQVYQACLDLIPHKK------------FTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-KLFKGYI  444 (677)
T ss_pred             HhhhHHHHHHHHHHHHhhcCccc------------chHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-hHHHHHH
Confidence            46788899999999999865322            2333444444444444444444444444444444421 1222222


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       356 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      ..-.++++++...+.|++-|+.+|.|-.++...+.+...++
T Consensus       445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lg  485 (677)
T KOG1915|consen  445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLG  485 (677)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence            22333444444444444444444444444444444443333

>KOG3824|consensus

Probab=96.12  E-value=0.037  Score=50.97  Aligned_cols=84  Identities=15%  Similarity=0.175  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      +....+ |....+.+....+.|+.++|...|..|+.+                .|..+.++..+|.....-++.-+|-.+
T Consensus       110 pa~~kE-A~~Al~~A~~~~~~Gk~ekA~~lfeHAlal----------------aP~~p~~L~e~G~f~E~~~~iv~ADq~  172 (472)
T KOG3824|consen  110 PAKVKE-AILALKAAGRSRKDGKLEKAMTLFEHALAL----------------APTNPQILIEMGQFREMHNEIVEADQC  172 (472)
T ss_pred             chhhHH-HHHHHHHHHHHHhccchHHHHHHHHHHHhc----------------CCCCHHHHHHHhHHHHhhhhhHhhhhh
Confidence            333433 444445566777889999999999999999                888999999999999889999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~  357 (414)
                      |.+||.++|.|.+|+-+++..
T Consensus       173 Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  173 YVKALTISPGNSEALVNRART  193 (472)
T ss_pred             hheeeeeCCCchHHHhhhhcc
Confidence            999999999999999998765

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.11  E-value=0.057  Score=50.52  Aligned_cols=116  Identities=15%  Similarity=0.143  Sum_probs=85.8

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHhcCCC
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~al~~~p~  346 (414)
                      ....+..-+.+..+.|...|.+|+..                ......+|...|..-.. .++.+.|...++.+++.-|.
T Consensus         5 i~~m~~~~r~~g~~~aR~vF~~a~~~----------------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~   68 (280)
T PF05843_consen    5 IQYMRFMRRTEGIEAARKVFKRARKD----------------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS   68 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCC----------------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHcC----------------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            34445555666688899999999743                33455778888888666 45666699999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHHHHHH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFVRKQMRHHL  399 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~~~~~~~~~  399 (414)
                      +...|.....-+..+++.+.|...|++++..-|.+.   .++..........++..
T Consensus        69 ~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~  124 (280)
T PF05843_consen   69 DPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLE  124 (280)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HH
T ss_pred             CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHH
Confidence            999999999999999999999999999999887765   56666666555555433

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.84  E-value=0.082  Score=38.54  Aligned_cols=69  Identities=17%  Similarity=0.255  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+....+.|..++.+.+..+|+..+++||+....             .+....++--++.+|...|+|++++.+.-.=+
T Consensus         4 ~~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~-------------~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~   70 (80)
T PF10579_consen    4 DQAKQQIEKGLKLYHQNETQQALQKWRKALEKITD-------------REDRFRVLGYLIQAHMEWGKYREMLAFALQQL   70 (80)
T ss_pred             HHHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC-------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777889999999999999999999999987432             34456677778889999999999998876555


Q ss_pred             hc
Q psy793          342 LM  343 (414)
Q Consensus       342 ~~  343 (414)
                      .+
T Consensus        71 ~~   72 (80)
T PF10579_consen   71 EI   72 (80)
T ss_pred             HH
Confidence            43

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>KOG1915|consensus

Probab=95.70  E-value=0.18  Score=49.22  Aligned_cols=93  Identities=16%  Similarity=0.205  Sum_probs=83.1

Q ss_pred             hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy793          275 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR  354 (414)
Q Consensus       275 ~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~  354 (414)
                      ..++++..|...|.+||..                +...+++|...+.+-++.+....|....++|+.+-|.-.+.||..
T Consensus        84 esq~e~~RARSv~ERALdv----------------d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY  147 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDV----------------DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY  147 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhc----------------ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence            3456677777777777776                778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          355 GRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       355 g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      -..-..+|+...|...|++=++..|+...
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w~P~eqa  176 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEWEPDEQA  176 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcCCCcHHH
Confidence            99999999999999999999999997543

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.42  E-value=0.91  Score=38.22  Aligned_cols=114  Identities=10%  Similarity=0.005  Sum_probs=87.2

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.+..+.+......+.++.+++...+...-.+                .|....+-.--|+.++..++|.+|+..++.+.
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL----------------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVL----------------RPEFPELDLFDGWLHIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            34667888888888888998887777554444                67788888889999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      .-.|..+.+---++.|++.++|.+-=. +-+.+++-.+ |+.+......+..
T Consensus        72 ~~~~~~p~~kALlA~CL~~~~D~~Wr~-~A~evle~~~-d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   72 ERAPGFPYAKALLALCLYALGDPSWRR-YADEVLESGA-DPDARALVRALLA  121 (160)
T ss_pred             ccCCCChHHHHHHHHHHHHcCChHHHH-HHHHHHhcCC-ChHHHHHHHHHHH
Confidence            999988877778899999999986533 2344555544 5666655555543

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.33  E-value=0.028  Score=49.67  Aligned_cols=61  Identities=13%  Similarity=0.232  Sum_probs=56.4

Q ss_pred             hHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          272 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       272 ~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      ....+.++.+.|.+.|.+|+.+                .|.+..-|+.++....+.|+++.|...+++.|+++|.+.
T Consensus         3 ~~~~~~~D~~aaaely~qal~l----------------ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALEL----------------APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhc----------------CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            3567789999999999999999                888999999999999999999999999999999999764

>PLN03077 Protein ECB2; Provisional

Probab=95.25  E-value=0.21  Score=54.50  Aligned_cols=84  Identities=10%  Similarity=0.039  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL----------------  377 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l----------------  377 (414)
                      ..+|..+-.++..-++.+.|....+++++++|+++..|..++.+|...|+|++|.+..+...+.                
T Consensus       657 ~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~  736 (857)
T PLN03077        657 PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK  736 (857)
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence            4456666666677889999999999999999999999999999999999999999998887653                


Q ss_pred             ----------CCCCHHHHHHHHHHHHHHHH
Q psy793          378 ----------LPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       378 ----------~P~~~~~~~~l~~~~~~~~~  397 (414)
                                .|...++...+..+..++++
T Consensus       737 ~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~  766 (857)
T PLN03077        737 VHAFLTDDESHPQIKEINTVLEGFYEKMKA  766 (857)
T ss_pred             EEEEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence                      24446677777766666653

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=95.24  E-value=0.025  Score=55.35  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=42.8

Q ss_pred             ccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhc
Q psy793          136 IYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY  203 (414)
Q Consensus       136 ~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~  203 (414)
                      ..|...+.|++.-+  .+|++++-+.| .  ..-..||-..+-| -.-.|+|+|+|+.||++++--..
T Consensus       242 L~g~~~p~En~~~R--~rGtVTVRn~G-~--G~G~VYIYredr~-ss~sHtvVG~V~~GiELid~a~~  303 (503)
T TIGR03268       242 LRGLDKPEENIEKR--RRGAVTVRNSG-V--GEGRVYIYREDRP-SSLSHNVVGHVTRGIELIDIAQE  303 (503)
T ss_pred             ccCccCCccccCcc--cceeEEEEeec-c--CceeEEEEcCCCC-CCcccceeEEEecceeeeecccC
Confidence            33566677766543  48999998877 2  2345777776544 12369999999999998865444

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.23  E-value=0.19  Score=46.45  Aligned_cols=73  Identities=15%  Similarity=0.233  Sum_probs=67.2

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          305 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       305 ~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      +...+......++..++..+...++++.++...++.+.++|-+..+|.++=.+|+..|+...|+..|++..++
T Consensus       144 ~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         144 QRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            3344467888999999999999999999999999999999999999999999999999999999999998874

>KOG2471|consensus

Probab=95.21  E-value=0.034  Score=54.24  Aligned_cols=95  Identities=13%  Similarity=0.040  Sum_probs=72.0

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHH-HhhccCCcHH-HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYI-KWYNQSQSKT-QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~-~~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+.|-..|+.+.|..++.+|.+||+-. .......+.. ...-.......+++|.|..|+..|+...|.+++.++...-
T Consensus       286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf  365 (696)
T KOG2471|consen  286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF  365 (696)
T ss_pred             ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence            4578999999999999999999999721 1111110100 0111122345789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHc
Q psy793          345 PNNVKALFRRGRAQVSM  361 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~l  361 (414)
                      -.|+..|.|+|.|+..-
T Consensus       366 h~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  366 HRNPRLWLRLAECCIMA  382 (696)
T ss_pred             hcCcHHHHHHHHHHHHH
Confidence            99999999999998753

>PRK00969 hypothetical protein; Provisional

Probab=95.21  E-value=0.025  Score=55.59  Aligned_cols=62  Identities=19%  Similarity=0.295  Sum_probs=43.0

Q ss_pred             ccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhc
Q psy793          136 IYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY  203 (414)
Q Consensus       136 ~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~  203 (414)
                      ..|...+.|++.-+  .+|+|++-+.| .  ..-..||-..+-| -.-.|+|+|+|+.|+++++--..
T Consensus       245 L~g~~~p~En~~~R--~~GtVTVRt~G-~--g~G~vYIyredr~-ss~sHtvVG~V~~GiELi~~a~~  306 (508)
T PRK00969        245 LQGLKIPEENFEPR--RRGTVTVRTAG-V--GVGKVYIYREDRP-SSLSHTVVGRVTHGIELIDFAKE  306 (508)
T ss_pred             ccCccCCccccCcc--ccceEEEEeec-c--CceeEEEECCCCC-CCccceeEEEEecceeeeecccC
Confidence            34566777766543  48999998877 3  2345777776644 12369999999999998865444

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.21  E-value=0.15  Score=55.07  Aligned_cols=123  Identities=7%  Similarity=0.045  Sum_probs=90.9

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-------CHHHHHHHHHH
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-------AYKRAINLCDD  339 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-------~~~~A~~~~~~  339 (414)
                      +....+.++..+.|++|+..|++.-.-.+-..             .--++.+..|.+.+..-       .+.+|+.-+++
T Consensus       478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  544 (932)
T PRK13184        478 CLAVPDAFLAEKLYDQALIFYRRIRESFPGRK-------------EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSY  544 (932)
T ss_pred             cccCcHHHHhhHHHHHHHHHHHHHhhcCCCcc-------------cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            34456778888999999999988876643222             22345556666655432       46666666665


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ... .|.-+--|..+|.+|..+++|++-+++|..|++..|+.+.+-.....+-.++.+..-+.+
T Consensus       545 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  607 (932)
T PRK13184        545 LHG-GVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHR  607 (932)
T ss_pred             hcC-CCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHH
Confidence            543 355677789999999999999999999999999999999998888888877777655443

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=95.15  E-value=0.25  Score=35.89  Aligned_cols=64  Identities=16%  Similarity=0.122  Sum_probs=42.4

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ  324 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  324 (414)
                      .+.|..+..++..+=+.|++.+|+.+|++|++++-......+.......-...+.=|.+++..+
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~L   66 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVL   66 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHH
Confidence            3457788899999999999999999999999987554433332222222233334444444443

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.10  E-value=0.37  Score=46.26  Aligned_cols=115  Identities=15%  Similarity=0.143  Sum_probs=82.3

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHH-HHHhhccCCc-----------------HHHHHhhHHHHHHHHHHHHHHHHHh
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVR-YIKWYNQSQS-----------------KTQQKHFRSYYTAALLNMAAVQLKF  327 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~-~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~nla~~~~~l  327 (414)
                      ...+.+..+.++|+..+|+......+. .+........                 .............++.-+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            345566777777788888888888887 3332211000                 0012222455667888888887778


Q ss_pred             ------hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH-----------------HHHHHHHHHHHhhCCC
Q psy793          328 ------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF-----------------EQGLQDYEQALDLLPN  380 (414)
Q Consensus       328 ------~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~-----------------~~A~~~~~~al~l~P~  380 (414)
                            +..++++..|.+|++++|.+.++|+..|..+..+=+.                 ..|+..|-+|+.+.+.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                  8899999999999999999999999999887765222                 3488888899988877

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.99  E-value=0.048  Score=34.24  Aligned_cols=29  Identities=28%  Similarity=0.358  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      .++.|+|.+|..+|+|++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45566667777777777777666666654

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.96  E-value=0.33  Score=48.95  Aligned_cols=89  Identities=8%  Similarity=-0.010  Sum_probs=67.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  385 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  385 (414)
                      -|...-.++..|..+...|+.++|++.+++++......    .-+++-+|.++..+.+|++|..+|.+.++.+.-.+...
T Consensus       263 yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y  342 (468)
T PF10300_consen  263 YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFY  342 (468)
T ss_pred             CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHH
Confidence            46666778899999999999999999999999544332    34788999999999999999999999999775544433


Q ss_pred             -HHHHHHHHHHHHH
Q psy793          386 -KEIAFVRKQMRHH  398 (414)
Q Consensus       386 -~~l~~~~~~~~~~  398 (414)
                       +..+.|+..+.+.
T Consensus       343 ~Y~~a~c~~~l~~~  356 (468)
T PF10300_consen  343 AYLAAACLLMLGRE  356 (468)
T ss_pred             HHHHHHHHHhhccc
Confidence             3334444444433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG3081|consensus

Probab=94.93  E-value=0.27  Score=44.60  Aligned_cols=74  Identities=14%  Similarity=0.090  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCCCHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ-DYEQALDLLPNDQQI  384 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~-~~~~al~l~P~~~~~  384 (414)
                      +....+....|.|++.+++|++|...++.||.-+++++..+-++-.+-..+|.-.++.. .+.+....+|+.+-+
T Consensus       204 ~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  204 PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            34456788899999999999999999999999999999999999999999998877665 445555566766543

>KOG1070|consensus

Probab=94.82  E-value=0.35  Score=53.20  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      ...+|...+..+++..+-++|...+.+||+.-|.  ..+..-..|+.-++.|+-+.+...|+-.+.-+|.-.+.|..+..
T Consensus      1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHH
Confidence            4567888888888888888888888888888777  56677777888888888888888888888888887777766554


Q ss_pred             HHH
Q psy793          391 VRK  393 (414)
Q Consensus       391 ~~~  393 (414)
                      ...
T Consensus      1643 ~ei 1645 (1710)
T KOG1070|consen 1643 MEI 1645 (1710)
T ss_pred             HHH
Confidence            433

>KOG4507|consensus

Probab=94.79  E-value=0.089  Score=52.56  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=98.4

Q ss_pred             HHhhhHHh-hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          268 KNSGNEYF-KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       268 ~~~G~~~~-~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      ...+..|. .+|+..+|+.||..|+-..+.              ...-.+++.+|.++.++|.-.+|--.+..|+.-.|.
T Consensus       216 H~~as~YWR~~G~~~~A~~Ca~~a~hf~~~--------------h~kdi~lLSlaTiL~RaG~sadA~iILhAA~~dA~~  281 (886)
T KOG4507|consen  216 HNMASFYWRIKGEPYQAVECAMRALHFSSR--------------HNKDIALLSLATVLHRAGFSADAAVILHAALDDADF  281 (886)
T ss_pred             HHHHHHHHHHcCChhhhhHHHHHHhhhCCc--------------ccccchhhhHHHHHHHcccccchhheeehhccCCcc
Confidence            34444444 478999999999999988442              223356788999999999999998888888888777


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI---LKEIAFVRKQMRHHLNLEKMTYARMF  410 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~---~~~l~~~~~~~~~~~~~~k~~~~~~f  410 (414)
                      -...+|-++.++..+++|-.....|..+.+..|.-...   ....-.|+.++.+..+|+++..+.|.
T Consensus       282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~~  348 (886)
T KOG4507|consen  282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRTL  348 (886)
T ss_pred             ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77789999999999999999999999999999875332   23344455666666666665555543

>PRK10941 hypothetical protein; Provisional

Probab=94.72  E-value=0.21  Score=46.21  Aligned_cols=78  Identities=8%  Similarity=0.051  Sum_probs=68.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      .+.+.+.=..+.+.++|+.|+.+-+..+.+                .|..+.-+..+|.+|.+++.+..|+.+++.-++.
T Consensus       181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l----------------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        181 RKLLDTLKAALMEEKQMELALRASEALLQF----------------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            555667778899999999999999999999                7777788889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRA  357 (414)
Q Consensus       344 ~p~~~~a~~~~g~~  357 (414)
                      .|+.+.+-.-+.+.
T Consensus       245 ~P~dp~a~~ik~ql  258 (269)
T PRK10941        245 CPEDPISEMIRAQI  258 (269)
T ss_pred             CCCchhHHHHHHHH
Confidence            99998876555443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.70  E-value=0.52  Score=39.65  Aligned_cols=89  Identities=12%  Similarity=0.124  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      .-+..+..+..+-++.++.+++...+.-.--+.|..+..-..-|..+...|+|.+|+..|+.+.+-.|..+.+...++.|
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C   87 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC   87 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence            34566778888888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy793          392 RKQMRHHLN  400 (414)
Q Consensus       392 ~~~~~~~~~  400 (414)
                      +..+++...
T Consensus        88 L~~~~D~~W   96 (160)
T PF09613_consen   88 LYALGDPSW   96 (160)
T ss_pred             HHHcCChHH
Confidence            877766544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=94.67  E-value=0.86  Score=42.60  Aligned_cols=104  Identities=12%  Similarity=0.084  Sum_probs=77.6

Q ss_pred             HHHhhhHHhh-hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          267 IKNSGNEYFK-LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       267 ~~~~G~~~~~-~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      +...|..-+. .++.+.|...|+.++..                -+....+|......+.++++.+.|...+++++..-+
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~----------------f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~  101 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKK----------------FPSDPDFWLEYLDFLIKLNDINNARALFERAISSLP  101 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHH----------------HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC
Confidence            4445555455 56777799999999998                555667777777888999999999999999998866


Q ss_pred             CCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          346 NNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       346 ~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      ...   ..|-+...--...|+.+...+..+++.++.|++..+..
T Consensus       102 ~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  102 KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            544   35666666677779999999999999999988655443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.027  Score=53.08  Aligned_cols=61  Identities=21%  Similarity=0.325  Sum_probs=41.1

Q ss_pred             cCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhc
Q psy793          137 YGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY  203 (414)
Q Consensus       137 ~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~  203 (414)
                      .+..++.|+++++.  +|.+++-|.| -++  -..||--.+-|. .-.|.|.|+|++||++++-...
T Consensus       245 q~~~~~~en~d~Re--rG~iTvRn~G-vge--GrvYIyRedR~s-s~sHnvVGrV~eGiELid~a~e  305 (512)
T COG4070         245 QEEKVPEENFDLRE--RGAITVRNVG-VGE--GRVYIYREDRPS-SLSHNVVGRVIEGIELIDLAEE  305 (512)
T ss_pred             ccccCChhhhhhhh--cceEEEEeee-ccc--ceEEEEecCCCC-ccccceeeeeecceEEEEeccc
Confidence            35566777777654  8999998876 333  356666654331 1368999999999988765443

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=94.58  E-value=0.36  Score=38.25  Aligned_cols=72  Identities=14%  Similarity=0.111  Sum_probs=56.4

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +--+...+...|+|++++..-.+||.+++......     +....+++.+-+++|.++..+|..++|+..++.+-++
T Consensus        58 hA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-----qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   58 HAGLSGALAGLGRYDECLQSADRALRYFNRRGELH-----QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-----STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-----cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            44466778889999999999999999988766332     2234577889999999999999999999999998765

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.54  E-value=0.2  Score=38.28  Aligned_cols=65  Identities=23%  Similarity=0.334  Sum_probs=45.4

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ...+.++|..|++.+.+..+..........       ......+..++|.++...|++++|+..+++|+++-
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~-------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS-------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh-------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            345679999999999999988433221000       12344567778888888888888888888888764

>KOG4814|consensus

Probab=94.54  E-value=0.88  Score=46.24  Aligned_cols=77  Identities=13%  Similarity=0.080  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  388 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  388 (414)
                      .++.|-|.-++++++|..+++.|...+..-|.+      +|..-.++.||..+.+.+.|.+.++.|-+.+|.++-.+..+
T Consensus       355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~  434 (872)
T KOG4814|consen  355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLM  434 (872)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            577899999999999999999999999776544      67888899999999999999999999999999987655554


Q ss_pred             HHH
Q psy793          389 AFV  391 (414)
Q Consensus       389 ~~~  391 (414)
                      ..+
T Consensus       435 ~~~  437 (872)
T KOG4814|consen  435 LQS  437 (872)
T ss_pred             HHH
Confidence            433

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.52  E-value=0.38  Score=47.12  Aligned_cols=122  Identities=9%  Similarity=0.159  Sum_probs=68.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC-------HHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-------YKRAINL  336 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-------~~~A~~~  336 (414)
                      .....+.|..++..|+|.+|+..|+.+|..+.-...... ++..+.......+.-.+-.+.+.+.+       .++....
T Consensus       204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~-~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~  282 (422)
T PF06957_consen  204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESR-EEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRN  282 (422)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSC-HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHH
Confidence            444666899999999999999999999998776654333 33333333333332222222222221       1222222


Q ss_pred             HHHH-----HhcCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          337 CDDI-----LLMEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       337 ~~~a-----l~~~p~~~~a~~~~g~~-~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      ++-|     .++.|.+-..-+|.|.. .++.++|.-|....++.|++.|..+.+.+
T Consensus       283 lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~a~q  338 (422)
T PF06957_consen  283 LELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEVAEQ  338 (422)
T ss_dssp             HHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHH
Confidence            2222     23445444444555554 45779999999999999999998765443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.42  E-value=0.097  Score=32.78  Aligned_cols=31  Identities=26%  Similarity=0.319  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      +.++.++|.+|..+|++++|+..+++++++.
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~   32 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEIR   32 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence            3578899999999999999999999998763

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.31  E-value=0.28  Score=45.04  Aligned_cols=72  Identities=15%  Similarity=0.193  Sum_probs=62.5

Q ss_pred             HHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          305 QQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       305 ~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      +...+...+..++...|..|++.+.+.+|++.+++++.++|=+...+.-+-..+..+||--.|++.|++.-+
T Consensus       270 ererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         270 ERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            344446677788888899999999999999999999999999999999999999999998888888877543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.23  E-value=0.74  Score=44.16  Aligned_cols=128  Identities=13%  Similarity=0.071  Sum_probs=98.3

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.+..+...+..+.+.|.++.|.....++........            .....+.+..|..+...|+-.+|+..++..+
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~------------~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~  211 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSE------------SLLPRVFLEYAKLLWAQGEQEEAIQKLRELL  211 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCccc------------CCCcchHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567788899999999999999999988887521111            1144566677778888888888988888777


Q ss_pred             hc--CC--------------------------------CCHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCC
Q psy793          342 LM--EP--------------------------------NNVKALFRRGRAQVSM------NNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       342 ~~--~p--------------------------------~~~~a~~~~g~~~~~l------g~~~~A~~~~~~al~l~P~~  381 (414)
                      ..  ..                                ..+++++.+|.-...+      +..++++..|+.|.+++|+.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  291 (352)
T PF02259_consen  212 KCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSW  291 (352)
T ss_pred             HHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhH
Confidence            61  10                                1146788888888888      89999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy793          382 QQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       382 ~~~~~~l~~~~~~~~~~~~~  401 (414)
                      ..++..++.....+-+....
T Consensus       292 ~k~~~~~a~~~~~~~~~~~~  311 (352)
T PF02259_consen  292 EKAWHSWALFNDKLLESDPR  311 (352)
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            99999988888877666553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=94.13  E-value=0.57  Score=33.44  Aligned_cols=37  Identities=19%  Similarity=0.169  Sum_probs=31.7

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      +.+..+...|..+=+.|+|++|+.+|.+|++.+....
T Consensus         3 ~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~   39 (69)
T PF04212_consen    3 DKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQAL   39 (69)
T ss_dssp             HHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence            4567788889999999999999999999999876544

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.02  E-value=0.57  Score=35.77  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=46.5

Q ss_pred             HHHHhhCHHHHHHHHHHHHhcCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          323 VQLKFKAYKRAINLCDDILLMEPN---------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       323 ~~~~l~~~~~A~~~~~~al~~~p~---------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      -.++.++|.+|++.+.+.+.....         ...++.++|.++...|++++|+..++.|+++..
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            346789999998888888755321         246788999999999999999999999999853

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.96  E-value=0.11  Score=32.34  Aligned_cols=29  Identities=34%  Similarity=0.580  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      ..|.++|.+-...++|+.|+.+|++|+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46778888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG2300|consensus

Probab=93.80  E-value=2.6  Score=41.68  Aligned_cols=99  Identities=16%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +....-.|.-...-+.|+.|..+|..|++..+.             .....-+-.|+|..|+..++-+.-.+..+   .+
T Consensus       367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~-------------~dl~a~~nlnlAi~YL~~~~~ed~y~~ld---~i  430 (629)
T KOG2300|consen  367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTES-------------IDLQAFCNLNLAISYLRIGDAEDLYKALD---LI  430 (629)
T ss_pred             HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH-------------HHHHHHHHHhHHHHHHHhccHHHHHHHHH---hc
Confidence            444556787788889999999999999988432             34567788999999999776544322222   33


Q ss_pred             CCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          344 EPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       344 ~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      .|.|          ..++|-.|.-.+.++++.+|...+++.++..
T Consensus       431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            4443          3578889999999999999999999999987

>KOG3617|consensus

Probab=93.73  E-value=1.2  Score=46.57  Aligned_cols=64  Identities=17%  Similarity=0.154  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHH----------HhcCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDI----------LLMEPNN----------VKALFRRGRAQVSMNNFEQGLQDYEQ  373 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~a----------l~~~p~~----------~~a~~~~g~~~~~lg~~~~A~~~~~~  373 (414)
                      -..|+|.|.-+..-++.+.|+++|+++          |.-+|..          .+.|-..|+-+...|+.+.|+..|..
T Consensus       858 r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~  937 (1416)
T KOG3617|consen  858 RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSS  937 (1416)
T ss_pred             hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHH
Confidence            356888888888899999999999886          2334433          44555668888999999999999999


Q ss_pred             HHhh
Q psy793          374 ALDL  377 (414)
Q Consensus       374 al~l  377 (414)
                      |...
T Consensus       938 A~D~  941 (1416)
T KOG3617|consen  938 AKDY  941 (1416)
T ss_pred             hhhh
Confidence            8763

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=93.71  E-value=0.72  Score=33.82  Aligned_cols=62  Identities=10%  Similarity=0.083  Sum_probs=41.4

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV  323 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~  323 (414)
                      ..+..+..+|..+=+.|+|++|+.+|.+||+.+-........+.....-...+.-|.++|..
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~   65 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEA   65 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34667888899999999999999999999999765443333333333333334445555443

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.68  E-value=3.1  Score=38.77  Aligned_cols=106  Identities=14%  Similarity=0.145  Sum_probs=75.7

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhc----CC---
Q psy793          274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLM----EP---  345 (414)
Q Consensus       274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~----~p---  345 (414)
                      ..++|+++.|..+|.|+-.+.+...        ..........++|.|...++.+ +++.|+..+++|+++    .+   
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~--------~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~   74 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLD--------PDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDK   74 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCC--------cHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccc
Confidence            4678999999999999998753111        1113455788999999999999 999999999999877    21   


Q ss_pred             CC-------HHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhCCCCHHHHHH
Q psy793          346 NN-------VKALFRRGRAQVSMNNFEQ---GLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       346 ~~-------~~a~~~~g~~~~~lg~~~~---A~~~~~~al~l~P~~~~~~~~  387 (414)
                      ..       ...+..++.+|...+.++.   |...++.+-.-.|+.+.....
T Consensus        75 ~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L  126 (278)
T PF08631_consen   75 LSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLL  126 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            11       3466778999998887654   444444444455776666633

It is also involved in sporulation [].

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.62  E-value=3.4  Score=35.97  Aligned_cols=135  Identities=13%  Similarity=0.198  Sum_probs=86.2

Q ss_pred             hhhHHhhhcCHH---HHHHHHHHHHHHHHhhccCCcHHHHHhhHHH------HHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          270 SGNEYFKLNRMH---DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY------YTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       270 ~G~~~~~~~~~~---~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      .|-.|+...+.+   +|-..|.+++..+..-.. ........+...      -.-.-+.+|..+...+++++|+..++.+
T Consensus        37 fGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~  115 (207)
T COG2976          37 FGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQA  115 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            466777666555   788899999988753332 222222222222      2234567788899999999999999999


Q ss_pred             HhcCCCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy793          341 LLMEPNN-V--KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLNLEKMTYAR  408 (414)
Q Consensus       341 l~~~p~~-~--~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~  408 (414)
                      +....+. -  -+-.|+|.++..++.+++|++.+.....  ++.. ......+.++..+++..+. |+.|++
T Consensus       116 l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~~~~elrGDill~kg~k~~A-r~ay~k  184 (207)
T COG2976         116 LAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWAAIVAELRGDILLAKGDKQEA-RAAYEK  184 (207)
T ss_pred             HccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHHHHHHHhhhHHHHcCchHHH-HHHHHH
Confidence            9765443 2  3567999999999999999988875422  1112 2234445555555554443 334443

>KOG2610|consensus

Probab=93.54  E-value=0.43  Score=44.78  Aligned_cols=64  Identities=13%  Similarity=-0.004  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ  373 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  373 (414)
                      .|.++-+.--.|.++...|-|++|.+..++++++++.+..+...++-++...+++.++.+...+
T Consensus       171 lp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  171 LPCYSYVHGMYAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK  234 (491)
T ss_pred             CcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence            4566667777889999999999999999999999999988888888888888887777766554

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=93.49  E-value=0.83  Score=34.63  Aligned_cols=56  Identities=13%  Similarity=-0.020  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--VKALFRRGRAQVSMNNFE  365 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~lg~~~  365 (414)
                      +|.+..+.+.+|.+++..|++++|++.+-.+++.++++  ..+.-.+-.++..+|.-+
T Consensus        18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen   18 NPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            88899999999999999999999999999999999876  344444444454455433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.47  E-value=6.6  Score=38.63  Aligned_cols=71  Identities=15%  Similarity=0.234  Sum_probs=56.0

Q ss_pred             HHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----HHHHHHHHHHHH
Q psy793          319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----QQILKEIAFVRK  393 (414)
Q Consensus       319 nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~----~~~~~~l~~~~~  393 (414)
                      .=|..++..|+|.+|..++.=..+++| ++.+|--+|.|++...+|++|..++.+   +.|++    ..+++.+..|+.
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqK  541 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQK  541 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHH
Confidence            345567789999999999999999999 999999999999999999999988774   45543    234444444443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG3364|consensus

Probab=93.46  E-value=0.56  Score=38.11  Aligned_cols=42  Identities=29%  Similarity=0.411  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR  353 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~  353 (414)
                      ..-.+.+.+|..+.++++|+.++.+++..|+.+|+|..|.--
T Consensus        69 ~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   69 RRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             cchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            344677889999999999999999999999999999877543

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=93.45  E-value=0.27  Score=30.16  Aligned_cols=33  Identities=9%  Similarity=0.118  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q psy793          349 KALFRRGRAQVSMNNFEQGLQD--YEQALDLLPND  381 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~--~~~al~l~P~~  381 (414)
                      +.++.+|-.+..+|++++|+..  |+-+..++|.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4567777777778888888887  44777776654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.19  E-value=3.5  Score=39.70  Aligned_cols=97  Identities=10%  Similarity=0.016  Sum_probs=75.4

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      .++...+...+-.|+|+.|.+.|+.-+.-                -....--+..|-.--.++|.++.|+.+.+++-...
T Consensus       121 LIhlLeAQaal~eG~~~~Ar~kfeAMl~d----------------PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A  184 (531)
T COG3898         121 LIHLLEAQAALLEGDYEDARKKFEAMLDD----------------PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA  184 (531)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHHHhcC----------------hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc
Confidence            34555677778889999999999877753                12222223333344457899999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      |.-++++...-......|+|+.|++..+...+.
T Consensus       185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~  217 (531)
T COG3898         185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAA  217 (531)
T ss_pred             cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            999999988888899999999999998876654

>KOG2053|consensus

Probab=93.14  E-value=0.81  Score=48.20  Aligned_cols=114  Identities=13%  Similarity=0.128  Sum_probs=82.8

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      -.|-.+++.|.+++|..+. +++...               .+.+...+.-+-.||..++++++|...|++++..+|. .
T Consensus        48 LkaLsl~r~gk~~ea~~~L-e~~~~~---------------~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-e  110 (932)
T KOG2053|consen   48 LKALSLFRLGKGDEALKLL-EALYGL---------------KGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-E  110 (932)
T ss_pred             HHHHHHHHhcCchhHHHHH-hhhccC---------------CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-H
Confidence            3677888889988888443 333221               2224445666778999999999999999999999998 8


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-HHHHHHHHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ-ILKEIAFVRKQMRHHL  399 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~-~~~~l~~~~~~~~~~~  399 (414)
                      +.++.+=.||.+-+.|.+-.+.--+..+.-|.++. .|..+..+.+.+...+
T Consensus       111 ell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~  162 (932)
T KOG2053|consen  111 ELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSEN  162 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCc
Confidence            89999999999999997766655556667788764 4555555555444433

>KOG1310|consensus

Probab=92.83  E-value=0.53  Score=46.72  Aligned_cols=77  Identities=21%  Similarity=0.157  Sum_probs=68.9

Q ss_pred             HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l---g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +....+..|+..|.++++..|.....|.++|.++++.   |+--.|+.+...|++++|....++..|.+++..+.+..+.
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~ea  464 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEA  464 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHh
Confidence            3355678899999999999999999999999998876   6778899999999999999999999999999999988775

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=92.78  E-value=1.2  Score=43.27  Aligned_cols=107  Identities=21%  Similarity=0.187  Sum_probs=79.7

Q ss_pred             cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc--------------
Q psy793          278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM--------------  343 (414)
Q Consensus       278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~--------------  343 (414)
                      ..|.++...|..++...+...    ........|..+..+..++.++..+|++..|.+.+++||-.              
T Consensus         8 ~~Y~~~q~~F~~~v~~~Dp~~----l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~   83 (360)
T PF04910_consen    8 KAYQEAQEQFYAAVQSHDPNA----LINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS   83 (360)
T ss_pred             HHHHHHHHHHHHHHHccCHHH----HHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            456777777777776521111    12222346788999999999999999999999999999721              


Q ss_pred             C------------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHH
Q psy793          344 E------------PNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEI  388 (414)
Q Consensus       344 ~------------p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l  388 (414)
                      +            +.|   -.++++....+.+.|.+.-|++..+-.+.++|. |+-....+
T Consensus        84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~  144 (360)
T PF04910_consen   84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLF  144 (360)
T ss_pred             ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHH
Confidence            1            112   358889999999999999999999999999999 76544333

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=92.74  E-value=3.1  Score=38.88  Aligned_cols=107  Identities=17%  Similarity=0.165  Sum_probs=79.2

Q ss_pred             HHHHHhhhHHhh----hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHH-HHHHHHHHHHHHHh-----h--CHHH
Q psy793          265 RTIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKF-----K--AYKR  332 (414)
Q Consensus       265 ~~~~~~G~~~~~----~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l-----~--~~~~  332 (414)
                      ..+.+.|..++.    ..++.+|...|.+|...                .... ..+.++++.+|..-     -  +...
T Consensus       110 ~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~----------------g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~  173 (292)
T COG0790         110 EALFNLGLMYANGRGVPLDLVKALKYYEKAAKL----------------GNVEAALAMYRLGLAYLSGLQALAVAYDDKK  173 (292)
T ss_pred             HHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc----------------CChhHHHHHHHHHHHHHcChhhhcccHHHHh
Confidence            345667777766    55999999999999987                1111 34466777777664     1  2347


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          333 AINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      |+..+.++....  ++.+.+++|.+|..    ..++++|...|++|.+...  ..+...+..+
T Consensus       174 A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~~~  232 (292)
T COG0790         174 ALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLGLM  232 (292)
T ss_pred             HHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHHHH
Confidence            999999988876  88899999988864    3589999999999999886  6666666633

>KOG1070|consensus

Probab=92.63  E-value=2.9  Score=46.50  Aligned_cols=82  Identities=16%  Similarity=0.099  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVR  392 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~  392 (414)
                      .+|..|+-.|.+-+++++|.+.++.-++--....+.|...|..++..++-++|...+++||+.-|.  +.+.....+.+.
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            567778888888999999999999888777677889999999999999999999999999999998  444555555544


Q ss_pred             HHHH
Q psy793          393 KQMR  396 (414)
Q Consensus       393 ~~~~  396 (414)
                      -+.+
T Consensus      1611 Fk~G 1614 (1710)
T KOG1070|consen 1611 FKYG 1614 (1710)
T ss_pred             hhcC
Confidence            4333

>TIGR03268 methan_mark_3 putative methanogenesis marker protein 3

Probab=92.49  E-value=0.49  Score=46.67  Aligned_cols=22  Identities=27%  Similarity=0.493  Sum_probs=20.3

Q ss_pred             eEEEEEcCCcchhhHHHHHHhh
Q psy793           26 RMVIELFKHIVPKTAENFRALC   47 (414)
Q Consensus        26 ~i~ieL~~~~aP~~~~nF~~l~   47 (414)
                      -|.|+||.|.||+|+.-|+++.
T Consensus       376 vi~IeLydd~AP~s~~yFRk~t  397 (503)
T TIGR03268       376 VIEIELYDDNAPRSVWYFRKFT  397 (503)
T ss_pred             EEEEEEcccCCchHHHHHHHhc
Confidence            4899999999999999999876

A single member of this protein family is found in each of the first ten complete genome sequences of archaeal methanogens, and nowhere else. This protein family was detected by the method of partial phylogenetic profiling (see Haft, et al., 2006). The functions of proteins in this family are unknown, but their role is likely one essential to methanogenesis.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=92.36  E-value=0.28  Score=45.48  Aligned_cols=81  Identities=19%  Similarity=0.125  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFR-RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~-~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      +.++.+|...+..-.+.+.|.+.-..|.++|+.+|.|+..|.. -+--+...++++.|.+.|.++++++|.++.+|...-
T Consensus       104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf  183 (435)
T COG5191         104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF  183 (435)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence            4567788888888888889999999999999999999998876 444577789999999999999999999998876554


Q ss_pred             HH
Q psy793          390 FV  391 (414)
Q Consensus       390 ~~  391 (414)
                      +.
T Consensus       184 r~  185 (435)
T COG5191         184 RM  185 (435)
T ss_pred             HH
Confidence            43

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=92.30  E-value=1.5  Score=35.01  Aligned_cols=116  Identities=13%  Similarity=0.118  Sum_probs=73.9

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH----Hh
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI----LL  342 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a----l~  342 (414)
                      +...|+..++.+++-.|+-+|++|+.+.+..... .+.+..++-...+...-|+|.-+..+|+-+=.++|++-|    +.
T Consensus         4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~-~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDES-NEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccc-ccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            5678999999999999999999999997655321 122333333455666789999999999999998887655    55


Q ss_pred             cCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~-~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      +-|..++.-   ..+ .-.+|--..|+-+|   ++..| |+.+.+.+..
T Consensus        83 LiPQCp~~~---C~afi~sLGCCk~ALl~F---~KRHP-NP~iA~~vq~  124 (140)
T PF10952_consen   83 LIPQCPNTE---CEAFIDSLGCCKKALLDF---MKRHP-NPEIARLVQH  124 (140)
T ss_pred             hccCCCCcc---hHHHHHhhhccHHHHHHH---HHhCC-CHHHHHHHHh
Confidence            556543211   111 11234444455444   34555 4555555543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=92.27  E-value=2.7  Score=32.99  Aligned_cols=85  Identities=13%  Similarity=0.121  Sum_probs=64.1

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHH
Q psy793          320 MAAVQLKFKAYKRAINLCDDILLMEPNNVK---ALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQIL  385 (414)
Q Consensus       320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~---a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~  385 (414)
                      +|.-+++.|++-+|++..+..+...+++..   .+...|.+++.+..           .-.|+.+|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            567789999999999999999999877663   45556777766643           3578999999999999987777


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy793          386 KEIAFVRKQMRHHLNLEKM  404 (414)
Q Consensus       386 ~~l~~~~~~~~~~~~~~k~  404 (414)
                      ..++.-......+++.-++
T Consensus        82 ~~la~~l~s~~~Ykk~v~k  100 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKK  100 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHH
Confidence            7776665555555554443

>KOG2047|consensus

Probab=92.02  E-value=8.2  Score=39.66  Aligned_cols=124  Identities=15%  Similarity=0.174  Sum_probs=87.8

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +....+...+...-.-|-++.....|.+.|++                .-..+.+-.|.|..+.....|++|.+.|++-+
T Consensus       475 rSlkiWs~y~DleEs~gtfestk~vYdriidL----------------riaTPqii~NyAmfLEeh~yfeesFk~YErgI  538 (835)
T KOG2047|consen  475 RSLKIWSMYADLEESLGTFESTKAVYDRIIDL----------------RIATPQIIINYAMFLEEHKYFEESFKAYERGI  538 (835)
T ss_pred             HhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCC
Confidence            33444445555555667888888889998888                44455667888999888999999999999999


Q ss_pred             hcCCC-CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          342 LMEPN-NV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       342 ~~~p~-~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .+-+. +.    ..|+-.....+.--..+.|...|++||+..|  +..-+.+-.++.++.+.....|
T Consensus       539 ~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar  603 (835)
T KOG2047|consen  539 SLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLAR  603 (835)
T ss_pred             ccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHH
Confidence            88542 22    2456667777777889999999999999988  4444444444454444443333

>KOG0686|consensus

Probab=91.86  E-value=1.2  Score=42.89  Aligned_cols=112  Identities=16%  Similarity=0.246  Sum_probs=83.6

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+.+.|..|..-|++..|+++|.++=.+...             ...-+..+.|+-.+-..+++|..-..+..+|.+.-
T Consensus       151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-------------~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~  217 (466)
T KOG0686|consen  151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTS-------------AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTP  217 (466)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-------------hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCc
Confidence            34666899999999999999999996665322             23446778888889999999999999888887662


Q ss_pred             --------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--------hCCCCHHHHHHHH
Q psy793          345 --------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD--------LLPNDQQILKEIA  389 (414)
Q Consensus       345 --------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~--------l~P~~~~~~~~l~  389 (414)
                              .-.++....-|.+...+++|..|.+.|-.+.-        +.|.|..+.-.+.
T Consensus       218 ~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLc  278 (466)
T KOG0686|consen  218 DANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLC  278 (466)
T ss_pred             hhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhH
Confidence                    11346777888899999999999998876643        2355655554443

>PRK00969 hypothetical protein; Provisional

Probab=91.81  E-value=0.51  Score=46.65  Aligned_cols=22  Identities=32%  Similarity=0.513  Sum_probs=20.4

Q ss_pred             eEEEEEcCCcchhhHHHHHHhh
Q psy793           26 RMVIELFKHIVPKTAENFRALC   47 (414)
Q Consensus        26 ~i~ieL~~~~aP~~~~nF~~l~   47 (414)
                      -|.|+||.+.||+|+.-|+++.
T Consensus       379 vi~IeLydd~AP~s~~yFR~~t  400 (508)
T PRK00969        379 LIEIELYDDKAPRTVWYFRKVT  400 (508)
T ss_pred             EEEEEEcCcCCchHHHHHHHhc
Confidence            4899999999999999999876

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=91.76  E-value=8.9  Score=40.13  Aligned_cols=110  Identities=15%  Similarity=0.105  Sum_probs=85.1

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc-c--C---Cc----HHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN-Q--S---QS----KTQQKHFRSYYTAALLNMAAVQLKFKAYKR  332 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~-~--~---~~----~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  332 (414)
                      .+..+.-.|..++..+..+.|.+++.++++.++... .  .   .+    .+...-.......++..++.+.+-+++|..
T Consensus       300 ~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~  379 (608)
T PF10345_consen  300 YALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSK  379 (608)
T ss_pred             HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHH
Confidence            355666678888888988899999999999987655 1  1   11    222333345566778888999999999999


Q ss_pred             HHHHHHHHHhcC---C------CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy793          333 AINLCDDILLME---P------NNVKALFRRGRAQVSMNNFEQGLQDYE  372 (414)
Q Consensus       333 A~~~~~~al~~~---p------~~~~a~~~~g~~~~~lg~~~~A~~~~~  372 (414)
                      |....+.+....   |      ..+..+|-.|..+...|+.+.|+..|.
T Consensus       380 a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  380 ATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            999888777553   2      247789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.71  E-value=7.3  Score=37.14  Aligned_cols=82  Identities=15%  Similarity=0.138  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhC------------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          310 RSYYTAALLNMAAVQLKFKA------------YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~------------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      +|.++.+|..+....-++-.            .+.-+..+++||+.+|++.+.+..+=.+...+.+-++..+-+++++..
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~   94 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK   94 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            66777777777665544422            456678899999999999999998888888999999999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy793          378 LPNDQQILKEIAFV  391 (414)
Q Consensus       378 ~P~~~~~~~~l~~~  391 (414)
                      +|++..++..+-..
T Consensus        95 ~~~~~~LW~~yL~~  108 (321)
T PF08424_consen   95 NPGSPELWREYLDF  108 (321)
T ss_pred             CCCChHHHHHHHHH
Confidence            99998887655444

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.54  E-value=0.29  Score=30.47  Aligned_cols=30  Identities=13%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      .+|..+|.+.+..++|++|+.+++++|++.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            468889999999999999999999999874

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=91.42  E-value=2.5  Score=40.98  Aligned_cols=56  Identities=11%  Similarity=0.071  Sum_probs=51.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          352 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYA  407 (414)
Q Consensus       352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~  407 (414)
                      -.+..||..+++.+.|+..-.+.+-++|....-+...+.+.+.+.++.+..|..+-
T Consensus       232 tklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~LeRy~eAarSami  287 (569)
T PF15015_consen  232 TKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLERYSEAARSAMI  287 (569)
T ss_pred             HHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999998876653

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=91.41  E-value=2.1  Score=41.49  Aligned_cols=82  Identities=13%  Similarity=0.192  Sum_probs=56.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-C------------c-HHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-Q------------S-KTQQKHFRSYYTAALLNMAAVQLKFKA  329 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-~------------~-~~~~~~~~~~~~~~~~nla~~~~~l~~  329 (414)
                      +..+...+..+..+|+++.|.+..++||=.++..-+. .            . .-...+ +.....+.+.....+.+-|.
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~e-NR~fflal~r~i~~L~~RG~  118 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPE-NRQFFLALFRYIQSLGRRGC  118 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCcccc-chHHHHHHHHHHHHHHhcCc
Confidence            4557778888888888888888888888665422210 0            0 001111 22233566667788889999


Q ss_pred             HHHHHHHHHHHHhcCCC
Q psy793          330 YKRAINLCDDILLMEPN  346 (414)
Q Consensus       330 ~~~A~~~~~~al~~~p~  346 (414)
                      |+.|++.|+-.+.+||.
T Consensus       119 ~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999998

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=91.33  E-value=0.8  Score=42.39  Aligned_cols=62  Identities=8%  Similarity=-0.021  Sum_probs=53.8

Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      |..+|.+|+.+.|.+...|..+|..+...++.-.|+-.|-+++-..-..+.+..+|..+..+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999998765568889999888877

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.32  E-value=2.7  Score=30.69  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW  296 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~  296 (414)
                      .+.|..+...|..+=+.|+|++|+.+|..|++++-.
T Consensus         3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            345777888999999999999999999999998643

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>KOG1550|consensus

Probab=91.30  E-value=2.1  Score=44.26  Aligned_cols=102  Identities=16%  Similarity=0.118  Sum_probs=78.1

Q ss_pred             HhhhHHhhhc-----CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHH
Q psy793          269 NSGNEYFKLN-----RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDI  340 (414)
Q Consensus       269 ~~G~~~~~~~-----~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~a  340 (414)
                      ..|..|.+..     ++..|+..|.+|-+.                  ....+.+++|.||..-.   ++..|.+++..|
T Consensus       293 ~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~------------------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~A  354 (552)
T KOG1550|consen  293 GLGRLYLQGLGVEKIDYEKALKLYTKAAEL------------------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLA  354 (552)
T ss_pred             HHHHHHhcCCCCccccHHHHHHHHHHHHhc------------------CCchHHHHHHHHHHcCCccccHHHHHHHHHHH
Confidence            4677777632     778899999998866                  34567788889888766   678999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          341 LLMEPNNVKALFRRGRAQVSM----NNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~~l----g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      ...  .+..|.|++|.||..=    .+.+.|..+|+++.+.+  ++.+...+..+.
T Consensus       355 a~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~  406 (552)
T KOG1550|consen  355 AKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFY  406 (552)
T ss_pred             HHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHH
Confidence            876  4788999999998742    57899999999999998  444444444443

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.28  E-value=2.1  Score=31.10  Aligned_cols=38  Identities=16%  Similarity=0.105  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      .+.+..+..+|...=..|+|++|+.+|.+|++.+-...
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~   40 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            34577788889999999999999999999999875444

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.23  E-value=2.9  Score=34.74  Aligned_cols=81  Identities=12%  Similarity=0.096  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +..+..+-+...+.+++...++..--+.|+.+.....-|..+...|+|++|+..|+...+-.+..+.....++.|+..++
T Consensus        13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            33444444445555555555555555556555555555556666666666666666555555555555555555555444


Q ss_pred             H
Q psy793          397 H  397 (414)
Q Consensus       397 ~  397 (414)
                      +
T Consensus        93 D   93 (153)
T TIGR02561        93 D   93 (153)
T ss_pred             C
Confidence            3

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.81  E-value=3.2  Score=30.06  Aligned_cols=37  Identities=14%  Similarity=0.108  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      +.+..+...|...=..|+|++|+.+|..|++.+-...
T Consensus         4 ~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~   40 (75)
T cd02656           4 QQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            4566677788888889999999999999999876544

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.79  E-value=3  Score=30.39  Aligned_cols=61  Identities=15%  Similarity=0.033  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA  322 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~  322 (414)
                      ..+-.+..+|...=+.|+|++|+.+|..+|+.+-.....+..+.....-...+.-|+.+|.
T Consensus         4 ~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE   64 (75)
T cd02677           4 EQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAE   64 (75)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHH
Confidence            4566777888888899999999999999999976655443333333333333444444443

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.71  E-value=2  Score=31.33  Aligned_cols=37  Identities=11%  Similarity=-0.050  Sum_probs=31.2

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      +.+..+..+|...=..|+|++|+.+|..||+.+-...
T Consensus         4 ~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~   40 (75)
T cd02684           4 EKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPAL   40 (75)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence            4566778888999999999999999999999876544

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=90.70  E-value=4.6  Score=39.17  Aligned_cols=43  Identities=19%  Similarity=0.193  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      .+.+-.++.+..-.+++++|+..+++++++.|..-.....+..
T Consensus       305 YWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~n  347 (374)
T PF13281_consen  305 YWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLEN  347 (374)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHH
Confidence            3444556777888899999999999999999887554444333

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.61  E-value=0.39  Score=26.94  Aligned_cols=24  Identities=13%  Similarity=0.124  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHH
Q psy793          349 KALFRRGRAQVSMNNFEQGLQDYE  372 (414)
Q Consensus       349 ~a~~~~g~~~~~lg~~~~A~~~~~  372 (414)
                      .+++.+|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            355666666777777776666554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=90.54  E-value=3.3  Score=30.15  Aligned_cols=38  Identities=16%  Similarity=0.100  Sum_probs=31.7

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      ...|..+...|..+=..|++++|+.+|.+|++.+-...
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~   42 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGI   42 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence            34567788888888899999999999999999876544

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.49  E-value=1  Score=29.00  Aligned_cols=25  Identities=20%  Similarity=0.363  Sum_probs=18.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          352 FRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       352 ~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      +.+|.+|..+|+++.|...++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5677777778888888777777774

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=90.48  E-value=5.6  Score=38.39  Aligned_cols=105  Identities=15%  Similarity=0.009  Sum_probs=72.5

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      ..+..|+|+.|++..+......-        .+....+.....++.-.+...+ ..+...|..+..+++++.|+..-+-.
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~v--------ie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~pdlvPaav  267 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKV--------IEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLAPDLVPAAV  267 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHh--------hchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCccchHHH
Confidence            45677888888888766655411        0011112222333333333332 34588899999999999999999988


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793          353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  387 (414)
                      --+.+++..|+..++-..++.+-+..|+ +.+...
T Consensus       268 ~AAralf~d~~~rKg~~ilE~aWK~ePH-P~ia~l  301 (531)
T COG3898         268 VAARALFRDGNLRKGSKILETAWKAEPH-PDIALL  301 (531)
T ss_pred             HHHHHHHhccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence            8999999999999999999999999885 444333

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=90.28  E-value=4.1  Score=41.25  Aligned_cols=106  Identities=18%  Similarity=0.094  Sum_probs=79.1

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH-HHHHHHHhcCCCCH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI-NLCDDILLMEPNNV  348 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~-~~~~~al~~~p~~~  348 (414)
                      ....+...++...|......++..                ++....++.|++.+....+..-.++ ..+..+....|++.
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~----------------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~  136 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSV----------------NPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA  136 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhc----------------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH
Confidence            344445555666666666666666                7888889999999988877655554 45555888999988


Q ss_pred             HHHHHH------HHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          349 KALFRR------GRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       349 ~a~~~~------g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      .....+      +.....+++..++....+++.++.|.++.+...+.-.
T Consensus       137 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~  185 (620)
T COG3914         137 EFLGHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRVLGALMTA  185 (620)
T ss_pred             HHHhhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence            766665      8888888999999999999999999987766655544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.28  E-value=2.6  Score=39.11  Aligned_cols=83  Identities=14%  Similarity=0.091  Sum_probs=64.0

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH--------------------------
Q psy793          320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ--------------------------  373 (414)
Q Consensus       320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~--------------------------  373 (414)
                      -+.-....+++.+|...+..++...|.+..+...++.||...|+.+.|...+..                          
T Consensus       140 ~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         140 EAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             HhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            344556789999999999999999999999999999999999999777665543                          


Q ss_pred             --------HHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          374 --------ALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       374 --------al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                              .+..+|+|.++...++..+...++.++.-
T Consensus       220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Al  256 (304)
T COG3118         220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAAL  256 (304)
T ss_pred             CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence                    11245777777777777766666665543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.16  E-value=8.1  Score=32.14  Aligned_cols=87  Identities=11%  Similarity=-0.017  Sum_probs=67.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+.+.........+.+++..... |++.+               .|....+-.--++.++..++|.+|+..++.+.+-
T Consensus        10 v~gLi~~~~~aL~~~d~~D~e~lLd-ALrvL---------------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        10 LGGLIEVLMYALRSADPYDAQAMLD-ALRVL---------------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHH-HHHHh---------------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            4445555555555777777765553 44442               5677777788899999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQ  366 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~  366 (414)
                      .+..+.+---++.|++.+||.+-
T Consensus        74 ~~~~p~~kAL~A~CL~al~Dp~W   96 (153)
T TIGR02561        74 AGAPPYGKALLALCLNAKGDAEW   96 (153)
T ss_pred             CCCchHHHHHHHHHHHhcCChHH
Confidence            88888777788999999999764

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=90.03  E-value=1.6  Score=42.61  Aligned_cols=134  Identities=14%  Similarity=0.114  Sum_probs=75.3

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  349 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~  349 (414)
                      +-..+.-.|||..|++...-       ... ..........+-.+..++.+|.||+.+++|.+|+..+..+|-.-...-.
T Consensus       128 LlRvh~LLGDY~~Alk~l~~-------idl-~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~  199 (404)
T PF10255_consen  128 LLRVHCLLGDYYQALKVLEN-------IDL-NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKN  199 (404)
T ss_pred             HHHHHHhccCHHHHHHHhhc-------cCc-ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            45566677888888765421       111 0111122223556788999999999999999999999999843211111


Q ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHH-HHHHHHHhhhc
Q psy793          350 ALFRRGRAQV-SMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLN-LEKMTYARMFQ  411 (414)
Q Consensus       350 a~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~-~~k~~~~~~f~  411 (414)
                      .+..+.--+- -.+..|+....+--|+.+.|.  +..+...+..-+...-..-+ -.-..|..+|.
T Consensus       200 ~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkeky~ek~~kmq~gd~~~f~elF~  265 (404)
T PF10255_consen  200 QYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEKYGEKMEKMQRGDEEAFEELFS  265 (404)
T ss_pred             hhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            1111111111 124556667777777788886  56665555444332222211 13345666665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.84  E-value=1.9  Score=38.44  Aligned_cols=92  Identities=11%  Similarity=0.044  Sum_probs=58.0

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..|..+...+..|-..++-+.....+++|+......-..+.   .....-....+.+-+|..+.++|++++|+.++.+++
T Consensus       116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~---~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi  192 (214)
T PF09986_consen  116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENED---FPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVI  192 (214)
T ss_pred             HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCc---CCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45666667777777777766666666666655432221111   000011234578889999999999999999999999


Q ss_pred             hcCCCCH-HHHHHHHH
Q psy793          342 LMEPNNV-KALFRRGR  356 (414)
Q Consensus       342 ~~~p~~~-~a~~~~g~  356 (414)
                      .....+. ..+..+|.
T Consensus       193 ~~~~~s~~~~l~~~AR  208 (214)
T PF09986_consen  193 GSKKASKEPKLKDMAR  208 (214)
T ss_pred             cCCCCCCcHHHHHHHH
Confidence            8754333 34455554

>KOG1550|consensus

Probab=89.83  E-value=2.7  Score=43.40  Aligned_cols=113  Identities=15%  Similarity=0.117  Sum_probs=81.8

Q ss_pred             HHHhhhHHh-----hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-----CHHHHHHH
Q psy793          267 IKNSGNEYF-----KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----AYKRAINL  336 (414)
Q Consensus       267 ~~~~G~~~~-----~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~~A~~~  336 (414)
                      ....|..++     ..++.+.|+.+|..|..-+....           ......+.+.+|.||.+..     ++..|+.+
T Consensus       247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-----------~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~  315 (552)
T KOG1550|consen  247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-----------TKGLPPAQYGLGRLYLQGLGVEKIDYEKALKL  315 (552)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-----------hhcCCccccHHHHHHhcCCCCccccHHHHHHH
Confidence            334455444     34699999999999987211100           1124457888999999843     78889999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMN---NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg---~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      +.++-++.  ++.+.|.+|.++..-.   ++..|..+|..|.+.-  +..+...++.++..
T Consensus       316 ~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~  372 (552)
T KOG1550|consen  316 YTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL  372 (552)
T ss_pred             HHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence            99998885  6788999999998765   6789999999998753  56666777766543

>KOG0530|consensus

Probab=88.98  E-value=18  Score=33.12  Aligned_cols=108  Identities=12%  Similarity=0.098  Sum_probs=87.0

Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHhcCCCCHHHHHHH
Q psy793          276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-KAYKRAINLCDDILLMEPNNVKALFRR  354 (414)
Q Consensus       276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~al~~~p~~~~a~~~~  354 (414)
                      +...-..|+..-..+|++                .|..-++|.-+=.|+..+ .+..+-+++++++++-+|.|...|..+
T Consensus        55 ~~E~S~RAl~LT~d~i~l----------------NpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHR  118 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRL----------------NPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHR  118 (318)
T ss_pred             ccccCHHHHHHHHHHHHh----------------CcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHH
Confidence            344556788888888877                777777777776666654 457788899999999999999999999


Q ss_pred             HHHHHHcCCHH-HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          355 GRAQVSMNNFE-QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       355 g~~~~~lg~~~-~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      -.+...+|+.. .-+...+.++..+..|-.++....-+.+..+...
T Consensus       119 r~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~  164 (318)
T KOG0530|consen  119 RVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYE  164 (318)
T ss_pred             HHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHH
Confidence            89999999888 7888999999999888888888888877766643

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.78  E-value=1.4  Score=27.03  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHH--HHHHHhcCCCC
Q psy793          315 AALLNMAAVQLKFKAYKRAINL--CDDILLMEPNN  347 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~--~~~al~~~p~~  347 (414)
                      ..++.+|.++...|+|++|+..  +.-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3567889999999999999999  55888887754

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0292|consensus

Probab=88.63  E-value=7.9  Score=41.15  Aligned_cols=130  Identities=8%  Similarity=0.100  Sum_probs=79.3

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-----hh--CHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-----FK--AYKRA  333 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-----l~--~~~~A  333 (414)
                      +.......+.|..+...|+|.+|+++|+.+|-.++-...+..++. .+.+.....+...+....+.     ++  ....+
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~-aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~ 1066 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEE-AEADELIKICREYIVGLSVELERRKLKKPNLEQQ 1066 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhH-HHHHHHHHHHHHHHhhheeeeeecccCCchHHHH
Confidence            455677788999999999999999999999977654443333222 22222222221222222111     11  23333


Q ss_pred             --HHHHHHHHhcCCCCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          334 --INLCDDILLMEPNNVKALFRRG-RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       334 --~~~~~~al~~~p~~~~a~~~~g-~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                        +..|=.-..+.|...-.-.+.| .++++++++..|....++.+++.|..+.+......+
T Consensus      1067 ~ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rki~ 1127 (1202)
T KOG0292|consen 1067 LELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARKIK 1127 (1202)
T ss_pred             HHHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence              2222233455565444334444 468899999999999999999999887766554443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=88.58  E-value=4.9  Score=35.68  Aligned_cols=71  Identities=17%  Similarity=0.136  Sum_probs=59.6

Q ss_pred             HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      .-+++.+...+|+.....-++-+|.+......+-+.+.-.|+|++|...++-+-++.|++..-...+..+.
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li   79 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI   79 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH
Confidence            35667888999999999999999999988888888899999999999999999999999865444444433

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=88.46  E-value=2.3  Score=35.19  Aligned_cols=51  Identities=10%  Similarity=0.156  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      ......++...+..|+|..|......++..+|+|..++..++.++.+++.+
T Consensus        70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~  120 (141)
T PF14863_consen   70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ  120 (141)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence            334445555555555555555555555555555555555555555555444

>KOG0529|consensus

Probab=88.40  E-value=6.8  Score=38.01  Aligned_cols=107  Identities=13%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHhcCCCCHHHH
Q psy793          274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YKRAINLCDDILLMEPNNVKAL  351 (414)
Q Consensus       274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~A~~~~~~al~~~p~~~~a~  351 (414)
                      ..++...++-+..-..||..                .|..-.+|.-+.+++.+...  |..-++.|+++|+.||.|-.+|
T Consensus        85 ~ek~~~ld~eL~~~~~~L~~----------------npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W  148 (421)
T KOG0529|consen   85 LEKQALLDEELKYVESALKV----------------NPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW  148 (421)
T ss_pred             HHHHHhhHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence            33444566667777777777                78888999999999987653  7899999999999999998876


Q ss_pred             -HHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          352 -FRRGRAQVSMNN---FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       352 -~~~g~~~~~lg~---~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                       ||+=.+-.....   ..+-+....+++.-++.|-.++.....+...+-
T Consensus       149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l~  197 (421)
T KOG0529|consen  149 HYRRFVVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLSTLH  197 (421)
T ss_pred             HHHHHHHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHHHhc
Confidence             455444444444   677788899999999999999988888877443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=88.36  E-value=13  Score=39.02  Aligned_cols=120  Identities=12%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             HHHHHHHhhhHHh-hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYF-KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       263 ~a~~~~~~G~~~~-~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      .+......|..++ ...+++.|..+..+++.+...          ..+......+.+-++.++.+.+... |+..++++|
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~----------~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I  126 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCER----------HRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAI  126 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc----------cchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHH
Confidence            4777888888888 677999999999999988433          2234455666677788988888777 999999999


Q ss_pred             hcCCC---C-HHHHHHHHHHHH--HcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHH
Q psy793          342 LMEPN---N-VKALFRRGRAQV--SMNNFEQGLQDYEQALDLL--PNDQQILKEIAFVRK  393 (414)
Q Consensus       342 ~~~p~---~-~~a~~~~g~~~~--~lg~~~~A~~~~~~al~l~--P~~~~~~~~l~~~~~  393 (414)
                      +.-..   . ..-.|++-.+..  ..+++..|+..+++...+.  ++++.+...+..+..
T Consensus       127 ~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~  186 (608)
T PF10345_consen  127 EDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEA  186 (608)
T ss_pred             HHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHH
Confidence            77544   2 333445543322  2379999999999999887  566665554444433

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG2561|consensus

Probab=88.32  E-value=6.9  Score=38.25  Aligned_cols=111  Identities=11%  Similarity=0.070  Sum_probs=74.4

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH----------
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY----------  330 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------  330 (414)
                      .-.+..+.+.|..+++...|.+|+.+.-.|=+++....     ....+...+++.+-..+-|||+.+++.          
T Consensus       160 lmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd-----~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL  234 (568)
T KOG2561|consen  160 LMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCD-----SKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRL  234 (568)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhh-----HHHHHhhcchhhhhcchhheehhhcccccCChHHHHH
Confidence            34567789999999999999999999887776643222     233333455666777788999998862          


Q ss_pred             HHHHHHHHHHH--------hcC-CCCH-HHHH-----HHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          331 KRAINLCDDIL--------LME-PNNV-KALF-----RRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       331 ~~A~~~~~~al--------~~~-p~~~-~a~~-----~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      ..|.+.+.++.        .+. +..+ +|++     --|...+++|+-++|..+++.|..
T Consensus       235 ~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  235 VRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             HHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            22333333222        111 2222 3333     348999999999999999998875

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.39  E-value=19  Score=34.93  Aligned_cols=86  Identities=15%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHH-HHhhCCCCHHH
Q psy793          313 YTAALLNMAAVQLKFKAYKRAINLCDDILLM----EPNNVKALFRRGRAQVS---MNNFEQGLQDYEQ-ALDLLPNDQQI  384 (414)
Q Consensus       313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~----~p~~~~a~~~~g~~~~~---lg~~~~A~~~~~~-al~l~P~~~~~  384 (414)
                      ...+..|+-.+|....+|+.-+...+..-.+    -++.....+..|.|+-+   .|+.++|+..+.. .....+.+++.
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~  219 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT  219 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence            3456678889999999999999988887766    45566677788888888   8999999999999 44556778999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          385 LKEIAFVRKQMRHH  398 (414)
Q Consensus       385 ~~~l~~~~~~~~~~  398 (414)
                      .-.++.++..+-..
T Consensus       220 ~gL~GRIyKD~~~~  233 (374)
T PF13281_consen  220 LGLLGRIYKDLFLE  233 (374)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999887554

>COG4070 Predicted peptidyl-prolyl cis-trans isomerase (rotamase), cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=87.37  E-value=1.2  Score=42.43  Aligned_cols=23  Identities=26%  Similarity=0.404  Sum_probs=20.8

Q ss_pred             eEEEEEcCCcchhhHHHHHHhhh
Q psy793           26 RMVIELFKHIVPKTAENFRALCT   48 (414)
Q Consensus        26 ~i~ieL~~~~aP~~~~nF~~l~~   48 (414)
                      -|+||||.|.||+++.-|.++..
T Consensus       377 iieIELyed~APrSv~yFRr~t~  399 (512)
T COG4070         377 IIEIELYEDRAPRSVWYFRRSTG  399 (512)
T ss_pred             EEEEEecCCCCchhhHHHHhhcc
Confidence            48999999999999999998873

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=86.92  E-value=5.4  Score=36.47  Aligned_cols=64  Identities=16%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ...|..|++.|+|++|+..|+.+........          =......++..+..|+.++++.+..+..+-+.+
T Consensus       182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg----------W~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl  245 (247)
T PF11817_consen  182 LEMAEEYFRLGDYDKALKLLEPAASSYRREG----------WWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL  245 (247)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC----------cHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence            3567777777777777777777754422110          023445666677777777777777777665554

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=86.53  E-value=7  Score=39.65  Aligned_cols=72  Identities=17%  Similarity=0.051  Sum_probs=62.1

Q ss_pred             HHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCHHHHHHHHHH
Q psy793          320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       320 la~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~-al~l~P~~~~~~~~l~~~  391 (414)
                      ++..+..++....+......++..+|++..++.++|.++...+....++..+.. +....|.+......+-.+
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  145 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRF  145 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHH
Confidence            688888899998999999999999999999999999999988887777766666 999999998888877333

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.53  E-value=9.1  Score=27.81  Aligned_cols=40  Identities=13%  Similarity=0.163  Sum_probs=19.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH-------HHhhCCCCHHHHHHHHHH
Q psy793          352 FRRGRAQVSMNNFEQGLQDYEQ-------ALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       352 ~~~g~~~~~lg~~~~A~~~~~~-------al~l~P~~~~~~~~l~~~  391 (414)
                      ..+|.-+-..|++++|+.+|++       ++...|+++.......++
T Consensus        10 a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki   56 (75)
T cd02682          10 AINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMI   56 (75)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence            3444444444554444444444       444567766544433333

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>KOG3617|consensus

Probab=86.46  E-value=8.4  Score=40.79  Aligned_cols=64  Identities=8%  Similarity=0.026  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhc---------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLM---------------------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQ  373 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~---------------------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  373 (414)
                      .+|.--|..+...|+.+.|+.+|..|-..                     ...+-.|-|.+|.-|...|++.+|+..|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45566677778889999999988887532                     234566889999999999999999999988


Q ss_pred             HHhhC
Q psy793          374 ALDLL  378 (414)
Q Consensus       374 al~l~  378 (414)
                      |-.+.
T Consensus       993 Aqafs  997 (1416)
T KOG3617|consen  993 AQAFS  997 (1416)
T ss_pred             HHHHH
Confidence            76543

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.17  E-value=9.9  Score=27.97  Aligned_cols=39  Identities=10%  Similarity=-0.069  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      ..+.|....++|..+=..|+.++|+.+|+++++.+....
T Consensus         4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~   42 (79)
T cd02679           4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGI   42 (79)
T ss_pred             HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHc
Confidence            456788889999999999999999999999999986443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=86.10  E-value=21  Score=30.72  Aligned_cols=69  Identities=13%  Similarity=0.093  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      +..--.++..+|.-|.+.|++++|++.|.++....-..   ...++++-.+....++|........+|-.+-
T Consensus        32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            34445789999999999999999999999988775332   3567888888889999999999999998764

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG0652 PpiB Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family [Posttranslational modification, protein turnover, chaperones]

Probab=85.85  E-value=0.28  Score=41.32  Aligned_cols=22  Identities=59%  Similarity=0.945  Sum_probs=19.2

Q ss_pred             ccccchhcchhhhHhhcCCCCc
Q psy793          106 VISQYFHRIIPQFMIQGGDITN  127 (414)
Q Consensus       106 ~~~~~f~~~~~~~~~~~g~~~~  127 (414)
                      |....|||+++.||+||||+.+
T Consensus        36 Ydg~~FHRVi~~FmiQgGd~~~   57 (158)
T COG0652          36 YDGTIFHRVIPGFMIQGGDPTG   57 (158)
T ss_pred             CCCceEEEeecCceeecCCCCC
Confidence            4578899999999999999874

>KOG1839|consensus

Probab=85.79  E-value=6.3  Score=43.66  Aligned_cols=106  Identities=13%  Similarity=0.164  Sum_probs=86.4

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+....+.|......+.|.+|.+ ..+++.+++..        ...+.+....+|..+|..+.+++++++|+..+.+|.-
T Consensus       931 ~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v--------~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen  931 EAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNV--------MGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACI 1001 (1236)
T ss_pred             hhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHh--------hhhcchhHHHHHHHHHHHHhhhcchHHHHHhccccee
Confidence            35667788888888999999988 77777775421        1223577889999999999999999999999999875


Q ss_pred             cC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          343 ME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       343 ~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      +.        |+...+|-+++...+..+....|+..+.+++.+
T Consensus      1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            53        455678999999999999999999999999875

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=85.76  E-value=1.5  Score=42.83  Aligned_cols=60  Identities=15%  Similarity=0.355  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLME---------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~---------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      ....+..++.-+|+|..|++..+.. +++         +-+...+|..|-||+.+++|.+|++.|..++-
T Consensus       124 SligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  124 SLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456677888899999999876544 222         33567899999999999999999999998874

>KOG2300|consensus

Probab=85.68  E-value=13  Score=37.02  Aligned_cols=100  Identities=17%  Similarity=0.133  Sum_probs=77.6

Q ss_pred             HHHHHHhhhHHh-hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYF-KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDIL  341 (414)
Q Consensus       264 a~~~~~~G~~~~-~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al  341 (414)
                      |......|..++ -..+++.|..+.++|+.+.....         .+......++.-++.||.... .+..|.....+|+
T Consensus        46 art~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip---------~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkai  116 (629)
T KOG2300|consen   46 ARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIP---------SFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAI  116 (629)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccc---------cHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            555666666655 47899999999999999865433         112334567788999999888 7899999999999


Q ss_pred             hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHH
Q psy793          342 LMEPNNV----KALFRRGRAQVSMNNFEQGLQDYE  372 (414)
Q Consensus       342 ~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~  372 (414)
                      ++....+    +..+.+++.+.-..|+..|++.+.
T Consensus       117 elsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen  117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            9976554    677889999999999999988744

>KOG0529|consensus

Probab=85.45  E-value=36  Score=33.20  Aligned_cols=74  Identities=19%  Similarity=0.190  Sum_probs=63.3

Q ss_pred             HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      .+..-+++-+.+...+|+++|+...+|+.+..++.+.+  ++..-++..+++++.+|.|-.++.....+.......
T Consensus        86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~  161 (421)
T KOG0529|consen   86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERS  161 (421)
T ss_pred             HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcc
Confidence            33445778888999999999999999999999999775  478889999999999999998888888887776666

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=85.44  E-value=12  Score=34.22  Aligned_cols=83  Identities=18%  Similarity=0.153  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC------CHHHHHHH
Q psy793          281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN------NVKALFRR  354 (414)
Q Consensus       281 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~------~~~a~~~~  354 (414)
                      ...+..+.+|++.+.....          ......+...+|.-|+++|+|++|+..++.+...-..      ....+..+
T Consensus       155 ~~iI~lL~~A~~~f~~~~~----------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l  224 (247)
T PF11817_consen  155 KLIIELLEKAYEQFKKYGQ----------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRL  224 (247)
T ss_pred             HHHHHHHHHHHHHHHHhcc----------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            4556667777766544331          2344566778999999999999999999999755321      23567788


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q psy793          355 GRAQVSMNNFEQGLQDYEQ  373 (414)
Q Consensus       355 g~~~~~lg~~~~A~~~~~~  373 (414)
                      ..|+..+|+.+..+...-+
T Consensus       225 ~~Ca~~~~~~~~~l~~~le  243 (247)
T PF11817_consen  225 LECAKRLGDVEDYLTTSLE  243 (247)
T ss_pred             HHHHHHhCCHHHHHHHHHH
Confidence            8999999999887765443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>KOG2047|consensus

Probab=85.28  E-value=41  Score=34.91  Aligned_cols=123  Identities=16%  Similarity=0.197  Sum_probs=82.1

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..|-..|+.+.|...|++|+.. +...           ......+|.+-|..-++..+++.|+...++|..+..
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V-~y~~-----------v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~  456 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKV-PYKT-----------VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPT  456 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcC-Cccc-----------hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCC
Confidence            3556788888888888888888888864 1111           234456777777777788888888888888775522


Q ss_pred             C------------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          346 N------------------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       346 ~------------------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      .                  +.+.|-..+.....+|=++...+.|++.++|----+.+..+.+..+..-+.-++
T Consensus       457 ~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfee  529 (835)
T KOG2047|consen  457 NPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEE  529 (835)
T ss_pred             chhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHH
Confidence            1                  133444455556666677777777777777776667777777666655444443

>KOG1839|consensus

Probab=84.91  E-value=7.3  Score=43.18  Aligned_cols=109  Identities=15%  Similarity=0.099  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.+..++..+..+.+.+++++|+..-.+|.-+.+...        ....+.....|.|++...+..++...|+..+.+++
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~--------g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL--------GKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc--------cCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence            4567788899999999999999998888876532211        11146777889999999999999999999988887


Q ss_pred             hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          342 LM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       342 ~~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      .+        .|.-+-..-+++..+..+++++-|+.+++.|+.++
T Consensus      1043 ~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1043 KLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             HhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            65        35455556788888889999999999999999865

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.71  E-value=34  Score=36.72  Aligned_cols=109  Identities=18%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      ...-....+-......+|.+|-....++...++.......       .......-.-.|.+....++.++|++.++.++.
T Consensus       414 ~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~-------~~l~ae~~aL~a~val~~~~~e~a~~lar~al~  486 (894)
T COG2909         414 TPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQ-------GDLLAEFQALRAQVALNRGDPEEAEDLARLALV  486 (894)
T ss_pred             CchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccch-------hhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            3444455677777778888888887777776543221111       233445555677888889999999999999998


Q ss_pred             cCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          343 MEPNN-----VKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       343 ~~p~~-----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      .-|.+     .-++...|.+.+-.|++++|..+.+.+.++.
T Consensus       487 ~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a  527 (894)
T COG2909         487 QLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMA  527 (894)
T ss_pred             hcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHH
Confidence            87765     3577788999999999999999999998874

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=84.44  E-value=33  Score=33.30  Aligned_cols=118  Identities=12%  Similarity=0.078  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHhhhHHhhhc---------CHHHHHHHHHHHHHHHHhhccCCcHHHH-HhhHHHHHHHHHHHHHHHHHhh
Q psy793          259 QMEDVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWYNQSQSKTQQ-KHFRSYYTAALLNMAAVQLKFK  328 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~Al~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~l~  328 (414)
                      -..+.+..+++.|-.+.+.+         ..+.|..+|+.|--++............ ..+++....++..++.+.-+..
T Consensus       109 l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~~lmLAQAQEc  188 (361)
T cd09239         109 IKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNYSLMLAQAQEC  188 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            45677888888888876544         3677888888887766533322111111 2445555666666555544443


Q ss_pred             CHHHHH-----------------HHHHHHHhc------C-----C----CC------------HHHHHHHHHHHHHcCCH
Q psy793          329 AYKRAI-----------------NLCDDILLM------E-----P----NN------------VKALFRRGRAQVSMNNF  364 (414)
Q Consensus       329 ~~~~A~-----------------~~~~~al~~------~-----p----~~------------~~a~~~~g~~~~~lg~~  364 (414)
                      =|.+|+                 .+|+.|++.      +     +    .+            +.++|+.|......+++
T Consensus       189 ~~~Kai~d~~k~sliAKLA~q~~~~Y~~a~~~l~~~~~~~~~~~~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~  268 (361)
T cd09239         189 LLEKSLLDNRKSHITAKVSAQVVEYYKEALRALENWESNSKIILGKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKM  268 (361)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            343332                 234444432      1     1    11            23556677777766778


Q ss_pred             HHHHHHHHHHHh
Q psy793          365 EQGLQDYEQALD  376 (414)
Q Consensus       365 ~~A~~~~~~al~  376 (414)
                      -+++..|+.|..
T Consensus       269 Ge~Ia~L~~A~~  280 (361)
T cd09239         269 GERVAYYQLAND  280 (361)
T ss_pred             HHHHHHHHHHHH
Confidence            888887777766

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=84.22  E-value=1.3  Score=24.73  Aligned_cols=24  Identities=25%  Similarity=0.086  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      .+++++|.++..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            467899999999999999998765

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=83.65  E-value=17  Score=33.87  Aligned_cols=96  Identities=17%  Similarity=0.130  Sum_probs=69.6

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhcCCCC-HHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNN-VKAL  351 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~-~~a~  351 (414)
                      ..++.+|+..|.++.+                  .....+.+++|..|..    ..++.+|..++.+|.+..-.. ..+.
T Consensus        90 ~~~~~~A~~~~~~~a~------------------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~  151 (292)
T COG0790          90 SRDKTKAADWYRCAAA------------------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAM  151 (292)
T ss_pred             cccHHHHHHHHHHHhh------------------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHH
Confidence            3457788888875553                  3445677788888887    558999999999999885433 3458


Q ss_pred             HHHHHHHHHc-----C--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          352 FRRGRAQVSM-----N--NFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       352 ~~~g~~~~~l-----g--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      +++|.+|..-     -  +...|+..|.++....  +..+...++.++
T Consensus       152 ~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y  197 (292)
T COG0790         152 YRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMY  197 (292)
T ss_pred             HHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHH
Confidence            8888888763     1  3347999999988876  666777777655

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=83.53  E-value=15  Score=35.85  Aligned_cols=100  Identities=12%  Similarity=0.113  Sum_probs=65.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH--hhCHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRAINLCDDIL  341 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~A~~~~~~al  341 (414)
                      +.....++..+|+.++|..|...+...+..++...              ....+..++.+|..  .-+|.+|.+.+++.+
T Consensus       131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~--------------~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~  196 (379)
T PF09670_consen  131 GDREWRRAKELFNRYDYGAAARILEELLRRLPGRE--------------EYQRYKDLCEGYDAWDRFDHKEALEYLEKLL  196 (379)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchh--------------hHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45667788899999999999999999887422111              13556666666654  556778877777665


Q ss_pred             hcCC------------------------------C-C-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          342 LMEP------------------------------N-N-------VKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       342 ~~~p------------------------------~-~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      ...-                              . .       ..-++.-|.=....|+|+.|+.-+-+++++
T Consensus       197 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~lEl  270 (379)
T PF09670_consen  197 KRDKALNQEREGLKELVEVLKALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRALEL  270 (379)
T ss_pred             HHhhhhHhHHHHHHHHHHHHHHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4210                              0 0       011222333344578999999998888875

>KOG2422|consensus

Probab=83.49  E-value=16  Score=37.10  Aligned_cols=124  Identities=23%  Similarity=0.163  Sum_probs=87.9

Q ss_pred             HHhhhHHhh---hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc-
Q psy793          268 KNSGNEYFK---LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM-  343 (414)
Q Consensus       268 ~~~G~~~~~---~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~-  343 (414)
                      ...|+.+|+   ...|++|...|.-|+...+.+....-    ....|..+..++.+|..+..+|+.+-|-...+++|=. 
T Consensus       239 sq~~isfF~~~hs~sYeqaq~~F~~av~~~d~n~v~~l----L~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~  314 (665)
T KOG2422|consen  239 SQKGISFFKFEHSNSYEQAQRDFYLAVIVHDPNNVLIL----LISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVF  314 (665)
T ss_pred             ccCceeEEEeecchHHHHHHHHHHHHHhhcCCcceeee----eccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Confidence            345666664   45788899988888877554332111    1114778888999999999999988877777776611 


Q ss_pred             --------------------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHH
Q psy793          344 --------------------EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-DQQILKEIAFVRKQM  395 (414)
Q Consensus       344 --------------------~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-~~~~~~~l~~~~~~~  395 (414)
                                          .|.|   ..++|+.-+.+.+.|.+.-|.+.++..+.++|. |+-+...+-.++...
T Consensus       315 d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALr  390 (665)
T KOG2422|consen  315 DRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALR  390 (665)
T ss_pred             HHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHH
Confidence                                2333   356777778888899999999999999999998 876665555554433

>KOG0530|consensus

Probab=83.22  E-value=12  Score=34.21  Aligned_cols=86  Identities=15%  Similarity=0.183  Sum_probs=68.5

Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM  404 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~  404 (414)
                      +...-..|+.....+|.++|-+...|..+-.++..+ .+..+-+..+...++-+|.|-.++...+.+...++...-.|=.
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            344557888889999999999998887666666665 6788899999999999999999999999888888755545555


Q ss_pred             HHHhhhc
Q psy793          405 TYARMFQ  411 (414)
Q Consensus       405 ~~~~~f~  411 (414)
                      ..+.|+.
T Consensus       135 f~~~~l~  141 (318)
T KOG0530|consen  135 FTKLMLD  141 (318)
T ss_pred             HHHHHHh
Confidence            5566654

>KOG0879|consensus

Probab=82.85  E-value=0.51  Score=37.81  Aligned_cols=27  Identities=41%  Similarity=0.769  Sum_probs=23.4

Q ss_pred             CcccccccccchhcchhhhHhhcCCCC
Q psy793          100 ENFKLKVISQYFHRIIPQFMIQGGDIT  126 (414)
Q Consensus       100 ~~~~~~~~~~~f~~~~~~~~~~~g~~~  126 (414)
                      ...++.++...|||++.+||+||||+.
T Consensus        54 ~g~PiGYK~~tFHRvIkdFMiQgGDFv   80 (177)
T KOG0879|consen   54 DGVPIGYKNSTFHRVIKDFMIQGGDFV   80 (177)
T ss_pred             CCccccccccchHHHhhhheeccCcee
Confidence            345677889999999999999999977

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=82.67  E-value=4.2  Score=33.63  Aligned_cols=51  Identities=22%  Similarity=0.279  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE  365 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~  365 (414)
                      .....+|...+..|+|+-|+..++.++..+|++..+..-++.++..++.-.
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~  121 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQS  121 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhc
Confidence            456678888899999999999999999999999999999999999887543

>KOG1258|consensus

Probab=82.54  E-value=58  Score=33.36  Aligned_cols=110  Identities=9%  Similarity=0.013  Sum_probs=78.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+..-...-.+.|+++.....|.+++--                -.++...|.+.+.-....|+.+-|-....++.++
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~----------------cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i  360 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIP----------------CALYDEFWIKYARWMESSGDVSLANNVLARACKI  360 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhH----------------HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhh
Confidence            344555566667889999999999998866                4566677777777777777777777777777666


Q ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          344 E-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       344 ~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      . |..+..+..-+..-...|++..|...|+++.+-.|+...+...-.
T Consensus       361 ~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~  407 (577)
T KOG1258|consen  361 HVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKI  407 (577)
T ss_pred             cCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHH
Confidence            3 555566666667777778888888888888876677655443333

>KOG0881|consensus

Probab=82.49  E-value=0.46  Score=37.61  Aligned_cols=20  Identities=65%  Similarity=0.953  Sum_probs=17.8

Q ss_pred             cccchhcchhhhHhhcCCCC
Q psy793          107 ISQYFHRIIPQFMIQGGDIT  126 (414)
Q Consensus       107 ~~~~f~~~~~~~~~~~g~~~  126 (414)
                      ....|||+++.|++||||++
T Consensus        47 n~v~FHRii~DFmiQGGDPT   66 (164)
T KOG0881|consen   47 NGVIFHRIIKDFMIQGGDPT   66 (164)
T ss_pred             cceeeeehhhhheeecCCCC
Confidence            36789999999999999866

>KOG1463|consensus

Probab=82.39  E-value=18  Score=34.31  Aligned_cols=123  Identities=12%  Similarity=0.069  Sum_probs=84.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHH--HHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA--LLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~--~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +..=...|..+...++|.-|..+|-+|.+-+.....          +..-...  |+-++...+-+-+--.++-..+.++
T Consensus       209 a~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~----------~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l  278 (411)
T KOG1463|consen  209 ATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDD----------DVKALTSLKYMLLCKIMLNLPDDVAALLSAKLAL  278 (411)
T ss_pred             HHHHHhccceeecccccchHHHHHHHHHccccccCC----------cHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHH
Confidence            444556788888899999999999999876443331          1122222  4444444444444445666778888


Q ss_pred             hcCCCCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVS--MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~--lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      +.+.....|+-..|.++..  +.+|+.|+..|++=+.-+   +-++..+..++..+-+++
T Consensus       279 ~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D---~ivr~Hl~~Lyd~lLEkn  335 (411)
T KOG1463|consen  279 KYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAED---PIVRSHLQSLYDNLLEKN  335 (411)
T ss_pred             hccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcC---hHHHHHHHHHHHHHHHHh
Confidence            9888899999999999764  589999999999887755   456666666665554443

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.13  E-value=12  Score=34.52  Aligned_cols=62  Identities=16%  Similarity=0.004  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Q psy793          283 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS  360 (414)
Q Consensus       283 A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~  360 (414)
                      |..+|.+|+.+                .|..-..|..+|..+...++.-.|+-+|-+++......+.|.-++...+..
T Consensus         1 A~~~Y~~A~~l----------------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRL----------------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-----------------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHh----------------CCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999                566668899999999999999999999999998876678888888877777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2114|consensus

Probab=82.11  E-value=14  Score=39.22  Aligned_cols=33  Identities=9%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK  295 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~  295 (414)
                      .+...+.-|+.+|++|+|++|...|-++|..++
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le  399 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE  399 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence            356678899999999999999999999997654

>KOG2581|consensus

Probab=81.73  E-value=30  Score=33.73  Aligned_cols=69  Identities=19%  Similarity=0.218  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHH--hcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDIL--LMEP--NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al--~~~p--~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      ..+.+-+-.+|+.-+.|+.|-....++-  +...  ..+..+|.+|.+..-+.+|..|.+++-.|+...|++.
T Consensus       209 avLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  209 AVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            3444555678888888999987777665  2222  3345677899999999999999999999999999854

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.33  E-value=18  Score=26.35  Aligned_cols=34  Identities=12%  Similarity=0.001  Sum_probs=28.6

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW  296 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~  296 (414)
                      .+..+..+|...=..|+|++|+..|..||+++-.
T Consensus         5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            4566777888888899999999999999998644

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=81.08  E-value=2.4  Score=38.49  Aligned_cols=53  Identities=19%  Similarity=0.233  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          329 AYKRAINLCDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      ....|.+.++.||-.....      .-+-++++.+++.+.+|+-|..+|.+|+.+.-++
T Consensus        54 ~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d  112 (368)
T COG5091          54 TMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDD  112 (368)
T ss_pred             ChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcc
Confidence            3567888899998664321      2356889999999999999999999999986543

>TIGR02710 CRISPR-associated protein, TIGR02710 family

Probab=80.97  E-value=25  Score=34.30  Aligned_cols=63  Identities=10%  Similarity=0.056  Sum_probs=46.0

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH--hhCHHHHHHHHH
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--FKAYKRAINLCD  338 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--l~~~~~A~~~~~  338 (414)
                      ......+..+|++.+|..|...|..+++...+..           .......+.+++.+|..  .-++++|.+.++
T Consensus       131 ~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~-----------~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~  195 (380)
T TIGR02710       131 NTEQGYARRAINAFDYLFAHARLETLLRRLLSAV-----------NHTFYEAMIKLTRAYLHWDRFEHEEALDYLN  195 (380)
T ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHhcccChh-----------hhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence            4445577799999999999999999997621111           23456777788887766  556888888887

Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).

>KOG3807|consensus

Probab=80.91  E-value=46  Score=31.60  Aligned_cols=52  Identities=6%  Similarity=0.073  Sum_probs=36.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHHHHHHHHHH
Q psy793          352 FRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       352 ~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      -|+|.|..++|+..+|++.++...+--|-.  -.++.+|-+....++.+...+.
T Consensus       279 RRLAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqa  332 (556)
T KOG3807|consen  279 RRLAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQA  332 (556)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999887766632  3455555555555555555443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=80.79  E-value=7.1  Score=35.86  Aligned_cols=78  Identities=12%  Similarity=0.081  Sum_probs=65.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      .+.+.+.=+.+...++++.|..+-.+.+.+                .|....-+.-+|.+|.+++.+.-|+++++..++.
T Consensus       181 ~rll~~lk~~~~~e~~~~~al~~~~r~l~l----------------~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~  244 (269)
T COG2912         181 SRLLRNLKAALLRELQWELALRVAERLLDL----------------NPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH  244 (269)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHHHHHhh----------------CCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence            444555666788889999999999999988                6777777788999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRA  357 (414)
Q Consensus       344 ~p~~~~a~~~~g~~  357 (414)
                      .|+.+.+-.-++..
T Consensus       245 ~P~~~~a~~ir~~l  258 (269)
T COG2912         245 CPDDPIAEMIRAQL  258 (269)
T ss_pred             CCCchHHHHHHHHH
Confidence            99998876655443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.74  E-value=2.8  Score=27.01  Aligned_cols=27  Identities=15%  Similarity=0.266  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      .+++|.+|+++|+++.|...+++++.-
T Consensus         2 kLdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         2 KLDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             chHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            368999999999999999999999953

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=80.62  E-value=2.2  Score=38.35  Aligned_cols=116  Identities=14%  Similarity=0.170  Sum_probs=61.3

Q ss_pred             hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHh-hHHHHHHHHHHHHHHHHHhhC-HHHHH-HHHHHHHh-cC-CCCHH
Q psy793          275 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH-FRSYYTAALLNMAAVQLKFKA-YKRAI-NLCDDILL-ME-PNNVK  349 (414)
Q Consensus       275 ~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~-~~~~~~~~~~nla~~~~~l~~-~~~A~-~~~~~al~-~~-p~~~~  349 (414)
                      |..|+|+.|+.....||+.--..     ++.... .......-..+-|....+.|. ++-.. ..+..+.. .+ |+...
T Consensus        94 ~D~Gd~~~AL~ia~yAI~~~l~~-----Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vr  168 (230)
T PHA02537         94 FDIGDFDGALEIAEYALEHGLTM-----PDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVR  168 (230)
T ss_pred             eeccCHHHHHHHHHHHHHcCCCC-----CccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHH
Confidence            45689999999999999862111     111111 111222223333444444444 11111 11111111 11 44454


Q ss_pred             H--HHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          350 A--LFRRGRAQV---------SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       350 a--~~~~g~~~~---------~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      |  |-..|..+.         ..++...|+..|++|++++|+ ..+...+..+..+++
T Consensus       169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr  225 (230)
T PHA02537        169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLK  225 (230)
T ss_pred             HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHh
Confidence            4  444455552         346788999999999999975 445555666666555

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=80.52  E-value=24  Score=32.46  Aligned_cols=102  Identities=4%  Similarity=-0.020  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHH-HHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK-RAINLCD  338 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~-~A~~~~~  338 (414)
                      ..+..+.+..-+..+++.+++..|.+.-.-.++.+....           .+.......+++.++..+..-+ +.....+
T Consensus         6 y~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~-----------~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~   74 (260)
T PF04190_consen    6 YDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSE-----------DPVDEESIARLIELISLFPPEEPERKKFIK   74 (260)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT--------------SHHHHHHHHHHHHHS-TT-TTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            445667788888889999999999888777776655433           2222223345555555443221 2344445


Q ss_pred             HHHhcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy793          339 DILLME------PNNVKALFRRGRAQVSMNNFEQGLQDYE  372 (414)
Q Consensus       339 ~al~~~------p~~~~a~~~~g~~~~~lg~~~~A~~~~~  372 (414)
                      +|++..      -.++..|..+|..+..-+++.+|...|-
T Consensus        75 ~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl  114 (260)
T PF04190_consen   75 AAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL  114 (260)
T ss_dssp             HHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            555442      2467888889999999999988877664

; PDB: 3LKU_E 2WPV_G.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=80.48  E-value=16  Score=29.89  Aligned_cols=53  Identities=13%  Similarity=0.040  Sum_probs=34.4

Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      +.++-++--+.+....+.+..++..++.+|.+|..+|+..+|-+.+++|.+.-
T Consensus        98 ~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   98 KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence            33444444444444454556788999999999999999999999999998753

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0880|consensus

Probab=80.21  E-value=0.5  Score=40.66  Aligned_cols=21  Identities=62%  Similarity=1.075  Sum_probs=18.6

Q ss_pred             ccccchhcchhhhHhhcCCCC
Q psy793          106 VISQYFHRIIPQFMIQGGDIT  126 (414)
Q Consensus       106 ~~~~~f~~~~~~~~~~~g~~~  126 (414)
                      |.+..|||++|.+|+||||++
T Consensus        85 Y~gS~FhRVi~nfmIQGGd~t  105 (217)
T KOG0880|consen   85 YKGSKFHRVIPNFMIQGGDFT  105 (217)
T ss_pred             cCCceeeeeecCceeecCccc
Confidence            456779999999999999988

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	414
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		1e-81
2plu_A	186	Crystal Structure Of Cryptosporidium Parvum Cycloph		5e-44
1dyw_A	173	Biochemical And Structural Characterization Of A Di		5e-43
1qng_A	170	Plasmodium Falciparum Cyclophilin Complexed With Cy		2e-42
1qnh_A	170	Plasmodium Falciparum Cyclophilin (Double Mutant) C		3e-41
2hqj_A	183	Cyclophilin From Leishmania Major Length = 183		5e-41
2esl_A	190	Human Cyclophilin C In Complex With Cyclosporin A L		5e-37
2rmc_A	182	Crystal Structure Of Murine Cyclophilin C Complexed		1e-36
1ist_A	162	Crystal Structure Of Yeast Cyclophilin A, Cpr1 Leng		2e-36
1qoi_A	177	U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length =		1e-35
1xo7_A	166	Crystal Structure Of Cyclophilin From Trypanosoma C		2e-35
3r49_A	166	Human Cyclophilin D Complexed With Quinolin-8-Amine		4e-35
2bit_X	165	Crystal Structure Of Human Cyclophilin D At 1.7 A R		4e-35
3qyu_A	164	Crystal Structure Of Human Cyclophilin D At 1.54 A		4e-35
2z6w_A	165	Crystal Structure Of Human Cyclophilin D In Complex		4e-35
1c5f_A	177	Crystal Structure Of The Cyclophilin-Like Domain Fr		5e-35
2alf_A	164	Crystal Structure Of Human Cypa Mutant K131a Length		1e-34
2x83_B	163	Evolutionary Basis Of Hiv Restriction By The Antire		2e-34
3rdd_A	184	Human Cyclophilin A Complexed With An Inhibitor Len		2e-34
4frv_A	185	Crystal Structure Of Mutated Cyclophilin B That Cau		2e-34
2rma_A	165	Crystal Structures Of Cyclophilin A Complexed With		2e-34
4fru_A	185	Crystal Structure Of Horse Wild-Type Cyclophilin B		2e-34
1m9e_A	164	X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N-		2e-34
1bck_A	165	Human Cyclophilin A Complexed With 2-Thr Cyclospori		2e-34
5cyh_A	164	Cyclophilin A Complexed With Dipeptide Gly-Pro Leng		2e-34
2xgy_B	173	Complex Of Rabbit Endogenous Lentivirus (Relik)caps		3e-34
3k0o_A	165	Room Temperature Structure Of Cypa Mutant Ser99thr		4e-34
3k0r_A	165	Cryogenic Structure Of Cypa Mutant Arg55lys Length		6e-34
2ck1_A	172	The Structure Of Oxidised Cyclophilin A From S. Man		6e-34
2wlw_A	165	Structure Of The N-Terminal Capsid Domain Of Hiv-2		8e-34
2wfi_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		8e-34
2x25_B	169	Free Acetyl-Cypa Orthorhombic Form Length = 169		9e-34
2x2a_A	165	Free Acetyl-Cypa Trigonal Form Length = 165		9e-34
2x2c_K	165	Acetyl-Cypa:cyclosporine Complex Length = 165		9e-34
4dgd_A	165	Trimcyp Cyclophilin Domain From Macaca Mulatta: H70		1e-33
2wfj_A	179	Atomic Resolution Crystal Structure Of The Ppiase D		1e-33
2r99_A	173	Crystal Structure Of Cyclophilin Abh-Like Domain Of		2e-33
1zmf_A	165	C Domain Of Human Cyclophilin-33(Hcyp33) Length = 1		2e-33
3pmp_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		3e-33
3o7t_A	164	Crystal Structure Of Cyclophilin A From Moniliophth		4e-33
4i9y_A	167	Structure Of The C-terminal Domain Of Nup358 Length		6e-33
2haq_A	172	Crystal Structure Of Cyclophilin A From Leishmania		7e-33
3ich_A	188	Crystal Structure Of Cyclophilin B At 1.2 A Resolut		1e-32
1aws_A	164	Secypa Complexed With Hagpia (Pseudo-Symmetric Mono		1e-32
1cyn_A	178	Cyclophilin B Complexed With [d-(Cholinylester)ser8		1e-32
3bt8_A	172	Crystal Structure Of Mutant Cyclophilin (R147a) Fro		1e-32
2gw2_A	198	Crystal Structure Of The Peptidyl-Prolyl Isomerase		2e-32
3uch_A	174	Crystal Structure Of A Hypotherical Peptidyl-Prolyl		2e-31
2cfe_A	162	The 1.5 A Crystal Structure Of The Malassezia Sympo		3e-31
1z81_A	229	Crystal Structure Of Cyclophilin From Plasmodium Yo		3e-31
2he9_A	192	Structure Of The Peptidylprolyl Isomerase Domain Of		7e-31
1h0p_A	182	Cyclophilin_5 From C. Elegans Length = 182		1e-30
3k2c_A	193	Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isom		4e-30
2c3b_A	172	The Crystal Structure Of Aspergillus Fumigatus Cycl		1e-27
2b71_A	196	Plasmodium Yoelii Cyclophilin-Like Protein Length =		1e-22
2fu0_A	160	Plasmodium Falciparum Cyclophilin Pfe0505w Putative		7e-21
2x7k_A	166	The Crystal Structure Of Ppil1 In Complex With Cycl		7e-21
1xwn_A	174	Solution Structure Of Cyclophilin Like 1(Ppil1) And		8e-21
2k7n_A	203	Solution Structure Of The Ppil1 Bound To A Fragment		8e-21
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		3e-19
2a2n_A	176	Crystal Structure Of The Peptidylprolyl Isomerase D		5e-19
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-18
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		5e-18
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		6e-18
2oju_A	167	X-Ray Structure Of Complex Of Human Cyclophilin J W		2e-17
1xyh_A	161	Crystal Structure Of Recombinant Human Cyclophilin		2e-17
2poe_A	185	Crystal Structure Of Cryptosporidium Parvum Cycloph		6e-15
2hq6_A	185	Structure Of The Cyclophilin_cecyp16-like Domain Of		3e-12
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		2e-11
1zkc_A	197	Crystal Structure Of The Cyclophiln_ring Domain Of		2e-11
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		3e-10
3bo7_A	201	Crystal Structure Of Toxoplasma Gondii Peptidyl-Pro		5e-10
1w74_A	191	X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomer		1e-08
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-07
2ose_A	234	Crystal Structure Of The Mimivirus Cyclophilin Leng		9e-07
3bkp_A	232	Crystal Structure Of The Toxoplasma Gondii Cyclophi		2e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		4e-06
1j2a_A	166	Structure Of E. Coli Cyclophilin B K163t Mutant Len		5e-06
1clh_A	166	Three-Dimensional Solution Structure Of Escherichia		6e-06
2y4t_A	450	Crystal Structure Of The Human Co-Chaperone P58(Ipk		8e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-05
3ieg_A	359	Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A L		2e-05
2y4u_A	450	Crystal Structure Of Human P58(Ipk) In Space Group		3e-05
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		6e-05
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		9e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		8e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		8e-04

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 164/402 (40%), Positives = 226/402 (56%), Gaps = 48/402 (11%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFH 68
           N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G  F 
Sbjct: 15  NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPF- 73
Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                      HRII +FMIQGGD +N 
Sbjct: 74  -------------------------------------------HRIIKKFMIQGGDFSNQ 90
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQFFIT  P PHLDGK+VVF
Sbjct: 91  NGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGS-NTNGSQFFITTVPTPHLDGKHVVF 149
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW 248
           G V +G GVA+ +  VE + +KP   C I   G+L   +DWG+   DGS D +P FPED 
Sbjct: 150 GQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPED- 208
Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
            ++ +   ++++  +   +KN GN +FK      A +KY K +RY++    +        
Sbjct: 209 -ADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAK 267
Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
            +    + +LN+ A +LK   ++ A++ C + L ++P+N KAL+RR +    +  ++Q L
Sbjct: 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQAL 327
Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
            D ++A ++ P D+ I  E+  V+++++   + EK  YA+MF
Sbjct: 328 ADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>pdb|2PLU|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_4120 Length = 186

Iteration: 1
 Score =  175 bits (443), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 103/214 (48%), Positives = 121/214 (56%), Gaps = 45/214 (21%)
Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
           +GN +V+ D+SIG+   GR+ +ELF   VP TAENFRALCTGE G G+ GK L +TGS F
Sbjct: 17  QGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFF 76
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
           HRIIPQFMIQGGD T  +GTGGESIYG  F DENF       Y H               
Sbjct: 77  HRIIPQFMIQGGDFTRGDGTGGESIYGSKFRDENF------VYTH--------------- 115
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
                          D  F         LS+AN G PNTN SQFFIT  PCP LDGK+VV
Sbjct: 116 ---------------DAPF--------LLSMANAG-PNTNGSQFFITTVPCPWLDGKHVV 151
Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSG 221
           FG V +G  V + +    ++N KP  +  IT SG
Sbjct: 152 FGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>pdb|1DYW|A Chain A, Biochemical And Structural Characterization Of A Divergent Loop Cyclophilin From Caenorhabditis Elegans Length = 173

Iteration: 1
 Score =  171 bits (434), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 99/211 (46%), Positives = 117/211 (55%), Gaps = 45/211 (21%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D++IG +  GR+V+EL+  +VPKTA NFRALCTGE G GK GK LHF GS+FHRIIP
Sbjct: 6   VFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIP 65
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
            FMIQGGD T  NGTGGESIYG  F DENF                              
Sbjct: 66  NFMIQGGDFTRGNGTGGESIYGEKFPDENF------------------------------ 95
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
                         K KH   G LS+AN G PNTN SQFF+       LDGK+VVFG V 
Sbjct: 96  --------------KEKHTGPGVLSMANAG-PNTNGSQFFLCTVKTEWLDGKHVVFGRVV 140
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
           +G  V + V    +++ KP+  C I + GQL
Sbjct: 141 EGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>pdb|1QNG|A Chain A, Plasmodium Falciparum Cyclophilin Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/211 (46%), Positives = 116/211 (54%), Gaps = 46/211 (21%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D+SI     GR++ ELF  I P+T ENFRALCTGE   G  GK LH+  S       
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNS------- 57
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHRIIPQFM QGGDITN NG+G
Sbjct: 58  -------------------------------------IFHRIIPQFMCQGGDITNGNGSG 80
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           GESIYG  F DENF +KH   G LS+AN G PNTN+SQFFITL PCP LDGK+VVFG V 
Sbjct: 81  GESIYGRSFTDENFNMKHDQPGLLSMANAG-PNTNSSQFFITLVPCPWLDGKHVVFGKVI 139
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
           +G  V RE+    A++     +  IT+ G+L
Sbjct: 140 EGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>pdb|1QNH|A Chain A, Plasmodium Falciparum Cyclophilin (Double Mutant) Complexed With Cyclosporin A Length = 170

Iteration: 1
 Score =  166 bits (420), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 114/210 (54%), Gaps = 46/210 (21%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D+SI     GR++ ELF  I P+T ENFRALCTGE   G  GK LH+  S       
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEK-IGSRGKNLHYKNS------- 57
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHRIIPQFM QGGDITN NG+G
Sbjct: 58  -------------------------------------IFHRIIPQFMCQGGDITNGNGSG 80
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           GESIYG  F DENF +KH   G LS+AN G PNTN+SQF ITL PCP LDGK+VVFG V 
Sbjct: 81  GESIYGRSFTDENFNMKHDQPGLLSMANAG-PNTNSSQFLITLVPCPWLDGKHVVFGKVI 139
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
           +G  V RE+    A++     +  IT+ G+
Sbjct: 140 EGMNVVREMEKEGAKSGYVKRSVVITDCGE 169

>pdb|2HQJ|A Chain A, Cyclophilin From Leishmania Major Length = 183

Iteration: 1
 Score =  165 bits (417), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 94/218 (43%), Positives = 119/218 (54%), Gaps = 42/218 (19%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+SI  +  GR+V+EL+   VPKTAENFRALCTGE GKG+ GK LH+  S FHR
Sbjct: 7   NPKVFFDISIDNKAAGRIVMELYADTVPKTAENFRALCTGEKGKGRSGKPLHYKSSVFHR 66
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           +IP FMIQGGD T  NGTGGESIYG  F DE+F  K                        
Sbjct: 67  VIPNFMIQGGDFTRGNGTGGESIYGTTFRDESFSGKA----------------------- 103
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                              +H   G LS+AN G PNTN SQFFI  A  P LDGK+VVFG
Sbjct: 104 ------------------GRHTGLGCLSMANAG-PNTNGSQFFICTAATPWLDGKHVVFG 144
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNE 227
            V  G  V ++V  + + + K      +++ G+++ ++
Sbjct: 145 RVIDGLDVVKKVERLGSSSGKTRSRIVVSDCGEVAADK 182

>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A Length = 190

Iteration: 1
 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 93/214 (43%), Positives = 113/214 (52%), Gaps = 53/214 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF DV IG++ VGR+VI LF  +VPKT ENF AL TGE G G       + GS+F     
Sbjct: 18  VFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKF----- 65
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                  HR+I  FMIQGGDIT  +GTG
Sbjct: 66  ---------------------------------------HRVIKDFMIQGGDITTGDGTG 86
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G SIYG  F DENFKLKH   G +S+AN G P+TN SQFFITL     LDGK+VVFG V 
Sbjct: 87  GVSIYGETFPDENFKLKHYGIGWVSMANAG-PDTNGSQFFITLTKPTWLDGKHVVFGKVI 145
Query: 193 QGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSL 225
            G  V   +     + +D+PL  C+I NSG++ +
Sbjct: 146 DGMTVVHSIELQATDGHDRPLTNCSIINSGKIDV 179

>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With Immunosuppressive Drug Cyclosporin A Length = 182

Iteration: 1
 Score =  150 bits (379), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 92/214 (42%), Positives = 110/214 (51%), Gaps = 53/214 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF DV IG++ VGR+VI LF ++VPKT ENF AL TGE G G  G               
Sbjct: 10  VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKG--------------- 54
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHR+I  FMIQGGD T  +GTG
Sbjct: 55  ------------------------------------SIFHRVIKDFMIQGGDFTARDGTG 78
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G SIYG  F DENFKLKH   G +S+AN G P+TN SQFFITL     LDGK+VVFG V 
Sbjct: 79  GMSIYGETFPDENFKLKHYGIGWVSMANAG-PDTNGSQFFITLTKPTWLDGKHVVFGKVL 137
Query: 193 QGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSL 225
            G  V   +     + +D+PL  CTI NSG++ +
Sbjct: 138 DGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDV 171

>pdb|1IST|A Chain A, Crystal Structure Of Yeast Cyclophilin A, Cpr1 Length = 162

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 87/211 (41%), Positives = 107/211 (50%), Gaps = 52/211 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ DV    + +GR+V +L+  IVPKTAENFRALCTGE G G  G               
Sbjct: 4   VYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFGYAGSP------------- 50
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHR+IP FM+QGGD T  NGTG
Sbjct: 51  --------------------------------------FHRVIPDFMLQGGDFTAGNGTG 72
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENFK  H   G LS+AN G PNTN SQFFIT  PCP LDGK+VVFG V 
Sbjct: 73  GKSIYGGKFPDENFKKHHDRPGLLSMANAG-PNTNGSQFFITTVPCPWLDGKHVVFGEVV 131
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            G+ + ++V  + + +        +  SG+L
Sbjct: 132 DGYDIVKKVESLGSPSGATKARIVVAKSGEL 162

>pdb|1QOI|A Chain A, U4U6 SNRNP-Specific Cyclophilin Snucyp-20 Length = 177

Iteration: 1
 Score =  147 bits (371), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 91/215 (42%), Positives = 114/215 (53%), Gaps = 48/215 (22%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N +VF DVSIG ++VGRM IELF  +VPKTAENFR  CTGE+ K   G  + + GS FHR
Sbjct: 10  NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKD--GVPIGYKGSTFHR 67
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           +I  FMIQGGD  N +GTG  SIY   F DENFK                          
Sbjct: 68  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFK-------------------------- 101
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                             L+H   G LS+AN+G P+TN  QFFIT + C  LDGK+VVFG
Sbjct: 102 ------------------LRHSAPGLLSMANSG-PSTNGCQFFITCSKCDWLDGKHVVFG 142
Query: 190 CVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
            +  G  V R++  V    N+KP +   I+  G++
Sbjct: 143 KIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>pdb|1XO7|A Chain A, Crystal Structure Of Cyclophilin From Trypanosoma Cruzi Length = 166

Iteration: 1
 Score =  146 bits (369), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 89/212 (41%), Positives = 113/212 (53%), Gaps = 54/212 (25%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D++IG+E VGR+VI LF + VPKT ENF+ L +GE G G  G               
Sbjct: 8   VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFGYKG--------------- 52
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHR+I  FMIQGGD TNF+GTG
Sbjct: 53  ------------------------------------SIFHRVIRNFMIQGGDFTNFDGTG 76
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F+DEN K+KH F G +S+AN G PN+N SQFF+T AP P LDG++VVFG V 
Sbjct: 77  GKSIYGTRFDDENLKIKH-FVGAVSMANAG-PNSNGSQFFVTTAPTPWLDGRHVVFGKVV 134
Query: 193 QGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
           +G  V ++V   +   NDKP     I + G L
Sbjct: 135 EGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>pdb|3R49|A Chain A, Human Cyclophilin D Complexed With Quinolin-8-Amine Length = 166

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 110/217 (50%), Gaps = 52/217 (23%)
Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
            GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G  G          
Sbjct: 2   SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST-------- 53
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
                                                      FHR+IP FM Q GD TN
Sbjct: 54  -------------------------------------------FHRVIPSFMCQAGDFTN 70
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
            NGTGG+SIYG  F DENF LKH   G LS+AN G PNTN SQFFI       LDGK+VV
Sbjct: 71  HNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVV 129
Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           FG V +G  V +++    +++ +      IT+ GQLS
Sbjct: 130 FGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 166

>pdb|2BIT|X Chain X, Crystal Structure Of Human Cyclophilin D At 1.7 A Resolution Length = 165

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/217 (41%), Positives = 110/217 (50%), Gaps = 52/217 (23%)
Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
            GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G  G          
Sbjct: 1   SGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST-------- 52
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
                                                      FHR+IP FM Q GD TN
Sbjct: 53  -------------------------------------------FHRVIPSFMCQAGDFTN 69
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
            NGTGG+SIYG  F DENF LKH   G LS+AN G PNTN SQFFI       LDGK+VV
Sbjct: 70  HNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVV 128
Query: 188 FGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           FG V +G  V +++    +++ +      IT+ GQLS
Sbjct: 129 FGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>pdb|3QYU|A Chain A, Crystal Structure Of Human Cyclophilin D At 1.54 A Resolution At Room Temperature Length = 164

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 110/216 (50%), Gaps = 52/216 (24%)
Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G  G           
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST--------- 51
Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                     FHR+IP FM Q GD TN 
Sbjct: 52  ------------------------------------------FHRVIPSFMCQAGDFTNH 69
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGG+SIYG  F DENF LKH   G LS+AN G PNTN SQFFI       LDGK+VVF
Sbjct: 70  NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVF 128
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           G V +G  V +++    +++ +      IT+ GQLS
Sbjct: 129 GHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164

>pdb|2Z6W|A Chain A, Crystal Structure Of Human Cyclophilin D In Complex With Cyclosporin A Length = 165

Iteration: 1
 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 90/216 (41%), Positives = 110/216 (50%), Gaps = 52/216 (24%)
Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G  G           
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGST--------- 52
Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                                                     FHR+IP FM Q GD TN 
Sbjct: 53  ------------------------------------------FHRVIPSFMCQAGDFTNH 70
Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGG+SIYG  F DENF LKH   G LS+AN G PNTN SQFFI       LDGK+VVF
Sbjct: 71  NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVF 129
Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           G V +G  V +++    +++ +      IT+ GQLS
Sbjct: 130 GHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>pdb|1C5F|A Chain A, Crystal Structure Of The Cyclophilin-Like Domain From Brugia Malayi Complexed With Cyclosporin A Length = 177

Iteration: 1
 Score =  145 bits (365), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 111/213 (52%), Gaps = 47/213 (22%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFHRII 71
           VFLDV+I     GR+V+EL+  I P+T  NF  LCTG  G GK+ GK LH+ GS F    
Sbjct: 9   VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTF---- 64
Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
                                                   HR+I  FMIQGGD T  +GT
Sbjct: 65  ----------------------------------------HRVIKNFMIQGGDFTKGDGT 84
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
           GGESIYG  F+DE F +KH     +S+AN G PNTN SQFFIT  P PHL+  +VVFG V
Sbjct: 85  GGESIYGGMFDDEEFVMKHDEPFVVSMANKG-PNTNGSQFFITTTPAPHLNNIHVVFGKV 143
Query: 192 RQGFGVAREVSYVEAEN-DKPLVTCTITNSGQL 223
             G  V  ++ Y++  + ++PL    I N G+L
Sbjct: 144 VSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>pdb|2ALF|A Chain A, Crystal Structure Of Human Cypa Mutant K131a Length = 164

Iteration: 1
 Score =  144 bits (363), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 52  -----------------------------------------FHRIIPGFMCQGGDFTRHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 71  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 130 AVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|2X83|B Chain B, Evolutionary Basis Of Hiv Restriction By The Antiretroviral Trimcyp Length = 163

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 106/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T+ N
Sbjct: 52  -----------------------------------------FHRIIPGFMCQGGDFTHHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 71  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 130 KVKEGMNIVEAMKRFGSRNGKTSKKITIADCGQL 163

>pdb|3RDD|A Chain A, Human Cyclophilin A Complexed With An Inhibitor Length = 184

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 22  NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 71
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 72  -----------------------------------------FHRIIPGFMCQGGDFTRHN 90
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 91  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 149
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 150 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183

>pdb|4FRV|A Chain A, Crystal Structure Of Mutated Cyclophilin B That Causes Hyperelastosis Cutis In The American Quarter Horse Length = 185

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 115/222 (51%), Gaps = 53/222 (23%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D+ IG+E +GR+VI LF   VPKT +NF AL TGE G G                  
Sbjct: 15  VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------------------ 56
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                   ++D  F         HR+I  FMIQGGD T  +GTG
Sbjct: 57  ------------------------YKDSKF---------HRVIKDFMIQGGDFTRGDGTG 83
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENFKLKH   G +S+AN G  +TN SQFFIT      LDGK+VVFG V 
Sbjct: 84  GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 142
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
           +G  V R+V   + +  DKPL   TI + G++ + + + +A+
Sbjct: 143 EGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPFAIAK 184

>pdb|2RMA|A Chain A, Crystal Structures Of Cyclophilin A Complexed With Cyclosporin A And N-Methyl-4-[(E)-2-Butenyl]-4,4-Dimethylthreonine Cyclosporin A Length = 165

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|4FRU|A Chain A, Crystal Structure Of Horse Wild-Type Cyclophilin B Length = 185

Iteration: 1
 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/222 (39%), Positives = 115/222 (51%), Gaps = 53/222 (23%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D+ IG+E +GR+VI LF   VPKT +NF AL TGE G G                  
Sbjct: 15  VYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGFG------------------ 56
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                   ++D  F         HR+I  FMIQGGD T  +GTG
Sbjct: 57  ------------------------YKDSKF---------HRVIKDFMIQGGDFTRGDGTG 83
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENFKLKH   G +S+AN G  +TN SQFFIT      LDGK+VVFG V 
Sbjct: 84  GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 142
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
           +G  V R+V   + +  DKPL   TI + G++ + + + +A+
Sbjct: 143 EGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPFAIAK 184

>pdb|1M9E|A Chain A, X-Ray Crystal Structure Of Cyclophilin AHIV-1 Ca N- Terminal Domain (1-146) M-Type H87a Complex. Length = 164

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|1BCK|A Chain A, Human Cyclophilin A Complexed With 2-Thr Cyclosporin Length = 165

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|5CYH|A Chain A, Cyclophilin A Complexed With Dipeptide Gly-Pro Length = 164

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 52  -----------------------------------------FHRIIPGFMCQGGDFTRHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 71  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 130 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 163

>pdb|2XGY|B Chain B, Complex Of Rabbit Endogenous Lentivirus (Relik)capsid With Cyclophilin A Length = 173

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 91/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 11  NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 60
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 61  -----------------------------------------FHRIIPGFMCQGGDFTRHN 79
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 80  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 138
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 139 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 172

>pdb|3K0O|A Chain A, Room Temperature Structure Of Cypa Mutant Ser99thr Length = 165

Iteration: 1
 Score =  142 bits (357), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G L++AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILTMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|3K0R|A Chain A, Cryogenic Structure Of Cypa Mutant Arg55lys Length = 165

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 105/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FH+IIP FM QGGD T  N
Sbjct: 53  -----------------------------------------FHKIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2CK1|A Chain A, The Structure Of Oxidised Cyclophilin A From S. Mansoni Length = 172

Iteration: 1
 Score =  141 bits (356), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 88/211 (41%), Positives = 110/211 (52%), Gaps = 52/211 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D+ IG    GR+V+EL   IVP+TAENFRALCTGE G G                  
Sbjct: 13  VFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG------------------ 54
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                               Y  C              FHR+IPQFM QGGD    +GTG
Sbjct: 55  --------------------YHNC-------------CFHRVIPQFMCQGGDFVKGDGTG 81
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F+DENF+L+H+  G LS+AN+G PNTN SQFFI    C  LDGK+VVFG V 
Sbjct: 82  GKSIYGRKFDDENFQLRHEGFGVLSMANSG-PNTNGSQFFICTTKCDWLDGKHVVFGRVV 140
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            G  V +++  V +++ K      I+  G+L
Sbjct: 141 DGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171

>pdb|2WLW|A Chain A, Structure Of The N-Terminal Capsid Domain Of Hiv-2 Length = 165

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 106/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGG+ T+ N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGNFTHHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2WFI|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G Length = 179

Iteration: 1
 Score =  141 bits (355), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 107/213 (50%), Gaps = 47/213 (22%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSRFHRII 71
            F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+         
Sbjct: 12  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYK-------- 63
Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
                                               S  FHR++  FM+QGGD +  NG 
Sbjct: 64  ------------------------------------SXLFHRVVKDFMVQGGDFSEGNGR 87
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
           GGESIYG  FEDE+F +KH  E  LS+AN G  +TN SQFFIT  P PHLDG +VVFG V
Sbjct: 88  GGESIYGGFFEDESFAVKHNKEFLLSMANRGK-DTNGSQFFITTKPTPHLDGHHVVFGQV 146
Query: 192 RQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
             G  V RE+   + +   KP     I + G+L
Sbjct: 147 ISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2X25|B Chain B, Free Acetyl-Cypa Orthorhombic Form Length = 169

Iteration: 1
 Score =  141 bits (355), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 104/214 (48%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 7   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 56
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 57  -----------------------------------------FHRIIPGFMCQGGDFTRHN 75
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDG +VVFG
Sbjct: 76  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGXHVVFG 134
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 135 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 168

>pdb|2X2A|A Chain A, Free Acetyl-Cypa Trigonal Form Length = 165

Iteration: 1
 Score =  140 bits (354), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 104/214 (48%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDG +VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTKWLDGXHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2X2C|K Chain K, Acetyl-Cypa:cyclosporine Complex Length = 165

Iteration: 1
 Score =  140 bits (354), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 104/214 (48%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGGD T  N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGDFTRHN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDG +VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGXHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|4DGD|A Chain A, Trimcyp Cyclophilin Domain From Macaca Mulatta: H70c Mutant Length = 165

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 106/214 (49%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 3   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 52
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP FM QGG+ T+ N
Sbjct: 53  -----------------------------------------FHRIIPGFMCQGGNFTHCN 71
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 72  GTGGKSIYGEKFEDENFILKHTGPGILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 130
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 131 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 164

>pdb|2WFJ|A Chain A, Atomic Resolution Crystal Structure Of The Ppiase Domain Of Human Cyclophilin G In Complex With Cyclosporin A Length = 179

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 107/213 (50%), Gaps = 47/213 (22%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSRFHRII 71
            F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+         
Sbjct: 12  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYK-------- 63
Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
                                               S  FHR++  FM+QGGD +  NG 
Sbjct: 64  ------------------------------------SCLFHRVVKDFMVQGGDFSEGNGR 87
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
           GGESIYG  FEDE+F +KH  E  LS+AN G  +TN SQFFIT  P PHLDG +VVFG V
Sbjct: 88  GGESIYGGFFEDESFAVKHNKEFLLSMANRGK-DTNGSQFFITTKPTPHLDGHHVVFGQV 146
Query: 192 RQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
             G  V RE+   + +   KP     I + G+L
Sbjct: 147 ISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>pdb|2R99|A Chain A, Crystal Structure Of Cyclophilin Abh-Like Domain Of Human Peptidylprolyl Isomerase E Isoform 1 Length = 173

Iteration: 1
 Score =  140 bits (352), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/213 (41%), Positives = 109/213 (51%), Gaps = 52/213 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  V++D+ IG +  GR+ + L   +VP TAENFR LCT E G G       F GS    
Sbjct: 11  NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSS--- 60
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIPQFM QGGD TN N
Sbjct: 61  -----------------------------------------FHRIIPQFMCQGGDFTNHN 79
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  F+DENF LKH   G LS+AN+G PNTN SQFF+T      LDGK+VVFG
Sbjct: 80  GTGGKSIYGKKFDDENFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFG 138
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
            V +G  V R++    +++ KP     I + G+
Sbjct: 139 EVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 171

>pdb|1ZMF|A Chain A, C Domain Of Human Cyclophilin-33(Hcyp33) Length = 165

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 87/210 (41%), Positives = 108/210 (51%), Gaps = 52/210 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V++D+ IG +  GR+ + L   +VP TAENFR LCT E G G       F GS       
Sbjct: 6   VYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSS------ 52
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHRIIPQFM QGGD TN NGTG
Sbjct: 53  --------------------------------------FHRIIPQFMCQGGDFTNHNGTG 74
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F+DENF LKH   G LS+AN+G PNTN SQFF+T      LDGK+VVFG V 
Sbjct: 75  GKSIYGKKFDDENFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFGEVT 133
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
           +G  V R++    +++ KP     I + G+
Sbjct: 134 EGLDVLRQIEAQGSKDGKPKQKVIIADCGE 163

>pdb|3PMP|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa In Complex With Cyclosporin A Length = 164

Iteration: 1
 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 84/212 (39%), Positives = 111/212 (52%), Gaps = 52/212 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF ++SI ++  GR+V +L+   VPKTA+NFR L TG++G G                  
Sbjct: 5   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG------------------ 46
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                   ++D           FHR+IPQFM+QGGD T  NGTG
Sbjct: 47  ------------------------YKD---------SIFHRVIPQFMLQGGDFTRHNGTG 73
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENF++KH   G LS+AN G  NTN SQFFIT  P   LDGK+VVFG V 
Sbjct: 74  GKSIYGEKFADENFQVKHTKPGLLSMANAG-ANTNGSQFFITTVPTSWLDGKHVVFGEVI 132
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           +G  + R+V    + + K   T  IT+ G ++
Sbjct: 133 EGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164

>pdb|3O7T|A Chain A, Crystal Structure Of Cyclophilin A From Moniliophthora Perniciosa Length = 164

Iteration: 1
 Score =  139 bits (349), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 84/211 (39%), Positives = 110/211 (52%), Gaps = 52/211 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF ++SI ++  GR+V +L+   VPKTA+NFR L TG++G G                  
Sbjct: 6   VFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG------------------ 47
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                   ++D           FHR+IPQFM+QGGD T  NGTG
Sbjct: 48  ------------------------YKD---------SIFHRVIPQFMLQGGDFTRHNGTG 74
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENF++KH   G LS+AN G  NTN SQFFIT  P   LDGK+VVFG V 
Sbjct: 75  GKSIYGEKFADENFQVKHTKPGLLSMANAG-ANTNGSQFFITTVPTSWLDGKHVVFGEVI 133
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
           +G  + R+V    + + K   T  IT+ G +
Sbjct: 134 EGLDIVRKVEGKGSASGKTNATIKITDCGTV 164

>pdb|4I9Y|A Chain A, Structure Of The C-terminal Domain Of Nup358 Length = 167

Iteration: 1
 Score =  138 bits (347), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 109/214 (50%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N +VF DV    E +GR+ +ELF +IVP+TAENFRALCT                     
Sbjct: 6   NPVVFFDVCADGEPLGRITMELFSNIVPRTAENFRALCT--------------------- 44
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                              GE  +G       FK    +  FHR+IP F+ QGGDIT  +
Sbjct: 45  -------------------GEKGFG-------FK----NSIFHRVIPDFVCQGGDITKHD 74
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF +KH   G LS+AN G  NTNNSQF ITL    HLD K+VVFG
Sbjct: 75  GTGGQSIYGDKFEDENFDVKHTGPGLLSMANQGQ-NTNNSQFVITLKKAEHLDFKHVVFG 133
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V+ G    +++    +         TIT  GQ+
Sbjct: 134 FVKDGMDTVKKIESFGSPKGSVCRRITITECGQI 167

>pdb|2HAQ|A Chain A, Crystal Structure Of Cyclophilin A From Leishmania Donovani Length = 172

Iteration: 1
 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 106/212 (50%), Gaps = 54/212 (25%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ DV I  E +GR+ I LF    P T ENFR LCTGE                      
Sbjct: 14  VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGE---------------------- 51
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                               +G  ++D           FHR+I  FMIQGGD TNF+GTG
Sbjct: 52  --------------------HGFGYKD---------SIFHRVIQNFMIQGGDFTNFDGTG 82
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DEN  +KH F G LS+AN G PNTN SQFFIT AP P LDG++VVFG V 
Sbjct: 83  GKSIYGEKFADENLNVKH-FVGALSMANAG-PNTNGSQFFITTAPTPWLDGRHVVFGKVL 140
Query: 193 QGFGVAREVSYVEA-ENDKPLVTCTITNSGQL 223
            G  V   +   +   +D+P+    I  SG+L
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|3ICH|A Chain A, Crystal Structure Of Cyclophilin B At 1.2 A Resolution Length = 188

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 113/222 (50%), Gaps = 53/222 (23%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D+ IG+E VGR++  LF   VPKT +NF AL TGE       K   +  S+F     
Sbjct: 18  VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-------KGFGYKNSKF----- 65
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                  HR+I  FMIQGGD T  +GTG
Sbjct: 66  ---------------------------------------HRVIKDFMIQGGDFTRGDGTG 86
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENFKLKH   G +S+AN G  +TN SQFFIT      LDGK+VVFG V 
Sbjct: 87  GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 145
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
           +G  V R+V   + ++ DKPL    I + G++ + + + +A+
Sbjct: 146 EGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAK 187

>pdb|1AWS|A Chain A, Secypa Complexed With Hagpia (Pseudo-Symmetric Monomer) Length = 164

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 90/214 (42%), Positives = 102/214 (47%), Gaps = 52/214 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G  G            
Sbjct: 2   NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFGYKGSC---------- 51
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIP F  QGGD T  N
Sbjct: 52  -----------------------------------------FHRIIPGFXCQGGDFTRHN 70
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  FEDENF LKH   G LS AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 71  GTGGKSIYGEKFEDENFILKHTGPGILSXANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 129
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +        + N K     TI + GQL
Sbjct: 130 KVKEGXNIVEAXERFGSRNGKTSKKITIADCGQL 163

>pdb|1CYN|A Chain A, Cyclophilin B Complexed With [d-(Cholinylester)ser8]-Cyclosporin Length = 178

Iteration: 1
 Score =  137 bits (345), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/222 (38%), Positives = 113/222 (50%), Gaps = 53/222 (23%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D+ IG+E VGR++  LF   VPKT +NF AL TGE       K   +  S+F     
Sbjct: 8   VYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGE-------KGFGYKNSKF----- 55
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                  HR+I  FMIQGGD T  +GTG
Sbjct: 56  ---------------------------------------HRVIKDFMIQGGDFTRGDGTG 76
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENFKLKH   G +S+AN G  +TN SQFFIT      LDGK+VVFG V 
Sbjct: 77  GKSIYGERFPDENFKLKHYGPGWVSMANAGK-DTNGSQFFITTVKTAWLDGKHVVFGKVL 135
Query: 193 QGFGVAREVSYVEAEN-DKPLVTCTITNSGQLSLNEDWGVAE 233
           +G  V R+V   + ++ DKPL    I + G++ + + + +A+
Sbjct: 136 EGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAK 177

>pdb|3BT8|A Chain A, Crystal Structure Of Mutant Cyclophilin (R147a) From Leishmania Donovani Length = 172

Iteration: 1
 Score =  137 bits (344), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/212 (41%), Positives = 105/212 (49%), Gaps = 54/212 (25%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ DV I  E +GR+ I LF    P T ENFR LCTGE                      
Sbjct: 14  VYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGE---------------------- 51
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                               +G  ++D           FHR+I  FMIQGGD TNF+GTG
Sbjct: 52  --------------------HGFGYKD---------SIFHRVIQNFMIQGGDFTNFDGTG 82
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DEN  +KH F G LS+AN G PNTN SQFFIT AP P LDG +VVFG V 
Sbjct: 83  GKSIYGEKFADENLNVKH-FVGALSMANAG-PNTNGSQFFITTAPTPWLDGAHVVFGKVL 140
Query: 193 QGFGVAREVSYVEA-ENDKPLVTCTITNSGQL 223
            G  V   +   +   +D+P+    I  SG+L
Sbjct: 141 DGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>pdb|2GW2|A Chain A, Crystal Structure Of The Peptidyl-Prolyl Isomerase Domain Of Human Cyclophilin G Length = 198

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 85/213 (39%), Positives = 105/213 (49%), Gaps = 47/213 (22%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGSRFHRII 71
            F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+    FHR++
Sbjct: 29  CFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVV 88
Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
             FM+QGGD +  NG GGESIYG  FEDE+F                             
Sbjct: 89  KDFMVQGGDFSEGNGRGGESIYGGFFEDESF----------------------------- 119
Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
                           +KH     LS+AN G  +TN SQFFIT  P PHLDG +VVFG V
Sbjct: 120 ---------------AVKHNAAFLLSMANRGK-DTNGSQFFITTKPTPHLDGHHVVFGQV 163
Query: 192 RQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL 223
             G  V RE+   + +   KP     I + G+L
Sbjct: 164 ISGQEVVREIENQKTDAASKPFAEVRILSCGEL 196

>pdb|3UCH|A Chain A, Crystal Structure Of A Hypotherical Peptidyl-Prolyl Cis-Trans Isomerase E (Ppie) From Homo Sapiens At 2.50 A Resolution Length = 174

Iteration: 1
 Score =  133 bits (334), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 105/213 (49%), Gaps = 52/213 (24%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  V+ D+ IG +  GR+   L   +VP TAENFR LCT E G G       F GS    
Sbjct: 12  NPQVYXDIKIGNKPAGRIQXLLRSDVVPXTAENFRCLCTHEKGFG-------FKGSS--- 61
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIPQF  QGGD TN N
Sbjct: 62  -----------------------------------------FHRIIPQFXCQGGDFTNHN 80
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  F+DENF LKH   G LS AN+G PNTN SQFF+T      LDGK+VVFG
Sbjct: 81  GTGGKSIYGKKFDDENFILKHTGPGLLSXANSG-PNTNGSQFFLTCDKTDWLDGKHVVFG 139
Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
            V +G  V R++    +++ KP     I + G+
Sbjct: 140 EVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 172

>pdb|2CFE|A Chain A, The 1.5 A Crystal Structure Of The Malassezia Sympodialis Mala S 6 Allergen, A Member Of The Cyclophilin Pan- Allergen Family Length = 162

Iteration: 1
 Score =  132 bits (333), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 83/209 (39%), Positives = 100/209 (47%), Gaps = 52/209 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D++     +G +  +LF  +VPKTA NFRALCTGE G G  G               
Sbjct: 4   VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFGYAG--------------- 48
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                +FHR+IP FM+QGGD T  NGTG
Sbjct: 49  ------------------------------------SHFHRVIPDFMLQGGDFTAGNGTG 72
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENF+LKH   G LS+AN G PNTN SQFFIT      LDGK+VVFG V 
Sbjct: 73  GKSIYGAKFADENFQLKHNKPGLLSMANAG-PNTNGSQFFITTVVTSWLDGKHVVFGEVI 131
Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSG 221
            G  V + +    + + KP     I   G
Sbjct: 132 DGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>pdb|1Z81|A Chain A, Crystal Structure Of Cyclophilin From Plasmodium Yoelii Length = 229

Iteration: 1
 Score =  132 bits (332), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/180 (42%), Positives = 96/180 (53%), Gaps = 47/180 (26%)
Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N +VF+D+++G   +G+   ELF++IVPKT+ENFR  CTGEY                  
Sbjct: 59  NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEY------------------ 100
Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                       +  N  +   +  FHR+I +FMIQGGD  N N
Sbjct: 101 ----------------------------KVNNLPVGYKNTIFHRVIKEFMIQGGDFINHN 132
Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           G+G  SIYG  F+DENF +KH  EG LS+AN+G PNTN  QFFIT   C  LDGKNVVFG
Sbjct: 133 GSGSLSIYGEKFDDENFDIKHDKEGLLSMANSG-PNTNGCQFFITTKKCEWLDGKNVVFG 191

>pdb|2HE9|A Chain A, Structure Of The Peptidylprolyl Isomerase Domain Of The Human Nk-Tumour Recognition Protein Length = 192

Iteration: 1
 Score =  131 bits (329), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 83/212 (39%), Positives = 106/212 (50%), Gaps = 47/212 (22%)
Query: 15  LDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFHRIIPQ 73
            D+ I  E VGR++ +LF  I PKT +NF  LC+GE G GK  GK L + GS F      
Sbjct: 24  FDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTF------ 77
Query: 74  FMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGG 133
                                                 HR++  FMIQGGD +  NG GG
Sbjct: 78  --------------------------------------HRVVKNFMIQGGDFSEGNGKGG 99
Query: 134 ESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQ 193
           ESIYG  F+DENF LKH     LS+AN G  +TN SQFFIT  P PHLDG +VVFG V  
Sbjct: 100 ESIYGGYFKDENFILKHDRAFLLSMANRGK-HTNGSQFFITTKPAPHLDGVHVVFGLVIS 158
Query: 194 GFGVAREVSYVEAE-NDKPLVTCTITNSGQLS 224
           GF V  ++  ++ +   +P     + + G L+
Sbjct: 159 GFEVIEQIENLKTDAASRPYADVRVIDCGVLA 190

>pdb|1H0P|A Chain A, Cyclophilin_5 From C. Elegans Length = 182

Iteration: 1
 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/220 (37%), Positives = 107/220 (48%), Gaps = 53/220 (24%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D+ IG + +GR+VI LF   VPKTA NF  L     G+G       + GS+F     
Sbjct: 9   VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG-------YPGSKF----- 56
Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                  HR+I  FMIQGGD T  +GTG
Sbjct: 57  ---------------------------------------HRVIADFMIQGGDFTRGDGTG 77
Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G SIYG  F DENFKLKH   G LS+AN G  +TN SQFFIT    P LDG++VVFG + 
Sbjct: 78  GRSIYGEKFADENFKLKHYGAGWLSMANAGA-DTNGSQFFITTVKTPWLDGRHVVFGKIL 136
Query: 193 QGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGV 231
           +G  V R++   E    D+P     I  SG ++++  + V
Sbjct: 137 EGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSV 176

>pdb|3K2C|A Chain A, Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Encephalitozoon Cuniculi At 1.9 A Resolution Length = 193

Iteration: 1
 Score =  129 bits (323), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 83/205 (40%), Positives = 103/205 (50%), Gaps = 52/205 (25%)
Query: 4   SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFT 63
           S+ KE +  V+ DV   EE +GR+V++L   IVPKTA+NFR LC    G+G  G      
Sbjct: 21  SMAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEGYKGST---- 76
Query: 64  GSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGG 123
                                                          FHRIIP FM+QGG
Sbjct: 77  -----------------------------------------------FHRIIPGFMVQGG 89
Query: 124 DITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDG 183
           D T  NGTGG SIYG  F DENF+LKH  EG LS+AN G  +TN SQFFITL     LD 
Sbjct: 90  DYTAHNGTGGRSIYGEKFPDENFELKHTKEGILSMANCG-AHTNGSQFFITLGKTQWLDE 148
Query: 184 KNVVFGCVRQGFGVAREVSYVEAEN 208
           K+VVFG V +G  V  +++   +E+
Sbjct: 149 KHVVFGEVVEGMDVVHKIAKYGSES 173

>pdb|2C3B|A Chain A, The Crystal Structure Of Aspergillus Fumigatus Cyclophilin Reveals 3d Domain Swapping Of A Central Element Length = 172

Iteration: 1
 Score =  120 bits (302), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 89/224 (39%), Positives = 104/224 (46%), Gaps = 69/224 (30%)
Query: 13  VFLDV-----SIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
           VF DV        E KVGR+V  LF   VPKTA+NFR LC    G+G       +  S F
Sbjct: 5   VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTF 57
Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
           HRIIP FMIQGGD T  NGTGG SIYG  F DEN                          
Sbjct: 58  HRIIPNFMIQGGDFTRGNGTGGRSIYGDKFADEN-------------------------- 91
Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
                             F  KH  +G LS+AN G PNTN SQFFIT A    LDGK+VV
Sbjct: 92  ------------------FSRKHDKKGILSMANAG-PNTNGSQFFITTAVTSWLDGKHVV 132
Query: 188 FGCV--RQGFGVAREVSYVEA------ENDKPLVTCTITNSGQL 223
           FG V   + + V +E+  + +       N +P     I N G+L
Sbjct: 133 FGEVADEKSYSVVKEIEALGSSSGSVRSNTRP----KIVNCGEL 172

>pdb|2B71|A Chain A, Plasmodium Yoelii Cyclophilin-Like Protein Length = 196

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/104 (53%), Positives = 71/104 (68%), Gaps = 4/104 (3%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNS 169
           FHR+IP F+IQGGD T   G GG+SIYG  FEDE N +LKH   G LS++N G PNTN+S
Sbjct: 80  FHRVIPNFVIQGGDPTG-TGKGGKSIYGEYFEDEINKELKHTGAGILSMSNNG-PNTNSS 137
Query: 170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVE-AENDKPL 212
           QFFITLAP PHLDGK+ +F  V +       ++ V+    +KP+
Sbjct: 138 QFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPI 181

>pdb|2FU0|A Chain A, Plasmodium Falciparum Cyclophilin Pfe0505w Putative Cyclosporin- Binding Domain Length = 160

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 76/127 (59%), Gaps = 9/127 (7%)
Query: 100 ENFKLKVISQY-----FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFK-LKHKFE 153
           +NF +  I+ Y     FHR+I  FM+Q GD +  +GTGGESI+G  FEDE F  L H   
Sbjct: 31  QNFSVHSINGYYNNCIFHRVIKHFMVQTGDPSG-DGTGGESIWGNEFEDEFFDHLNHSKP 89
Query: 154 GQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAEN-DKPL 212
             +S+AN G PNTN SQFFIT  PCP LD K+ VFG V QG  +  ++  V  +  DKPL
Sbjct: 90  FMVSMANCG-PNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPL 148
Query: 213 VTCTITN 219
               I N
Sbjct: 149 EDIKILN 155

>pdb|2X7K|A Chain A, The Crystal Structure Of Ppil1 In Complex With Cyclosporine A Suggests A Binding Mode For Skip Length = 166

Iteration: 1
 Score = 98.2 bits (243), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 91/193 (47%), Gaps = 56/193 (29%)
Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
           E  +G +V+EL+    PKT +NF           +L +  ++ G++FHRII  FMIQGGD
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81  ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
            T   G GG SIYG  FEDE           H                            
Sbjct: 67  PTG-TGRGGASIYGKQFEDE----------LHP--------------------------- 88
Query: 141 FEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVARE 200
                  LK    G L++AN G P+TN SQFF+TLAP   LDGK+ +FG V QG G+   
Sbjct: 89  ------DLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 201 VSYVEAEN-DKPL 212
           V  VE  + D+P+
Sbjct: 142 VGMVETNSQDRPV 154

>pdb|1XWN|A Chain A, Solution Structure Of Cyclophilin Like 1(Ppil1) And Insights Into Its Interaction With Skip Length = 174

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 91/193 (47%), Gaps = 56/193 (29%)
Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
           E  +G +V+EL+    PKT +NF           +L +  ++ G++FHRII  FMIQGGD
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81  ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
            T   G GG SIYG  FEDE           H                            
Sbjct: 67  PTG-TGRGGASIYGKQFEDE----------LHP--------------------------- 88
Query: 141 FEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVARE 200
                  LK    G L++AN G P+TN SQFF+TLAP   LDGK+ +FG V QG G+   
Sbjct: 89  ------DLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 201 VSYVEAEN-DKPL 212
           V  VE  + D+P+
Sbjct: 142 VGMVETNSQDRPV 154

>pdb|2K7N|A Chain A, Solution Structure Of The Ppil1 Bound To A Fragment Of Skip Length = 203

Iteration: 1
 Score = 98.2 bits (243), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 71/201 (35%), Positives = 93/201 (46%), Gaps = 56/201 (27%)
Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
           E  +G +V+EL+    PKT +NF           +L +  ++ G++FHRII  FMIQGGD
Sbjct: 17  ETSMGIIVLELYWKHAPKTCKNF----------AELARRGYYNGTKFHRIIKDFMIQGGD 66
Query: 81  ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
            T   G GG SIYG  FEDE           H                            
Sbjct: 67  PTG-TGRGGASIYGKQFEDE----------LHP--------------------------- 88
Query: 141 FEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVARE 200
                  LK    G L++AN G P+TN SQFF+TLAP   LDGK+ +FG V QG G+   
Sbjct: 89  ------DLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNR 141
Query: 201 VSYVEAEN-DKPLVTCTITNS 220
           V  VE  + D+P+    I  +
Sbjct: 142 VGMVETNSQDRPVDDVKIIKA 162

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 56/166 (33%), Positives = 91/166 (54%), Gaps = 6/166 (3%)
Query: 246 EDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 305
           E W+ N E  +L Q       +K  G  YFK  +   A  +YKK V +++ Y  S S  +
Sbjct: 134 ESWEMNSEE-KLEQS----TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEE 187
Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
            +  ++   A+ LN+A   LK +A+  AI  C+  L ++ NN K LFRRG A +++N+FE
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFE 247
Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
               D+++ L L PN++    ++A  ++++R  L  EK  YA MF+
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|2A2N|A Chain A, Crystal Structure Of The Peptidylprolyl Isomerase Domain Of Human Ppwd1 Length = 176

Iteration: 1
 Score = 92.4 bits (228), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 57/112 (50%), Positives = 69/112 (61%), Gaps = 5/112 (4%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNS 169
           FHRII  FMIQ GD T   G GGESI+G  FEDE +  L+H     LS+AN G  NTN S
Sbjct: 63  FHRIIKGFMIQTGDPTG-TGMGGESIWGGEFEDEFHSTLRHDRPYTLSMANAGS-NTNGS 120
Query: 170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA--ENDKPLVTCTITN 219
           QFFIT+ P P LD K+ VFG V +G  V + +S V+   + DKP    +I N
Sbjct: 121 QFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 55/166 (33%), Positives = 90/166 (54%), Gaps = 6/166 (3%)
Query: 246 EDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 305
           E W+ N E  +L Q       +K  G  YFK  +   A  +YKK V +++ Y  S S  +
Sbjct: 134 ESWEXNSEE-KLEQS----TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEE 187
Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
            +  ++   A+ LN+A   LK +A+  AI  C+  L ++ NN K L RRG A +++N+FE
Sbjct: 188 AQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE 247
Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
               D+++ L L PN++    ++A  ++++R  L  EK  YA MF+
Sbjct: 248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 89.0 bits (219), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
           +K  G  YFK  +   A  +Y K V +++      S+ + K   S+  AA LN+A   LK
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
            + Y +A+  CD  L ++  N K L+RRG AQ+ MN FE    D+E+ L++ P ++    
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 387 EIAFVRKQMRHHLNLEKMTYARMFQ 411
           +I+  +K+ + H   ++  YA MF+
Sbjct: 390 QISMCQKKAKEHNERDRRIYANMFK 414

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score = 88.6 bits (218), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 48/145 (33%), Positives = 78/145 (53%), Gaps = 1/145 (0%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
           +K  G  YFK  +   A  +Y K V +++      S+ + K   S+  AA LN+A   LK
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEM-EYGLSEKESKASESFLLAAFLNLAMCYLK 329
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
            + Y +A+  CD  L ++  N K L+RRG AQ+ MN FE    D+E+ L++ P ++    
Sbjct: 330 LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARL 389
Query: 387 EIAFVRKQMRHHLNLEKMTYARMFQ 411
           +I   +K+ + H   ++ TYA MF+
Sbjct: 390 QIFMCQKKAKEHNERDRRTYANMFK 414

>pdb|2OJU|A Chain A, X-Ray Structure Of Complex Of Human Cyclophilin J With Cyclosporin A Length = 167

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 15  VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 64
Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG SI+G  FEDE       S+Y                                 
Sbjct: 65  -TGRGGNSIWGKKFEDE------YSEY--------------------------------- 84
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREV 201
               LKH   G +S+AN G PNTN SQFFIT    PHLD K  VFG V  G     E+
Sbjct: 85  ----LKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL 137

>pdb|1XYH|A Chain A, Crystal Structure Of Recombinant Human Cyclophilin J Length = 161

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 76/178 (42%), Gaps = 55/178 (30%)
Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58
Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG SI+G  FEDE       S+Y                                 
Sbjct: 59  -TGRGGNSIWGKKFEDE------YSEY--------------------------------- 78
Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREV 201
               LKH   G +S+AN G PNTN SQFFIT    PHLD K  VFG V  G     E+
Sbjct: 79  ----LKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDEL 131

>pdb|2POE|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cyclophilin Type Peptidyl-Prolyl Cis-Trans Isomerase Cgd2_1660 Length = 185

Iteration: 1
 Score = 78.6 bits (192), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/89 (51%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTG---HPNT 166
           FH+ I  F+IQGGD T   G GGESIYG  F+DE + +LK+   G LS+A+ G    PNT
Sbjct: 58  FHKNIKGFIIQGGDPTG-TGKGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNT 116
Query: 167 NNSQFFITLAPCPHLDGKNVVFGCVRQGF 195
           N SQFFIT +  P L+G+ V+FG +  GF
Sbjct: 117 NGSQFFITYSSLPQLNGEYVIFGKLIDGF 145

>pdb|2HQ6|A Chain A, Structure Of The Cyclophilin_cecyp16-like Domain Of The Serologically Defined Colon Cancer Antigen 10 From Homo Sapiens Length = 185

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNS 169
           FHR++P F++QGGD T   G+GGESIYG  F+DE + +L+    G +++AN G  + N S
Sbjct: 66  FHRVVPGFIVQGGDPTG-TGSGGESIYGAPFKDEFHSRLRFNRRGLVAMANAGS-HDNGS 123
Query: 170 QFFITLAPCPHLDGKNVVFGCV 191
           QFF TL     L+ K+ +FG V
Sbjct: 124 QFFFTLGRADELNNKHTIFGKV 145

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 43/146 (29%), Positives = 73/146 (50%), Gaps = 3/146 (2%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYI--KWYNQSQSKTQQKHFRSYYTAALLNMAAVQL 325
           K  GN  FK  ++ +A ++Y+ A+ Y+   +  Q   K Q     +      LN+AA  +
Sbjct: 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMAL-AVKNPCHLNIAACLI 241
Query: 326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
           K K Y  AI  C+ +L  E  N KALFRRG+A+  +   +    D+ +A    P+D+ I 
Sbjct: 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIR 301
Query: 386 KEIAFVRKQMRHHLNLEKMTYARMFQ 411
           +E+  + +Q +     +K  Y  +F+
Sbjct: 302 RELRALAEQEKALYQKQKEMYKGIFK 327

>pdb|1ZKC|A Chain A, Crystal Structure Of The Cyclophiln_ring Domain Of Human Peptidylprolyl Isomerase (Cyclophilin)-Like 2 Isoform B Length = 197

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 66/189 (34%), Positives = 85/189 (44%), Gaps = 57/189 (30%)
Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + +EL   + PKT ENF  LC   Y          + G+ FHR I  F+IQGGD T  
Sbjct: 29  GDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG- 77
Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
            GTGGES +G  F+DE                                    + P     
Sbjct: 78  TGTGGESYWGKPFKDE------------------------------------FRP----- 96
Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYV 204
              L H   G LS+AN+G PN+N SQFFIT   C +LD K+ +FG V  GF V   +  V
Sbjct: 97  --NLSHTGRGILSMANSG-PNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 153
Query: 205 EAE--NDKP 211
           E++   D+P
Sbjct: 154 ESDPKTDRP 162

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 73/147 (49%)
Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
           IK  GNE+FK N +++A  KYK+A+ +     +   +      ++   +  LN+A    K
Sbjct: 41  IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK 100
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
            K Y +AI+    +L ++ NNVKAL++ G A +     E+  ++  +A  L PN+  I  
Sbjct: 101 NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN 160
Query: 387 EIAFVRKQMRHHLNLEKMTYARMFQNG 413
                  +++     +K+T+  MF  G
Sbjct: 161 SYELCVNKLKEARKKDKLTFGGMFDKG 187

>pdb|3BO7|A Chain A, Crystal Structure Of Toxoplasma Gondii Peptidyl-Prolyl Cis-Trans Isomerase, 541.M00136 Length = 201

Iteration: 1
 Score = 62.4 bits (150), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 58/183 (31%), Positives = 81/183 (44%), Gaps = 45/183 (24%)
Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + IEL   + P+  ++F  LC  +Y          F  + FHR I  FMIQGG     
Sbjct: 16  GSLNIELHADMAPRACDSFLRLCAVKY----------FDDTIFHRCIRNFMIQGGR---- 61
Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
                  +  P       K K + Q      P+       I+ F G       G  FEDE
Sbjct: 62  -----AELRQPS------KKKEVQQS-----PR------SISGFPG-------GAPFEDE 92
Query: 145 -NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
            + +L H+  G LS+AN G  ++N S+FFIT   C HL+ K+ +FG V  G  V R+   
Sbjct: 93  FDNRLVHQGIGVLSMANDG-KHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEK 151
Query: 204 VEA 206
           +E 
Sbjct: 152 LET 154

>pdb|1W74|A Chain A, X-Ray Structure Of Peptidyl-Prolyl Cis-Trans Isomerase A, Ppia, Rv0009, From Mycobacterium Tuberculosis. Length = 191

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/167 (31%), Positives = 69/167 (41%), Gaps = 43/167 (25%)
Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + I LF +  PKT  NF  L  G                              D +  
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTK----------------------------DYSTQ 64
Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
           N +GG S  GP ++            FHR+I  FMIQGGD T     G    +   F  E
Sbjct: 65  NASGGPS--GPFYD---------GAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPE 113
Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
              L+      L++AN G P TN SQFFIT+   PHL+ ++ +FG V
Sbjct: 114 ---LQFDKPYLLAMANAG-PGTNGSQFFITVGKTPHLNRRHTIFGEV 156

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 16/134 (11%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 321
           +     KN GN Y+K       Q  Y+KA+ Y +         +         +A  N+ 
Sbjct: 7   NSAEAWKNLGNAYYK-------QGDYQKAIEYYQ---------KALELDPNNASAWYNLG 50
Query: 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
               K   Y++AI      L ++PNN KA +RRG A     ++++ ++DY++AL+L PN+
Sbjct: 51  NAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNN 110
Query: 382 QQILKEIAFVRKQM 395
            +  + +   +++ 
Sbjct: 111 AKAKQNLGNAKQKQ 124

>pdb|2OSE|A Chain A, Crystal Structure Of The Mimivirus Cyclophilin Length = 234

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 15/102 (14%)
Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEY------GKGKLGKALH----F 62
           V++D+ +  E +GR+ I+LF+   P   ENF  L  G+       G GK     H    +
Sbjct: 17  VYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTY 76
Query: 63  TGSRFHRIIPQFMIQGGDITNFNGTGGESIY-----GPCFED 99
            G +FH ++    I  GDI N NG+   ++Y      P F D
Sbjct: 77  EGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVFGD 118

>pdb|3BKP|A Chain A, Crystal Structure Of The Toxoplasma Gondii Cyclophilin, 49.m03261 Length = 232

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 15/100 (15%)
Query: 107 ISQYFHRIIPQFMIQGGDITNFNGTGGESIY-GPCFEDENF-KLKHKFEGQLSLANTGHP 164
           ++  FHR++  F++QGGD T     G ++ + G  F+ E   +LK ++ G + +AN G  
Sbjct: 59  VNTIFHRVVKDFIVQGGDPTGTGRGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGRS 118
Query: 165 N-------------TNNSQFFITLAPCPHLDGKNVVFGCV 191
           +             TN +QFFITLA    L+    +FG V
Sbjct: 119 SKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKV 158

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 18/117 (15%)
Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL-NMAAVQLK 326
           KN GNEYFK      A R Y +AV+                 R    A L  N AA   K
Sbjct: 17  KNKGNEYFKKGDYPTAMRHYNEAVK-----------------RDPENAILYSNRAACLTK 59
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
              ++RA++ CD  + ++   +K   R+    V+M  + +  + YE AL + P++++
Sbjct: 60  LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEE 116

>pdb|1J2A|A Chain A, Structure Of E. Coli Cyclophilin B K163t Mutant Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 54/121 (44%), Gaps = 16/121 (13%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
           FHR+IP FMIQGG    F     +    P  ++E         G +++A T   ++  SQ
Sbjct: 46  FHRVIPGFMIQGG---GFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQ 102
Query: 171 FFITLAPCPHLDGKN-----VVFGCVRQGFGVAREVSYVEAEN--------DKPLVTCTI 217
           FFI +A    LD         VFG V +G  VA ++S V   +         KP+V  + 
Sbjct: 103 FFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSA 162
Query: 218 T 218
           T
Sbjct: 163 T 163

>pdb|1CLH|A Chain A, Three-Dimensional Solution Structure Of Escherichia Coli Periplasmic Cyclophilin Length = 166

Iteration: 1
 Score = 48.9 bits (115), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 8/106 (7%)
Query: 111 FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ 170
           FHR+IP FMIQGG    F     +    P  ++E         G +++A T   ++  SQ
Sbjct: 46  FHRVIPGFMIQGG---GFTEQMQQKKPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQ 102
Query: 171 FFITLAPCPHLDGKN-----VVFGCVRQGFGVAREVSYVEAENDKP 211
           FFI +A    LD         VFG V +G  VA ++S V   +  P
Sbjct: 103 FFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGP 148

>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk) Length = 450

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 33/52 (63%)
Query: 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
           AI +C ++L MEP+NV AL  R  A +    +++ +QDYE A +   NDQQI
Sbjct: 314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQI 365

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/165 (21%), Positives = 72/165 (43%), Gaps = 3/165 (1%)
Query: 251 NPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKH 308
           +P  +   +    +  I   GN  ++   + +A  KY  A+  +K     +     +   
Sbjct: 1   DPWAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQ 60
Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
                T  LLN    +L  + Y   ++ C  IL    +NVKA F+RG+A  ++ N ++  
Sbjct: 61  LDQQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQ 120
Query: 369 QDYEQALDLLPNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQN 412
            D+ + L+L P    ++ +E+  +  ++R     +K  +  +F +
Sbjct: 121 ADFAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRGIFSH 165

>pdb|3IEG|A Chain A, Crystal Structure Of P58(Ipk) Tpr Domain At 2.5 A Length = 359

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
           AI +C ++L  EP+NV AL  R  A +    +++ +QDYE A +   NDQQI
Sbjct: 291 AIRICSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYEAAQEHNENDQQI 342

>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312 Length = 450

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
           AI +C ++L  EP+NV AL  R  A +    +++ +QDYE A +   NDQQI
Sbjct: 314 AIRVCSEVLQXEPDNVNALKDRAEAYLIEEXYDEAIQDYETAQEHNENDQQI 365

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/119 (25%), Positives = 53/119 (44%), Gaps = 2/119 (1%)
Query: 263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK--WYNQSQSKTQQKHFRSYYTAALLNM 320
            +  I   GN  ++   + +A  KY  A+  +K     +     +        T  LLN 
Sbjct: 7   AVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNY 66
Query: 321 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379
              +L  + Y   ++ C  IL    +NVKA F+RG+A  ++ N ++   D+ + L+L P
Sbjct: 67  CQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 321
           D+   +KN GNE F+      A + Y +A+           K   K  + Y      N A
Sbjct: 14  DLALMVKNKGNECFQKGDYPQAMKHYTEAI-----------KRNPKDAKLYS-----NRA 57
Query: 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
           A   K   ++ A+  C++ + +EP  +K   R+  A  +M ++ + +  Y++ALDL
Sbjct: 58  ACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 27/126 (21%), Positives = 57/126 (45%), Gaps = 9/126 (7%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           NS   ++ L   +  Q  Y +A+ Y     Q   +    +  ++Y     N+     K  
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYY----QKALELDPNNAEAWY-----NLGNAYYKQG 57
Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
            Y  AI      L ++PNN +A +  G A     ++++ ++ Y++AL+L PN+ +  + +
Sbjct: 58  DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 117
Query: 389 AFVRKQ 394
              +++
Sbjct: 118 GNAKQK 123

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 29/128 (22%), Positives = 54/128 (42%), Gaps = 13/128 (10%)
Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLK 326
           NS   ++ L   +  Q  Y +A+ Y            QK    Y     A  N+     K
Sbjct: 7   NSAEAWYNLGNAYYKQGDYDEAIEYY-----------QKALELYPNNAEAWYNLGNAYYK 55
Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
              Y  AI      L + PNN +A +  G A     ++++ ++ Y++AL+L PN+ +  +
Sbjct: 56  QGDYDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQ 115
Query: 387 EIAFVRKQ 394
            +   +++
Sbjct: 116 NLGNAKQK 123

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	414
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	1e-160
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	3e-90
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	2e-89
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	3e-89
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	5e-88
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	7e-88
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	9e-88
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	5e-86
1z81_A	229	Cyclophilin; structural genomics, structural genom	3e-84
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	2e-82
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	2e-81
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	5e-81
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	6e-81
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	1e-80
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	2e-80
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	1e-79
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	2e-79
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	9e-79
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	2e-74
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	2e-55
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	8e-54
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	3e-53
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	2e-51
2b71_A	196	Cyclophilin-like protein; structural genomics, str	1e-50
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	5e-49
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	9e-49
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	4e-48
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	3e-46
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	5e-46
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	6e-46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	4e-44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	3e-42
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	5e-42
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	2e-40
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	2e-38
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	2e-38
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	6e-27
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	2e-25
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	3e-25
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	7e-25
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	3e-24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-21
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	2e-21
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-20
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	6e-20
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	8e-20
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	4e-19
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-18
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-18
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-11
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	9e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-12
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	9e-10
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-09
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	8e-17
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-16
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	4e-15
2l6j_A	111	TPR repeat-containing protein associated with HSP;	1e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-13
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	8e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-12
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	9e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-12
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-05
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	7e-12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	3e-07
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-05
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-11
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	7e-06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-11
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	5e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-06
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	3e-11
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	9e-11
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-10
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	7e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	7e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	7e-07
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-05
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	8e-06
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	7e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	9e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	1e-07
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	5e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	9e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-07
3k9i_A	117	BH0479 protein; putative protein binding protein,	3e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-07
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-07
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-07
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-07
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	8e-06
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	2e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	3e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-06
2kat_A	115	Uncharacterized protein; NESG, structure, structur	4e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-06
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-06
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	3e-04
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	7e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	9e-06
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	1e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	4e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	5e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	7e-05
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	8e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	1e-04
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	2e-04
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	4e-04
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	6e-04

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  454 bits (1171), Expect = e-160
 Identities = 165/405 (40%), Positives = 224/405 (55%), Gaps = 48/405 (11%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
              N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G 
Sbjct: 12  NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGC 71

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
                                                        FHRII +FMIQGGD 
Sbjct: 72  --------------------------------------------PFHRIIKKFMIQGGDF 87

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
           +N NGTGGESIYG  FEDENF  KH  EG LS+AN G  NTN SQFFIT  P PHLDGK+
Sbjct: 88  SNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAG-SNTNGSQFFITTVPTPHLDGKH 146

Query: 186 VVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFP 245
           VVFG V +G GVA+ +  VE + +KP   C I   G+L   +DWG+   DGS D +P FP
Sbjct: 147 VVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFP 206

Query: 246 EDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQ 305
           ED   + + V   ++  +   +KN GN +FK      A +KY K +RY++    +     
Sbjct: 207 EDADVDLKDVD--KILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 264

Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
               +    + +LN+ A +LK   ++ A++ C + L ++P+N KAL+RR +    +  ++
Sbjct: 265 GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 324

Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
           Q L D ++A ++ P D+ I  E+  V+++++   + EK  YA+MF
Sbjct: 325 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMF 369

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens} Length = 192

 Score =  269 bits (691), Expect = 3e-90
 Identities = 84/221 (38%), Positives = 107/221 (48%), Gaps = 47/221 (21%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK-LGKALHFTGS 65
             G+     D+ I  E VGR++ +LF  I PKT +NF  LC+GE G GK  GK L + GS
Sbjct: 16  PRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGS 75

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
            FHR++                                              FMIQGGD 
Sbjct: 76  TFHRVVK--------------------------------------------NFMIQGGDF 91

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
           +  NG GGESIYG  F+DENF LKH     LS+AN G  +TN SQFFIT  P PHLDG +
Sbjct: 92  SEGNGKGGESIYGGYFKDENFILKHDRAFLLSMANRG-KHTNGSQFFITTKPAPHLDGVH 150

Query: 186 VVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQLSL 225
           VVFG V  GF V  ++  ++     +P     + + G L+ 
Sbjct: 151 VVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLAT 191

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A Length = 179

 Score =  267 bits (685), Expect = 2e-89
 Identities = 87/219 (39%), Positives = 106/219 (48%), Gaps = 47/219 (21%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
           K      F D++I  +  GR+V ELF  + PKT ENFR LCTGE G GK   K LH+   
Sbjct: 6   KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSC 65

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
            FHR++                                              FM+QGGD 
Sbjct: 66  LFHRVVK--------------------------------------------DFMVQGGDF 81

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
           +  NG GGESIYG  FEDE+F +KH  E  LS+AN G  +TN SQFFIT  P PHLDG +
Sbjct: 82  SEGNGRGGESIYGGFFEDESFAVKHNKEFLLSMANRG-KDTNGSQFFITTKPTPHLDGHH 140

Query: 186 VVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
           VVFG V  G  V RE+   +     KP     I + G+L
Sbjct: 141 VVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL 179

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A* Length = 177

 Score =  267 bits (684), Expect = 3e-89
 Identities = 89/219 (40%), Positives = 112/219 (51%), Gaps = 47/219 (21%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
           K+    VFLDV+I     GR+V+EL+  I P+T  NF  LCTG  G GK+ GK LH+ GS
Sbjct: 3   KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGS 62

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
            FHR+I                                              FMIQGGD 
Sbjct: 63  TFHRVIK--------------------------------------------NFMIQGGDF 78

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
           T  +GTGGESIYG  F+DE F +KH     +S+AN G PNTN SQFFIT  P PHL+  +
Sbjct: 79  TKGDGTGGESIYGGMFDDEEFVMKHDEPFVVSMANKG-PNTNGSQFFITTTPAPHLNNIH 137

Query: 186 VVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
           VVFG V  G  V  ++ Y++    ++PL    I N G+L
Sbjct: 138 VVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 176

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A Length = 173

 Score =  263 bits (675), Expect = 5e-88
 Identities = 100/214 (46%), Positives = 118/214 (55%), Gaps = 45/214 (21%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
              VF D++IG +  GR+V+EL+  +VPKTA NFRALCTGE G GK GK LHF GS+FHR
Sbjct: 3   RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           IIP FMIQGGD T  NGTGGESIYG        K                          
Sbjct: 63  IIPNFMIQGGDFTRGNGTGGESIYGE-------K-------------------------- 89

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                      F DENFK KH   G LS+AN G PNTN SQFF+       LDGK+VVFG
Sbjct: 90  -----------FPDENFKEKHTGPGVLSMANAG-PNTNGSQFFLCTVKTEWLDGKHVVFG 137

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V +G  V + V    +++ KP+  C I + GQL
Sbjct: 138 RVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A* Length = 186

 Score =  263 bits (675), Expect = 7e-88
 Identities = 101/219 (46%), Positives = 122/219 (55%), Gaps = 45/219 (20%)

Query: 3   KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHF 62
           +++  +GN +V+ D+SIG+   GR+ +ELF   VP TAENFRALCTGE G G+ GK L +
Sbjct: 12  ENLYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCY 71

Query: 63  TGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQG 122
           TGS FHRIIPQFMIQGGD T  +GTGGESIYG        K                   
Sbjct: 72  TGSFFHRIIPQFMIQGGDFTRGDGTGGESIYGS-------K------------------- 105

Query: 123 GDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLD 182
                             F DENF   H     LS+AN G PNTN SQFFIT  PCP LD
Sbjct: 106 ------------------FRDENFVYTHDAPFLLSMANAG-PNTNGSQFFITTVPCPWLD 146

Query: 183 GKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSG 221
           GK+VVFG V +G  V + +    ++N KP  +  IT SG
Sbjct: 147 GKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASG 185

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A Length = 177

 Score =  263 bits (674), Expect = 9e-88
 Identities = 92/224 (41%), Positives = 115/224 (51%), Gaps = 48/224 (21%)

Query: 1   MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
           M  +     N +VF DVSIG ++VGRM IELF  +VPKTAENFR  CTGE    K G  +
Sbjct: 1   MAVANSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGE--FRKDGVPI 58

Query: 61  HFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMI 120
            + GS FHR+I                                              FMI
Sbjct: 59  GYKGSTFHRVIK--------------------------------------------DFMI 74

Query: 121 QGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180
           QGGD  N +GTG  SIY   F DENFKL+H   G LS+AN+G P+TN  QFFIT + C  
Sbjct: 75  QGGDFVNGDGTGVASIYRGPFADENFKLRHSAPGLLSMANSG-PSTNGCQFFITCSKCDW 133

Query: 181 LDGKNVVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
           LDGK+VVFG +  G  V R++  V    N+KP +   I+  G++
Sbjct: 134 LDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 177

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A* Length = 170

 Score =  258 bits (662), Expect = 5e-86
 Identities = 99/214 (46%), Positives = 116/214 (54%), Gaps = 46/214 (21%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
              VF D+SI     GR++ ELF  I P+T ENFRALCTGE   G  GK LH+  S FHR
Sbjct: 3   RSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKI-GSRGKNLHYKNSIFHR 61

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           IIPQFM QGGDITN NG+GGESIYG                                   
Sbjct: 62  IIPQFMCQGGDITNGNGSGGESIYGR-------S-------------------------- 88

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                      F DENF +KH   G LS+AN G PNTN+SQFFITL PCP LDGK+VVFG
Sbjct: 89  -----------FTDENFNMKHDQPGLLSMANAG-PNTNSSQFFITLVPCPWLDGKHVVFG 136

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V +G  V RE+    A++     +  IT+ G+L
Sbjct: 137 KVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1 Length = 229

 Score =  256 bits (655), Expect = 3e-84
 Identities = 79/227 (34%), Positives = 109/227 (48%), Gaps = 51/227 (22%)

Query: 1   MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
           +   +    N +VF+D+++G   +G+   ELF++IVPKT+ENFR  CTGE         +
Sbjct: 50  LSNLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGE--YKVNNLPV 107

Query: 61  HFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMI 120
            +  + FHR+I                                             +FMI
Sbjct: 108 GYKNTIFHRVIK--------------------------------------------EFMI 123

Query: 121 QGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180
           QGGD  N NG+G  SIYG  F+DENF +KH  EG LS+AN+G PNTN  QFFIT   C  
Sbjct: 124 QGGDFINHNGSGSLSIYGEKFDDENFDIKHDKEGLLSMANSG-PNTNGCQFFITTKKCEW 182

Query: 181 LDGKNVVFGCV--RQGFGVAREVSYV--EAENDKPLVTCTITNSGQL 223
           LDGKNVVFG +       + +++  V       KP +   +   G+L
Sbjct: 183 LDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 229

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A* Length = 188

 Score =  249 bits (639), Expect = 2e-82
 Identities = 89/225 (39%), Positives = 116/225 (51%), Gaps = 53/225 (23%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
              V+ D+ IG+E VGR++  LF   VPKT +NF AL TGE G G       +  S+FHR
Sbjct: 15  TVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEKGFG-------YKNSKFHR 67

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           +I  FMIQGGD T  +GTGG+SIYG  F DENFKLK      H                 
Sbjct: 68  VIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLK------H----------------- 104

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                  YGP              G +S+AN G  +TN SQFFIT      LDGK+VVFG
Sbjct: 105 -------YGP--------------GWVSMANAG-KDTNGSQFFITTVKTAWLDGKHVVFG 142

Query: 190 CVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSLNEDWGVAE 233
            V +G  V R+V   + +  DKPL    I + G++ + + + +A+
Sbjct: 143 KVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPFAIAK 187

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A Length = 172

 Score =  246 bits (631), Expect = 2e-81
 Identities = 89/223 (39%), Positives = 112/223 (50%), Gaps = 52/223 (23%)

Query: 1   MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKAL 60
           M     K     VF D+ IG    GR+V+EL   IVP+TAENFRALCTGE G G      
Sbjct: 1   MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGERGFG------ 54

Query: 61  HFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMI 120
            +    FHR+IPQFM QGGD    +GTGG+SIYG        K                 
Sbjct: 55  -YHNCCFHRVIPQFMCQGGDFVKGDGTGGKSIYGR-------K----------------- 89

Query: 121 QGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPH 180
                               F+DENF+L+H+  G LS+AN+G PNTN SQFFI    C  
Sbjct: 90  --------------------FDDENFQLRHEGFGVLSMANSG-PNTNGSQFFICTTKCDW 128

Query: 181 LDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
           LDGK+VVFG V  G  V +++  V +++ K      I+  G+L
Sbjct: 129 LDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL 171

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} PDB: 3o7t_A Length = 164

 Score =  245 bits (628), Expect = 5e-81
 Identities = 85/216 (39%), Positives = 111/216 (51%), Gaps = 52/216 (24%)

Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
               VF ++SI ++  GR+V +L+   VPKTA+NFR L TG++G G       +  S FH
Sbjct: 1   AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFH 53

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
           R+IPQFM+QGGD T  NGTGG+SIYG        K                         
Sbjct: 54  RVIPQFMLQGGDFTRHNGTGGKSIYGE-------K------------------------- 81

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
                       F DENF++KH   G LS+AN G  NTN SQFFIT  P   LDGK+VVF
Sbjct: 82  ------------FADENFQVKHTKPGLLSMANAG-ANTNGSQFFITTVPTSWLDGKHVVF 128

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           G V +G  + R+V    + + K   T  IT+ G ++
Sbjct: 129 GEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTVA 164

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ... Length = 165

 Score =  245 bits (627), Expect = 6e-81
 Identities = 91/216 (42%), Positives = 113/216 (52%), Gaps = 52/216 (24%)

Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G G       + GS FH
Sbjct: 2   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFH 54

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
           R+IP FM Q GD TN NGTGG+SIYG        +                         
Sbjct: 55  RVIPSFMCQAGDFTNHNGTGGKSIYGS-------R------------------------- 82

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
                       F DENF LKH   G LS+AN G PNTN SQFFI       LDGK+VVF
Sbjct: 83  ------------FPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVF 129

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           G V +G  V +++    +++ +      IT+ GQLS
Sbjct: 130 GHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 165

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus} Length = 234

 Score =  247 bits (632), Expect = 1e-80
 Identities = 49/243 (20%), Positives = 79/243 (32%), Gaps = 63/243 (25%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG----------KL 56
              N  V++D+ +  E +GR+ I+LF+   P   ENF  L  G+  +             
Sbjct: 11  SGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNR 70

Query: 57  GKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIP 116
                + G +FH ++    I  GDI N NG+   ++Y        F              
Sbjct: 71  HINRTYEGCKFHNVLHNNYIVSGDIYNSNGSSAGTVYCDEPIPPVF-------------- 116

Query: 117 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLA----NTGHPNTNNSQFF 172
                                       ++   H+ +G LSL      +G     +S F 
Sbjct: 117 ---------------------------GDYFYPHESKGLLSLVPYTDESG-NRYYDSTFM 148

Query: 173 ITL------APCPHLDGKNVVFGCVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQLSL 225
           ITL           LD   VV G V  G  V  +++ +      +   T +I   G    
Sbjct: 149 ITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFSIGKCGAYLD 208

Query: 226 NED 228
           +  
Sbjct: 209 SSQ 211

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A Length = 173

 Score =  244 bits (625), Expect = 2e-80
 Identities = 89/214 (41%), Positives = 110/214 (51%), Gaps = 52/214 (24%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  V++D+ IG +  GR+ + L   +VP TAENFR LCT E G G       F GS FHR
Sbjct: 11  NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEKGFG-------FKGSSFHR 63

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           IIPQFM QGGD TN NGTGG+SIYG        K                          
Sbjct: 64  IIPQFMCQGGDFTNHNGTGGKSIYGK-------K-------------------------- 90

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                      F+DENF LKH   G LS+AN+G PNTN SQFF+T      LDGK+VVFG
Sbjct: 91  -----------FDDENFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFG 138

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V +G  V R++    +++ KP     I + G+ 
Sbjct: 139 EVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEY 172

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A Length = 172

 Score =  242 bits (619), Expect = 1e-79
 Identities = 87/215 (40%), Positives = 105/215 (48%), Gaps = 54/215 (25%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
              V+ DV I  E +GR+ I LF    P T ENFR LCTGE+G G       +  S FHR
Sbjct: 11  TAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEHGFG-------YKDSIFHR 63

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           +I  FMIQGGD TNF+GTGG+SIYG  F DEN  +K      H                 
Sbjct: 64  VIQNFMIQGGDFTNFDGTGGKSIYGEKFADENLNVK------HF---------------- 101

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                                   G LS+AN G PNTN SQFFIT AP P LDG++VVFG
Sbjct: 102 -----------------------VGALSMANAG-PNTNGSQFFITTAPTPWLDGRHVVFG 137

Query: 190 CVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
            V  G  V   +   +   +D+P+    I  SG+L
Sbjct: 138 KVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL 172

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens} Length = 184

 Score =  242 bits (619), Expect = 2e-79
 Identities = 94/214 (43%), Positives = 109/214 (50%), Gaps = 52/214 (24%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  VF D+++  E +GR+  ELF   VPKTAENFRAL TGE G G       + GS FHR
Sbjct: 22  NPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHR 74

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           IIP FM QGGD T  NGTGG+SIYG  FEDENF LK      H                 
Sbjct: 75  IIPGFMCQGGDFTRHNGTGGKSIYGEKFEDENFILK------H----------------- 111

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                   GP              G LS+AN G PNTN SQFFI  A    LDGK+VVFG
Sbjct: 112 -------TGP--------------GILSMANAG-PNTNGSQFFICTAKTEWLDGKHVVFG 149

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V++G  +   +    + N K     TI + GQL
Sbjct: 150 KVKEGMNIVEAMERFGSRNGKTSKKITIADCGQL 183

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi} Length = 193

 Score =  240 bits (615), Expect = 9e-79
 Identities = 87/222 (39%), Positives = 108/222 (48%), Gaps = 54/222 (24%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSR 66
           KE +  V+ DV   EE +GR+V++L   IVPKTA+NFR LC    G+G       + GS 
Sbjct: 24  KEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGST 76

Query: 67  FHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDIT 126
           FHRIIP FM+QGGD T  NGTGG SIYG  F DENF+LK      H              
Sbjct: 77  FHRIIPGFMVQGGDYTAHNGTGGRSIYGEKFPDENFELK------H-------------- 116

Query: 127 NFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV 186
                                      G LS+AN G  +TN SQFFITL     LD K+V
Sbjct: 117 ----------TKE--------------GILSMANCG-AHTNGSQFFITLGKTQWLDEKHV 151

Query: 187 VFGCVRQGFGVAREVSYVEAEN--DKPLVTCTITNSGQLSLN 226
           VFG V +G  V  +++   +E+   K      I + G L  N
Sbjct: 152 VFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLGSN 193

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1 Length = 172

 Score =  229 bits (585), Expect = 2e-74
 Identities = 88/223 (39%), Positives = 104/223 (46%), Gaps = 61/223 (27%)

Query: 10  NYIVFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTG 64
              VF DV        E KVGR+V  LF   VPKTA+NFR LC    G+G       +  
Sbjct: 2   MSQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRE 54

Query: 65  SRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGD 124
           S FHRIIP FMIQGGD T  NGTGG SIYG        K                     
Sbjct: 55  STFHRIIPNFMIQGGDFTRGNGTGGRSIYGD-------K--------------------- 86

Query: 125 ITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGK 184
                           F DENF  KH  +G LS+AN G PNTN SQFFIT A    LDGK
Sbjct: 87  ----------------FADENFSRKHDKKGILSMANAG-PNTNGSQFFITTAVTSWLDGK 129

Query: 185 NVVFGCV--RQGFGVAREVSYVEAEN--DKPLVTCTITNSGQL 223
           +VVFG V   + + V +E+  + + +   +      I N G+L
Sbjct: 130 HVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 172

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens} Length = 203

 Score =  181 bits (461), Expect = 2e-55
 Identities = 74/230 (32%), Positives = 94/230 (40%), Gaps = 61/230 (26%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G +V+EL+    PKT +NF  L    Y          + G++FHRII  FMIQGGD T 
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG SIYG  FEDE           H                               
Sbjct: 70  -TGRGGASIYGKQFEDE----------LH------------------------------- 87

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
               LK    G L++AN G P+TN SQFF+TLAP   LDGK+ +FG V QG G+   V  
Sbjct: 88  --PDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGM 144

Query: 204 VE-AENDKPL-----VTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPED 247
           VE    D+P+     +    +  G        G     G    +P     
Sbjct: 145 VETNSQDRPVDDVKIIKAYPSGGGGSGGGSGGGSGGGSGDGGAFPEIHVA 194

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1 Length = 160

 Score =  175 bits (446), Expect = 8e-54
 Identities = 66/197 (33%), Positives = 82/197 (41%), Gaps = 56/197 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G + I LF     KT +NF       Y          +    FHR+I  FM+Q GD + 
Sbjct: 14  MGDIHISLFYKECKKTVQNFSVHSINGY----------YNNCIFHRVIKHFMVQTGDPSG 63

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
            +GTGGESI+G  FEDE F                                         
Sbjct: 64  -DGTGGESIWGNEFEDEFFD---------------------------------------- 82

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
               L H     +S+AN G PNTN SQFFIT  PCP LD K+ VFG V QG  +  ++  
Sbjct: 83  ---HLNHSKPFMVSMANCG-PNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEK 138

Query: 204 VE-AENDKPLVTCTITN 219
           V   + DKPL    I N
Sbjct: 139 VRTDKRDKPLEDIKILN 155

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 176

 Score =  174 bits (443), Expect = 3e-53
 Identities = 72/209 (34%), Positives = 88/209 (42%), Gaps = 57/209 (27%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
              D +I    +G +  +LF    PKT ENF       Y          + G  FHRII 
Sbjct: 19  RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHSRNGY----------YNGHTFHRIIK 68

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
            FMIQ GD T   G GGESI+G  FEDE          FH                    
Sbjct: 69  GFMIQTGDPTG-TGMGGESIWGGEFEDE----------FH-------------------- 97

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
                          L+H     LS+AN G  NTN SQFFIT+ P P LD K+ VFG V 
Sbjct: 98  -------------STLRHDRPYTLSMANAG-SNTNGSQFFITVVPTPWLDNKHTVFGRVT 143

Query: 193 QGFGVAREVSYVE--AENDKPLVTCTITN 219
           +G  V + +S V+   + DKP    +I N
Sbjct: 144 KGMEVVQRISNVKVNPKTDKPYEDVSIIN 172

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A Length = 166

 Score =  169 bits (431), Expect = 2e-51
 Identities = 71/198 (35%), Positives = 89/198 (44%), Gaps = 56/198 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G +V+EL+    PKT +NF  L    Y          + G++FHRII  FMIQGGD T 
Sbjct: 20  MGIIVLELYWKHAPKTCKNFAELARRGY----------YNGTKFHRIIKDFMIQGGDPTG 69

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG SIYG  FEDE           H                               
Sbjct: 70  -TGRGGASIYGKQFEDE----------LH------------------------------- 87

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
               LK    G L++AN G P+TN SQFF+TLAP   LDGK+ +FG V QG G+   V  
Sbjct: 88  --PDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGM 144

Query: 204 VE-AENDKPLVTCTITNS 220
           VE    D+P+    I  +
Sbjct: 145 VETNSQDRPVDDVKIIKA 162

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1 Length = 196

 Score =  168 bits (427), Expect = 1e-50
 Identities = 66/197 (33%), Positives = 89/197 (45%), Gaps = 56/197 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G   +EL+ +  PKT  NF  LC   +          +  + FHR+IP F+IQGGD T 
Sbjct: 47  LGDFEVELYWYHSPKTCLNFYTLCEMGF----------YDNTIFHRVIPNFVIQGGDPTG 96

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG+SIYG  FEDE           +                               
Sbjct: 97  -TGKGGKSIYGEYFEDE----------IN------------------------------- 114

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
              +LKH   G LS++N G PNTN+SQFFITLAP PHLDGK+ +F  V +       ++ 
Sbjct: 115 --KELKHTGAGILSMSNNG-PNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIAS 171

Query: 204 VEA-ENDKPLVTCTITN 219
           V+    +KP+    I  
Sbjct: 172 VQTTATNKPIFDLKILR 188

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A Length = 185

 Score =  163 bits (415), Expect = 5e-49
 Identities = 60/211 (28%), Positives = 85/211 (40%), Gaps = 58/211 (27%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           ++          G +  ELF    PK  +NF AL    Y          +  + FH+ I 
Sbjct: 14  LYFQGVRIITNYGDLKFELFCSQCPKACKNFLALSASGY----------YKNTIFHKNIK 63

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
            F+IQGGD T   G GGESIYG  F+DE           +                    
Sbjct: 64  GFIIQGGDPTG-TGKGGESIYGRYFDDE----------IYP------------------- 93

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTG---HPNTNNSQFFITLAPCPHLDGKNVVFG 189
                         +LK+   G LS+A+ G    PNTN SQFFIT +  P L+G+ V+FG
Sbjct: 94  --------------ELKYDRRGILSMASKGASKKPNTNGSQFFITYSSLPQLNGEYVIFG 139

Query: 190 CVRQGFGVAREVSYVEA-ENDKPLVTCTITN 219
            +  GF     +    + ++ KP+    I +
Sbjct: 140 KLIDGFETLNTLENCPSDKSHKPIDEIIIKD 170

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii} Length = 201

 Score =  163 bits (415), Expect = 9e-49
 Identities = 55/205 (26%), Positives = 78/205 (38%), Gaps = 60/205 (29%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
            G + IEL   + P+  ++F  LC  +Y          F  + FHR I  FMIQGG    
Sbjct: 15  QGSLNIELHADMAPRACDSFLRLCAVKY----------FDDTIFHRCIRNFMIQGGRAEL 64

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIY------ 137
              +                                              +S        
Sbjct: 65  RQPSK----------------------------------------KKEVQQSPRSISGFP 84

Query: 138 -GPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGF 195
            G  FEDE + +L H+  G LS+AN G  ++N S+FFIT   C HL+ K+ +FG V  G 
Sbjct: 85  GGAPFEDEFDNRLVHQGIGVLSMANDG-KHSNLSEFFITFKSCEHLNNKHTIFGRVVGGL 143

Query: 196 GVAREVSYVEA-ENDKPLVTCTITN 219
            V R+   +E  + DKPL    +  
Sbjct: 144 DVLRQWEKLETDKKDKPLKPPKVEE 168

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A* Length = 161

 Score =  160 bits (407), Expect = 4e-48
 Identities = 68/198 (34%), Positives = 81/198 (40%), Gaps = 57/198 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC   Y          + G  FHR I  FM+Q GD T 
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTG 58

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG SI+G  FEDE          +                                
Sbjct: 59  -TGRGGNSIWGKKFEDE----------YSE------------------------------ 77

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
               LKH   G +S+AN G PNTN SQFFIT    PHLD K  VFG V  G     E+  
Sbjct: 78  ---YLKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEK 133

Query: 204 VE--AENDKPLVTCTITN 219
           +    +  +PL    I +
Sbjct: 134 LPVNEKTYRPLNDVHIKD 151

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1 Length = 197

 Score =  157 bits (398), Expect = 3e-46
 Identities = 67/198 (33%), Positives = 84/198 (42%), Gaps = 57/198 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
            G + +EL   + PKT ENF  LC   Y          + G+ FHR I  F+IQGGD T 
Sbjct: 28  KGDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG 77

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             GTGGES +G  F+DE          F                                
Sbjct: 78  -TGTGGESYWGKPFKDE----------FRP------------------------------ 96

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
               L H   G LS+AN+G PN+N SQFFIT   C +LD K+ +FG V  GF V   +  
Sbjct: 97  ---NLSHTGRGILSMANSG-PNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMEN 152

Query: 204 VE--AENDKPLVTCTITN 219
           VE   + D+P     I  
Sbjct: 153 VESDPKTDRPKEEIRIDA 170

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens} Length = 185

 Score =  155 bits (395), Expect = 5e-46
 Identities = 54/198 (27%), Positives = 80/198 (40%), Gaps = 57/198 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
            G + IEL+    PK   NF  LC   Y          +  + FHR++P F++QGGD T 
Sbjct: 33  AGDIDIELWSKEAPKACRNFIQLCLEAY----------YDNTIFHRVVPGFIVQGGDPTG 82

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G+GGESIYG  F+DE          FH                               
Sbjct: 83  -TGSGGESIYGAPFKDE----------FHS------------------------------ 101

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG-CVRQGFGVAREVS 202
              +L+    G +++AN G  + N SQFF TL     L+ K+ +FG            +S
Sbjct: 102 ---RLRFNRRGLVAMANAG-SHDNGSQFFFTLGRADELNNKHTIFGKVTGDTVYNMLRLS 157

Query: 203 YVEA-ENDKPLVTCTITN 219
            V+  ++++P     I +
Sbjct: 158 EVDIDDDERPHNPHKIKS 175

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  156 bits (395), Expect = 6e-46
 Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 7/184 (3%)

Query: 233 ENDGSQDVYPPFPED--WKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKA 290
            + G +++Y    +   +    E     +       IK  GNE+FK N +++A  KYK+A
Sbjct: 10  HSSGRENLYFQGAKKSIYDYTDE-----EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEA 64

Query: 291 VRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
           + +     +   +      ++   +  LN+A    K K Y +AI+    +L ++ NNVKA
Sbjct: 65  LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKA 124

Query: 351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMF 410
           L++ G A +     E+  ++  +A  L PN+  I         +++     +K+T+  MF
Sbjct: 125 LYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184

Query: 411 QNGK 414
             G 
Sbjct: 185 DKGP 188

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  155 bits (393), Expect = 4e-44
 Identities = 56/210 (26%), Positives = 105/210 (50%), Gaps = 5/210 (2%)

Query: 207 ENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQME--DVI 264
           + +  +V    + +      E + +  N  ++  Y    + ++   E+ ++N  E  +  
Sbjct: 90  KGEHSIVYLKPSYAFGSVGKEKFQIPPN--AELKYELHLKSFEKAKESWEMNSEEKLEQS 147

Query: 265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ 324
             +K  G  YFK  +   A  +YKK V +++ Y  S S  + +  ++   A+ LN+A   
Sbjct: 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLE-YESSFSNEEAQKAQALRLASHLNLAMCH 206

Query: 325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
           LK +A+  AI  C+  L ++ NN K L RRG A +++N+FE    D+++ L L PN++  
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266

Query: 385 LKEIAFVRKQMRHHLNLEKMTYARMFQNGK 414
             ++A  ++++R  L  EK  YA MF+   
Sbjct: 267 KTQLAVCQQRIRRQLAREKKLYANMFERLA 296

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  150 bits (380), Expect = 3e-42
 Identities = 47/198 (23%), Positives = 83/198 (41%), Gaps = 4/198 (2%)

Query: 221 GQLSLNEDWGVAEN-DGSQDVYPPFPEDWKSNPETVQLNQMEDV--IRTIKNSGNEYFKL 277
           G+        V    D   +V     ++ K       +   E +      K  GN  FK 
Sbjct: 133 GKEGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKE 192

Query: 278 NRMHDAQRKYKKAVRYIKW-YNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336
            ++ +A ++Y+ A+ Y+   +        Q    +      LN+AA  +K K Y  AI  
Sbjct: 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGH 252

Query: 337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396
           C+ +L  E  N KALFRRG+A+  +   +    D+ +A    P+D+ I +E+  + +Q +
Sbjct: 253 CNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEK 312

Query: 397 HHLNLEKMTYARMFQNGK 414
                +K  Y  +F+   
Sbjct: 313 ALYQKQKEMYKGIFKGKD 330

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  144 bits (365), Expect = 5e-42
 Identities = 31/157 (19%), Positives = 63/157 (40%), Gaps = 3/157 (1%)

Query: 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN--QSQSKTQQKHFRSYYTA 315
           +     +  ++  GNE F      +A   Y+ A+  +      +   + +          
Sbjct: 5   DDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIP 64

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
              NM+   L       A     ++L  E  N KALFRR +A+++    ++  +D +  L
Sbjct: 65  LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124

Query: 376 DLLPNDQQIL-KEIAFVRKQMRHHLNLEKMTYARMFQ 411
              P    ++ +E+  V ++        ++TY++MFQ
Sbjct: 125 RNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ 161

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1 Length = 191

 Score =  141 bits (357), Expect = 2e-40
 Identities = 59/203 (29%), Positives = 77/203 (37%), Gaps = 56/203 (27%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEY-----GKGKLGKALHFTGSRFHRIIPQFMIQGG 79
           G + I LF +  PKT  NF  L  G                 + G+ FHR+I  FMIQGG
Sbjct: 33  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGG 92

Query: 80  DITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGP 139
           D T   G GG    G  F DE          FH                           
Sbjct: 93  DPTG-TGRGGP---GYKFADE----------FHP-------------------------- 112

Query: 140 CFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV--RQGFGV 197
                  +L+      L++AN G P TN SQFFIT+   PHL+ ++ +FG V   +   V
Sbjct: 113 -------ELQFDKPYLLAMANAG-PGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRV 164

Query: 198 AREVSYVE-AENDKPLVTCTITN 219
              +S      ND+P     I +
Sbjct: 165 VEAISKTATDGNDRPTDPVVIES 187

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 232

 Score =  137 bits (347), Expect = 2e-38
 Identities = 48/213 (22%), Positives = 75/213 (35%), Gaps = 71/213 (33%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G + +EL+    P    NF  LC   Y          +  + FHR++  F++QGGD T 
Sbjct: 30  LGDLDVELWARECPLACRNFVQLCLEGY----------YVNTIFHRVVKDFIVQGGDPTG 79

Query: 84  FNGTGG--ESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCF 141
             G GG   +  G  F+ E           H                             
Sbjct: 80  -TGRGGADTTFDGKPFDVE----------THP---------------------------- 100

Query: 142 EDENFKLKHKFEGQLSLANTG-------------HPNTNNSQFFITLAPCPHLDGKNVVF 188
                +LK ++ G + +AN G                TN +QFFITLA    L+    +F
Sbjct: 101 -----RLKFRYRGLVGVANLGRSSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLF 155

Query: 189 GCV-RQGFGVAREVSYVEA-ENDKPLVTCTITN 219
           G V         + + +E  + D+P+    I +
Sbjct: 156 GKVTGHTLYNLMKFNDLEVGKEDRPMTPPFIKS 188

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  142 bits (360), Expect = 2e-38
 Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 1/170 (0%)

Query: 243 PFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS 302
               +       +   +  +    +K  G  YFK  +   A  +Y K V +++      S
Sbjct: 247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEM-EYGLS 305

Query: 303 KTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN 362
           + + K   S+  AA LN+A   LK + Y +A+  CD  L ++  N K L+RRG AQ+ MN
Sbjct: 306 EKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMN 365

Query: 363 NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 412
            FE    D+E+ L++ P ++    +I+  +K+ + H   ++  YA MF+ 
Sbjct: 366 EFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK 415

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  103 bits (260), Expect = 6e-27
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 20/166 (12%)

Query: 230 GVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKK 289
           G + + G     P  PE   + P    + Q+       +  GNE FK          Y  
Sbjct: 1   GSSGSSGMTVSGPGTPEPRPATPGASSVEQL-------RKEGNELFK-------CGDYGG 46

Query: 290 AVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK 349
           A   +  Y Q+         ++       N AA  LK + Y +A       +  +  +VK
Sbjct: 47  A---LAAYTQALGLDATPQDQAVL---HRNRAACHLKLEDYDKAETEASKAIEKDGGDVK 100

Query: 350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
           AL+RR +A   +   +Q + D ++ + L P ++   + +  +    
Sbjct: 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPS 146

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A Length = 164

 Score =  100 bits (251), Expect = 2e-25
 Identities = 43/208 (20%), Positives = 65/208 (31%), Gaps = 70/208 (33%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G +VI+ F    P+T +NF   C          +   +  + FHR+I  FMIQGG    F
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGG---F 55

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
                +       ++E                            NG              
Sbjct: 56  EPGMKQKATKEPIKNE-AN-------------------------NG-------------- 75

Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV--------VFGCVRQGFG 196
              LK+   G L++A T  P++  +QFFI +     L+            VF  V  G  
Sbjct: 76  ---LKNT-RGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMD 131

Query: 197 VAREVSYVE-----AENDKPLVTCTITN 219
              ++  V         D P     I +
Sbjct: 132 EVDKIKGVATGRSGMHQDVPKEDVIIES 159

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} PDB: 3t1u_A* Length = 167

 Score = 99.9 bits (250), Expect = 3e-25
 Identities = 44/208 (21%), Positives = 67/208 (32%), Gaps = 72/208 (34%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + +EL +   PKT ENF              K  H+ G+ FHR+I  FMIQGG    F
Sbjct: 13  GVIKLELDEAKAPKTVENFLNYV----------KKGHYDGTIFHRVINGFMIQGGG---F 59

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
                                                             +       +E
Sbjct: 60  EP------------------------------------------GLKQKPT--DAPIANE 75

Query: 145 -NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV--------VFGCVRQGF 195
            N  LK+     +++A T  P++  +QFFI +     L+  +         VFG V +G 
Sbjct: 76  ANNGLKND-TYTIAMARTNDPHSATAQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQ 134

Query: 196 GVAREVSYVE-----AENDKPLVTCTIT 218
            +  ++  V+        D P     I 
Sbjct: 135 DIVDKIKAVKTGSKGFHQDVPNDDVVIE 162

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A Length = 166

 Score = 99.2 bits (248), Expect = 7e-25
 Identities = 50/221 (22%), Positives = 75/221 (33%), Gaps = 72/221 (32%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
           +G+  V L  S G      + +EL K   P + +NF               +  +  + F
Sbjct: 2   KGDPHVLLTTSAGN-----IELELDKQKAPVSVQNFVDYV----------NSGFYNNTTF 46

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
           HR+IP FMIQGG    F     +    P  ++E                           
Sbjct: 47  HRVIPGFMIQGGG---FTEQMQQKKPNPPIKNE-AD------------------------ 78

Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNV- 186
            NG                 L++   G +++A T   ++  SQFFI +A    LD     
Sbjct: 79  -NG-----------------LRNT-RGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119

Query: 187 ----VFGCVRQGFGVAREVSYVE-----AENDKPLVTCTIT 218
               VFG V +G  VA ++S V         + P     I 
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVIL 160

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana} Length = 369

 Score =  102 bits (254), Expect = 3e-24
 Identities = 34/188 (18%), Positives = 56/188 (29%), Gaps = 38/188 (20%)

Query: 21  EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGD 80
             +     I L  +  P TA NF  L    +          + G    R    F++Q GD
Sbjct: 184 NIEDCVFRIVLDGYNAPVTAGNFVDLVERHF----------YDGMEIQRS-DGFVVQTGD 232

Query: 81  ITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC 140
                    +                      R +P  ++  G+ T F G+  E      
Sbjct: 233 PEGPAEGFIDPSTEKT----------------RTVPLEIMVTGEKTPFYGSTLE---ELG 273

Query: 141 FEDENFKLKHKFEGQLSLANTG-HPNTNNSQFFI-------TLAPCPHLDGKNVVFGCVR 192
                  +     G +++A      ++ +SQ F        T +    LDG+  VFG V 
Sbjct: 274 LYKAQVVIPFNAFGTMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVT 333

Query: 193 QGFGVARE 200
                  +
Sbjct: 334 DNEDFLAD 341

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 89.4 bits (222), Expect = 2e-21
 Identities = 28/129 (21%), Positives = 55/129 (42%), Gaps = 16/129 (12%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K   N+YFK        + Y+ A   IK+Y+Q+           YY     N +   L+ 
Sbjct: 17  KTQANDYFK-------AKDYENA---IKFYSQAIELNPSNA--IYYG----NRSLAYLRT 60

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           + Y  A+      + ++   +K  +RR  + +++  F   L+DYE  + + P+D+    +
Sbjct: 61  ECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMK 120

Query: 388 IAFVRKQMR 396
                K ++
Sbjct: 121 YQECNKIVK 129

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 88.0 bits (219), Expect = 2e-21
 Identities = 30/126 (23%), Positives = 59/126 (46%), Gaps = 16/126 (12%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           KN GNEYFK       +  Y  A   ++ YN++  +  +      Y+    N AA   K 
Sbjct: 17  KNKGNEYFK-------KGDYPTA---MRHYNEAVKRDPENA--ILYS----NRAACLTKL 60

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
             ++RA++ CD  + ++   +K   R+    V+M  + +  + YE AL + P++++  + 
Sbjct: 61  MEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREG 120

Query: 388 IAFVRK 393
           +    +
Sbjct: 121 VRNCLR 126

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 86.9 bits (216), Expect = 7e-21
 Identities = 28/130 (21%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           KN GNE F+       +  Y +A   +K Y ++  +  +      Y+    N AA   K 
Sbjct: 20  KNKGNECFQ-------KGDYPQA---MKHYTEAIKRNPKDA--KLYS----NRAACYTKL 63

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
             ++ A+  C++ + +EP  +K   R+  A  +M ++ + +  Y++ALDL  + ++    
Sbjct: 64  LEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADG 123

Query: 388 IAFVRKQMRH 397
                    +
Sbjct: 124 YQRCMMAQYN 133

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 85.4 bits (212), Expect = 3e-20
 Identities = 28/120 (23%), Positives = 52/120 (43%), Gaps = 16/120 (13%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GN  F         RKY +A      Y ++ ++        YYT    N A   LK 
Sbjct: 13  KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 56

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           +  ++A+  C   L ++  +VKA F  G+ Q+ M ++++ + + ++A  L    +    +
Sbjct: 57  QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 116

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 84.2 bits (209), Expect = 6e-20
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 16/129 (12%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GNE  K          ++ A   + +Y ++           Y+     N AA   K 
Sbjct: 16  KTEGNEQMK-------VENFEAA---VHFYGKAIELNPANA--VYFC----NRAAAYSKL 59

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
             Y  A+  C+  + ++P   KA  R G A  S+N   + +  Y++AL+L P+++     
Sbjct: 60  GNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSN 119

Query: 388 IAFVRKQMR 396
           +     ++R
Sbjct: 120 LKIAELKLR 128

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score = 83.4 bits (207), Expect = 8e-20
 Identities = 24/127 (18%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GN+                A   ++ Y+++       H    Y+    N +A   K 
Sbjct: 8   KEKGNKALS-------VGNIDDA---LQCYSEAIKLDPHNH--VLYS----NRSAAYAKK 51

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
             Y++A       + ++P+  K   R+  A   +N FE+  + YE+ L    N+ Q+ + 
Sbjct: 52  GDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEG 111

Query: 388 IAFVRKQ 394
           +  +  +
Sbjct: 112 LQNMEAR 118

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 81.9 bits (203), Expect = 4e-19
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 18/131 (13%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           +  G EYF        +  +  A   +K Y +   +  +      Y+    N AA   K 
Sbjct: 8   RLEGKEYFT-------KSDWPNA---VKAYTEMIKRAPEDA--RGYS----NRAAALAKL 51

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQQIL 385
            ++  AI  C+  +  +PN V+A  R+  AQ+++  +   L+  + A       N+    
Sbjct: 52  MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 111

Query: 386 KEIAFVRKQMR 396
           +EI  +  +  
Sbjct: 112 REIDQLYYKAS 122

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 83.4 bits (206), Expect = 2e-18
 Identities = 30/144 (20%), Positives = 58/144 (40%), Gaps = 16/144 (11%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GN  F         RKY +A      Y ++ ++        YYT    N A   LK 
Sbjct: 8   KEQGNRLFV-------GRKYPEA---AACYGRAITRNPLVA--VYYT----NRALCYLKM 51

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           +  ++A+  C   L ++  +VKA F  G+ Q+ M ++++ + + ++A  L    +    +
Sbjct: 52  QQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGD 111

Query: 388 IAFVRKQMRHHLNLEKMTYARMFQ 411
                 ++        +   R+ Q
Sbjct: 112 DIPSALRIAKKKRWNSIEERRIHQ 135

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 80.5 bits (199), Expect = 3e-18
 Identities = 25/131 (19%), Positives = 53/131 (40%), Gaps = 18/131 (13%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K+ GN           +++Y KA   I  Y Q+ S         Y +    N AA     
Sbjct: 15  KSEGNAAMA-------RKEYSKA---IDLYTQALSIAPANP--IYLS----NRAAAYSAS 58

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQIL 385
             +++A    +   +++P   KA  R G A+  M +++   + YE+ ++   N     + 
Sbjct: 59  GQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMK 118

Query: 386 KEIAFVRKQMR 396
           + +   ++++ 
Sbjct: 119 RGLETTKRKIE 129

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 83.1 bits (206), Expect = 1e-17
 Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 12/129 (9%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
             S  E  +  R  DA  KY+  ++             +     Y   +   +     K 
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMKT------------EPSVAEYTVRSKERICHCFSKD 285

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           +    AI +C ++L MEP+NV AL  R  A +    +++ +QDYE A +   NDQQI + 
Sbjct: 286 EKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREG 345

Query: 388 IAFVRKQMR 396
           +   ++ ++
Sbjct: 346 LEKAQRLLK 354

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 20/141 (14%), Positives = 45/141 (31%), Gaps = 16/141 (11%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
              G +     ++ DA  ++  AV                        A    A V L  
Sbjct: 7   LELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAM 50

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
              K A+     ++ ++ +   A  +RG   +     ++   D+++ L   P++Q+  + 
Sbjct: 51  GKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEA 110

Query: 388 IAFVRKQMRHHLNLEKMTYAR 408
            + + K         +   A 
Sbjct: 111 ESQLVKADEMQRLRSQALDAF 131

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 64.2 bits (157), Expect = 2e-11
 Identities = 19/163 (11%), Positives = 52/163 (31%), Gaps = 33/163 (20%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR--------------------YIKWYNQSQSKTQQKH 308
             G+   K  ++ +A+  +KK ++                      +  +Q+        
Sbjct: 76  QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD 135

Query: 309 FR---SYYTAAL----------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 355
           +    ++    L             A   +K    ++AI+       ++ +N +A ++  
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
                + + E  L +  + L L  + ++       V+K  +  
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLI 238

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.8 bits (143), Expect = 9e-10
 Identities = 12/80 (15%), Positives = 28/80 (35%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
             L +    L       A++     +  +P+N  A +RR    ++M   +  L D  + +
Sbjct: 5   KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVI 64

Query: 376 DLLPNDQQILKEIAFVRKQM 395
            L  +      +   +  + 
Sbjct: 65  ALKMDFTAARLQRGHLLLKQ 84

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 11/126 (8%), Positives = 36/126 (28%), Gaps = 28/126 (22%)

Query: 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 330
              + K      A    K A +                 +S  T A   ++ +  +   +
Sbjct: 161 AECFIKEGEPRKAISDLKAASK----------------LKSDNTEAFYKISTLYYQLGDH 204

Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQ------------VSMNNFEQGLQDYEQALDLL 378
           + +++   + L ++ ++ +      + +            +    +      YE  +   
Sbjct: 205 ELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 264

Query: 379 PNDQQI 384
           P+  + 
Sbjct: 265 PSVAEY 270

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 82.0 bits (203), Expect = 4e-17
 Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 12/130 (9%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
             S  E  +  R  DA  KY+  ++             +     Y   +   +     K 
Sbjct: 261 IESAEELIRDGRYTDATSKYESVMKT------------EPSIAEYTVRSKERICHCFSKD 308

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           +    AI +C ++L MEP+NV AL  R  A +    +++ +QDYE A +   NDQQI + 
Sbjct: 309 EKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREG 368

Query: 388 IAFVRKQMRH 397
           +   ++ ++ 
Sbjct: 369 LEKAQRLLKQ 378

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 18/136 (13%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
              G +     ++ DA  ++  AV                        A    A V L  
Sbjct: 30  LELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAM 73

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
              K A+     ++ ++ +   A  +RG   +     ++   D+++ L   P++ +  + 
Sbjct: 74  GKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEA 133

Query: 388 IAFVRK--QMRHHLNL 401
            + + K  +M+   + 
Sbjct: 134 QSQLIKSDEMQRLRSQ 149

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 66.2 bits (162), Expect = 5e-12
 Identities = 18/156 (11%), Positives = 50/156 (32%), Gaps = 20/156 (12%)

Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
           P   E+ ++  + ++ ++M+ +     +     F       A     K +          
Sbjct: 125 PSENEEKEAQSQLIKSDEMQRLR----SQALNAFGSGDYTAAIAFLDKILE--------- 171

Query: 302 SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
                     +        A   +K    ++AI+       ++ +N +A ++       +
Sbjct: 172 -------VCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224

Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH 397
            + E  L +  + L L  + ++       V+K  + 
Sbjct: 225 GDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 260

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 65.9 bits (161), Expect = 7e-12
 Identities = 22/130 (16%), Positives = 49/130 (37%), Gaps = 1/130 (0%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G+   K  ++ +A+  +KK ++        + + Q +  +S     L + A       
Sbjct: 99  QRGHLLLKQGKLDEAEDDFKKVLK-SNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG 157

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
            Y  AI   D IL +   + +    R    +      + + D + A  L  ++ +   +I
Sbjct: 158 DYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKI 217

Query: 389 AFVRKQMRHH 398
           + +  Q+  H
Sbjct: 218 STLYYQLGDH 227

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 59.3 bits (144), Expect = 9e-10
 Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 6/104 (5%)

Query: 296 WYNQSQSKTQQKHF----RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKAL 351
            ++       +  +            L +    L       A++     +  +P+N  A 
Sbjct: 6   HHSSGVDLGTENLYFQSMADV--EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAY 63

Query: 352 FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
           +RR    ++M   +  L D  + + L  +      +   +  + 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQ 107

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.0 bits (138), Expect = 4e-09
 Identities = 16/131 (12%), Positives = 46/131 (35%), Gaps = 8/131 (6%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
                Y++L     +  + ++ ++     +Q   +    + +      L+  A   ++  
Sbjct: 216 KISTLYYQLGDHELSLSEVRECLKL----DQDHKRCFAHYKQVKKLNKLIESAEELIRDG 271

Query: 329 AYKRAINLCDDILLMEPNN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
            Y  A +  + ++  EP+     V++  R            + ++   + L + P++   
Sbjct: 272 RYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNA 331

Query: 385 LKEIAFVRKQM 395
           LK+ A      
Sbjct: 332 LKDRAEAYLIE 342

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 75.4 bits (186), Expect = 8e-17
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 24/136 (17%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GN+ +K       ++ +  A   +K Y++++         +Y T    N AAV  + 
Sbjct: 8   KELGNDAYK-------KKDFDTA---LKHYDKAKELDPTNM--TYIT----NQAAVYFEK 51

Query: 328 KAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
             Y +   LC+  + +   N        KA  R G +      ++  +  Y ++L     
Sbjct: 52  GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHR 110

Query: 381 DQQILKEIAFVRKQMR 396
              +LK+     K ++
Sbjct: 111 TPDVLKKCQQAEKILK 126

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 73.9 bits (182), Expect = 3e-16
 Identities = 28/143 (19%), Positives = 54/143 (37%), Gaps = 24/143 (16%)

Query: 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAAL 317
           N M D     K+ GN  +K       Q+ ++KA      Y+++                 
Sbjct: 2   NAMTDAAIAEKDLGNAAYK-------QKDFEKA---HVHYDKAIE------LDPSNITFY 45

Query: 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQD 370
            N AAV  + K +   +  C+  + +            KA+ R G A    N+    +Q 
Sbjct: 46  NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105

Query: 371 YEQALDLLPNDQQILKEIAFVRK 393
           + ++L     D +++K++  + K
Sbjct: 106 FHRSLS-EFRDPELVKKVKELEK 127

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 75.9 bits (187), Expect = 4e-15
 Identities = 26/130 (20%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
           +K   N+YFK     +A + Y +A   I+    +           YY     N +   L+
Sbjct: 9   LKTQANDYFKAKDYENAIKFYSQA---IELNPSNAI---------YYG----NRSLAYLR 52

Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
            + Y  A+      + ++   +K  +RR  + +++  F   L+DYE  + + P+D+    
Sbjct: 53  TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 112

Query: 387 EIAFVRKQMR 396
           +     K ++
Sbjct: 113 KYQECNKIVK 122

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 65.8 bits (161), Expect = 1e-13
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 17/120 (14%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GN  FK       Q  Y++A   +  Y+Q  +   Q      Y+    N A   +K 
Sbjct: 8   KEQGNSLFK-------QGLYREA---VHCYDQLITAQPQNP--VGYS----NKAMALIKL 51

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
             Y +AI +C   L           R    Q  +   +  +   +  +  +    +    
Sbjct: 52  GEYTQAIQMCQQGLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVVEVDELPEGYDR 110

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 26/124 (20%), Positives = 48/124 (38%), Gaps = 18/124 (14%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           +  G EYF  +   +A + Y + ++              +  R Y      N AA   K 
Sbjct: 143 RLEGKEYFTKSDWPNAVKAYTEMIKR-----------APEDARGYS-----NRAAALAKL 186

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--IL 385
            ++  AI  C+  +  +PN V+A  R+  AQ+++  +   L+  + A             
Sbjct: 187 MSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSA 246

Query: 386 KEIA 389
           +EI 
Sbjct: 247 REID 250

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 61.0 bits (149), Expect = 8e-11
 Identities = 15/148 (10%), Positives = 45/148 (30%), Gaps = 17/148 (11%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 317
           K     + ++   +      KK +      +  +  +   T+ ++         A     
Sbjct: 76  KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVN 135

Query: 318 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
                              +  A+    +++   P + +    R  A   + +F + + D
Sbjct: 136 PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195

Query: 371 YEQALDLLPNDQQILKEIAFVRKQMRHH 398
             +A++  PN  +     A  +  ++ +
Sbjct: 196 CNKAIEKDPNFVRAYIRKATAQIAVKEY 223

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 4e-10
 Identities = 19/115 (16%), Positives = 37/115 (32%), Gaps = 17/115 (14%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GN+++K  +  +A   Y KA                K           N AA + + 
Sbjct: 9   KAEGNKFYKARQFDEAIEHYNKAWEL------------HKDITYLN-----NRAAAEYEK 51

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
             Y+ AI+  +D +              ++   + N    L D ++ ++      
Sbjct: 52  GEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSL 106

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 10/80 (12%), Positives = 24/80 (30%), Gaps = 1/80 (1%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
                     K + +  AI   +    +  +    L  R  A+     +E  +     A+
Sbjct: 7   KEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAISTLNDAV 65

Query: 376 DLLPNDQQILKEIAFVRKQM 395
           +     +   K I+    ++
Sbjct: 66  EQGREMRADYKVISKSFARI 85

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 63.3 bits (154), Expect = 2e-12
 Identities = 16/126 (12%), Positives = 51/126 (40%), Gaps = 16/126 (12%)

Query: 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNM 320
           +D++  I +   +++   R+ +A+  ++    Y                  Y    ++ +
Sbjct: 33  DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVDYIMGL 76

Query: 321 AAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
           AA+    + +++A +L      +  N+   +F  G+ Q+ +    +  + +E  +    +
Sbjct: 77  AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136

Query: 381 DQQILK 386
           ++  +K
Sbjct: 137 EKLKIK 142

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 44.4 bits (105), Expect = 9e-06
 Identities = 11/83 (13%), Positives = 24/83 (28%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
            + + A         + A      + + +  NV  +            F+Q    Y  A 
Sbjct: 38  DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAF 97

Query: 376 DLLPNDQQILKEIAFVRKQMRHH 398
            L  ND   +      + +++  
Sbjct: 98  ALGKNDYTPVFHTGQCQLRLKAP 120

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.4 bits (162), Expect = 5e-12
 Identities = 20/155 (12%), Positives = 38/155 (24%), Gaps = 25/155 (16%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN-----QSQSKTQQ--KHFR------ 310
              + +        A   Y  A R     ++ +                 ++ +      
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF 471

Query: 311 SYYTAALLNMAAVQLKF-------KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
            Y    L  +  V             ++ A+ L       E          G A   +  
Sbjct: 472 QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM 531

Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
           ++  +    Q L L  ND  +   IA V    +  
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP 566

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 19/115 (16%), Positives = 38/115 (33%), Gaps = 9/115 (7%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G   F  + M  A   ++ A+  +K    ++           + A   N+     K K
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP---------WAATWANLGHAYRKLK 530

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
            Y  AI+  +  LL+  N+           +        +    ++L + PN+  
Sbjct: 531 MYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM 585

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 19/135 (14%), Positives = 43/135 (31%), Gaps = 20/135 (14%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 315
             G  Y  +N++ +A+R + K+   +       W   + S   +        +Y TA   
Sbjct: 378 AVGIYYLCVNKISEARRYFSKSST-MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL 436

Query: 316 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
                   L +    ++      A         +   +   L   G    + ++ +  + 
Sbjct: 437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN 496

Query: 370 DYEQALDLLPNDQQI 384
            ++ AL L+   Q  
Sbjct: 497 HFQNALLLVKKTQSN 511

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 14/151 (9%), Positives = 39/151 (25%), Gaps = 21/151 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR----YIKWYN-----------------QSQSKTQQK 307
             G  Y  L+    A+  YK+A+       + ++                    + +   
Sbjct: 205 LRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYS 264

Query: 308 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
              + +  +L  +   +   +   R        +     +   L  +       + F   
Sbjct: 265 KEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDV 324

Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
           L    + L++ P +  +         +    
Sbjct: 325 LAITTKILEIDPYNLDVYPLHLASLHESGEK 355

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.9 bits (114), Expect = 4e-06
 Identities = 11/126 (8%), Positives = 29/126 (23%), Gaps = 16/126 (12%)

Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
              +    +R++                   Y  ++  ++                  + 
Sbjct: 263 YSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLE----------------KSSD 306

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
            LL  A        +   + +   IL ++P N+        +        +        +
Sbjct: 307 LLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV 366

Query: 376 DLLPND 381
           D  P  
Sbjct: 367 DRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 44.1 bits (104), Expect = 7e-05
 Identities = 15/131 (11%), Positives = 25/131 (19%), Gaps = 18/131 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAV-----RYIKWYNQSQSKTQQKHF-------------R 310
              +  F  +R  D      K +         +     S  +                  
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH 369

Query: 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
                  L +    L       A         M+P    A      +       +Q +  
Sbjct: 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISA 429

Query: 371 YEQALDLLPND 381
           Y  A  L    
Sbjct: 430 YTTAARLFQGT 440

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 66.0 bits (161), Expect = 7e-12
 Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 16/139 (11%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
              +    +      +   ++ +                     +  A+  +  V+   +
Sbjct: 28  MLADAELGMGDTTAGEMAVQRGLA----------------LHPGHPEAVARLGRVRWTQQ 71

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
            +  A  L        P +       G A       E     Y +A  LLP +  I  ++
Sbjct: 72  RHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQL 131

Query: 389 AFVRKQMRHHLNLEKMTYA 407
              R+++     L+ ++  
Sbjct: 132 LNWRRRLCDWRALDVLSAQ 150

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 15/86 (17%), Positives = 27/86 (31%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
              A L +A  +L               L + P + +A+ R GR + +     +     +
Sbjct: 22  DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ 81

Query: 373 QALDLLPNDQQILKEIAFVRKQMRHH 398
           QA D  P    I   +    +     
Sbjct: 82  QASDAAPEHPGIALWLGHALEDAGQA 107

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 12/69 (17%), Positives = 24/69 (34%)

Query: 330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA 389
             R +      +   P +  A      A++ M +   G    ++ L L P   + +  + 
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 390 FVRKQMRHH 398
            VR   + H
Sbjct: 65  RVRWTQQRH 73

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 15/150 (10%), Positives = 40/150 (26%), Gaps = 18/150 (12%)

Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF--------- 309
           +  I +       L  +        +A        +   +    K   +           
Sbjct: 106 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQ 165

Query: 310 ----RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
                     A+ +    +   +  +R + +      + P  V A+   G  + ++   +
Sbjct: 166 AHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQ 225

Query: 366 QGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
           + L    QA  L P     +      ++ +
Sbjct: 226 RLLPVLCQAHGLTPQQVVAIASNGGGKQAL 255

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.0 bits (156), Expect = 3e-11
 Identities = 16/139 (11%), Positives = 39/139 (28%), Gaps = 18/139 (12%)

Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY-- 312
           +  I +       L  +        +A        +   +    K   +  +        
Sbjct: 344 VVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ 403

Query: 313 -------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
                     A+ +    +   +  +R + +      + P  V A+   G  + ++ +  
Sbjct: 404 AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGRPALESIV 463

Query: 366 QGLQDYEQALDLLPNDQQI 384
             L   + AL  L ND  +
Sbjct: 464 AQLSRPDPALAALTNDHLV 482

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 18/147 (12%)

Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY----- 312
           I ++G     L  +        +A        +   +    K   +  +           
Sbjct: 177 IASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHG 236

Query: 313 ----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
                  A+ +    +   +  +R + +      + P  V A+      + ++   ++ L
Sbjct: 237 LTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLL 296

Query: 369 QDYEQALDLLPNDQQILKEIAFVRKQM 395
               QA  L P     +      ++ +
Sbjct: 297 PVLCQAHGLTPQQVVAIASNGGGKQAL 323

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 7e-10
 Identities = 15/148 (10%), Positives = 41/148 (27%), Gaps = 18/148 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY------- 312
           ++G     L  +        +A        +   + S  K   +  +             
Sbjct: 247 SNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLT 306

Query: 313 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
                A+ +    +   +  +R + +      + P  V A+      + ++   ++ L  
Sbjct: 307 PQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPV 366

Query: 371 YEQALDLLPNDQQILKEIAFVRKQMRHH 398
             QA  L P     +      ++ +   
Sbjct: 367 LCQAHGLTPEQVVAIASNGGGKQALETV 394

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 14/145 (9%), Positives = 40/145 (27%), Gaps = 18/145 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY------- 312
           ++      L  +        +A        +   +    K   +  +             
Sbjct: 281 SNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLT 340

Query: 313 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
                A+ +    +   +  +R + +      + P  V A+   G  + ++   ++ L  
Sbjct: 341 PQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPV 400

Query: 371 YEQALDLLPNDQQILKEIAFVRKQM 395
             QA  L P     +      ++ +
Sbjct: 401 LCQAHGLTPEQVVAIASHDGGKQAL 425

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.5 bits (139), Expect = 4e-09
 Identities = 10/86 (11%), Positives = 28/86 (32%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
              A+ +    +   +  +R + +      + P  V A+      + ++   ++ L    
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 373 QALDLLPNDQQILKEIAFVRKQMRHH 398
           QA  L P     +      ++ +   
Sbjct: 131 QAHGLTPEQVVAIASHDGGKQALETV 156

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 14/122 (11%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
               +    A    ++    +    Q+   T Q         A+ +    +   +  +R 
Sbjct: 75  IASHDGGKQALETVQRL---LPVLCQAHGLTPQ------QVVAIASHDGGKQALETVQRL 125

Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393
           + +      + P  V A+      + ++   +  L    QA  L P     +      ++
Sbjct: 126 LPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNGGGKQ 185

Query: 394 QM 395
            +
Sbjct: 186 AL 187

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 41.7 bits (98), Expect = 4e-04
 Identities = 11/84 (13%), Positives = 24/84 (28%)

Query: 312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY 371
                +     V      +     L    L + P  V A+      + ++   ++ L   
Sbjct: 36  GQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVL 95

Query: 372 EQALDLLPNDQQILKEIAFVRKQM 395
            QA  L P     +      ++ +
Sbjct: 96  CQAHGLTPQQVVAIASHDGGKQAL 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 60.9 bits (148), Expect = 2e-11
 Identities = 15/113 (13%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G   ++  +  DAQ+ ++                       Y     L + A +    
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCML----------------DHYDARYFLGLGACRQSLG 66

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
            Y++A+       LM+ N  +  F      + + + +     +  A  L    
Sbjct: 67  LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQ 119

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 44.3 bits (105), Expect = 7e-06
 Identities = 13/83 (15%), Positives = 30/83 (36%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
            L  +   Q +   +  A  +   + +++  + +     G  + S+  +EQ LQ Y    
Sbjct: 20  QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGA 79

Query: 376 DLLPNDQQILKEIAFVRKQMRHH 398
            +  N+ +     A    Q+   
Sbjct: 80  LMDINEPRFPFHAAECHLQLGDL 102

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 25/123 (20%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G   F+      A++ +  A+  IK      +  +       +   L N+  V  K K
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK-------WEPLLNNLGHVCRKLK 250

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
            Y  A++     L++ P N       G     M NFE  +  +  AL L  +D   +  +
Sbjct: 251 KYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTML 310

Query: 389 AFV 391
              
Sbjct: 311 GHC 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 19/154 (12%), Positives = 43/154 (27%), Gaps = 27/154 (17%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYN-----QSQSKTQQ--KHFR------ 310
             G+ +   +    A   Y  A +     ++            + ++   + F       
Sbjct: 130 AYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIA 189

Query: 311 SYYTAALLNMAAVQLK-------FKAYKRAINLCDDIL--LMEPNNVKALFRRGRAQVSM 361
                 +  +  V  +        K +  A+     I   +        L   G     +
Sbjct: 190 PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKL 249

Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
             + + L  + QAL L+P +      I ++   M
Sbjct: 250 KKYAEALDYHRQALVLIPQNASTYSAIGYIHSLM 283

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 51.1 bits (123), Expect = 2e-07
 Identities = 19/134 (14%), Positives = 39/134 (29%), Gaps = 21/134 (15%)

Query: 269 NSGNEYFKLNRMHD-AQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA-- 315
             G  Y  +   ++ A+R   KA   ++      W     S   +        +Y+TA  
Sbjct: 95  AVGCYYLMVGHKNEHARRYLSKATT-LEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ 153

Query: 316 -------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGL 368
                   +L +          K A       L + P +   +   G        ++   
Sbjct: 154 LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAE 213

Query: 369 QDYEQALDLLPNDQ 382
           + +  AL+ +    
Sbjct: 214 KWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 10/66 (15%), Positives = 25/66 (37%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
            ++++A        +K    L   ++  +P +   L       V +N   +      + +
Sbjct: 24  VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLV 83

Query: 376 DLLPND 381
           DL P++
Sbjct: 84  DLYPSN 89

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 31/153 (20%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 244 FPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSK 303
           F E    N E  +L   E +  +++++G   F  N    A    KKA+            
Sbjct: 219 FEEQLDKNNEDEKLK--EKLAISLEHTGIFKFLKNDPLGAHEDIKKAIEL---------- 266

Query: 304 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
                  SY       MA +           N  D  L ++ NN    + RG+    + N
Sbjct: 267 --FPRVNSYI-----YMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQN 319

Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR 396
           ++Q  +D+++A +L P +     ++A +  +  
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYREN 352

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 62.1 bits (151), Expect = 1e-10
 Identities = 20/161 (12%), Positives = 55/161 (34%), Gaps = 28/161 (17%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF----RSY------- 312
                 ++ N+  D +  + +A R            ++  T +  F    + Y       
Sbjct: 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELE 402

Query: 313 --YTAALLNMAAVQLKFKA---------YKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
                  + +A +  K            +  A NL +    ++P + +A     + ++  
Sbjct: 403 NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462

Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE 402
            + ++ +  +E++ DL    ++ L+ I F  +  +    + 
Sbjct: 463 EDIDEAITLFEESADLARTMEEKLQAITF-AEAAKVQQRIR 502

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 24/118 (20%), Positives = 46/118 (38%), Gaps = 18/118 (15%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K+ GN++F+  +  DA + Y  A+             ++            N++A  +  
Sbjct: 10  KDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDP------VFYSNLSACYVSV 52

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ-ALDLLPNDQQI 384
              K+ + +    L ++P+  K L RR  A   +  F   + D    +L+   ND  I
Sbjct: 53  GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASI 110

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 16/115 (13%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
             S   +F + +       Y ++    K      S   ++   SY  A      A     
Sbjct: 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA---- 216

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
           + ++  ++  ++   ++     +L   G  +   N+     +D ++A++L P   
Sbjct: 217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN 271

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 15/132 (11%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR---SYYTAAL-- 317
                    N   +    + KA++ +       +Y++ Q     +++      +  A   
Sbjct: 275 YMALIMADRNDSTEYYNYFDKALK-LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL 333

Query: 318 --------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
                   + +A +  +   +     L  +     P   +            N+F++ L+
Sbjct: 334 DPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALK 393

Query: 370 DYEQALDLLPND 381
            Y+ A++L    
Sbjct: 394 QYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 54.4 bits (131), Expect = 4e-08
 Identities = 21/154 (13%), Positives = 45/154 (29%), Gaps = 27/154 (17%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 317
           + G   F L     A + + KA          +   +    ++  F    + ++ A    
Sbjct: 309 HRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF 368

Query: 318 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA---------QVSM 361
                     A +      + +A+   D  + +E                        ++
Sbjct: 369 PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTV 428

Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
            NF +     E+A  L P  +Q    +A ++ Q 
Sbjct: 429 ENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQ 462

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
           Y  AL +      + K Y  AI   +  L ++ + V          VS+ + ++ ++   
Sbjct: 5   YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPV-FYSNLSACYVSVGDLKKVVEMST 63

Query: 373 QALDLLPNDQQILKEIAFVRKQM 395
           +AL+L P+  ++L   A   + +
Sbjct: 64  KALELKPDYSKVLLRRASANEGL 86

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 61.7 bits (150), Expect = 3e-11
 Identities = 19/123 (15%), Positives = 39/123 (31%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
              +   +  +   A   +++ +       +    T         +     +A    K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
            Y +A     ++L   PNNV  L      QV     +  L+ YE+ L L  ++      +
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 389 AFV 391
              
Sbjct: 129 GNY 131

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 59.4 bits (144), Expect = 2e-10
 Identities = 19/130 (14%), Positives = 44/130 (33%), Gaps = 19/130 (14%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA-AVQLKF 327
                     +  DA R Y+K ++                  +   AA + +     L  
Sbjct: 93  ACAEMQVCRGQEKDALRMYEKILQ----------------LEADNLAANIFLGNYYYLTA 136

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQIL 385
           +  K+ +      L        A +R G +++    +E+     ++ +   P+   Q+ L
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL 196

Query: 386 KEIAFVRKQM 395
            +I  + K++
Sbjct: 197 DKILRIEKEV 206

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.4 bits (131), Expect = 9e-09
 Identities = 24/151 (15%), Positives = 50/151 (33%), Gaps = 10/151 (6%)

Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKH 308
             N +  ++    +V +  + S     +L   +   R Y KA     +Y +   K     
Sbjct: 32  ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA---YLFYKELLQK----- 83

Query: 309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA-QVSMNNFEQG 367
                   L   A +Q+     K A+ + + IL +E +N+ A    G    ++    ++ 
Sbjct: 84  -APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKK 142

Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
           L+   + L      Q         +     +
Sbjct: 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRY 173

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 16/96 (16%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRR----------------GRAQV 359
            +L   +  ++     +A++     + +  +  +  +                    A  
Sbjct: 6   EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65

Query: 360 SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
              N+++    Y++ L   PN+   L+  A ++   
Sbjct: 66  KNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCR 101

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 59.5 bits (144), Expect = 9e-11
 Identities = 22/176 (12%), Positives = 54/176 (30%), Gaps = 30/176 (17%)

Query: 238 QDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNS--------------GNEYFKLNRMHDA 283
           Q V   +        +       E  ++ +++               G  Y   N   ++
Sbjct: 4   QAVRAEYQRQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNS 63

Query: 284 QRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM 343
              Y++A++          + +     +     L   A          +   + D  L +
Sbjct: 64  LLAYRQALQL---------RGENAELYAALATVLYYQA----SQHMTAQTRAMIDKALAL 110

Query: 344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEIAFVRKQMR 396
           + N + AL           N+ Q ++ +++ +DL        Q+++ I   +   R
Sbjct: 111 DSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQR 166

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 17/140 (12%), Positives = 42/140 (30%), Gaps = 13/140 (9%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 322
                         A ++Y  A R ++               +             +   
Sbjct: 383 FFAEILTDRGDFDTAIKQYDIAKR-LEEVQEKIHVGIGPLIGKATILARQS-----SQDP 436

Query: 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
            QL  + +  AI L      ++P + +A     + ++ M   ++ ++ +E +  L     
Sbjct: 437 TQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMD 496

Query: 383 QILKEIAFVRKQMRHHLNLE 402
           + L+   F  +  +    L 
Sbjct: 497 EKLQATTF-AEAAKIQKRLR 515

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 30/156 (19%), Positives = 57/156 (36%), Gaps = 17/156 (10%)

Query: 258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAAL 317
           +Q +     +KN GN +F     ++A + Y+ A+           +        Y     
Sbjct: 19  SQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAI-----------ELDPNEPVFYS---- 63

Query: 318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
            N++A  +     ++ I      L ++P++ KAL RR  A  S+ NF   + D    L L
Sbjct: 64  -NISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSL 121

Query: 378 LPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG 413
             +      E    R   +  + +     ++    G
Sbjct: 122 NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRG 157

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 17/128 (13%), Positives = 44/128 (34%), Gaps = 17/128 (13%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
             +G  +F  N + DAQ   ++++                   SY       +A      
Sbjct: 247 CYTGIFHFLKNNLLDAQVLLQESINL------------HPTPNSYI-----FLALTLADK 289

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           +  +         + + P      + RG+    + +++   +D+++A  L P +     +
Sbjct: 290 ENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQ 349

Query: 388 IAFVRKQM 395
           +A +  + 
Sbjct: 350 LACLLYKQ 357

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 17/110 (15%), Positives = 37/110 (33%), Gaps = 5/110 (4%)

Query: 286 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345
            +           Q +  +  +  R  Y   L N        K +  AI      + ++P
Sbjct: 2   SHMNG---EPDIAQLKGLSPSQ--RQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP 56

Query: 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
           N            +S  + E+ ++   +AL++ P+  + L   A   + +
Sbjct: 57  NEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESL 106

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 16/144 (11%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           + G  YF L    +A+  ++KA                           + +A +  K  
Sbjct: 315 HRGQMYFILQDYKNAKEDFQKAQSL----------------NPENVYPYIQLACLLYKQG 358

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
            +  +    ++  L  P   +             +F+  ++ Y+ A  L    ++I   I
Sbjct: 359 KFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGI 418

Query: 389 AFVRKQMRHHLNLEKMTYARMFQN 412
             +  +             ++ + 
Sbjct: 419 GPLIGKATILARQSSQDPTQLDEE 442

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 53.6 bits (129), Expect = 6e-08
 Identities = 14/130 (10%), Positives = 33/130 (25%), Gaps = 8/130 (6%)

Query: 261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ--------SKTQQKHFRSY 312
           E++ +              +      +   +        S         S   Q+ + + 
Sbjct: 148 ENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSAT 207

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
               L+    +      Y   ++       +  N   AL   G      NN        +
Sbjct: 208 DEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQ 267

Query: 373 QALDLLPNDQ 382
           ++++L P   
Sbjct: 268 ESINLHPTPN 277

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 61.2 bits (148), Expect = 4e-10
 Identities = 16/142 (11%), Positives = 42/142 (29%), Gaps = 18/142 (12%)

Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY 312
           D +  I ++      L  +        +A        +   +    K   +  +      
Sbjct: 258 DQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVL 317

Query: 313 ---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
                       A+ +    +   +  +R + +      + P+ V A+   G  + ++  
Sbjct: 318 CQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALET 377

Query: 364 FEQGLQDYEQALDLLPNDQQIL 385
            ++ L    QA  L P+    +
Sbjct: 378 VQRLLPVLCQAHGLTPDQVVAI 399

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 12/145 (8%), Positives = 38/145 (26%), Gaps = 18/145 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYI-----KWYNQSQSKTQQKHFR----SY------- 312
           ++      L  +        +A            +    K   +  +             
Sbjct: 604 SNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLT 663

Query: 313 --YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
                A+ +    +   +  +R + +      +    V A+      + ++   ++ L  
Sbjct: 664 PDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPV 723

Query: 371 YEQALDLLPNDQQILKEIAFVRKQM 395
             QA  L P+    +      ++ +
Sbjct: 724 LCQAHGLTPDQVVAIASNGGGKQAL 748

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 56.6 bits (136), Expect = 9e-09
 Identities = 16/152 (10%), Positives = 44/152 (28%), Gaps = 18/152 (11%)

Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY 312
           D +  I ++G     L  +        +A        +   +    K   +  +      
Sbjct: 529 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVL 588

Query: 313 ---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
                       A+ +    +   +  +R + +      + P  V A+      + ++  
Sbjct: 589 CQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALET 648

Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
            ++ L    QA  L P+    +      ++ +
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 680

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 1e-08
 Identities = 15/155 (9%), Positives = 42/155 (27%), Gaps = 18/155 (11%)

Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR----SY 312
             +  I +       L  M        +A        +   +    K   +  +      
Sbjct: 224 AQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL 283

Query: 313 ---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN 363
                       A+ +    +   +  +R + +      + P+ V A+      + ++  
Sbjct: 284 CQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALET 343

Query: 364 FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
            ++ L    QA  L P+    +      ++ +   
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETV 378

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 13/134 (9%), Positives = 38/134 (28%), Gaps = 16/134 (11%)

Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 321
             +  I ++      L  +        +A                         A+ +  
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG----------------LTPAQVVAIASHD 233

Query: 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
             +   +  +R + +      + P+ V A+      + ++   ++ L    QA  L P+ 
Sbjct: 234 GGKQALETMQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

Query: 382 QQILKEIAFVRKQM 395
              +      ++ +
Sbjct: 294 VVAIASHGGGKQAL 307

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.7 bits (126), Expect = 1e-07
 Identities = 17/154 (11%), Positives = 44/154 (28%), Gaps = 17/154 (11%)

Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQ---QKHFRSY- 312
           D +  I ++G     L  +        +A        +   +    +     Q+      
Sbjct: 360 DQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLC 419

Query: 313 --------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 364
                      A+ +    +   +  +R + +      + P  V A+      + ++   
Sbjct: 420 QAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETV 479

Query: 365 EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
           +Q L    QA  L P+    +      ++ +   
Sbjct: 480 QQLLPVLCQAHGLTPDQVVAIASNIGGKQALATV 513

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 7e-07
 Identities = 14/132 (10%), Positives = 37/132 (28%), Gaps = 16/132 (12%)

Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 323
           +  I +       L  +        +A                         A+ +    
Sbjct: 463 VVAIASHDGGKQALETVQQLLPVLCQAHG----------------LTPDQVVAIASNIGG 506

Query: 324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ 383
           +      +R + +      + P+ V A+   G  + ++   ++ L    QA  L P+   
Sbjct: 507 KQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

Query: 384 ILKEIAFVRKQM 395
            +      ++ +
Sbjct: 567 AIASNGGGKQAL 578

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 8e-07
 Identities = 15/119 (12%), Positives = 35/119 (29%), Gaps = 16/119 (13%)

Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
           I ++G     L  +        +A                         A+ +    +  
Sbjct: 670 IASNGGGKQALETVQRLLPVLCQAHG----------------LTQEQVVAIASNNGGKQA 713

Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
            +  +R + +      + P+ V A+   G  + ++   ++ L    QA  L P     +
Sbjct: 714 LETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPAQVVAI 772

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.0 bits (119), Expect = 1e-06
 Identities = 10/85 (11%), Positives = 28/85 (32%)

Query: 299 QSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQ 358
           ++       +       A+ +    +   +  +R + +      + P  V A+      +
Sbjct: 177 RNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGK 236

Query: 359 VSMNNFEQGLQDYEQALDLLPNDQQ 383
            ++   ++ L    QA  L P+   
Sbjct: 237 QALETMQRLLPVLCQAHGLPPDQVV 261

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.6 bits (110), Expect = 1e-05
 Identities = 12/114 (10%), Positives = 31/114 (27%), Gaps = 9/114 (7%)

Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
               N    A    ++    +    Q+   T           A+ +    +   +  +R 
Sbjct: 704 IASNNGGKQALETVQRL---LPVLCQAHGLTPD------QVVAIASNGGGKQALETVQRL 754

Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           + +      + P  V A+      + ++   ++ L    Q   L       +  
Sbjct: 755 LPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIAS 808

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 46.2 bits (109), Expect = 2e-05
 Identities = 12/113 (10%), Positives = 37/113 (32%), Gaps = 9/113 (7%)

Query: 283 AQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL 342
           A    ++    +    Q+   T           A+ +    +   +  ++ + +      
Sbjct: 441 ALETVQRL---LPVLCQTHGLTPA------QVVAIASHDGGKQALETVQQLLPVLCQAHG 491

Query: 343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM 395
           + P+ V A+      + ++   ++ L    QA  L P+    +      ++ +
Sbjct: 492 LTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNGGGKQAL 544

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 43.9 bits (103), Expect = 9e-05
 Identities = 12/117 (10%), Positives = 32/117 (27%), Gaps = 10/117 (8%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           +             A    ++ +             Q          A+ +    +   +
Sbjct: 835 DQVVAIASNIGGKQALETVQRLL---------PVLCQDHGLTPDQVVAIASNIGGKQALE 885

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
             +R + +      +  + V A+   G  Q ++   ++ L    Q   L P+    +
Sbjct: 886 TVQRLLPVLCQDHGLTLDQVVAIASNGGKQ-ALETVQRLLPVLCQDHGLTPDQVVAI 941

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 41.6 bits (97), Expect = 4e-04
 Identities = 11/88 (12%), Positives = 25/88 (28%)

Query: 308 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
              +     +     V      +     L    L + P  V A+      + ++   ++ 
Sbjct: 152 QLDTGQLVKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVAIASNNGGKQALETVQRL 211

Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQM 395
           L    QA  L P     +      ++ +
Sbjct: 212 LPVLCQAHGLTPAQVVAIASHDGGKQAL 239

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 18/148 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFR---SYYTAAL--- 317
              +  ++      A+R   +  R            S    Q +       + T A+   
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 318 -------LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
                   N+  V  +    + AI      L ++P+ +        A V+  + E  +Q 
Sbjct: 64  PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQA 123

Query: 371 YEQALDLLPNDQQILKEIAFVRKQMRHH 398
           Y  AL   P+   +  ++  + K +   
Sbjct: 124 YVSALQYNPDLYCVRSDLGNLLKALGRL 151

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.9 bits (141), Expect = 2e-09
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 20/146 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
           N    Y++   +  A   Y++A+  ++      + N + +  ++         Y      
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIE-LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL 300

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
              +  +L N+A ++ +    + A+ L    L + P    A              ++ L 
Sbjct: 301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 360

Query: 370 DYEQALDLLPNDQQILKEIAFVRKQM 395
            Y++A+ + P        +    K+M
Sbjct: 361 HYKEAIRISPTFADAYSNMGNTLKEM 386

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 16/132 (12%), Positives = 40/132 (30%), Gaps = 18/132 (13%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHF------------- 309
               + +F+  R+  +      A++        + N      ++                
Sbjct: 37  LLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL 96

Query: 310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
           +  +    +N+AA  +     + A+      L   P+        G    ++   E+   
Sbjct: 97  KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156

Query: 370 DYEQALDLLPND 381
            Y +A++  PN 
Sbjct: 157 CYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 56.0 bits (136), Expect = 7e-09
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 20/146 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
           N GN   +      A   Y +A+  +         N +    +Q        +Y      
Sbjct: 208 NLGNVLKEARIFDRAVAAYLRALS-LSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
              +  A  N+A    +  +   A +  +  L + P +  +L      +    N E+ ++
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 370 DYEQALDLLPNDQQILKEIAFVRKQM 395
            Y +AL++ P        +A V +Q 
Sbjct: 327 LYRKALEVFPEFAAAHSNLASVLQQQ 352

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 22/132 (16%), Positives = 46/132 (34%), Gaps = 20/132 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSYYTA--- 315
           N GN Y +  ++ +A   Y+ A+R +K      + N + +           ++Y +A   
Sbjct: 72  NLGNVYKERGQLQEAIEHYRHALR-LKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY 130

Query: 316 ------ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
                    ++  +       + A       +  +PN   A    G    +       + 
Sbjct: 131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIH 190

Query: 370 DYEQALDLLPND 381
            +E+A+ L PN 
Sbjct: 191 HFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 24/149 (16%), Positives = 43/149 (28%), Gaps = 20/149 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
           N          M  A + Y  A++           +                 Y      
Sbjct: 106 NLAAALVAAGDMEGAVQAYVSALQ-YNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
              +  A  N+  V         AI+  +  + ++PN + A    G        F++ + 
Sbjct: 165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVA 224

Query: 370 DYEQALDLLPNDQQILKEIAFVRKQMRHH 398
            Y +AL L PN   +   +A V  +    
Sbjct: 225 AYLRALSLSPNHAVVHGNLACVYYEQGLI 253

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 20/132 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
           + GN    L R+ +A+  Y KA+   +      W N       Q         +      
Sbjct: 140 DLGNLLKALGRLEEAKACYLKAIE-TQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
              +  A +N+  V  + + + RA+      L + PN+                 +  + 
Sbjct: 199 DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAID 258

Query: 370 DYEQALDLLPND 381
            Y +A++L P+ 
Sbjct: 259 TYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 54.1 bits (131), Expect = 3e-08
 Identities = 11/79 (13%), Positives = 25/79 (31%)

Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
            + +A  + +   ++ A   C  +   EP+N   L             ++       A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 377 LLPNDQQILKEIAFVRKQM 395
             P   +    +  V K+ 
Sbjct: 62  QNPLLAEAYSNLGNVYKER 80

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
           N G  +     +  A   ++KAV  +       + N      + + F     +Y      
Sbjct: 174 NLGCVFNAQGEIWLAIHHFEKAVT-LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
              +     N+A V  +      AI+     + ++P+   A      A     +  +   
Sbjct: 233 SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAED 292

Query: 370 DYEQALDLLPND 381
            Y  AL L P  
Sbjct: 293 CYNTALRLCPTH 304

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 17/136 (12%), Positives = 41/136 (30%), Gaps = 17/136 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 323
             G  Y+       A   + K +      YI +  ++++   Q        A        
Sbjct: 147 ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLA-------- 198

Query: 324 QLKFKAYKRAINLC-DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ 382
                 Y++ I +C       +   ++A            +  +    ++  L L P ++
Sbjct: 199 ---KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

Query: 383 QILKEIAFVRKQMRHH 398
           + +  +    +   HH
Sbjct: 256 KAIDGLKMKLEHHHHH 271

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 17/113 (15%), Positives = 33/113 (29%), Gaps = 13/113 (11%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
                Y++L        KY  A + I+ Y    +           +A       + +K  
Sbjct: 42  RRAVCYYELA-------KYDLAQKDIETYFSKVNA------TKAKSADFEYYGKILMKKG 88

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
               AI      +  +   +    + G    +  NF   +Q  E+ +     D
Sbjct: 89  QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTD 141

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 16/122 (13%), Positives = 35/122 (28%), Gaps = 19/122 (15%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
              G+ ++       A +  +K +R                  +        +       
Sbjct: 112 GQIGSYFYNKGNFPLAIQYMEKQIR----------------PTTTDPKVFYELGQAYYYN 155

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNN---FEQGLQDYEQALDLLPNDQQI 384
           K Y +A +    +L ++PN       R RA  + +           YE+ +++       
Sbjct: 156 KEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAK 215

Query: 385 LK 386
            K
Sbjct: 216 YK 217

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 15/130 (11%), Positives = 29/130 (22%), Gaps = 19/130 (14%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
              +  FK N   +A   + K               +      Y        A    +  
Sbjct: 8   RYADFLFKNNNYAEAIEVFNKLE-----------AKKYNSPYIYN-----RRAVCYYELA 51

Query: 329 AYKRAINLCDD---ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL 385
            Y  A    +     +             G+  +        +Q Y+ A+D       + 
Sbjct: 52  KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY 111

Query: 386 KEIAFVRKQM 395
            +I       
Sbjct: 112 GQIGSYFYNK 121

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD---YE 372
                A    K   Y  AI + + +   + N+     RR      +  ++   +D   Y 
Sbjct: 5   VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYF 64

Query: 373 QALDLLPND 381
             ++     
Sbjct: 65  SKVNATKAK 73

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 24/130 (18%), Positives = 46/130 (35%), Gaps = 16/130 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N  N   +   + +A R Y+KA+                     + AA  N+A+V  +  
Sbjct: 14  NLANIKREQGNIEEAVRLYRKALEV----------------FPEFAAAHSNLASVLQQQG 57

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
             + A+    + + + P    A    G     M + +  LQ Y +A+ + P        +
Sbjct: 58  KLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNL 117

Query: 389 AFVRKQMRHH 398
           A + K   + 
Sbjct: 118 ASIHKDSGNI 127

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 19/127 (14%), Positives = 39/127 (30%), Gaps = 16/127 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N  +   +  ++ +A   YK+A+R                    +  A  NM     + +
Sbjct: 48  NLASVLQQQGKLQEALMHYKEAIR----------------ISPTFADAYSNMGNTLKEMQ 91

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
             + A+      + + P    A            N  + +  Y  AL L P+       +
Sbjct: 92  DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNL 151

Query: 389 AFVRKQM 395
           A   + +
Sbjct: 152 AHCLQIV 158

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 14/86 (16%), Positives = 32/86 (37%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
           +  +L N+A ++ +    + A+ L    L + P    A              ++ L  Y+
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 67

Query: 373 QALDLLPNDQQILKEIAFVRKQMRHH 398
           +A+ + P        +    K+M+  
Sbjct: 68  EAIRISPTFADAYSNMGNTLKEMQDV 93

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 52.1 bits (126), Expect = 7e-08
 Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 20/149 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 312
            +GN Y       +A+  ++KA+R         +Y       + +  +            
Sbjct: 96  GAGNVYVVKEMYKEAKDMFEKALR-AGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL 154

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
               T A                A++    +   +P +  A +  G       N E+ L+
Sbjct: 155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALE 214

Query: 370 DYEQALDLLPNDQQILKEIAFVRKQMRHH 398
             ++A+D+ P+    L     +     HH
Sbjct: 215 MLDKAIDIQPDHMLALHAKKLLGHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 18/132 (13%), Positives = 42/132 (31%), Gaps = 20/132 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFR----SY------ 312
           N  N    +N +  A   Y KA+  +       +Y        ++ ++     +      
Sbjct: 62  NFANLLSSVNELERALAFYDKALE-LDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA 120

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
                     +  V +K +  K A+      + +  N+ +A F+ G    +    ++ L 
Sbjct: 121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALS 180

Query: 370 DYEQALDLLPND 381
            +    +  P  
Sbjct: 181 QFAAVTEQDPGH 192

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 49.8 bits (120), Expect = 4e-07
 Identities = 22/151 (14%), Positives = 41/151 (27%), Gaps = 23/151 (15%)

Query: 249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSK 303
              P    +  M               +      A   + KA+       I + N +   
Sbjct: 13  GLVPRGSHMASMTGG-----QQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 304 TQQKHF----RSY---------YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKA 350
           +           Y            A      V +  + YK A ++ +  L     N   
Sbjct: 68  SSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDL 127

Query: 351 LFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
            +  G   V +   +  L   ++A++L  ND
Sbjct: 128 FYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.9 bits (122), Expect = 1e-07
 Identities = 20/116 (17%), Positives = 38/116 (32%), Gaps = 19/116 (16%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N G               +K A   +  ++      Q  H R  +     N+  +    K
Sbjct: 11  NEGVLAADKK-------DWKGA---LDAFS----AVQDPHSRICF-----NIGCMYTILK 51

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
               A       +  + +   A F+RG        ++  ++D ++AL  L  +Q I
Sbjct: 52  NMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI 107

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 18/144 (12%), Positives = 43/144 (29%), Gaps = 34/144 (23%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N G  Y  L  M +A++ + +++                    +   A      +  + +
Sbjct: 42  NIGCMYTILKNMTEAEKAFTRSIN----------------RDKHLAVAYFQRGMLYYQTE 85

Query: 329 AYKRAINLCDD-ILLMEPNNV---------------KALFRRGRAQVSMNNFEQGLQDYE 372
            Y  AI    + ++ +  N +               + L+           +++  +   
Sbjct: 86  KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 145

Query: 373 QALDLLPNDQQ--ILKEIAFVRKQ 394
            A  +    +   I K +  V KQ
Sbjct: 146 LATSMKSEPRHSKIDKAMECVWKQ 169

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 15/113 (13%), Positives = 30/113 (26%), Gaps = 14/113 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N G   ++  R  +A ++  +A               Q       +    N+  V L+ K
Sbjct: 110 NYGGFLYEQKRYEEAYQRLLEAS--------------QDTLYPERSRVFENLGLVSLQMK 155

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
              +A    +  L +  N                 +    Q Y+        +
Sbjct: 156 KPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN 208

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 25/151 (16%), Positives = 50/151 (33%), Gaps = 22/151 (14%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 310
             G  Y +      A+   +KA+  I               Q++ + +   + +R     
Sbjct: 42  QLGLGYLQRGNTEQAKVPLRKALE-IDPSSADAHAALAVVFQTEMEPKLADEEYRKALAS 100

Query: 311 -SYYTAALLNMAAVQLKFKAYKRAINLCDDIL--LMEPNNVKALFRRGRAQVSMNNFEQG 367
            S     L N      + K Y+ A     +     + P   +     G   + M    Q 
Sbjct: 101 DSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160

Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
            + +E++L L  N   +  E+A +  + R +
Sbjct: 161 KEYFEKSLRLNRNQPSVALEMADLLYKEREY 191

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 49.1 bits (117), Expect = 2e-07
 Identities = 17/137 (12%), Positives = 36/137 (26%), Gaps = 21/137 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           +     ++     DA   ++                       Y +   L + A +    
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSRFFLGLGACRQAMG 69

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILK 386
            Y  AI+      +M+    +  F      +      +       A +L+ N  +   L 
Sbjct: 70  QYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELS 129

Query: 387 EIAFVRKQMRHHLNLEK 403
                   M   + L+K
Sbjct: 130 TRV---SSMLEAIKLKK 143

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 47.2 bits (112), Expect = 9e-07
 Identities = 9/74 (12%), Positives = 28/74 (37%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
            L ++A  Q +   Y+ A  +   + +++  + +     G  + +M  ++  +  Y    
Sbjct: 23  QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGA 82

Query: 376 DLLPNDQQILKEIA 389
            +   + +     A
Sbjct: 83  VMDIXEPRFPFHAA 96

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 12/99 (12%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 286 KYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP 345
              +A   + +Y ++                 L + +       Y++A  +  + +   P
Sbjct: 5   LEAQA---VPYYEKAI---ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP 58

Query: 346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
           N+            ++  +EQG++   + +    +D+ I
Sbjct: 59  NHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETI 97

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 9/62 (14%), Positives = 19/62 (30%), Gaps = 4/62 (6%)

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
             Y++AI       L   +  +     G    ++  + +        +   PN Q +   
Sbjct: 11  PYYEKAIASG----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF 66

Query: 388 IA 389
            A
Sbjct: 67  YA 68

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 13/145 (8%)

Query: 264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV 323
           + T  N    Y+ + R+ D Q    K     + ++          +R             
Sbjct: 94  LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS--------SPYRIESPELDCEEGWT 145

Query: 324 QLKF--KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF---EQGLQDYEQALDLL 378
           +LK      +RA    +  L  +P N +       A   ++N+   +  +    QA+ L 
Sbjct: 146 RLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205

Query: 379 PNDQQILKEIAFVRKQMRHHLNLEK 403
           P++Q +   +A    +MR     E 
Sbjct: 206 PDNQYLKVLLALKLHKMREEGEEEG 230

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.7 bits (108), Expect = 2e-05
 Identities = 17/142 (11%), Positives = 47/142 (33%), Gaps = 13/142 (9%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
            +           +A    ++A+R               +       AL  +  ++ + +
Sbjct: 180 IASYRLDNWPPSQNAIDPLRQAIRL-----------NPDNQYLKVLLALK-LHKMREEGE 227

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
                  L ++ L   P     L    +     +  ++ ++  ++AL+ +PN+  +  +I
Sbjct: 228 EEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQI 287

Query: 389 AFV-RKQMRHHLNLEKMTYARM 409
               R ++   +NL +      
Sbjct: 288 GCCYRAKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 11/131 (8%), Positives = 34/131 (25%), Gaps = 9/131 (6%)

Query: 257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR----YIKWYNQ--SQSKTQQKHFR 310
           L +   V   ++++   Y + +    A    KKA+         + Q     + +     
Sbjct: 240 LEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVM 299

Query: 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
           +     +     +    +    A+           N  +            + +E+    
Sbjct: 300 NLRENGMYGKRKLL---ELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYY 356

Query: 371 YEQALDLLPND 381
           +++        
Sbjct: 357 FQKEFSKELTP 367

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 15/125 (12%), Positives = 35/125 (28%), Gaps = 12/125 (9%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS------KTQQKHFRSYYTAALLNMAA 322
              + +   ++  +A+  ++K           Q         Q    +    A    +  
Sbjct: 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEG 398

Query: 323 VQLK------FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
           V++        K   +   +    L     + +AL      Q      +Q  +D E+ L+
Sbjct: 399 VKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLE 458

Query: 377 LLPND 381
                
Sbjct: 459 SGSLI 463

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 20/157 (12%), Positives = 36/157 (22%), Gaps = 33/157 (21%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-----QSQSKTQQ--KHFR----- 310
               EY +      A    + A++         W       Q      +  + FR     
Sbjct: 13  QLAMEYMRGQDYRQATASIEDALK-SDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSI 71

Query: 311 -SYYTAALLNMAAV---QLK-----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
                    N       +L         + +A+          P    A   +G      
Sbjct: 72  KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTY-----PTPYIANLNKGICSAKQ 126

Query: 362 NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH 398
             F       +++L   P      KE+A  +      
Sbjct: 127 GQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 18/135 (13%), Positives = 30/135 (22%), Gaps = 23/135 (17%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN----------------QSQSKTQQ 306
                Y  L     AQ  +++A+  IK        N                    K   
Sbjct: 47  VRAEIYQYLKVNDKAQESFRQALS-IKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA 105

Query: 307 KHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
                    A LN      K   +  A       L  +P    A     R ++       
Sbjct: 106 DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165

Query: 367 GLQDYEQALDLLPND 381
               +++    +   
Sbjct: 166 ADYYFKKYQSRVEVL 180

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 15/122 (12%), Positives = 42/122 (34%), Gaps = 14/122 (11%)

Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
             KL+R+  A+++ KK                +    +    A +++A      +  + A
Sbjct: 140 LLKLDRLDLARKELKKMQDQ-----------DEDATLTQLATAWVSLA---AGGEKLQDA 185

Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK 393
             +  ++       +  L  +    ++   +E      ++ALD      + L  +  + +
Sbjct: 186 YYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ 245

Query: 394 QM 395
            +
Sbjct: 246 HL 247

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 19/132 (14%), Positives = 40/132 (30%), Gaps = 20/132 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
           + G  + K  R   A    ++              +   +  +                 
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYD-ADAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD 71

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
                     +    ++ + Y  A+ L   +    P N    FR G A  ++  F++ + 
Sbjct: 72  APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID 131

Query: 370 DYEQALDLLPND 381
            ++ AL L PN+
Sbjct: 132 SFKIALGLRPNE 143

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 46.7 bits (112), Expect = 2e-06
 Identities = 15/132 (11%), Positives = 34/132 (25%), Gaps = 20/132 (15%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHF----RSY------ 312
           + G  Y K   +       ++++                +  Q + +             
Sbjct: 47  HLGIAYVKTGAVDRGTELLERSLA-DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA 105

Query: 313 ---YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQ 369
                     +         +  AI+     L + PN  K       +   M   E+ L 
Sbjct: 106 NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP 165

Query: 370 DYEQALDLLPND 381
            +++A +L    
Sbjct: 166 HFKKANELDEGA 177

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 19/128 (14%), Positives = 45/128 (35%), Gaps = 7/128 (5%)

Query: 261 EDVIRTIKNSGNEYFKL-NRMHDAQRKYKKAVRYIKWYNQSQSKTQQK------HFRSYY 313
           E     I++  + + KL   + +  ++  +A  ++  Y+   S T  K            
Sbjct: 4   ERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQFEEENPLRD 63

Query: 314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
                     +L+      A+ L +  +  +P +++A    G  Q         +    +
Sbjct: 64  HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRR 123

Query: 374 ALDLLPND 381
            L+L P++
Sbjct: 124 CLELKPDN 131

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 9e-06
 Identities = 17/118 (14%), Positives = 38/118 (32%), Gaps = 16/118 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G    +   + +A   ++ AV           +   KH  ++       +   Q + +
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAV-----------QQDPKHMEAWQ-----YLGTTQAENE 112

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
               AI+     L ++P+N  AL     +  + +   Q  +     L   P    ++ 
Sbjct: 113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVT 170

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 20/141 (14%)

Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
           P +        E      +       K         +   + +  +  AVR         
Sbjct: 163 PAYAHLVTPAEEGAGGAGLGPS----KRILGSLLSDSLFLEVKELFLAAVRL-------- 210

Query: 302 SKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS 360
                    +         +  +      Y +A++     L + PN+     + G    +
Sbjct: 211 -------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263

Query: 361 MNNFEQGLQDYEQALDLLPND 381
            N  E+ +  Y +AL+L P  
Sbjct: 264 GNQSEEAVAAYRRALELQPGY 284

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 47.1 bits (113), Expect = 5e-07
 Identities = 15/119 (12%), Positives = 34/119 (28%), Gaps = 26/119 (21%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 322
             G   +      ++   ++KA++ +       W  + ++    +     Y  A+     
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAIQ-LDPEESKYWLMKGKALYNLER----YEEAV----- 60

Query: 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
                  Y   IN+ +D       N      +  A   +   E   +  E    L  + 
Sbjct: 61  -----DCYNYVINVIED-----EYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 43.6 bits (104), Expect = 8e-06
 Identities = 10/67 (14%), Positives = 30/67 (44%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
                  +Q     Y  +I+L +  + ++P   K    +G+A  ++  +E+ +  Y   +
Sbjct: 8   EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVI 67

Query: 376 DLLPNDQ 382
           +++ ++ 
Sbjct: 68  NVIEDEY 74

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 49.6 bits (119), Expect = 5e-07
 Identities = 12/134 (8%), Positives = 38/134 (28%), Gaps = 22/134 (16%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAV------------RYIKWYNQSQSKTQQKHFRSY---- 312
           N G   +   R   AQ                    Y+      + + ++   + +    
Sbjct: 116 NRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 175

Query: 313 -----YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
                +      +  +  +    +R      D   +  +  +  F  G+  +S+ + +  
Sbjct: 176 KEQWGWNIVEFYLGNISEQTL-MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA 234

Query: 368 LQDYEQALDLLPND 381
              ++ A+    ++
Sbjct: 235 TALFKLAVANNVHN 248

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 21/119 (17%), Positives = 34/119 (28%), Gaps = 28/119 (23%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYNQSQSKTQQKHFRSYYTAALLNMAA 322
             G  Y  L     A+  + +A+  I+      +       TQ  +    + AA      
Sbjct: 48  ERGVLYDSLGLRALARNDFSQALA-IRPDMPEVFNYLGIYLTQAGN----FDAAY----- 97

Query: 323 VQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
                +A+   + L       +P    A   RG A       +    D        PND
Sbjct: 98  -----EAFDSVLEL-------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPND 144

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 50.1 bits (120), Expect = 7e-07
 Identities = 16/113 (14%), Positives = 35/113 (30%), Gaps = 6/113 (5%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-QSKTQQKHFRSYYTAALLNMAAVQLKF 327
           N         RM  +           + Y ++                    +  +    
Sbjct: 172 NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQT-----GLGVLFHLS 226

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
             + RAI+  +  L + P +     R G    + +  E+ ++ Y +AL++ P 
Sbjct: 227 GEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG 279

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 16/110 (14%), Positives = 36/110 (32%), Gaps = 9/110 (8%)

Query: 272 NEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK 331
             +   N+    Q     + +         ++   K +   +          +LK     
Sbjct: 32  RNWISENQEAQNQVTVSASEKGY----YFHTENPFKDWPGAF-----EEGLKRLKEGDLP 82

Query: 332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
             I   +  +L +P + +A    G  Q    N +  +   ++ L+L PN+
Sbjct: 83  VTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNN 132

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 14/116 (12%), Positives = 37/116 (31%), Gaps = 16/116 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G +  K   +       + A+                   ++       +   Q + +
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAAI-----------LQDPGDAEAWQ-----FLGITQAENE 113

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
             + AI      L ++PNN+KAL     +  + ++ +   +  +  +   P  + +
Sbjct: 114 NEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYL 169

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 21/179 (11%), Positives = 53/179 (29%), Gaps = 24/179 (13%)

Query: 245 PEDWKSNPETVQ-LNQMEDVIRTIKNSGNEYFKLN-------RMHDAQRKYKKAVRYIKW 296
                   E    L +++ ++  +    + YF+ +       +  D Q + +K    ++ 
Sbjct: 34  SMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQEEMEKT---LQQ 90

Query: 297 YNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY-KRAINLCDDILLMEPNNVKALFRRG 355
             +    + Q   ++                  Y   A  L    + +EP  V+A  + G
Sbjct: 91  MEEVL-GSAQVEAQALM-----LKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLG 144

Query: 356 RAQVSMNNFEQGLQDYEQALDLLPNDQ------QILKEIAFVRKQMRHHLNLEKMTYAR 408
                  +       +  AL    N         +L+++            ++ +  A+
Sbjct: 145 EVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 3e-05
 Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 16/135 (11%)

Query: 251 NPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVR-----YIKWYNQSQSKTQ 305
               V L  +  V+R ++   +       + D+ R+ K AV+        WY    +   
Sbjct: 167 CKNKVSLQNLSMVLRQLQT-DSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNA--- 222

Query: 306 QKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFE 365
                  Y +   N        +    A    + +     +N      R        ++ 
Sbjct: 223 -------YLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYG 275

Query: 366 QGLQDYEQALDLLPN 380
           + L+ + QA  L P 
Sbjct: 276 EALEGFSQAAALDPA 290

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 15/140 (10%), Positives = 41/140 (29%), Gaps = 20/140 (14%)

Query: 242 PPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQ 301
           P + +    N +      ++     +++    +   N   + +     A+          
Sbjct: 120 PQYEQLGSVNLQA----DVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM-------- 167

Query: 302 SKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM 361
                            ++  +      Y  A       + + P++ +   + G    + 
Sbjct: 168 --------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANG 219

Query: 362 NNFEQGLQDYEQALDLLPND 381
           N  ++ L  Y +ALD+ P  
Sbjct: 220 NRPQEALDAYNRALDINPGY 239

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 12/69 (17%), Positives = 17/69 (24%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
           Y    +      LK      A    + +    P   +A    G  Q         +    
Sbjct: 20  YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALN 79

Query: 373 QALDLLPND 381
            A  L P D
Sbjct: 80  HARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 16/116 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G    KL  + +A   ++   +              +   ++      ++   Q + +
Sbjct: 26  EEGLSMLKLANLAEAALAFEAVCQA-----------APEREEAWR-----SLGLTQAENE 69

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
               AI   +   +++P ++        +  + +N    L      L   P  +Q+
Sbjct: 70  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 125

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 12/158 (7%), Positives = 44/158 (27%), Gaps = 37/158 (23%)

Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRY---------------------- 293
               +    +  + +G     L RM +A +  +KA                         
Sbjct: 68  NNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME 127

Query: 294 -------IKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-------FKAYKRAINLCDD 339
                  +  Y Q+ +  + +         +   + + ++         + ++  ++  +
Sbjct: 128 PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE 187

Query: 340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
            +   P   K    +   Q+   ++    +   ++  +
Sbjct: 188 -MENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSI 224

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 44.6 bits (106), Expect = 4e-06
 Identities = 15/92 (16%), Positives = 31/92 (33%), Gaps = 2/92 (2%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
                  +     + + +  A+      L  +P    A    G+      +     Q +E
Sbjct: 18  NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77

Query: 373 QALDLLPN--DQQILKEIAFVRKQMRHHLNLE 402
             L    +  DQQ++KE+    +++     LE
Sbjct: 78  SGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 14/116 (12%), Positives = 34/116 (29%), Gaps = 16/116 (13%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G    KL  + +A   ++   +                       A  ++   Q + +
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQ----------------KEPEREEAWRSLGLTQAENE 65

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
               AI   +   +++P ++        +  + +N    L      L   P  +Q+
Sbjct: 66  KDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 13/74 (17%), Positives = 20/74 (27%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
             +      LK      A    + +   EP   +A    G  Q         +     A 
Sbjct: 19  NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHAR 78

Query: 376 DLLPNDQQILKEIA 389
            L P D  +   +A
Sbjct: 79  MLDPKDIAVHAALA 92

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 9/103 (8%)

Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
           H    +++ A  +   Y ++ +   +   R     +  ++         +  AI   +  
Sbjct: 273 HIFLGQFEDAAEH---YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRH 329

Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
           L +           +A +  G A  ++   E+ L+  EQ L L
Sbjct: 330 LAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 8/105 (7%), Positives = 26/105 (24%), Gaps = 7/105 (6%)

Query: 277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL 336
            N                  ++ +  +       S     L             +  +  
Sbjct: 14  ENVSSLGLGSGGGGTNS---HDGNSQQGSGSDGGSSMCLELALEGERLCNAGDCRAGVAF 70

Query: 337 CDDILLMEPNNVK----ALFRRGRAQVSMNNFEQGLQDYEQALDL 377
               +     +++       + G A   + ++ + +Q ++  L L
Sbjct: 71  FQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 13/128 (10%), Positives = 30/128 (23%), Gaps = 18/128 (14%)

Query: 256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA 315
             +    +   +   G                +  V +   +  +     +       +A
Sbjct: 40  GSDGGSSMCLELALEGERLCNAG-------DCRAGVAF---FQAAIQAGTEDL--RTLSA 87

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQ 369
               +         Y +A+      L +           K+    G     M  F++   
Sbjct: 88  IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAI 147

Query: 370 DYEQALDL 377
             E+ L L
Sbjct: 148 CCERHLTL 155

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 46.5 bits (111), Expect = 9e-06
 Identities = 21/127 (16%), Positives = 49/127 (38%), Gaps = 16/127 (12%)

Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
           +    +++ A  Y   Y ++    +Q   R+    +  ++       + Y++AI+     
Sbjct: 237 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293

Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ 394
           L +           +A +  G A  ++ N +Q +   E+ L       +I +E+     +
Sbjct: 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREVGDKSGE 346

Query: 395 MRHHLNL 401
           +   LNL
Sbjct: 347 LTARLNL 353

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 16/124 (12%), Positives = 35/124 (28%), Gaps = 18/124 (14%)

Query: 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN 319
           ME     +   G    K           +  V +   +  +     +       +A    
Sbjct: 5   MEASCLELALEGERLCKSG-------DCRAGVSF---FEAAVQVGTEDL--KTLSAIYSQ 52

Query: 320 MAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQ 373
           +         Y +A+      L +      +    KA    G     + NF++ +   ++
Sbjct: 53  LGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQR 112

Query: 374 ALDL 377
            LD+
Sbjct: 113 HLDI 116

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 43.5 bits (104), Expect = 1e-05
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 16/112 (14%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N GN Y+K     +A   Y+KA+  +                     A  N+     K  
Sbjct: 6   NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PRSAEAWYNLGNAYYKQG 49

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
            Y  AI      L ++P + +A +  G A     ++++ ++ Y++AL+L P 
Sbjct: 50  DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 101

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 44.2 bits (105), Expect = 4e-05
 Identities = 16/103 (15%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
           +    +++ A  Y   Y ++    +Q   R+    +  ++       + Y++AI+     
Sbjct: 233 YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 289

Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
           L +           +A +  G A  ++ N +Q +   E+ L++
Sbjct: 290 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 43.3 bits (103), Expect = 5e-05
 Identities = 14/117 (11%), Positives = 29/117 (24%), Gaps = 27/117 (23%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK-----WYNQSQSKTQQKHFRSYYTAALLNMAAV 323
             G  Y  L     A+   K+A+  ++         ++              AL      
Sbjct: 123 QRGLVYALLGERDKAEASLKQALA-LEDTPEIRSALAELYLSMGR----LDEAL------ 171

Query: 324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
                 Y +A+          P ++    R   A +     E+  +          +
Sbjct: 172 ----AQYAKALEQ-------APKDLDLRVRYASALLLKGKAEEAARAAALEHHHHHH 217

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.9 bits (102), Expect = 6e-05
 Identities = 17/125 (13%), Positives = 30/125 (24%), Gaps = 31/125 (24%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIK------WYN-------QSQSKTQQKHFRSYYTA 315
                  KL  ++ A    K  V          +           +    ++  + Y   
Sbjct: 44  WLARTQLKLGLVNPALENGKTLVA-RTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQ 102

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
           AL             K A  +        P       +RG     +   ++     +QAL
Sbjct: 103 AL----------SVLKDAERV-------NPRYAPLHLQRGLVYALLGERDKAEASLKQAL 145

Query: 376 DLLPN 380
            L   
Sbjct: 146 ALEDT 150

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 41.2 bits (98), Expect = 7e-05
 Identities = 28/112 (25%), Positives = 47/112 (41%), Gaps = 16/112 (14%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N GN Y+K     +A   Y+KA+  +                     A  N+     K  
Sbjct: 14  NLGNAYYKQGDYDEAIEYYQKALE-LD---------------PNNAEAWYNLGNAYYKQG 57

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
            Y  AI      L ++PNN +A +  G A     ++++ ++ Y++AL+L PN
Sbjct: 58  DYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 40.4 bits (95), Expect = 8e-05
 Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 11/93 (11%)

Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQAL 375
            L      +     + A+   ++ L  EP    +A +  G A   + ++++ L +Y+ A+
Sbjct: 3   QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAI 62

Query: 376 DLLPND-----QQILKEI-AFVRK----QMRHH 398
           +L P+      ++++ +I  F  K    Q+ HH
Sbjct: 63  ELNPDSPALQARKMVMDILNFYNKDMYNQLEHH 95

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 42.9 bits (101), Expect = 1e-04
 Identities = 17/132 (12%), Positives = 43/132 (32%), Gaps = 12/132 (9%)

Query: 256 QLNQMEDVIRTIKNSGNEYFKLNR--MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY 313
            L +++     +      YF   R      QR+Y  A   IK++ +++SK      R   
Sbjct: 86  LLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSA---IKFFKKAESKLIFVKDRIEK 142

Query: 314 TAALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
                 M+      K    +++       +  +        ++         + +  +E 
Sbjct: 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYED 202

Query: 367 GLQDYEQALDLL 378
            +  +++A  + 
Sbjct: 203 AISHFQKAYSMA 214

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 12/103 (11%), Positives = 35/103 (33%), Gaps = 9/103 (8%)

Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
               ++Y+ A   I  + ++ S  + +         L N+   +     Y+ AI      
Sbjct: 194 FLDLKQYEDA---ISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250

Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL 377
           + +       P+  +A F   +    +   ++  + + + +  
Sbjct: 251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAY 293

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 14/108 (12%), Positives = 37/108 (34%), Gaps = 9/108 (8%)

Query: 274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA 333
           +F+   +   Q+   +    + +      + Q K+++ ++     +   +    +   + 
Sbjct: 135 HFRRVLLKSLQKDLHEE---MNYITAI-IEEQPKNYQVWH-----HRRVLVEWLRDPSQE 185

Query: 334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
           +    DIL  +  N  A   R         ++  LQ  +Q L     +
Sbjct: 186 LEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA 374
             LL   +  L+   + +A+N+   +     +       +    +    FE      ++ 
Sbjct: 7   EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELA----QEL 62

Query: 375 LDLLPNDQQ 383
           L  +P + Q
Sbjct: 63  LATIPLEYQ 71

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.2 bits (92), Expect = 2e-04
 Identities = 16/92 (17%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYE 372
                  +A   LK     RA+ L ++++  +P+ V   +  G+    ++  +  +  Y 
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65

Query: 373 QALDLLPN--DQQILKEIAFVRKQM----RHH 398
           Q +++      Q+ L E+   + +      HH
Sbjct: 66  QGIEVAREEGTQKDLSELQDAKLKAEGLEHHH 97

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 19/132 (14%), Positives = 43/132 (32%), Gaps = 12/132 (9%)

Query: 256 QLNQMEDVIRTIKNSGNEYFKLNR--MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY 313
            L  +E   + +      Y    R      Q++Y +A+ Y   Y +++ +          
Sbjct: 84  LLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGY---YREAEKELPFVSDDIEK 140

Query: 314 TAALLNMAAVQLKFKAYKRAIN-------LCDDILLMEPNNVKALFRRGRAQVSMNNFEQ 366
                 +A      K    ++        +  +  L     +++LF          ++++
Sbjct: 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDK 200

Query: 367 GLQDYEQALDLL 378
            L   E AL+L 
Sbjct: 201 ALPHLEAALELA 212

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 16/131 (12%), Positives = 34/131 (25%), Gaps = 16/131 (12%)

Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDD 339
                 +  A R    + + +             +     +A V L F     A    + 
Sbjct: 76  ERMAGNWDAARRC---FLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132

Query: 340 ILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL------PNDQQILKE 387
            L+       +     A    G       N  +  Q + +A D+           +++  
Sbjct: 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTR 192

Query: 388 IAFVRKQMRHH 398
           +  +     HH
Sbjct: 193 LNGLEHHHHHH 203

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 18/114 (15%), Positives = 44/114 (38%), Gaps = 16/114 (14%)

Query: 281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI 340
           +    +++ A  Y   Y ++    +Q   R+    +  ++       + Y++AI+     
Sbjct: 59  YIFLGEFETASEY---YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115

Query: 341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
           L +           +A +  G A  ++ N +Q +   E+ L       +I +E+
Sbjct: 116 LAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL-------EISREV 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	414
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	100.0
2wfi_A	179	Peptidyl-prolyl CIS-trans isomerase G; phosphoprot	100.0
2igv_A	173	Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1	100.0
1a58_A	177	Cyclophilin; isomerase, ppiase; 1.95A {Brugia mala	100.0
2he9_A	192	NK-tumor recognition protein; cyclosporin, isomera	100.0
2poy_A	186	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
1qng_A	170	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2cmt_A	172	Peptidyl-prolyl CIS-trans isomerase E; rotamase ac	100.0
1mzw_A	177	Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyc	100.0
2z6w_A	165	Peptidyl-prolyl CIS-trans isomerase; isomerase-imm	100.0
2r99_A	173	Peptidyl-prolyl CIS-trans isomerase E; CIS-trans i	100.0
3pmp_A	164	Cyclophilin A; peptidyl prolyl isomerase, isomeras	100.0
2haq_A	172	Cyclophilin; rotamase, proline, isomerase, CIS-tra	100.0
3rdd_A	184	Peptidyl-prolyl CIS-trans isomerase A; beta barrel	100.0
1z81_A	229	Cyclophilin; structural genomics, structural genom	100.0
3k2c_A	193	Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH,	100.0
3ich_A	188	Peptidyl-prolyl CIS-trans isomerase B; beta sandwi	100.0
4fru_A	185	Cyclophilin B, peptidyl-prolyl CIS-trans isomerase	100.0
2ose_A	234	Probable peptidyl-prolyl CIS-trans isomerase; cycl	100.0
2c3b_A	172	Ppiase, cyclophilin; isomerase, 3D domain swapping	100.0
2ok3_A	161	Peptidyl-prolyl CIS-trans isomerase-like 3; beta-b	100.0
2x7k_A	166	Peptidyl-prolyl CIS-trans isomerase-like 1; isomer	100.0
2poe_A	185	Cyclophilin-like protein, putative; cryptosporidiu	100.0
2b71_A	196	Cyclophilin-like protein; structural genomics, str	100.0
2fu0_A	160	Cyclophilin, putative; PFE0505W, cyclosporin-bindi	100.0
1zkc_A	197	Peptidyl-prolyl CIS-trans isomerase like 2; CIS-tr	100.0
2a2n_A	176	Peptidylprolyl isomerase domain and WD repeat CON;	100.0
2k7n_A	203	Peptidyl-prolyl CIS-trans isomerase-like 1; beta b	100.0
1w74_A	191	Peptidyl-prolyl CIS-trans isomerase A; cyclophilin	100.0
3bo7_A	201	Peptidyl-prolyl CIS-trans isomerase cyclophilin-T;	100.0
1v9t_A	166	Cyclophilin B; beta barrel, isomerase-isomerase in	100.0
2hq6_A	185	Serologically defined colon cancer antigen 10; pro	100.0
3bkp_A	232	Cyclophilin; malaria, isomerase, structural GENO s	100.0
1lop_A	164	Cyclophilin A; rotamase, isomerase-isomerase inhib	100.0
3s6m_A	167	Peptidyl-prolyl CIS-trans isomerase; seattle struc	100.0
3rfy_A	369	Peptidyl-prolyl CIS-trans isomerase CYP38, chloro;	100.0
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.85
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.85
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.81
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.8
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.79
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.75
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.71
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.71
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.68
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.68
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.67
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.67
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.66
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.61
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.6
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.58
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.58
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.56
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.55
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.54
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.54
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.52
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.5
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.5
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.49
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.48
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.47
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.47
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.44
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.43
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.42
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.41
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.41
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.41
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.4
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.4
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.37
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.36
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.36
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.36
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.36
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.34
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.34
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.34
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.32
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.32
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.32
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.32
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.31
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.31
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.31
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.31
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.3
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.3
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.29
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.29
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.29
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.29
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.29
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.28
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.28
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.28
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.28
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.26
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.26
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.26
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.26
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.26
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.26
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.25
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.25
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.24
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.23
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.23
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.22
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.22
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.22
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.21
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.21
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.2
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.2
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.19
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.18
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.18
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.16
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.15
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.15
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.15
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.13
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.13
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.12
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.1
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.1
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.1
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.09
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.07
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.07
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.06
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.05
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.05
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.05
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.04
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.04
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.04
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.03
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.03
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.02
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.02
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.02
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.02
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.0
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.0
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.99
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.99
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.99
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.97
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.96
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.95
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.94
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.93
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.93
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.93
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.92
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.92
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.91
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.91
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.9
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.9
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.9
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.9
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.89
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.86
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.84
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.82
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.8
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.8
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.79
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.77
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.76
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.76
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.76
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.73
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.73
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.7
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.7
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.68
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.67
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.65
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.64
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.61
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.59
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.58
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.58
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.54
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.51
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.48
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.45
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.31
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.31
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.31
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.3
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.3
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.25
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.24
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.19
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.17
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.08
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.08
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.07
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.06
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.93
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.74
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.71
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.45
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.31
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.31
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.19
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.07
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.03
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	97.01
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.82
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.68
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.36
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.13
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	95.56
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.44
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.4
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	95.33
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.93
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	94.51
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.34
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.26
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	93.99
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.46
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	93.22
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.03
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	92.6
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	92.57
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	92.25
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	92.18
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	92.18
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.04
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	92.04
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	91.82
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	91.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.29
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	90.74
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.69
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	87.84
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	87.44
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	84.51
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.46
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	83.92
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.48
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	83.45
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	82.83
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.54
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	81.54
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	80.34
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	80.24

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=100.00  E-value=1.3e-71  Score=541.22  Aligned_cols=355  Identities=46%  Similarity=0.793  Sum_probs=322.1

Q ss_pred             CcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCC-CcccccCCCcceEEeccceeccCCccccCCCC
Q psy793           10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~-~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      +|+||||++|++++.|+|+|+||++.||+||+||+.||++..|.|.. |+..||+||.||||||||||||||++.++|  
T Consensus        15 ~~~v~~~~~~~~~~~G~i~~~l~~~~~P~t~~nf~~l~~~~~~~~~~~g~~~~y~~~~fhrv~~~f~~q~Gd~~~~~g--   92 (370)
T 1ihg_A           15 NPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNG--   92 (370)
T ss_dssp             SCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTTTSSS--
T ss_pred             CCeEEEEEEECCEecccEEEEEcCCCCchHHHHHHHHcCCCcCcCccCCCcceeCCcEeEEEECCcEEECCCCCCCCC--
Confidence            89999999999999999999999999999999999999998776532 455689999999999999999999986666  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                +||.++||..|++|.+.++|+.+|+|+||+.+ |+++|
T Consensus        93 ------------------------------------------~g~~~~~~~~~~~e~~~~~~~~~g~l~ma~~~-~~~~~  129 (370)
T 1ihg_A           93 ------------------------------------------TGGESIYGEKFEDENFHYKHDKEGLLSMANAG-SNTNG  129 (370)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCCBCCCSTTEEEECCSS-TTCBC
T ss_pred             ------------------------------------------CCCCCCCCCCcCCCcCCcCCCCCeEEEEeeCC-CCCCC
Confidence                                                      66778889999999999999999999999999 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCCCCCCCcCcccCCCCCCCCCCCCCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAENDGSQDVYPPFPEDW  248 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l~~~~~~~i~~~~~~~d~~~~~~~~~  248 (414)
                      ||||||++++|||||+|||||+|++|++||++|+.+++..++|..+|+|..|+++.....|.+...+...+.++..+.++
T Consensus       130 sqffi~~~~~~~ld~~~~vfG~v~~g~~v~~~i~~~~~~~~~P~~~v~I~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~  209 (370)
T 1ihg_A          130 SQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKDGSGDSHPDFPEDA  209 (370)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEEEEEECTTCCCCCSCCSSSCCCSCSSGGGS
T ss_pred             ceEEEeCCCCcccCCCceEEEEEecCHHHHHHHHcCCCCCCccceeEEEEEEEEeccCcccccccccccccccccccccc
Confidence            99999999999999999999999999999999999998669999999999999998888888877677888999999988


Q ss_pred             CCCCccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh
Q psy793          249 KSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK  328 (414)
Q Consensus       249 ~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~  328 (414)
                      ...+..  .++..+.+..++.+|+.+++.|+|++|+..|++|+++.+........+......+....+|.|+|.||++++
T Consensus       210 ~~~~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g  287 (370)
T 1ihg_A          210 DVDLKD--VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMS  287 (370)
T ss_dssp             SSCTTC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccc--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            765544  888899999999999999999999999999999999876543233344555568899999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy793          329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  408 (414)
Q Consensus       329 ~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  408 (414)
                      +|++|+.+|++||+++|+++++|+++|.+|..+|++++|+.+|++|++++|++..++..++.++..+++..++++..+++
T Consensus       288 ~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~k  367 (370)
T 1ihg_A          288 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAK  367 (370)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC--
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhc
Q psy793          409 MFQ  411 (414)
Q Consensus       409 ~f~  411 (414)
                      ||+
T Consensus       368 mf~  370 (370)
T 1ihg_A          368 MFA  370 (370)
T ss_dssp             ---
T ss_pred             hhC
Confidence            995

>2wfi_A Peptidyl-prolyl CIS-trans isomerase G; phosphoprotein, PRE-mRNA splicing, alternative splicing, nucleus, rotamase, cyclosporin; HET: OCS; 0.75A {Homo sapiens} PDB: 2wfj_A* 2gw2_A

Probab=100.00  E-value=4.3e-52  Score=356.81  Aligned_cols=172  Identities=50%  Similarity=0.845  Sum_probs=158.3

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEeccceeccCCccccC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQFMIQGGDITNFN   85 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (414)
                      +..||+||||+++++|+.|+|+||||++.||+||+||++||+|..+.+ ..++.+||+|+.||||+|+|||||||+..++
T Consensus         6 ~~~~~~vf~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~   85 (179)
T 2wfi_A            6 KVQRPRCFFDIAINNQPAGRVVFELFSDVCPKTCENFRCLCTGEKGTGKSTQKPLHYKSCLFHRVVKDFMVQGGDFSEGN   85 (179)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTTTSS
T ss_pred             CCCCCeEEEEEEECCccceEEEEEEcCCCCChHHHHHHHHhcCCcCcccccccCCeECCCEEEEEECCCEEEcccccCCC
Confidence            457999999999999999999999999999999999999999988766 3457899999999999999999999997655


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            +++.|+||..+++|++.++|+.+|+|||||.+ |+
T Consensus        86 g--------------------------------------------~gg~si~g~~f~dE~~~~~h~~~G~lsMAn~g-p~  120 (179)
T 2wfi_A           86 G--------------------------------------------RGGESIYGGFFEDESFAVKHNKEFLLSMANRG-KD  120 (179)
T ss_dssp             S--------------------------------------------SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSS-TT
T ss_pred             C--------------------------------------------CCCCcccCCcccccccCcCcCCCeEEEEEeCC-CC
Confidence            5                                            56678888899999999999999999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL  223 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l  223 (414)
                      +++||||||++++||||++|+|||+|++||+||++|+.+++. .++|..+|+|.+||+|
T Consensus       121 tngSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~G~l  179 (179)
T 2wfi_A          121 TNGSQFFITTKPTPHLDGHHVVFGQVISGQEVVREIENQKTDAASKPFAEVRILSCGEL  179 (179)
T ss_dssp             CBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTCCBCTTSCBSSCEEEEEEEEC
T ss_pred             CcceEEEEEcCCCcccCCCeeEEEEEeCCHHHHHHHHcCCCCCCCCCCCCeEEEeCeeC
Confidence            999999999999999999999999999999999999999984 5899999999999875

>2igv_A Peptidyl-prolyl CIS-trans isomerase 3; rotamase; 1.67A {Caenorhabditis elegans} SCOP: b.62.1.1 PDB: 1e3b_A 1e8k_A 1dyw_A 2igw_A 2hqj_A

Probab=100.00  E-value=6.9e-52  Score=354.00  Aligned_cols=171  Identities=58%  Similarity=0.949  Sum_probs=159.0

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .||+||||+++++++.|+|+||||++.||+||+||++||++..|.+..++..||+|+.||||+|+|||||||+..+++  
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~G--   79 (173)
T 2igv_A            2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG--   79 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSS--
T ss_pred             CCCEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhcCCCCCCccCccceECCCEEEEEECCCEEEcCCCCCCCC--
Confidence            479999999999999999999999999999999999999987666555677799999999999999999999976655  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                +++.++||..+++|.+.++|+.+|+|||||.+ |++++
T Consensus        80 ------------------------------------------~gg~siyg~~f~dE~~~l~h~~~G~lsmAn~g-p~tng  116 (173)
T 2igv_A           80 ------------------------------------------TGGESIYGEKFPDENFKEKHTGPGVLSMANAG-PNTNG  116 (173)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCBS
T ss_pred             ------------------------------------------CCCCccCCCcccCcccccCCCCCeEEEEeeCC-CCCcc
Confidence                                                      56677888889999999999989999999999 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS  224 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l~  224 (414)
                      ||||||++++||||++|+|||+|++||+||++|+.+++.+++|..+|+|.+||++.
T Consensus       117 SQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~~g~l~  172 (173)
T 2igv_A          117 SQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQLK  172 (173)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEEEC
T ss_pred             eEEEEEcCCccccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEEeEEEc
Confidence            99999999999999999999999999999999999999889999999999999874

>1a58_A Cyclophilin; isomerase, ppiase; 1.95A {Brugia malayi} SCOP: b.62.1.1 PDB: 1a33_A 1c5f_A*

Probab=100.00  E-value=1e-51  Score=354.26  Aligned_cols=172  Identities=52%  Similarity=0.892  Sum_probs=157.5

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCC-CcccccCCCcceEEeccceeccCCccccC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFHRIIPQFMIQGGDITNFN   85 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~-~~~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (414)
                      +..||+||||+++++|+.|+|+||||++.||+||+||++||++..+.+.. ++.+||+|+.||||+|+|||||||+..++
T Consensus         3 ~~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~~~~~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~~   82 (177)
T 1a58_A            3 KKDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGD   82 (177)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCCSSSS
T ss_pred             CCCCcEEEEEEEECCEeceeEEEEEcCCCCchHHHHHHHHhcCCcCcccccCCcceeCCCEEEEEECCCEEEeCCccCCC
Confidence            34689999999999999999999999999999999999999987765532 45569999999999999999999997665


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            +++.++||..|++|.+.++|+.+|+|||||.+ |+
T Consensus        83 g--------------------------------------------~gg~si~g~~f~dE~~~~~h~~~G~lsmAn~g-p~  117 (177)
T 1a58_A           83 G--------------------------------------------TGGESIYGGMFDDEEFVMKHDEPFVVSMANKG-PN  117 (177)
T ss_dssp             S--------------------------------------------SCCCCTTSSCBCCCCCCSCCCSSSEEEECCSS-TT
T ss_pred             C--------------------------------------------CCCCcccCCcccCcccCcccCCCeEEEEeeCC-CC
Confidence            6                                            56677888899999999999999999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL  223 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l  223 (414)
                      +++||||||++++|+||++|+|||+|++||+||++|+.+++. .++|..+|+|.+||++
T Consensus       118 tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~G~l  176 (177)
T 1a58_A          118 TNGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL  176 (177)
T ss_dssp             CBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEE
T ss_pred             CceeEEEEECCCCCccCCCEEEEEEEEcCHHHHHHHHhCCCCCCCcCCCCeEEEEeEEE
Confidence            999999999999999999999999999999999999999984 5899999999999976

>2he9_A NK-tumor recognition protein; cyclosporin, isomerase, membrane, repeat, rotamase, peptidylprolyl isomerase, structural genomics; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-51  Score=356.33  Aligned_cols=176  Identities=47%  Similarity=0.830  Sum_probs=158.8

Q ss_pred             ccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEeccceeccCCcc
Q psy793            4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQFMIQGGDIT   82 (414)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~~~iq~G~~~   82 (414)
                      ..+...+|+||||+.+++|+.|+|+||||++.||+||+||++||+|+.+.+ ..++.+||+|+.||||+|+|||||||+.
T Consensus        13 ~~~~~~~~~vf~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~k~~~Y~g~~FhRVi~~fmiQgGd~~   92 (192)
T 2he9_A           13 GLVPRGSPQCHFDIEINREPVGRIMFQLFSDICPKTCKNFLCLCSGEKGLGKTTGKKLCYKGSTFHRVVKNFMIQGGDFS   92 (192)
T ss_dssp             ------CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBSCCTTCBEEEEETTTEEEECCTT
T ss_pred             cccccCCCeEEEEEEECCEecceEEEEEcCCCCchHHHHHHHHhcCCCCcccccccCCeECCCEEEEEECCCEEEcCccc
Confidence            456778999999999999999999999999999999999999999988766 3457899999999999999999999997


Q ss_pred             ccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCC
Q psy793           83 NFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTG  162 (414)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~  162 (414)
                      .+++                                            +++.++||..|++|++.++|+.+|+|+|||.+
T Consensus        93 ~~~G--------------------------------------------~gg~siyg~~f~dE~~~l~h~~~G~lsMAn~g  128 (192)
T 2he9_A           93 EGNG--------------------------------------------KGGESIYGGYFKDENFILKHDRAFLLSMANRG  128 (192)
T ss_dssp             TSSS--------------------------------------------SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSS
T ss_pred             CCCC--------------------------------------------CCCCcccCCcccCccccCCCCCCeEEEEEeCC
Confidence            6555                                            56778888899999999999999999999999


Q ss_pred             CCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCCC
Q psy793          163 HPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQLS  224 (414)
Q Consensus       163 ~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l~  224 (414)
                       |++++||||||++++|+||++|+|||+|++||+||++|+.+++. .++|..+|+|.+||++.
T Consensus       129 -p~tngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~g~l~  190 (192)
T 2he9_A          129 -KHTNGSQFFITTKPAPHLDGVHVVFGLVISGFEVIEQIENLKTDAASRPYADVRVIDCGVLA  190 (192)
T ss_dssp             -TTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEECC
T ss_pred             -CCCcceEEEEEcCCCcccCCCccEEEEEEeCHHHHHHHHcCCcCCCCCCcCCeEEEEeEEEc
Confidence             99999999999999999999999999999999999999999984 58999999999999885

>2poy_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, isomerase, S genomics, structural genomics consortium; HET: BMT; 1.80A {Cryptosporidium parvum iowa II} PDB: 2plu_A*

Probab=100.00  E-value=2.6e-51  Score=352.86  Aligned_cols=173  Identities=58%  Similarity=0.931  Sum_probs=157.3

Q ss_pred             cccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCcccc
Q psy793            5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF   84 (414)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~   84 (414)
                      .+...||+||||+++++|+.|+|+||||++.||+||+||++||+++.+.+..++..+|+|+.||||+|+|||||||+..+
T Consensus        14 ~~~~~~~~v~~di~i~~t~~G~I~ieL~~~~aP~t~~NF~~L~~g~~g~~~~~~~~~Y~g~~FhRVi~~f~iQgGd~~~~   93 (186)
T 2poy_A           14 LYFQGNPVVYFDISIGQTPAGRITMELFADKVPITAENFRALCTGEKGMGQSGKPLCYTGSFFHRIIPQFMIQGGDFTRG   93 (186)
T ss_dssp             ----CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTS
T ss_pred             cccCCCCEEEEEEeECCEecccEEEEEeCCCCcHHHHHHHHHhcccCCccccCccceECCCEEEEEeCCCEEEeCCCCCC
Confidence            45677999999999999999999999999999999999999999877666666778899999999999999999999766


Q ss_pred             CCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCC
Q psy793           85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHP  164 (414)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~  164 (414)
                      ++                                            +++.|+||..|++|.+.++|..+|+|+||+.+ |
T Consensus        94 ~G--------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsMAn~g-p  128 (186)
T 2poy_A           94 DG--------------------------------------------TGGESIYGSKFRDENFVYTHDAPFLLSMANAG-P  128 (186)
T ss_dssp             SS--------------------------------------------SCCCCTTC-CBCCCCCCSCCCSTTEEEECCSS-T
T ss_pred             CC--------------------------------------------CCCCccCCCcccCcccccccCCCcEEEEeeCC-C
Confidence            65                                            56677888889999999999989999999999 9


Q ss_pred             CCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCC
Q psy793          165 NTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ  222 (414)
Q Consensus       165 ~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~  222 (414)
                      ++++||||||++++|+||++|+|||+|++||+||++|+.+++.+++|..+|+|.+||+
T Consensus       129 ntngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~P~~~v~I~~cG~  186 (186)
T 2poy_A          129 NTNGSQFFITTVPCPWLDGKHVVFGKVLEGMEVVKSIEKCGSQNGKPTKSVCITASGV  186 (186)
T ss_dssp             TCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEEEC
T ss_pred             CCcccEEEEECCCCcccCCCeeEEEEEecCHHHHHHHHhCCCCCCCCCCCEEEEeCCC
Confidence            9999999999999999999999999999999999999999998899999999999984

>1qng_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, cyclophilin-cyclosporin complex, immunosuppressant, cyclophilin; HET: BMT; 2.1A {Plasmodium falciparum} SCOP: b.62.1.1 PDB: 1qnh_A*

Probab=100.00  E-value=2.4e-51  Score=349.67  Aligned_cols=169  Identities=59%  Similarity=0.955  Sum_probs=155.7

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .||+||||+++++++.|+|+||||++.||+||+||++||++. +.+..++..+|+|+.||||+|+|||||||+..+++  
T Consensus         2 ~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~-g~g~~~~~~~Y~g~~FhRvi~~f~iQgGd~~~~~g--   78 (170)
T 1qng_A            2 KRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGE-KIGSRGKNLHYKNSIFHRIIPQFMCQGGDITNGNG--   78 (170)
T ss_dssp             CSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTC-EECTTSSEECCTTCBCCEEETTTEEEECCTTTSSS--
T ss_pred             CCCEEEEEEeECCEeceeEEEEEcCCCCCHHHHHHHHHhccC-CcCccCccceECCCEEEEEECCCEEEcCCccCCCC--
Confidence            589999999999999999999999999999999999999864 33444566779999999999999999999976655  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                +++.++||..|++|.+.++|+.+|+||||+.+ |++++
T Consensus        79 ------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~g-p~tng  115 (170)
T 1qng_A           79 ------------------------------------------SGGESIYGRSFTDENFNMKHDQPGLLSMANAG-PNTNS  115 (170)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCBC
T ss_pred             ------------------------------------------CCCccccCCcccccccccccCCCCEEEEeecC-CCCcc
Confidence                                                      56678888899999999999999999999999 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      ||||||++++|+||++|+|||+|++||+||++|+.+++.+++|..+|+|.+||++
T Consensus       116 SQFfIt~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~t~~~~P~~~v~I~~cG~l  170 (170)
T 1qng_A          116 SQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL  170 (170)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEEC
T ss_pred             cEEEEECCCCcccCCCeeEEEEEECCHHHHHHHHhCCCCCCCCCCCeEEEeceeC
Confidence            9999999999999999999999999999999999999988999999999999875

>2cmt_A Peptidyl-prolyl CIS-trans isomerase E; rotamase activity, rotamase, RNA-binding, cyclosporin, cyclophilin, beta-barrel; 1.50A {Schistosoma mansoni} PDB: 2ck1_A

Probab=100.00  E-value=5.4e-51  Score=347.33  Aligned_cols=170  Identities=51%  Similarity=0.805  Sum_probs=152.0

Q ss_pred             CCcccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccc-cCCCcceEEeccceeccC
Q psy793            1 MDKSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSRFHRIIPQFMIQGG   79 (414)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~-y~~~~f~rv~~~~~iq~G   79 (414)
                      |+-......||+||||+++++|+.|+|+||||++.||+||+||++||++..        +| |+|+.||||+|+||||||
T Consensus         1 ~~~~~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~--------g~~Y~g~~FhRvi~~f~iQgG   72 (172)
T 2cmt_A            1 MRTKKQKRNLPRVFFDIRIGNGDAGRIVMELRSDIVPRTAENFRALCTGER--------GFGYHNCCFHRVIPQFMCQGG   72 (172)
T ss_dssp             --------CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCSSTTCBEEEEETTTEEEEC
T ss_pred             CCccCCCCCCCEEEEEEEECCeecceEEEEEcCCCCCHHHHHHHHHhccCC--------CceECCCEEEEEECCCEEEcC
Confidence            344456677999999999999999999999999999999999999998643        35 999999999999999999


Q ss_pred             CccccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeec
Q psy793           80 DITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLA  159 (414)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~  159 (414)
                      |+..+++                                            +++.++||..+++|.+.++|+.+|+||||
T Consensus        73 d~~~~~G--------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsmA  108 (172)
T 2cmt_A           73 DFVKGDG--------------------------------------------TGGKSIYGRKFDDENFQLRHEGFGVLSMA  108 (172)
T ss_dssp             CTTTSSS--------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEEC
T ss_pred             CccCCCC--------------------------------------------CCCCccCCCcccccccCcccCCceEEEEe
Confidence            9976655                                            56677888889999999999999999999


Q ss_pred             cCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          160 NTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       160 ~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      +++ |++++||||||++++|+||++|+|||+|++||+||++|+.+++.+++|..+|+|.+||++
T Consensus       109 ~~g-p~t~gSQFfIt~~~~~~LDg~~tvFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~~g~l  171 (172)
T 2cmt_A          109 NSG-PNTNGSQFFICTTKCDWLDGKHVVFGRVVDGQNVVKKMESVGSKSGKVKEPVIISRCGEL  171 (172)
T ss_dssp             CSS-TTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHGGGGCCTTCCCSSCEEEEEEEEE
T ss_pred             eCC-CCCcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCEEEEEeEeE
Confidence            999 999999999999999999999999999999999999999999988999999999999976

>1mzw_A Cyclophilin H, U-snRNP-ASSOCIATED cyclophilin; cyclophilin, peptidyl-prolyl-CIS/trans isomerase, spliceosome, U4/U6-60K protein, WD protein; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1qoi_A

Probab=100.00  E-value=5.3e-51  Score=349.44  Aligned_cols=172  Identities=53%  Similarity=0.870  Sum_probs=157.5

Q ss_pred             cccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCcccc
Q psy793            5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF   84 (414)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~   84 (414)
                      .....||+||||+++++|+.|+|+||||++.||+||+||++||+++++.  .++..+|+|+.||||+|+|||||||+..+
T Consensus         5 ~~~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~--~g~~~~Y~g~~FhRvi~~f~iQgGd~~~~   82 (177)
T 1mzw_A            5 NSSPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRK--DGVPIGYKGSTFHRVIKDFMIQGGDFVNG   82 (177)
T ss_dssp             CCCCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCEE--TTEECSSTTCBCCEEETTTEEEECCTTTS
T ss_pred             ccCCCCCEEEEEEEECCeeceeEEEEEcCCCCcHHHHHHHHHHhcccCC--cCccceECCCEEEEEECCCEEEcCCcccC
Confidence            3456799999999999999999999999999999999999999987743  23556799999999999999999999766


Q ss_pred             CCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCC
Q psy793           85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHP  164 (414)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~  164 (414)
                      ++                                            +++.++||..|++|.+.++|+.+|+||||+.+ |
T Consensus        83 ~G--------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~g-p  117 (177)
T 1mzw_A           83 DG--------------------------------------------TGVASIYRGPFADENFKLRHSAPGLLSMANSG-P  117 (177)
T ss_dssp             SS--------------------------------------------CCCCCTTSSCBCCCCCCSCCCSTTEEEECCSS-T
T ss_pred             CC--------------------------------------------CCCCccCCCcccCcccccccCCCCEEEEccCC-C
Confidence            55                                            56677888899999999999999999999999 9


Q ss_pred             CCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793          165 NTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQL  223 (414)
Q Consensus       165 ~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l  223 (414)
                      ++++||||||++++|+||++|+|||+|++||+||++|+.+++ .+++|..+|+|.+||+|
T Consensus       118 ~tngSQFfIt~~~~~~LDg~~~VFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~cG~l  177 (177)
T 1mzw_A          118 STNGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM  177 (177)
T ss_dssp             TCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             CCcceEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCCCCCEEEEeceeC
Confidence            999999999999999999999999999999999999999998 67899999999999875

>2z6w_A Peptidyl-prolyl CIS-trans isomerase; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin D; HET: BMT MLE CIT; 0.96A {Homo sapiens} SCOP: b.62.1.1 PDB: 3rcg_A* 3r49_A* 3r54_A 3r56_A* 3r57_A* 3r59_A* 3rcf_A* 3r4g_A* 3rci_X* 3rck_X* 3rcl_A* 3rd9_X* 3rda_X* 3rdb_A* 3rdc_A* 2bit_X 2biu_X 3qyu_A 3k0m_A 1ak4_A* ...

Probab=100.00  E-value=2e-50  Score=342.26  Aligned_cols=162  Identities=54%  Similarity=0.867  Sum_probs=151.4

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccc-cCCCcceEEeccceeccCCccccCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~-y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      .||+||||+++++|+.|+|+||||++.||+||+||++||+|..        +| |+|+.||||+|+|||||||+..+++ 
T Consensus         2 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~fhRvi~~f~iQgGd~~~~~g-   72 (165)
T 2z6w_A            2 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK--------GFGYKGSTFHRVIPSFMCQAGDFTNHNG-   72 (165)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCCSTTCBEEEEETTTEEEECCTTTSSS-
T ss_pred             CCCEEEEEEEECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCC--------CccCcCCEEEEEECCCEEEeCCccCCCC-
Confidence            3799999999999999999999999999999999999998643        45 9999999999999999999976555 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                 +++.++||..+++|.+.++|..+|+||||+.+ |+++
T Consensus        73 -------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~g-p~s~  108 (165)
T 2z6w_A           73 -------------------------------------------TGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTN  108 (165)
T ss_dssp             -------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCB
T ss_pred             -------------------------------------------CCCCcccCCcccCcccccccCCCCEEEEeeCC-CCCc
Confidence                                                       56667888889999999999889999999999 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      +||||||++++|+||++|+|||+|++||+||++|+.+++.+++|..+|+|.+||++
T Consensus       109 ~SQFfI~~~~~~~Ldg~~~vFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~~g~l  164 (165)
T 2z6w_A          109 GSQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQL  164 (165)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEEEEC
T ss_pred             ccEEEEEcCCCcccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCcEEEEEeEEE
Confidence            99999999999999999999999999999999999999888999999999999986

>2r99_A Peptidyl-prolyl CIS-trans isomerase E; CIS-trans isomerization, structural genomics consortium, SGC, alternative splicing, mRNA processing; 1.61A {Homo sapiens} SCOP: b.62.1.1 PDB: 3uch_A 1zmf_A

Probab=100.00  E-value=3.2e-50  Score=343.25  Aligned_cols=165  Identities=52%  Similarity=0.834  Sum_probs=152.2

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccc-cCCCcceEEeccceeccCCccccC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSRFHRIIPQFMIQGGDITNFN   85 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~-y~~~~f~rv~~~~~iq~G~~~~~~   85 (414)
                      ...||+||||+++++|+.|+|+||||++.||+||+||++||++..        +| |+|+.||||+|+|||||||+..++
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (173)
T 2r99_A            8 ARSNPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK--------GFGFKGSSFHRIIPQFMCQGGDFTNHN   79 (173)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCCSTTCBEEEEETTTEEEECCTTTSS
T ss_pred             ccCCCEEEEEEEECCccceeEEEEECCCCCcHHHHHHHHHhcccC--------CceecCCEEEEeeCCCEEEeCCcCCCC
Confidence            456899999999999999999999999999999999999998643        34 999999999999999999997665


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            +++.++||..|++|.+.++|+.+|+|+||+.+ |+
T Consensus        80 g--------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsmA~~g-p~  114 (173)
T 2r99_A           80 G--------------------------------------------TGGKSIYGKKFDDENFILKHTGPGLLSMANSG-PN  114 (173)
T ss_dssp             S--------------------------------------------SCCCBTTBSCBCCCCCCSCCCSSSEEEECCSS-TT
T ss_pred             C--------------------------------------------CCCCccCCCcccCcccCcccCCCcEEEEccCC-CC
Confidence            5                                            56677888889999999999999999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS  224 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l~  224 (414)
                      +++||||||++++|+||++|+|||+|++||+||++|+.+++.+++|..+|+|.+||++.
T Consensus       115 t~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~P~~~v~I~~cG~l~  173 (173)
T 2r99_A          115 TNGSQFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGEYV  173 (173)
T ss_dssp             CBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEECC
T ss_pred             CcccEEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHhCCCCCCCCCCCeEEEEeeeEC
Confidence            99999999999999999999999999999999999999999889999999999999863

>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A

Probab=100.00  E-value=3.1e-50  Score=341.42  Aligned_cols=163  Identities=52%  Similarity=0.837  Sum_probs=152.0

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .||+||||+.+++|+.|+|+||||++.||+||+||++||+|+.+.+       |+|+.||||+|+|||||||+...++  
T Consensus         1 ~~p~vf~di~i~~t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g--   71 (164)
T 3pmp_A            1 AMANVFFNISINDKPEGRIVFKLYDEAVPKTAKNFRELATGQHGFG-------YKDSIFHRVIPQFMLQGGDFTRHNG--   71 (164)
T ss_dssp             CCCCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCS-------STTCBEEEEETTTEEEECCTTTSSS--
T ss_pred             CCCEEEEEEEECCEEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCc-------ccCCEEEEEECCCeEEeCCCCCCCC--
Confidence            4899999999999999999999999999999999999998754322       9999999999999999999765555  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                .++.++||..+++|.+.++|+.+|+|+|||.+ |++++
T Consensus        72 ------------------------------------------~gg~si~g~~~~dE~~~l~h~~~G~lsma~~g-~~t~~  108 (164)
T 3pmp_A           72 ------------------------------------------TGGKSIYGEKFADENFQVKHTKPGLLSMANAG-ANTNG  108 (164)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECBSS-TTCBC
T ss_pred             ------------------------------------------CCCcccCCccccccccccCcCCCcEEEEeeCC-CCCcc
Confidence                                                      66778889999999999999999999999999 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      ||||||++++|+||++|+|||+|++||+||++|+++++.+++|..+|+|.+||+|
T Consensus       109 SQFfIt~~~~~~Ld~~~~vFG~Vv~G~~vv~~I~~~~~~~~~P~~~v~I~~cg~l  163 (164)
T 3pmp_A          109 SQFFITTVPTSWLDGKHVVFGEVIEGLDIVRKVEGKGSASGKTNATIKITDCGTV  163 (164)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEEC
T ss_pred             cEEEEECCCChhhCCCccEEEEEeCCHHHHHHHHhCCCCCCCcccCEEEEeCeEE
Confidence            9999999999999999999999999999999999999988999999999999986

>2haq_A Cyclophilin; rotamase, proline, isomerase, CIS-trans, protozoa, KAla-AZAR.; 1.97A {Leishmania donovani} PDB: 3eov_A* 3bt8_A

Probab=100.00  E-value=9.1e-50  Score=338.93  Aligned_cols=163  Identities=53%  Similarity=0.861  Sum_probs=150.1

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccc-cCCCcceEEeccceeccCCccccC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSRFHRIIPQFMIQGGDITNFN   85 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~-y~~~~f~rv~~~~~iq~G~~~~~~   85 (414)
                      ...+++||||+++++|+.|+|+||||++.||+||+||++||+|..        +| |+|+.||||+|+|||||||+..++
T Consensus         8 ~~~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~FhRvi~~f~iQgGd~~~~~   79 (172)
T 2haq_A            8 PEVTAKVYFDVMIDSEPLGRITIGLFGKDAPLTTENFRQLCTGEH--------GFGYKDSIFHRVIQNFMIQGGDFTNFD   79 (172)
T ss_dssp             CCCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCCSTTCBCCEEETTTEEEECCTTTSS
T ss_pred             CCCCCeEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHhccCC--------CcccCCCEEEEEECCCEEecCCccCCC
Confidence            356899999999999999999999999999999999999998744        45 999999999999999999976555


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            +++.|+||..+++|++.++|. +|+||||+.+ |+
T Consensus        80 g--------------------------------------------~gg~si~g~~f~dE~~~l~h~-~G~lsmAn~g-p~  113 (172)
T 2haq_A           80 G--------------------------------------------TGGKSIYGEKFADENLNVKHF-VGALSMANAG-PN  113 (172)
T ss_dssp             S--------------------------------------------SCCCCSSSSCBCCCCCCSCCC-TTEEEECCSS-TT
T ss_pred             C--------------------------------------------CCCccccCCcccCcCCCcccC-ceEEEEccCC-CC
Confidence            5                                            566788898999999999998 9999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL  223 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l  223 (414)
                      +++||||||++++|+||++|+|||+|++||+||++|+.+++. .++|..+|+|.+||+|
T Consensus       114 tngSQFfIt~~~~~~LDg~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l  172 (172)
T 2haq_A          114 TNGSQFFITTAPTPWLDGRHVVFGKVLDGMDVVLRIEKTKTNSHDRPVKPVKIVASGEL  172 (172)
T ss_dssp             CBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             CcccEEEEECCCCCccCCCEeEEEEEeCCHHHHHHHHhCCcCCCCcCCCCeEEEEeEEC
Confidence            999999999999999999999999999999999999999985 4599999999999875

>3rdd_A Peptidyl-prolyl CIS-trans isomerase A; beta barrel, cytosolic, inhibito isomerase-isomerase inhibitor complex; HET: EA4; 2.14A {Homo sapiens}

Probab=100.00  E-value=1.2e-49  Score=342.73  Aligned_cols=167  Identities=55%  Similarity=0.835  Sum_probs=153.5

Q ss_pred             ccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccC
Q psy793            6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFN   85 (414)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (414)
                      ....||+||||+++++++.|+|+||||++.||+||+||++||++++|.+       |+|+.||||+|+|||||||+..++
T Consensus        18 ~~~~~p~v~~di~i~~~~~G~I~ieL~~~~aP~t~~NF~~L~~~~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~~   90 (184)
T 3rdd_A           18 QGMVNPTVFFDIAVDGEPLGRVSFELFADKVPKTAENFRALSTGEKGFG-------YKGSCFHRIIPGFMCQGGDFTRHN   90 (184)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSCS-------STTCBCCEEETTTEEEECCTTTSS
T ss_pred             ccCCCCEEEEEEeECCEeeeEEEEEEeCCCCcHHHHHHHHHhccCcCcc-------cCCCEEEEccCCcEEEeCCCCCCC
Confidence            3456899999999999999999999999999999999999998866443       999999999999999999987655


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            .++.++||..+++|.+.++|+.+|+|+||+.+ |+
T Consensus        91 g--------------------------------------------~gg~si~g~~~~de~~~l~h~~~G~lsmA~~g-p~  125 (184)
T 3rdd_A           91 G--------------------------------------------TGGKSIYGEKFEDENFILKHTGPGILSMANAG-PN  125 (184)
T ss_dssp             S--------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TT
T ss_pred             C--------------------------------------------CCCcccCCCcccCcccccccCCCcEEEEEeCC-CC
Confidence            5                                            56677888999999999999999999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS  224 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l~  224 (414)
                      +++||||||++++|+||++|+|||+|++||+||++|+++++.+++|..+|+|.+||+|.
T Consensus       126 s~gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~g~P~~~v~I~~cG~l~  184 (184)
T 3rdd_A          126 TNGSQFFICTAKTEWLDGKHVVFGKVKEGMNIVEAMERFGSRNGKTSKKITIADCGQLE  184 (184)
T ss_dssp             CBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEECC
T ss_pred             CcccEEEEEeCCchhhCCCceEEEEEecCHHHHHHHHhcCCCCCCCcCCeEEEeCeEEC
Confidence            99999999999999999999999999999999999999999889999999999999873

>1z81_A Cyclophilin; structural genomics, structural genomics consortium, SGC, isomerase; 2.80A {Plasmodium yoelii yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=1.3e-49  Score=351.16  Aligned_cols=171  Identities=47%  Similarity=0.842  Sum_probs=157.2

Q ss_pred             ccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccC
Q psy793            6 CKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFN   85 (414)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (414)
                      ....||+||||+++++|+.|+|+||||++.||+||+||++||+++++.+  ++..||+|+.||||+|+|||||||+..++
T Consensus        55 ~~~~~~~V~~disi~~t~~G~I~ieL~~d~aP~tv~NF~~L~~~~~g~~--g~~~~Y~gt~FHRVi~~FmiQgGD~~~g~  132 (229)
T 1z81_A           55 TNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFINHN  132 (229)
T ss_dssp             SSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTTTSS
T ss_pred             cCCCCcEEEEEEeECCeecccEEEEEcCCCCCHHHHHHHHHhhCCCCCc--CCCceECCCEEEEEeCCCEEEcCCCcCCC
Confidence            4557999999999999999999999999999999999999999887543  35568999999999999999999997666


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            +++.++||..|++|.+.++|+++|+|+|||.+ |+
T Consensus       133 G--------------------------------------------~Gg~siyg~~f~dE~~~l~h~~~G~LsMAn~g-pn  167 (229)
T 1z81_A          133 G--------------------------------------------SGSLSIYGEKFDDENFDIKHDKEGLLSMANSG-PN  167 (229)
T ss_dssp             S--------------------------------------------CCCCBTTBSCCCCCCCCSCCCSTTEEEECCSS-SS
T ss_pred             C--------------------------------------------CCCCccCCCcccccccccccCCCcEEEeccCC-CC
Confidence            6                                            56678888899999999999999999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEE--echHHHHHHhccccCC--CCccccEEEEcCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVR--QGFGVAREVSYVEAEN--DKPLVTCTITNSGQL  223 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~--~G~~vv~~i~~~~~~~--~~P~~~i~I~~~g~l  223 (414)
                      +++||||||++++|+||++|+|||+|+  +||+||++|+.+++..  ++|..+|+|.+||++
T Consensus       168 tngSQFFIt~~~~~~LDg~~tVFG~Vv~~eGmdVv~~I~~~~t~~~~~~P~~~V~I~~cG~l  229 (229)
T 1z81_A          168 TNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL  229 (229)
T ss_dssp             CCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             CcccEEEEECCCCcccCCCeeEEEEEEecCcHHHHHHHHhCCCCCCCCCCCCCeEEEeCeeC
Confidence            999999999999999999999999999  9999999999999854  899999999999875

>3k2c_A Peptidyl-prolyl CIS-trans isomerase; ssgcid, NIH, niaid, SBRI, UW, decode, cytoplasm, rotamase, structural genomics; HET: PG5; 1.95A {Encephalitozoon cuniculi}

Probab=100.00  E-value=4e-49  Score=341.69  Aligned_cols=168  Identities=51%  Similarity=0.813  Sum_probs=154.1

Q ss_pred             cccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCcccc
Q psy793            5 ICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF   84 (414)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~   84 (414)
                      .....||+||||+++++|+.|+|+||||++.||+||+||++||+++.+.+       |+|+.||||+|+|||||||+...
T Consensus        22 ~~~~~~p~v~~di~i~~t~~G~I~ieL~~~~aP~tv~NF~~L~~g~~g~~-------Y~g~~FhRvi~~f~iQgGd~~~~   94 (193)
T 3k2c_A           22 MAKEASGNVYFDVYANEESLGRIVMKLEDDIVPKTAKNFRTLCERPKGEG-------YKGSTFHRIIPGFMVQGGDYTAH   94 (193)
T ss_dssp             CC--CTTCEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSCTTSS-------STTCBEEEEETTTEEEECCTTTS
T ss_pred             ccccCCCEEEEEEeECCEEeeEEEEEEcCCCChHHHHHHHHHhccccCCc-------ccCCEEEEEeCCCEEEeCCCCCC
Confidence            34567999999999999999999999999999999999999998755332       99999999999999999997665


Q ss_pred             CCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCC
Q psy793           85 NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHP  164 (414)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~  164 (414)
                      ++                                            .++.++||..+++|.+.++|+.+|+|+||+.+ |
T Consensus        95 ~g--------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~g-p  129 (193)
T 3k2c_A           95 NG--------------------------------------------TGGRSIYGEKFPDENFELKHTKEGILSMANCG-A  129 (193)
T ss_dssp             SS--------------------------------------------SCCCCTTSSCBCCCCCCSCCCSTTEEEECCSS-T
T ss_pred             CC--------------------------------------------cCCcccCCCcccccccccccCCCcEEEEEeCC-C
Confidence            55                                            56678888999999999999999999999999 9


Q ss_pred             CCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCcc--ccEEEEcCCCCC
Q psy793          165 NTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPL--VTCTITNSGQLS  224 (414)
Q Consensus       165 ~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~--~~i~I~~~g~l~  224 (414)
                      ++++||||||++++|+||++|+|||+|++||+||++|+++++.+++|.  .+|+|.+||+|.
T Consensus       130 ~t~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~g~P~~~~~v~I~~cG~l~  191 (193)
T 3k2c_A          130 HTNGSQFFITLGKTQWLDEKHVVFGEVVEGMDVVHKIAKYGSESGQVKKGYRIEIRDCGVLG  191 (193)
T ss_dssp             TCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCCTTCCEEEEEEEECC
T ss_pred             CCCccEEEEECCCCcccCCCccEEEEEeCCHHHHHHHHhcCCCCCcCccCccEEEEEceEeC
Confidence            999999999999999999999999999999999999999999889999  999999999986

>3ich_A Peptidyl-prolyl CIS-trans isomerase B; beta sandwich, cyclosporin, endoplasmic reticulum, glycoprot isomerase, rotamase; 1.20A {Homo sapiens} PDB: 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=2.2e-49  Score=341.84  Aligned_cols=168  Identities=49%  Similarity=0.808  Sum_probs=153.2

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccc-cCCCcceEEeccceeccCCccccCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALH-FTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~-y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      .+++||||+++++|+.|+|+||||++.||+||+||++||+|+.        +| |+|+.||||+|+|||||||+..+++ 
T Consensus        14 ~~~~v~~di~i~~t~~G~i~ieL~~~~aP~t~~NF~~L~~g~~--------g~~Y~g~~FhRvi~~f~iQgGd~~~~~g-   84 (188)
T 3ich_A           14 VTVKVYFDLRIGDEDVGRVIFGLFGKTVPKTVDNFVALATGEK--------GFGYKNSKFHRVIKDFMIQGGDFTRGDG-   84 (188)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT--------SCSSTTCBCCEEETTTEEEECCTTTSSS-
T ss_pred             cCCeEEEEEEECCEeceeEEEEEcCCCCcHHHHHHHHHhcccC--------CccccCCEEEEEECCCEEEcCCccCCCC-
Confidence            4789999999999999999999999999999999999998644        45 9999999999999999999765555 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                 +++.|+||..|++|.+.++|+.+|+|||||.+ |+++
T Consensus        85 -------------------------------------------~gg~si~g~~f~dE~~~l~h~~~G~lsmAn~g-p~tn  120 (188)
T 3ich_A           85 -------------------------------------------TGGKSIYGERFPDENFKLKHYGPGWVSMANAG-KDTN  120 (188)
T ss_dssp             -------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCB
T ss_pred             -------------------------------------------CCCccccCCcccccccCcccCCCeEEEEccCC-CCCc
Confidence                                                       56678889999999999999999999999999 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCCCCCCCc
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSLNEDW  229 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l~~~~~~  229 (414)
                      +||||||++++|+||++|+|||+|++||+||++|+.+++. .++|..+|+|.+|+++....|+
T Consensus       121 gSQFfIt~~~~~~LDg~~tVFG~Vv~G~dvv~~I~~~~~~~~~~P~~~v~I~~~~~l~~~~Pf  183 (188)
T 3ich_A          121 GSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVESTKTDSRDKPLKDVIIADCGKIEVEKPF  183 (188)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEE
T ss_pred             ccEEEEECCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCeECCCEEEEEeEEEecCCCC
Confidence            9999999999999999999999999999999999999984 5699999999999998554443

>4fru_A Cyclophilin B, peptidyl-prolyl CIS-trans isomerase; cyclophilin-type ppiase, peptidyl-prolyl CIS-trans isomerase chaperone, foldase; HET: ME2 PEG; 1.10A {Equus caballus} PDB: 4frv_A* 3ich_A 3ici_A* 1cyn_A* 2esl_A* 2rmc_A* 1h0p_A 1xo7_A 1xq7_A*

Probab=100.00  E-value=3.8e-49  Score=341.13  Aligned_cols=173  Identities=50%  Similarity=0.816  Sum_probs=157.0

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      ...+++||||+++++++.|+|+||||++.||+||+||++||+++.|.       +|+|+.||||+|+|||||||+..+++
T Consensus         9 p~~~~~v~~di~i~~~~~G~i~ieL~~~~aP~t~~NF~~L~~~~~g~-------~Y~g~~FhRvi~~f~iQgGd~~~~~g   81 (185)
T 4fru_A            9 PKVTVKVYFDLRIGDEDIGRVVIGLFGKTVPKTVDNFVALATGEKGF-------GYKDSKFHRVIKDFMIQGGDFTRGDG   81 (185)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCcCcEEEEEEEECCEecceEEEEEeCCCCcHHHHHHHHHHhcCCCC-------eEcCCEEEEeeCCCeEEECCCCCCCC
Confidence            34588999999999999999999999999999999999999874321       49999999999999999999976655


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                  .++.++||..+++|++.++|+.+|+|+|||.+ |++
T Consensus        82 --------------------------------------------~gg~si~g~~f~de~~~~~h~~~G~lsma~~g-p~t  116 (185)
T 4fru_A           82 --------------------------------------------TGGKSIYGERFPDENFKLKHYGPGWVSMANAG-KDT  116 (185)
T ss_dssp             --------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTC
T ss_pred             --------------------------------------------CCCccccCCccCccccccCcCCCeEEEEeeCC-CCC
Confidence                                                        56778888999999999999999999999999 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCCCCCCCcCc
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSLNEDWGV  231 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l~~~~~~~i  231 (414)
                      ++||||||++++|+||++|+|||+|++||+||++|+++++. +++|..+|+|.+||++....++.+
T Consensus       117 ~~SQFfI~~~~~~~Ld~~~~vFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~g~l~~~~Pf~~  182 (185)
T 4fru_A          117 NGSQFFITTVKTAWLDGKHVVFGKVLEGMEVVRKVETTKTDGRDKPLKDVTIADCGKIEVEKPFAI  182 (185)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEEEE
T ss_pred             cceEEEEEeCCCcccCCCccEEEEEeCCHHHHHHHHhCCCCCCCcCCCCEEEEEceEEecCCCCcc
Confidence            99999999999999999999999999999999999999984 689999999999999876555543

>2ose_A Probable peptidyl-prolyl CIS-trans isomerase; cyclophilin; 2.04A {Mimivirus}

Probab=100.00  E-value=1.9e-47  Score=340.26  Aligned_cols=178  Identities=29%  Similarity=0.445  Sum_probs=148.1

Q ss_pred             cccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC---CCCcc----c--c-cCCCcceEEec
Q psy793            3 KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG---KLGKA----L--H-FTGSRFHRIIP   72 (414)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~---~~~~~----~--~-y~~~~f~rv~~   72 (414)
                      ..+....||+||||+.|++|+.|+|+||||++.||+||+||++||+++....   ..++.    +  | |+|+.||||+|
T Consensus         7 ~~p~~~~~p~v~~di~i~~t~~G~I~ieL~~d~aP~tv~NF~~L~~g~~~~~~p~~~~~~~~~~G~~~~Y~gt~FHRVi~   86 (234)
T 2ose_A            7 DLPNSGKNPRVYMDIVLNNEIIGRLQIKLFRDAFPAGVENFVQLTNGKTYRVNSNGTGKYKYNRHINRTYEGCKFHNVLH   86 (234)
T ss_dssp             SCCCCCSSCEEEEEEEETTEEEEEEEEEECGGGCHHHHHHHHHHHHTCCCC---------------CCCSTTCBCCEEET
T ss_pred             ccCcCCCCCEEEEEEEECCcccceEEEEEcCCCCcHHHHHHHHHhcCCccccccccccccccccCCceEECCcEEEEEEC
Confidence            4566778999999999999999999999999999999999999999762110   00111    3  6 99999999999


Q ss_pred             cceeccCCccccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCc-----CCCCccc
Q psy793           73 QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPC-----FEDENFK  147 (414)
Q Consensus        73 ~~~iq~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~-----~~~e~~~  147 (414)
                      +|||||||+..+++++                                            +.|+||..     |+  ++.
T Consensus        87 ~FmiQgGd~~~g~G~G--------------------------------------------g~siyg~~~~p~~f~--~~~  120 (234)
T 2ose_A           87 NNYIVSGDIYNSNGSS--------------------------------------------AGTVYCDEPIPPVFG--DYF  120 (234)
T ss_dssp             TTEEEECCCC----CC--------------------------------------------CCCTTTTCCBCCCCC--SCC
T ss_pred             CCEEEcCCccCCCCCC--------------------------------------------CccccCCccCccccc--CcC
Confidence            9999999976666644                                            44555554     44  457


Q ss_pred             ccccccceeeecc----CCCCCCccchhhhhcCC------CCCCCCcceeeEEEEechHHHHHHhccccCC-CCccccEE
Q psy793          148 LKHKFEGQLSLAN----TGHPNTNNSQFFITLAP------CPHLDGKNVVFGCVRQGFGVAREVSYVEAEN-DKPLVTCT  216 (414)
Q Consensus       148 ~~~~~~g~l~~~~----~~~~~~~~sqf~it~~~------~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~-~~P~~~i~  216 (414)
                      ++|+++|+|||||    .+ |++++||||||+++      +|||||+|+|||+|++||+||++|+.+++.. ++|..+|+
T Consensus       121 l~h~~~G~lsMAn~~~~~g-pntngSQFFIt~~~~~~~~g~p~LDg~~tVFG~Vv~GmdVv~~I~~~~t~~~~~P~~~V~  199 (234)
T 2ose_A          121 YPHESKGLLSLVPYTDESG-NRYYDSTFMITLDDIRPSNVLDELDRDQVVIGQVYGGLDVLDKINSMIKPYAGRKYPTFS  199 (234)
T ss_dssp             CCSCSTTEEEECCEECTTS-CEEBCSCEEEESSCCCTTSSGGGSCTTSEEEEEEEECHHHHHHHHHHTCCCTTCCCCCEE
T ss_pred             ccCCCCCEEEEecccccCC-CCCccceEEEEecCccccCCCcccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCccCCEE
Confidence            8998999999999    78 99999999999999      9999999999999999999999999999854 89999999


Q ss_pred             EEcCCCCCCCC
Q psy793          217 ITNSGQLSLNE  227 (414)
Q Consensus       217 I~~~g~l~~~~  227 (414)
                      |.+|+++..+.
T Consensus       200 I~~~~~l~~p~  210 (234)
T 2ose_A          200 IGKCGAYLDSS  210 (234)
T ss_dssp             EEEEEECCCHH
T ss_pred             EEEEEEecCCc
Confidence            99999987653

>2c3b_A Ppiase, cyclophilin; isomerase, 3D domain swapping, misfolding, Asp F 11, allergen, rotamase; 1.85A {Aspergillus fumigatus} SCOP: b.62.1.1

Probab=100.00  E-value=6.9e-48  Score=328.54  Aligned_cols=160  Identities=54%  Similarity=0.855  Sum_probs=120.0

Q ss_pred             EEEEEEeeC--C---eeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793           12 IVFLDVSIG--E---EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus        12 ~~~~~~~~~--~---~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      +||||++++  +   |+.|+|+||||++.||+||+||++||+|..+.+       |+|+.||||+|+|||||||+..+++
T Consensus         4 ~vf~di~i~~~~~~~T~~G~i~ieL~~~~aP~t~~NF~~L~~g~~g~~-------Y~g~~fhRvi~~f~iQgGd~~~~~g   76 (172)
T 2c3b_A            4 QVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTFHRIIPNFMIQGGDFTRGNG   76 (172)
T ss_dssp             CEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-------STTCBCCEEETTTEEEECC------
T ss_pred             EEEEEEEeCCCCceecccccEEEEEcCCCCcHHHHHHHHHhccCCCcc-------cCCCEEEEEeCCCEEEeCCcCCCCC
Confidence            799999998  5   556999999999999999999999998754322       9999999999999999999654555


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                  +++.|+||..+++|.+.++|+.+|+|+|||.+ |++
T Consensus        77 --------------------------------------------~gg~si~g~~f~dE~~~~~h~~~G~lsmA~~g-p~t  111 (172)
T 2c3b_A           77 --------------------------------------------TGGRSIYGDKFADENFSRKHDKKGILSMANAG-PNT  111 (172)
T ss_dssp             ------------------------------------------------------------CHHHHHTCEEEEC-------
T ss_pred             --------------------------------------------CCCcccCCCcccCcccccccCCCeEEEEeeCC-CCC
Confidence                                                        56778888899999989999999999999998 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEe--chHHHHHHhccccCCC--CccccEEEEcCCCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQ--GFGVAREVSYVEAEND--KPLVTCTITNSGQL  223 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~--G~~vv~~i~~~~~~~~--~P~~~i~I~~~g~l  223 (414)
                      ++||||||++++|+||++|+|||+|++  ||+||++|+++++..+  +|..+|+|.+||++
T Consensus       112 ~gSQFfIt~~~~~~LDg~~tvFG~Vv~~~G~dvv~~I~~~~t~~~~~~P~~~v~I~~cG~l  172 (172)
T 2c3b_A          112 NGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  172 (172)
T ss_dssp             ---CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             cccEEEEECCCCCccCCCeeEEEEEEecCCHHHHHHHHhCCCCCCCccCCCCeEEEeCeeC
Confidence            999999999999999999999999999  9999999999998655  99999999999875

>2ok3_A Peptidyl-prolyl CIS-trans isomerase-like 3; beta-barrel, helix, disulfide bridge; 2.00A {Homo sapiens} SCOP: b.62.1.1 PDB: 1xyh_A 2oju_A*

Probab=100.00  E-value=1.5e-45  Score=311.33  Aligned_cols=151  Identities=45%  Similarity=0.674  Sum_probs=136.9

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||++.||+||+||++||++++          |+|+.||||+|+|||||||+. +++              
T Consensus         6 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g~----------Y~g~~fhRvi~~f~iQgGd~~-~~g--------------   60 (161)
T 2ok3_A            6 HTDVGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPT-GTG--------------   60 (161)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTTT----------TTTCBCCEEETTTEEEECCTT-SSS--------------
T ss_pred             EeCCccEEEEEcCCCCcHHHHHHHHHhhhcc----------cCCCEEEEEECCCEEecCCCC-CCC--------------
Confidence            4677999999999999999999999997654          999999999999999999986 334              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .++.++||..+++|.. .++|+++|+||||+.+ |++++||||||++++|
T Consensus        61 ------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsma~~g-p~s~~SQFfI~~~~~~  109 (161)
T 2ok3_A           61 ------------------------------RGGNSIWGKKFEDEYSEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQP  109 (161)
T ss_dssp             ------------------------------SCCCCTTSSCBCCCCCTTCCSCSTTEEEECCSS-TTCBCSCEEEESSCCG
T ss_pred             ------------------------------CCCCcccCCccccccCcCcCcCCCeEEEEecCC-CCCcceEEEEEcCCCC
Confidence                                          5667888889999974 7889899999999999 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhccccCC--CCccccEEEEcCCCCCCCC
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEAEN--DKPLVTCTITNSGQLSLNE  227 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~~--~~P~~~i~I~~~g~l~~~~  227 (414)
                      +||++|+|||+|++||++|++|+++++..  ++|..+|+|.+|.++..++
T Consensus       110 ~Ldg~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~P~~~v~I~~~~i~~~Pf  159 (161)
T 2ok3_A          110 HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANPF  159 (161)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCSC
T ss_pred             ccCCCEeEEEEEeCCHHHHHHHHhCCccCCCCCcCCCeEEEEEEEecCCC
Confidence            99999999999999999999999999854  7999999999999887553

>2x7k_A Peptidyl-prolyl CIS-trans isomerase-like 1; isomerase-immunosuppressant complex, immunosuppressant; HET: MLE MVA BMT ABA SAR; 1.15A {Homo sapiens} PDB: 1xwn_A

Probab=100.00  E-value=2.5e-45  Score=310.97  Aligned_cols=154  Identities=47%  Similarity=0.744  Sum_probs=139.5

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .++.|.|+++.     |+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+. +++  
T Consensus        10 ~~~~v~l~t~~-----G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~fhRvi~~f~iQgGd~~-~~g--   71 (166)
T 2x7k_A           10 QPPNVYLETSM-----GIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHRIIKDFMIQGGDPT-GTG--   71 (166)
T ss_dssp             CCSEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHHHT----------TTTTEECCEEETTTEEEECCTT-SSS--
T ss_pred             CCCEEEEEeCC-----CcEEEEEccCCCCHHHHHHHHHHhcC----------CCCCCEEEEEECCCEEEcCCCC-CCC--
Confidence            57889998765     99999999999999999999999654          5999999999999999999986 334  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                .++.++||..+++|. ..++|.++|+||||+.+ |+++
T Consensus        72 ------------------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsmAn~g-p~s~  108 (166)
T 2x7k_A           72 ------------------------------------------RGGASIYGKQFEDELHPDLKFTGAGILAMANAG-PDTN  108 (166)
T ss_dssp             ------------------------------------------SCCCCTTSSCBCCCCCTTSCCCSTTEEEECBSS-TTCB
T ss_pred             ------------------------------------------CCCCccCCCccccccccccCCCCCeEEEEeeCC-CCCc
Confidence                                                      566788888999997 58899889999999999 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCC
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQL  223 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l  223 (414)
                      +||||||++++|+||++|+|||+|++||+||++|+.+++. .++|..+|+|.+|.++
T Consensus       109 gSQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~i~I~~~~i~  165 (166)
T 2x7k_A          109 GSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPS  165 (166)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTSCBCTTSCBSSCCEEEEEEEC
T ss_pred             cceEEEECCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEe
Confidence            9999999999999999999999999999999999999984 4799999999988654

>2poe_A Cyclophilin-like protein, putative; cryptosporidium parvum cyclophilin isomerase, structural genomics; 2.01A {Cryptosporidium parvum iowa II} PDB: 2qer_A

Probab=100.00  E-value=3.5e-45  Score=314.83  Aligned_cols=152  Identities=39%  Similarity=0.601  Sum_probs=137.3

Q ss_pred             eeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCCc
Q psy793           22 EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN  101 (414)
Q Consensus        22 ~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~~  101 (414)
                      |+.|+|+||||++.||+||+||++||+++          ||+|+.||||+|+|||||||+. +++               
T Consensus        23 t~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~-~~g---------------   76 (185)
T 2poe_A           23 TNYGDLKFELFCSQCPKACKNFLALSASG----------YYKNTIFHKNIKGFIIQGGDPT-GTG---------------   76 (185)
T ss_dssp             ETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTEEEEEECTTSEEEEEETT-SSS---------------
T ss_pred             ecCccEEEEEeCCCCcHHHHHHHHHhccC----------CCCCCEEEEEECCCEEEcCCCC-CCC---------------
Confidence            66799999999999999999999999655          4999999999999999999986 344               


Q ss_pred             ccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCC---CCCccchhhhhcCC
Q psy793          102 FKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGH---PNTNNSQFFITLAP  177 (414)
Q Consensus       102 ~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~---~~~~~sqf~it~~~  177 (414)
                                                   .++.++||..+++|. +.++|+.+|+|||||.+.   |++++||||||+++
T Consensus        77 -----------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~g~~~~p~s~gSQFFIt~~~  127 (185)
T 2poe_A           77 -----------------------------KGGESIYGRYFDDEIYPELKYDRRGILSMASKGASKKPNTNGSQFFITYSS  127 (185)
T ss_dssp             -----------------------------SCCCBTTBSCBCCCCCTTSCCCSTTEEEECCSCC-CCCSCBCSCEEEESSC
T ss_pred             -----------------------------CCCCccCCCcccccccCCCccCCCeEEEEecCCCCCCCCCccceEEEECCC
Confidence                                         566788899999997 788999999999999986   99999999999999


Q ss_pred             CCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCC
Q psy793          178 CPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNED  228 (414)
Q Consensus       178 ~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~  228 (414)
                      +|+||++|+|||+|++||+||++|+.+++ ..++|..+|+|.+|+++..+++
T Consensus       128 ~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i~~dPf~  179 (185)
T 2poe_A          128 LPQLNGEYVIFGKLIDGFETLNTLENCPSDKSHKPIDEIIIKDIVIHSNPIA  179 (185)
T ss_dssp             CGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTSCBSSCCEEEEEEEECCC--
T ss_pred             CCccCCCeeEEEEEeCCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEECCCCC
Confidence            99999999999999999999999999998 4589999999999999875543

>2b71_A Cyclophilin-like protein; structural genomics, structural genomics consortium, SGC, isomerase; 2.50A {Plasmodium yoelii} SCOP: b.62.1.1

Probab=100.00  E-value=4.5e-45  Score=315.86  Aligned_cols=158  Identities=42%  Similarity=0.686  Sum_probs=140.0

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      ..++.|+|++..     |+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+. +++ 
T Consensus        36 ~~~~~V~l~T~~-----G~I~ieL~~~~aP~tv~NF~~L~~~g----------~Y~g~~FhRVi~~f~iQgGd~~-~~g-   98 (196)
T 2b71_A           36 TERGYITIYTNL-----GDFEVELYWYHSPKTCLNFYTLCEMG----------FYDNTIFHRVIPNFVIQGGDPT-GTG-   98 (196)
T ss_dssp             HHSCEEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEEEEEEETTTEEEEEETT-SSS-
T ss_pred             CCCcEEEEEeCC-----CCEEEEEeCCCCcHHHHHHHHHhhcC----------CcCCCEEEEEeCCcEEEcCCCC-CCC-
Confidence            456788887665     99999999999999999999999654          5999999999999999999986 334 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCC
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                 .++.++||..+++|. ..++|+.+|+|+||+.+ |++
T Consensus        99 -------------------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsMAn~g-pns  134 (196)
T 2b71_A           99 -------------------------------------------KGGKSIYGEYFEDEINKELKHTGAGILSMSNNG-PNT  134 (196)
T ss_dssp             -------------------------------------------SCCCBTTBSCBCCCCCTTCCCCSTTEEEECCSS-TTC
T ss_pred             -------------------------------------------CCCCccCCCcccccccCCcCcCCCeEEEEccCC-CCC
Confidence                                                       567788888999994 67899899999999999 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLN  226 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~  226 (414)
                      ++||||||++++|+||++|+|||+|++||+||++|+.+++ ..++|..+|+|.+|.++..+
T Consensus       135 ~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~i~~dP  195 (196)
T 2b71_A          135 NSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTSTAVNA  195 (196)
T ss_dssp             BSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEEC----
T ss_pred             cccEEEEECCCCCccCCCEeEEEEEecCHHHHHHHHhCCcCCCCCCCCCeEEEEEEEecCC
Confidence            9999999999999999999999999999999999999998 45899999999999987643

>2fu0_A Cyclophilin, putative; PFE0505W, cyclosporin-binding domain, structura genomics, structural genomics consortium, SGC, unknown FUNC; 1.80A {Plasmodium falciparum} SCOP: b.62.1.1

Probab=100.00  E-value=8.9e-45  Score=305.66  Aligned_cols=152  Identities=43%  Similarity=0.645  Sum_probs=136.2

Q ss_pred             CcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCC
Q psy793           10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGG   89 (414)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (414)
                      .+.|.|++.     .|+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+. +++   
T Consensus         5 ~~~v~~~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~fhRvi~~f~iQgGd~~-~~g---   65 (160)
T 2fu0_A            5 PKSAIIYTT-----MGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPS-GDG---   65 (160)
T ss_dssp             CCEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTT-SSS---
T ss_pred             CCEEEEEec-----CccEEEEEeCCCChHHHHHHHHHhccC----------ccCCCEEEEEECCCEEEeCCcC-CCC---
Confidence            456666554     599999999999999999999999654          5999999999999999999985 334   


Q ss_pred             ccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCcc
Q psy793           90 ESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                               .++.++||..+++|.. .++|+.+|+|+||+.+ |++++
T Consensus        66 -----------------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~g-p~s~~  103 (160)
T 2fu0_A           66 -----------------------------------------TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCG-PNTNG  103 (160)
T ss_dssp             -----------------------------------------SCCCCTTSSCBCCCCBTTBCSSSSSEEEECCSS-TTCBC
T ss_pred             -----------------------------------------CCCCcccCCCccccccCCcccCCceEEEEecCC-CCCcc
Confidence                                                     5667888999999987 6899889999999999 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQ  222 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~  222 (414)
                      ||||||++++|+||++|+|||+|++||+||++|+.+++. .++|..+|+|.++.+
T Consensus       104 SQFfI~~~~~~~Ldg~~tvFG~Vv~G~dvv~~I~~~~t~~~~~P~~~v~I~~~~v  158 (160)
T 2fu0_A          104 SQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNIKI  158 (160)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEEEE
T ss_pred             cEEEEECCCCCccCCCcEEEEEEEcCHHHHHHHHhCCcCCCCCcCCCeEEEEEEE
Confidence            999999999999999999999999999999999999984 689999999988754

>1zkc_A Peptidyl-prolyl CIS-trans isomerase like 2; CIS-trans isomerization, peptidylprolyl isomerase, protein- folding, structural genomics consortium; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=8.8e-45  Score=313.89  Aligned_cols=158  Identities=43%  Similarity=0.671  Sum_probs=140.9

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      ..+.+|.|++.     .|+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+. +++ 
T Consensus        17 ~~~~~v~l~T~-----~G~I~ieL~~~~aP~tv~NF~~L~~~g----------~Ydg~~FhRVi~~f~iQgGd~~-~~g-   79 (197)
T 1zkc_A           17 RGSGYVRLHTN-----KGDLNLELHCDLTPKTCENFIRLCKKH----------YYDGTIFHRSIRNFVIQGGDPT-GTG-   79 (197)
T ss_dssp             CSCEEEEEEET-----TEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEEEEEEETTTEEEECCTT-SSS-
T ss_pred             CCCcEEEEEeC-----CccEEEEEcCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCCEEEcCCCC-CCC-
Confidence            34556777655     499999999999999999999999654          5999999999999999999986 334 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCC-cccccccccceeeeccCCCCCC
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e-~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                 .++.++||..|++| ...++|+.+|+|+||+.+ |++
T Consensus        80 -------------------------------------------~Gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~g-p~s  115 (197)
T 1zkc_A           80 -------------------------------------------TGGESYWGKPFKDEFRPNLSHTGRGILSMANSG-PNS  115 (197)
T ss_dssp             -------------------------------------------SCCCBTTBSCBCCCCCTTCCSCSTTEEEECCSS-TTC
T ss_pred             -------------------------------------------CCCCccCCCccccccCcCcCCCCceEEEEecCC-CCC
Confidence                                                       56778889999999 478899999999999999 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCC--CCccccEEEEcCCCCCCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAEN--DKPLVTCTITNSGQLSLN  226 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~--~~P~~~i~I~~~g~l~~~  226 (414)
                      ++||||||++++|+||++|+|||+|++||+||++|+.+++..  ++|..+|+|.+|+++..+
T Consensus       116 ngSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~i~I~~~~v~~dP  177 (197)
T 1zkc_A          116 NRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDP  177 (197)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEECT
T ss_pred             cccEEEEEcCCCCccCCCccEEEEEEcCHHHHHHHHcCCCCCCCCCcCCCeEEEEEEEEcCC
Confidence            999999999999999999999999999999999999999854  899999999999987644

>2a2n_A Peptidylprolyl isomerase domain and WD repeat CON; CIS-trans isomerization, protein-folding, peptidylprolyl ISO structural genomics; 1.65A {Homo sapiens} SCOP: b.62.1.1

Probab=100.00  E-value=3.1e-44  Score=306.42  Aligned_cols=153  Identities=44%  Similarity=0.652  Sum_probs=135.8

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      .....|.+     +|+.|+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+. +++ 
T Consensus        19 ~~~~~v~~-----~t~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~-~~g-   81 (176)
T 2a2n_A           19 RVSDSAII-----HTSMGDIHTKLFPVECPKTVENFCVHSRNG----------YYNGHTFHRIIKGFMIQTGDPT-GTG-   81 (176)
T ss_dssp             CCCSEEEE-----EETTEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBCCEEETTTEEEECCTT-SSS-
T ss_pred             CCCCEEEE-----EecCccEEEEEeCCCChHHHHHHHHHhhcC----------ccCCCEEEEEECCcEEEccCCC-CCC-
Confidence            33445555     455699999999999999999999999654          5999999999999999999985 334 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCC
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                 .++.++||..+++|.. .++|+.+|+|+||+.+ |++
T Consensus        82 -------------------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsmA~~g-p~s  117 (176)
T 2a2n_A           82 -------------------------------------------MGGESIWGGEFEDEFHSTLRHDRPYTLSMANAG-SNT  117 (176)
T ss_dssp             -------------------------------------------SCCCCTTSSCBCCCCCTTCCSCSSSEEEECCSS-TTC
T ss_pred             -------------------------------------------CCCCcccCCccccccccccccCCceEEEEEeCC-CCC
Confidence                                                       5677888999999987 6899889999999999 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC--CCCccccEEEEcCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE--NDKPLVTCTITNSG  221 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~--~~~P~~~i~I~~~g  221 (414)
                      ++||||||++++|+||++|+|||+|++||+||++|+.+++.  +++|..+|+|.++.
T Consensus       118 ~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~~P~~~v~I~~v~  174 (176)
T 2a2n_A          118 NGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT  174 (176)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEE
T ss_pred             cccEEEEECCCCCccCCCeeEEEEEeCCHHHHHHHHcCCccCCCCccCCCeEEEEEE
Confidence            99999999999999999999999999999999999999986  78999999998764

>2k7n_A Peptidyl-prolyl CIS-trans isomerase-like 1; beta barrel, disorder-order transition, HOOK-like, mRNA processing, mRNA splicing, rotamase; NMR {Homo sapiens}

Probab=100.00  E-value=3.2e-44  Score=311.41  Aligned_cols=159  Identities=45%  Similarity=0.703  Sum_probs=143.7

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .++.|+|++..     |+|+||||++.||+||+||++||+.          +||+|+.||||+|+|||||||+. .++  
T Consensus        10 ~~~~V~l~T~~-----G~I~ieL~~d~aP~tv~NF~~L~~~----------g~Ydg~~FhRVi~~F~iQgGd~~-~~g--   71 (203)
T 2k7n_A           10 QPPNVYLETSM-----GIIVLELYWKHAPKTCKNFAELARR----------GYYNGTKFHRIIKDFMIQGGDPT-GTG--   71 (203)
T ss_dssp             CCSEEEEEESS-----CEEEEEECTTTCTTHHHHHHHHHHH----------TCGGGCEEEEEETTTEEEEECSS-SSS--
T ss_pred             CCCEEEEEeCC-----CcEEEEEccCCCcHHHHHHHHHHhc----------CccCCCEEEEEeCCcEEEcCCCC-CCC--
Confidence            57899998766     9999999999999999999999965          45999999999999999999986 333  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                .++.++||..|++|. ..++|.++|+|+||+.+ |+++
T Consensus        72 ------------------------------------------~gg~si~g~~f~dE~~~~l~h~~~G~lsMAn~g-pnsn  108 (203)
T 2k7n_A           72 ------------------------------------------RGGASIYGKQFEDELHPDLKFTGAGILAMANAG-PDTN  108 (203)
T ss_dssp             ------------------------------------------SCCCTTSCSCBCCCCCCSSCCCSSCEEEEEESS-TTCE
T ss_pred             ------------------------------------------CCCCccCCCcccccccccccCCCCeEEEEeeCC-CCCc
Confidence                                                      566788888999997 58899889999999999 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCC
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNED  228 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~  228 (414)
                      +||||||++++|+||++|+|||+|++||+||++|+.+++ ..++|..+|+|.+|+++.....
T Consensus       109 gSQFFIt~~~~~~LDg~~tVFG~VveGmdvv~kI~~~~t~~~~~P~~~V~I~~~~v~~~~~s  170 (203)
T 2k7n_A          109 GSQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKAYPSGGGGS  170 (203)
T ss_dssp             EEEEEEESSCCCSSTTTSCEEEEEESCHHHHHHHHSCCEEETTEECCCCBEEEEEECCCCCC
T ss_pred             ccEEEEEcCCCCccCCCeeEEEEEEcCHHHHHHHHcCCcCCCCCcCCCeEEEEEEEEecCCC
Confidence            999999999999999999999999999999999999998 4579999999999998876644

>1w74_A Peptidyl-prolyl CIS-trans isomerase A; cyclophilin, ppiase, RV0009, rotamase, structural proteomics in europe, spine; 2.6A {Mycobacterium tuberculosis} SCOP: b.62.1.1

Probab=100.00  E-value=3.2e-44  Score=309.71  Aligned_cols=162  Identities=36%  Similarity=0.523  Sum_probs=140.1

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCC--C---CcccccCCCcceEEeccceeccCCc
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGK--L---GKALHFTGSRFHRIIPQFMIQGGDI   81 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~--~---~~~~~y~~~~f~rv~~~~~iq~G~~   81 (414)
                      ...++.|.|++..     |+|+||||++.||+||+||++||+|..+.+.  .   .+.+||+|+.||||+|+|||||||+
T Consensus        20 ~~~~~~v~l~t~~-----G~I~ieL~~~~aP~tv~NF~~L~tG~~~~~~~~~g~~~~~~~Y~g~~FhRVi~~fmiQgGd~   94 (191)
T 1w74_A           20 PLATATATLHTNR-----GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDP   94 (191)
T ss_dssp             -CCSEEEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCT
T ss_pred             CCCCeEEEEEecc-----eeEEEEEcCCCChHHHHHHHHHhcCCcccccccccccccCCccCCCEEEEEeCCCEEecCCC
Confidence            3446777776554     9999999999999999999999998876431  1   1458999999999999999999998


Q ss_pred             cccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCC-cccccccccceeeecc
Q psy793           82 TNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLAN  160 (414)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e-~~~~~~~~~g~l~~~~  160 (414)
                      . +++                                            +++   ||..|++| .+.++|+.+|+|+|||
T Consensus        95 ~-g~G--------------------------------------------~gg---~g~~f~dE~~~~l~h~~~G~lsMAn  126 (191)
T 1w74_A           95 T-GTG--------------------------------------------RGG---PGYKFADEFHPELQFDKPYLLAMAN  126 (191)
T ss_dssp             T-SSS--------------------------------------------SCC---SSCCBCCCCCTTCCSCSSSEEEECC
T ss_pred             C-CCC--------------------------------------------CCC---CCCccccccccCCCcCCCcEEEEee
Confidence            4 233                                            233   57788999 4789999999999999


Q ss_pred             CCCCCCccchhhhhcCCCCCCCCcceeeEEEEe--chHHHHHHhcccc-CCCCccccEEEEcCCC
Q psy793          161 TGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQ--GFGVAREVSYVEA-ENDKPLVTCTITNSGQ  222 (414)
Q Consensus       161 ~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~--G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~  222 (414)
                      .+ |++++||||||++++|+||++|+|||+|++  ||+||++|+.+++ ..++|..+|+|.+|++
T Consensus       127 ~g-pntngSQFFIt~~~~~~LDg~~tVFG~Vv~~~Gmdvv~~I~~~~t~~~~~P~~~v~I~~~~i  190 (191)
T 1w74_A          127 AG-PGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESITI  190 (191)
T ss_dssp             SS-TTCBSSCEEEESSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEEE
T ss_pred             CC-CCCccceEEEEcCCCcccCCCeeEEEEEEECCCHHHHHHHHcCCcCCCCCcCCCeEEEEEEE
Confidence            99 999999999999999999999999999999  9999999999998 4689999999999875

>3bo7_A Peptidyl-prolyl CIS-trans isomerase cyclophilin-T; isomerase-immunosuppressant complex, immunosuppressant, cyclophilin, structural G structural genomics consortium, SGC; HET: BMT; 2.35A {Toxoplasma gondii}

Probab=100.00  E-value=3e-44  Score=313.87  Aligned_cols=159  Identities=34%  Similarity=0.526  Sum_probs=135.9

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccC-----Cccc
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGG-----DITN   83 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G-----~~~~   83 (414)
                      .+.+|.|+++     .|+|+|+||++.||+||+||++||+.+          ||+|+.||||+|+||||||     ||. 
T Consensus         5 ~~~~v~l~T~-----~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Ydg~~FhRvi~~f~iQgG~~~~~Dp~-   68 (201)
T 3bo7_A            5 KKGYLRIVTT-----QGSLNIELHADMAPRACDSFLRLCAVK----------YFDDTIFHRCIRNFMIQGGRAELRQPS-   68 (201)
T ss_dssp             CCEEEEEEET-----TEEEEEEECTTTCHHHHHHHHHHHHTT----------TTTTCBEEEEETTTEEEECCGGGCCC--
T ss_pred             CceEEEEEeC-----CCCEEEEEcCCCCcHHHHHHHHHHhcC----------ccCCCEEEEeeCCCEEEcCcccccCCC-
Confidence            3567777655     499999999999999999999999654          5999999999999999999     876 


Q ss_pred             cCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCcccccc-------CCcCCCC-cccccccccce
Q psy793           84 FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIY-------GPCFEDE-NFKLKHKFEGQ  155 (414)
Q Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~-------g~~~~~e-~~~~~~~~~g~  155 (414)
                      +++.                                            ++.++|       |..|++| ...++|+.+|+
T Consensus        69 ~~g~--------------------------------------------gg~si~~~~~~~~g~~f~dE~~~~l~h~~~G~  104 (201)
T 3bo7_A           69 KKKE--------------------------------------------VQQSPRSISGFPGGAPFEDEFDNRLVHQGIGV  104 (201)
T ss_dssp             --------------------------------------------------CCSSCCCSSTTCCCBCCCCCTTCCCCSTTE
T ss_pred             CCCC--------------------------------------------CCccccccccccCCCcccCcccCCCCcCCCcE
Confidence            4453                                            444555       7788888 47889989999


Q ss_pred             eeeccCCCCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccC-CCCccccEEEEcCCCCCCCCC
Q psy793          156 LSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSLNED  228 (414)
Q Consensus       156 l~~~~~~~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-~~~P~~~i~I~~~g~l~~~~~  228 (414)
                      ||||+++ |++++||||||++++|+||++|+|||+|++||+||++|+.+++. .++|..+|+|.+|+++..+++
T Consensus       105 lsmA~~g-p~s~gSQFFIt~~~~~~LDg~~tVFG~Vv~Gmdvv~~I~~~~t~~~~~P~~~i~I~~~~v~~dPf~  177 (201)
T 3bo7_A          105 LSMANDG-KHSNLSEFFITFKSCEHLNNKHTIFGRVVGGLDVLRQWEKLETDKKDKPLKPPKVEEIIVFKNPFE  177 (201)
T ss_dssp             EEECCSS-TTCBSSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHTTCCBCTTSCBSSCCBEEEEEEEECCC-
T ss_pred             EEEeeCC-CCCcccEEEEECCCCcccCCCceEEEEEecCHHHHHHHHhCCcCCCCCcCCCeEEEEEEEEcCCcc
Confidence            9999998 99999999999999999999999999999999999999999984 589999999999999876544

>1v9t_A Cyclophilin B; beta barrel, isomerase-isomerase inhibitor complex; HET: NIT; 1.70A {Escherichia coli} SCOP: b.62.1.1 PDB: 1j2a_A* 1vai_A* 1clh_A

Probab=100.00  E-value=1.1e-43  Score=301.86  Aligned_cols=154  Identities=31%  Similarity=0.472  Sum_probs=133.2

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      .++++|+|+++.     |+|+||||++.||+||+||++||+.          +||+|+.||||+|+|||||||+....+ 
T Consensus         2 ~~~~~v~~~t~~-----G~i~ieL~~~~aP~t~~NF~~L~~~----------g~Y~g~~FhRvi~~f~iQgGd~~~~~~-   65 (166)
T 1v9t_A            2 KGDPHVLLTTSA-----GNIELELDKQKAPVSVQNFVDYVNS----------GFYNNTTFHRVIPGFMIQGGGFTEQMQ-   65 (166)
T ss_dssp             CCSCEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHHT----------TTTTTCBEEEEETTTEEEESSBCTTCC-
T ss_pred             CCCeEEEEEeCC-----ccEEEEEcCCCCcHHHHHHHHHhcc----------CCCCCCEEEEEECCcEEEcCCcCcCCC-
Confidence            568999998654     9999999999999999999999954          459999999999999999999864211 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                    .+.++..+++|.....|+.+|+|||||++.|+++
T Consensus        66 ----------------------------------------------~~~~g~~~~dE~~~~l~~~~G~lsmA~~~~p~t~   99 (166)
T 1v9t_A           66 ----------------------------------------------QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSA   99 (166)
T ss_dssp             ----------------------------------------------BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCB
T ss_pred             ----------------------------------------------CCCCCCcccccccccccCCceEEEEeecCCCCCc
Confidence                                                          1234667888876555668999999998559999


Q ss_pred             cchhhhhcCCCCCCCCc-----ceeeEEEEechHHHHHHhccccCC-----CCccccEEEEcCCCC
Q psy793          168 NSQFFITLAPCPHLDGK-----NVVFGCVRQGFGVAREVSYVEAEN-----DKPLVTCTITNSGQL  223 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~-----~~vfG~V~~G~~vv~~i~~~~~~~-----~~P~~~i~I~~~g~l  223 (414)
                      +||||||++++|+||++     |+|||+|++||+||++|+.+++..     ++|..+|+|.+|.++
T Consensus       100 gSQFfI~~~~~~~Ld~~~~~~~~tvFG~Vv~G~dvv~~I~~~~~~~~~~~~~~P~~~v~I~~~~v~  165 (166)
T 1v9t_A          100 TSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             CSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEEEEEC
T ss_pred             cceEEEEeCCccccCCccCcCCeeEEEEEecCHHHHHHHHhCCCCCCCccCCCcCCCeEEEEEEEe
Confidence            99999999999999998     999999999999999999999843     789999999998764

>2hq6_A Serologically defined colon cancer antigen 10; protein folding, peptidyl-prolyl CIS-trans isomerase, struct genomics; 1.75A {Homo sapiens}

Probab=100.00  E-value=1.9e-43  Score=303.68  Aligned_cols=159  Identities=36%  Similarity=0.596  Sum_probs=140.6

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      ...+++|+|+++.     |+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+. +++
T Consensus        21 ~~~~~~V~l~T~~-----G~I~ieL~~~~aP~tv~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~-~~g   84 (185)
T 2hq6_A           21 PPTNGKVLLKTTA-----GDIDIELWSKEAPKACRNFIQLCLEA----------YYDNTIFHRVVPGFIVQGGDPT-GTG   84 (185)
T ss_dssp             CCCBCEEEEEETT-----EEEEEEEBTTTCHHHHHHHHHHHHTT----------TTTTEECCEEETTTEEEECCTT-SSS
T ss_pred             CCCCCEEEEEeCC-----ccEEEEEeCCCCcHHHHHHHHHhhcC----------ccCCCEEEEEECCCEEEcCCCC-CCC
Confidence            3457789998865     99999999999999999999999654          4999999999999999999985 334


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~  165 (414)
                                                                  .++.++||..+++|.. .++|+.+|+|+|||.+ |+
T Consensus        85 --------------------------------------------~gg~si~g~~~~dE~~~~l~h~~~G~lsMA~~g-~~  119 (185)
T 2hq6_A           85 --------------------------------------------SGGESIYGAPFKDEFHSRLRFNRRGLVAMANAG-SH  119 (185)
T ss_dssp             --------------------------------------------SCCCCTTSSCBCCCCBTTBCSCSSSEEEECCSS-TT
T ss_pred             --------------------------------------------CCCCcccCCccccccccCcccCCCeEEEEccCC-CC
Confidence                                                        5667888889999975 6888899999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHH--HHHhcccc-CCCCccccEEEEcCCCCCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVA--REVSYVEA-ENDKPLVTCTITNSGQLSLNE  227 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv--~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~  227 (414)
                      +++||||||++++|+||++|+|||+|+ |++++  ++|+.+++ .+++|..+|+|.+|+++..++
T Consensus       120 s~gSQFFIt~~~~~~LDg~~tVFG~V~-G~~v~~~~~i~~~~~~~~~~P~~~v~I~~~~v~~~Pf  183 (185)
T 2hq6_A          120 DNGSQFFFTLGRADELNNKHTIFGKVT-GDTVYNMLRLSEVDIDDDERPHNPHKIKSCEVLFNPF  183 (185)
T ss_dssp             CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHTTCSCBCTTSCBSSCCEEEEEEEEECTT
T ss_pred             CccceEEEECCCCCccCCCceEEEEEE-eCeeehhhHHhhCCcCCCCCCCCCeEEEEEEEeCCCC
Confidence            999999999999999999999999999 88875  67888887 578999999999999987554

>3bkp_A Cyclophilin; malaria, isomerase, structural GENO structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=100.00  E-value=2.4e-42  Score=306.65  Aligned_cols=162  Identities=31%  Similarity=0.513  Sum_probs=140.0

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      ...++.|+|+++.     |+|+||||++.||+||+||++||+++          ||+|+.||||+|+|||||||+. +++
T Consensus        18 p~~~~~V~l~T~~-----G~I~ieL~~d~aP~tv~NF~~L~~~g----------~Ydgt~FhRVi~~FmiQgGdp~-~~G   81 (232)
T 3bkp_A           18 GSTRGKVVLHTSL-----GDLDVELWARECPLACRNFVQLCLEG----------YYVNTIFHRVVKDFIVQGGDPT-GTG   81 (232)
T ss_dssp             CSCBCEEEEEETT-----EEEEEEEBTTTCHHHHHHHHHHHHHT----------TTTTCBEEEEETTTEEEECCTT-SSS
T ss_pred             CCCCCEEEEEECC-----CcEEEEEcCCCCcHHHHHHHHHhhcC----------ccCCCEEEEEeCCCEEEcCCCC-CCC
Confidence            3456789998765     99999999999999999999999655          4999999999999999999986 344


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCcccccc--CCcCCCCcc-cccccccceeeeccCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIY--GPCFEDENF-KLKHKFEGQLSLANTGH  163 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~--g~~~~~e~~-~~~~~~~g~l~~~~~~~  163 (414)
                                                                  +++.++|  |..|++|.. .++|+.+|+|+||+.+.
T Consensus        82 --------------------------------------------~Gg~si~~~g~~f~dE~~~~l~h~~~G~lsMA~~g~  117 (232)
T 3bkp_A           82 --------------------------------------------RGGADTTFDGKPFDVETHPRLKFRYRGLVGVANLGR  117 (232)
T ss_dssp             --------------------------------------------SCCCCCTTTTCCBCCCCCTTCCCCSTTEEEECCCC-
T ss_pred             --------------------------------------------CCCCccccCCCccCCccccCcCcCCCeEEEEeccCC
Confidence                                                        5566777  888999974 78898999999999994


Q ss_pred             C-------------CCccchhhhhcCCCCCCCCcceeeEEEEechHH--HHHHhcccc-CCCCccccEEEEcCCCCCCCC
Q psy793          164 P-------------NTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGV--AREVSYVEA-ENDKPLVTCTITNSGQLSLNE  227 (414)
Q Consensus       164 ~-------------~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~v--v~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~  227 (414)
                      +             ++++||||||++++|+||++|||||+|+ |+++  +++|+.+++ .+++|..+|+|.+|+++..++
T Consensus       118 ~~~~~~n~e~g~~~~sngSQFFIt~~~~p~LDg~~tVFG~Vv-g~~v~~v~kI~~~~t~~~~~P~~~i~I~~~~vl~dPf  196 (232)
T 3bkp_A          118 SSKDAENDERGRSLGTNGNQFFITLARADVLNNAYTLFGKVT-GHTLYNLMKFNDLEVGKEDRPMTPPFIKSVDVLWNPF  196 (232)
T ss_dssp             ---------------CBCSCEEEESSCCGGGTTTSCEEEEEC-GGGHHHHHHHTTSCBCGGGCBSSCCBEEEEEEEECCC
T ss_pred             cccccccccccccCCCcCCEEEEECCCCcccCCCccEEEEEE-eCchHHHHHHHcCCcCCCCCcCCCeEEEEEEEEcCCh
Confidence            3             7999999999999999999999999999 7766  889999988 578999999999999987665


Q ss_pred             Cc
Q psy793          228 DW  229 (414)
Q Consensus       228 ~~  229 (414)
                      +.
T Consensus       197 ~d  198 (232)
T 3bkp_A          197 ED  198 (232)
T ss_dssp             TT
T ss_pred             hh
Confidence            44

>1lop_A Cyclophilin A; rotamase, isomerase-isomerase inhibitor complex; HET: NIT; 1.80A {Escherichia coli} SCOP: b.62.1.1 PDB: 2nul_A 2rs4_A

Probab=100.00  E-value=1.3e-42  Score=294.60  Aligned_cols=145  Identities=28%  Similarity=0.420  Sum_probs=127.4

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+..+                
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~~~----------------   58 (164)
T 1lop_A            5 HTNHGDIVIKTFDDKAPETVKNFLDYCREG----------FYNNTIFHRVINGFMIQGGGFEPG----------------   58 (164)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTT----------TTTTEECCEEETTTEEEESSEETT----------------
T ss_pred             EeCCCCEEEEEeCCCCcHHHHHHHHHHhcC----------CCCCCEEEEEeCCceEecCCcccC----------------
Confidence            456699999999999999999999999654          599999999999999999998632                


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCccc-ccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFK-LKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~-~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                     .+.++||..+++|... ++| .+|+|||||++.|++++||||||++++|
T Consensus        59 -------------------------------~g~~~~g~~~~dE~~~~l~~-~~G~lsmA~~~~p~s~gSQFfI~~~~~~  106 (164)
T 1lop_A           59 -------------------------------MKQKATKEPIKNEANNGLKN-TRGTLAMARTQAPHSATAQFFINVVDND  106 (164)
T ss_dssp             -------------------------------TEECCCCCCBCCCCCSSCCC-CTTEEEECCCSSTTCBCSCEEEESSCCG
T ss_pred             -------------------------------CCcCCCCCcccccccccccc-CccEEEEeecCCCCCccceEEEEcCCcc
Confidence                                           1335667889999754 555 7999999986459999999999999999


Q ss_pred             CCCCc--------ceeeEEEEechHHHHHHhccccC-----CCCccccEEEEcCCCC
Q psy793          180 HLDGK--------NVVFGCVRQGFGVAREVSYVEAE-----NDKPLVTCTITNSGQL  223 (414)
Q Consensus       180 ~ld~~--------~~vfG~V~~G~~vv~~i~~~~~~-----~~~P~~~i~I~~~g~l  223 (414)
                      +||++        |+|||+|++||+||++|+.+++.     .++|..+|+|.+|+++
T Consensus       107 ~Ld~~~~~~~~~~~tvFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~~~v~  163 (164)
T 1lop_A          107 FLNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVTVS  163 (164)
T ss_dssp             GGSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEEEEEC
T ss_pred             ccCCccccccCCceEEEEEEecCHHHHHHHHhCCcCCccccCCCcCCCeEEEEEEEe
Confidence            99998        99999999999999999999985     3799999999998765

>3s6m_A Peptidyl-prolyl CIS-trans isomerase; seattle structural genomics center for infectious disease; 1.65A {Burkholderia pseudomallei} SCOP: b.62.1.1 PDB: 3t1u_A*

Probab=100.00  E-value=3e-42  Score=293.87  Aligned_cols=152  Identities=27%  Similarity=0.367  Sum_probs=129.4

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .++.|.|+++.     |+|+||||++.||+||+||++||+.+          ||+|+.||||+|+|||||||+....   
T Consensus         2 p~~~v~l~T~~-----G~i~ieL~~~~aP~t~~NF~~L~~~g----------~Y~g~~FhRvi~~f~iQgGd~~~~~---   63 (167)
T 3s6m_A            2 PGSMVELHTNH-----GVIKLELDEAKAPKTVENFLNYVKKG----------HYDGTIFHRVINGFMIQGGGFEPGL---   63 (167)
T ss_dssp             CCCEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHHHT----------TTTTEECCEEETTTEEEESSEETTT---
T ss_pred             CCcEEEEEeCC-----ceEEEEEeCCCCcHHHHHHHHHhhhc----------ccCCCEeEEecCCcEEEeccccCCC---
Confidence            46788886554     99999999999999999999999655          4999999999999999999986421   


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                  +.+.++..+++|.....++.+|+|||||.+.|++++
T Consensus        64 --------------------------------------------~~~~~~~~~~~E~~~~l~~~~G~lsmA~~~~p~t~g   99 (167)
T 3s6m_A           64 --------------------------------------------KQKPTDAPIANEANNGLKNDTYTIAMARTNDPHSAT   99 (167)
T ss_dssp             --------------------------------------------EECCCCCCBCCCGGGCCCCCTTEEEECCCSSTTCBC
T ss_pred             --------------------------------------------CCCCCCCccCCcccccccCCccEEEEecCCCCCCcc
Confidence                                                        123446667777543334489999999964499999


Q ss_pred             chhhhhcCCCCCCCCc--------ceeeEEEEechHHHHHHhccccC-----CCCccccEEEEcCCC
Q psy793          169 SQFFITLAPCPHLDGK--------NVVFGCVRQGFGVAREVSYVEAE-----NDKPLVTCTITNSGQ  222 (414)
Q Consensus       169 sqf~it~~~~p~ld~~--------~~vfG~V~~G~~vv~~i~~~~~~-----~~~P~~~i~I~~~g~  222 (414)
                      ||||||++++|+||++        |+|||+|++||+||++|+++++.     +++|..+|+|.++.+
T Consensus       100 SQFfI~~~~~~~Ld~~~~~~~~~~~~VFG~Vv~G~dvv~~I~~~~t~~~~~~~~~P~~~v~I~~~~i  166 (167)
T 3s6m_A          100 AQFFINVNDNEFLNHSSPTPQGWGYAVFGKVVEGQDIVDKIKAVKTGSKGFHQDVPNDDVVIEKAVV  166 (167)
T ss_dssp             SCEEEESSCCGGGSCCSSSTTTCCCCEEEEEEECHHHHHHHTTSCBBC---CBTCBSSCCEEEEEEE
T ss_pred             ceEEEEcCCchhcCCcccccCCCCceEEEEEEcCHHHHHHHHcCCcCCCcccCCCcCCCeEEEEEEE
Confidence            9999999999999998        99999999999999999999984     479999999998754

>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}

Probab=100.00  E-value=9.6e-38  Score=292.50  Aligned_cols=177  Identities=20%  Similarity=0.252  Sum_probs=138.2

Q ss_pred             cccccCCCcEEEEEEeeCC---eeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccC
Q psy793            3 KSICKEGNYIVFLDVSIGE---EKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGG   79 (414)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~---~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G   79 (414)
                      ..++..++++|.|++.+.+   ++.|+|+|+||++.||+||+||++||+.          +||+|+.|||| ++||||||
T Consensus       163 ~~P~l~gra~V~m~t~~~~~~~~~~G~I~IeL~~d~AP~Tv~NFl~L~~~----------GfYdGt~FHRV-~gFmIQgG  231 (369)
T 3rfy_A          163 NMPLLKGRASVDMKVKIKDNPNIEDCVFRIVLDGYNAPVTAGNFVDLVER----------HFYDGMEIQRS-DGFVVQTG  231 (369)
T ss_dssp             TSCEECSEEEEEEEEECCSCSSCSEEEEEEEEETTTCHHHHHHHHHHHHT----------TTTTTEECEEE-EEEEECCC
T ss_pred             cCccCCCCeEEEEEEeccCCCcccceEEEEEEeCCCCcHHHHHHHHHhhc----------CCcCCCeeeee-CCeeEecC
Confidence            3456678999999999754   3689999999999999999999999964          45999999999 99999999


Q ss_pred             CccccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-----cccccccc
Q psy793           80 DITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-----KLKHKFEG  154 (414)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-----~~~~~~~g  154 (414)
                      |+.. +++++....  ....+.++.|+...                     ..+.++|+..+++|.+     .++|+++|
T Consensus       232 Dp~g-~G~G~~~~~--~g~~~~iP~E~~~~---------------------G~g~piyg~~fedegf~~~~~~L~h~~~G  287 (369)
T 3rfy_A          232 DPEG-PAEGFIDPS--TEKTRTVPLEIMVT---------------------GEKTPFYGSTLEELGLYKAQVVIPFNAFG  287 (369)
T ss_dssp             CCCC-CCSCCCSCC--CCCCCSSSSSSCSS---------------------SSCCSCCCSSTGGGTEEEEEEEECCCCCC
T ss_pred             CCCC-CCCCccCcc--cCcCcccCcccccc---------------------CCCCCcCCCccccccccccccccccCCCc
Confidence            9973 443322110  01112223332100                     1245789998988754     78899999


Q ss_pred             eeeeccC-CCCCCccchhhhhc-------CCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEc
Q psy793          155 QLSLANT-GHPNTNNSQFFITL-------APCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITN  219 (414)
Q Consensus       155 ~l~~~~~-~~~~~~~sqf~it~-------~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~  219 (414)
                      +|+|||+ ..|+|++||||||+       +++|||||+|||||+|++||+||++|++     +..+..++|..
T Consensus       288 ~LsMAns~~gPnSngSQFFItl~d~~L~~~~~~~LDgkytVFG~VveGmdVVdkI~~-----GD~I~sv~I~~  355 (369)
T 3rfy_A          288 TMAMAREEFENDSGSSQVFWLLKESELTPSNSNILDGRYAVFGYVTDNEDFLADLKV-----GDVIESIQVVS  355 (369)
T ss_dssp             CCCCSSCCCCCCCSSCCCCCCCEEEEECSCCCSSSCSCEEEEEEEEESTTGGGGCCT-----TCEEEEEEEEE
T ss_pred             eEEEeecCCCCCCccceEEEEecccccCCCCCcccCCCeeEEEEEecCHHHHHHHhC-----CCceEEEEEec
Confidence            9999998 24999999999999       4789999999999999999999999988     55667777765

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.89  E-value=7.9e-23  Score=173.95  Aligned_cols=156  Identities=20%  Similarity=0.306  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhcc--CCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ--SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI  334 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  334 (414)
                      .++..+.+..+++.|+.+++.|+|++|+..|.+|+.+++....  ....++.....+....+|.|+|.||+++++|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            3456678999999999999999999999999999999765432  22334455667888999999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy793          335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLNLEKMTYARMFQN  412 (414)
Q Consensus       335 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  412 (414)
                      .+|+++|+++|+++++|+++|.++..+|++++|+.+|+++++++|++. .+...+..+...+++..+++|+.|++||++
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  162 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQP  162 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC--------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999 889999999999999999999999999974

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.85  E-value=7.1e-21  Score=155.30  Aligned_cols=115  Identities=26%  Similarity=0.439  Sum_probs=110.7

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.+..++++|+.++++|+|++|+..|++||++                +|....+|.++|.||.++|++++|+.+|+++|
T Consensus        11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----------------DPENAILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            45788999999999999999999999999999                88889999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      +++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.|+
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999998764

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.85  E-value=7e-21  Score=159.48  Aligned_cols=141  Identities=6%  Similarity=0.073  Sum_probs=123.0

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      |-+....+..+++.|+.+++.|+|++|+..|++||++.+......    .....|....+|.|+|.|+.++|+|++|+.+
T Consensus         4 ~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~----a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~   79 (159)
T 2hr2_A            4 PLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE----AFDHAGFDAFCHAGLAEALAGLRSFDEALHS   79 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh----hhhhccchHHHHHHHHHHHHHCCCHHHHHHH
Confidence            444566789999999999999999999999999999966532110    1122455677999999999999999999999


Q ss_pred             HHHHHhc-------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          337 CDDILLM-------EPNNVKAL----FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       337 ~~~al~~-------~p~~~~a~----~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      |++||++       +|+++++|    |++|.++..+|++++|+.+|+++++++|++..+...+..+...+.++.++
T Consensus        80 ~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           80 ADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            9999999       99999999    99999999999999999999999999999999999999888887776654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.81  E-value=9.3e-19  Score=174.27  Aligned_cols=157  Identities=30%  Similarity=0.503  Sum_probs=137.1

Q ss_pred             CHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH
Q psy793          256 QLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN  335 (414)
Q Consensus       256 ~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~  335 (414)
                      ..+.....+..++.+|+.++++|+|++|+.+|++|+++.+.... ...+......+....+|+|+|.||+++++|++|+.
T Consensus       260 ~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  338 (457)
T 1kt0_A          260 DTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-LSEKESKASESFLLAAFLNLAMCYLKLREYTKAVE  338 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-CCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-CChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            46667788999999999999999999999999999998665432 23455556678889999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy793          336 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG  413 (414)
Q Consensus       336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~  413 (414)
                      +|++||+++|+++++|+++|.+|..+|+|++|+.+|++|++++|++..++..++.++..+++..++++..|++||++.
T Consensus       339 ~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~  416 (457)
T 1kt0_A          339 CCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF  416 (457)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.80  E-value=2.7e-18  Score=163.99  Aligned_cols=155  Identities=30%  Similarity=0.529  Sum_probs=142.0

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      .+.....+..++.+|+.+++.|+|++|+..|++|+.+.+.... ...+......+....+|.|+|.||+++++|++|+.+
T Consensus       140 ~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~  218 (336)
T 1p5q_A          140 SEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS-FSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIES  218 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC-CCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc-CChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            5566778899999999999999999999999999999654432 233555666788899999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  412 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  412 (414)
                      |+++|+++|+++++|+++|.+|..+|++++|+.+|+++++++|++..++..++.++..+++..+.+++.|++||++
T Consensus       219 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          219 CNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999974

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.79  E-value=4.9e-18  Score=149.08  Aligned_cols=159  Identities=26%  Similarity=0.394  Sum_probs=127.0

Q ss_pred             CCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH
Q psy793          255 VQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI  334 (414)
Q Consensus       255 ~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~  334 (414)
                      ++.++..+.+..++..|+.+++.|+|++|+..|.+|+.+.+....................++.++|.||.++++|++|+
T Consensus        29 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  108 (198)
T 2fbn_A           29 YTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAI  108 (198)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            45777888999999999999999999999999999999754322111110111123344689999999999999999999


Q ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy793          335 NLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQNG  413 (414)
Q Consensus       335 ~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~~  413 (414)
                      .+|+++++++|++..+++++|.++..+|++++|+..|+++++++|++..++..++.++..+++..+.++..++++|+..
T Consensus       109 ~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          109 DHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999853

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.75  E-value=1e-17  Score=136.54  Aligned_cols=115  Identities=22%  Similarity=0.341  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ..+.+..++++|+.++++|+|++|+.+|++||++                +|....+|.|+|.||+++++|++|+.+|++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~   67 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------DPSNITFYNNKAAVYFEEKKFAECVQFCEK   67 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHH
Confidence            4567889999999999999999999999999999                788899999999999999999999999999


Q ss_pred             HHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          340 ILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       340 al~~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      +|+++|++       +++|+++|.++..++++++|+..|+++++..|+ ++....+..+
T Consensus        68 al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           68 AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            99998866       468999999999999999999999999999985 5555555443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=1.7e-17  Score=134.45  Aligned_cols=117  Identities=21%  Similarity=0.303  Sum_probs=111.5

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..++..|+.+++.|+|++|+..|++|+++                .|....+|.++|.||.++++|++|+.+++++++
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAIE   66 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999                788889999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL------PNDQQILKEIAFVRKQM  395 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~------P~~~~~~~~l~~~~~~~  395 (414)
                      ++|+++.+|+++|.++..+|++++|+..|+++++++      |++..++..+..+..++
T Consensus        67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999      99999999998887653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.75  E-value=3.3e-18  Score=163.51  Aligned_cols=160  Identities=26%  Similarity=0.395  Sum_probs=103.3

Q ss_pred             ccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-CcHHHHHhhHHHHHHHHHHHHHHHHHhhCHH
Q psy793          253 ETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-QSKTQQKHFRSYYTAALLNMAAVQLKFKAYK  331 (414)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  331 (414)
                      ..++.++..+.+..++..|+.+++.++|++|+.+|.+|+.+.+..... ...............+|+|+|.||+++++|+
T Consensus       168 ~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~  247 (338)
T 2if4_A          168 SDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYD  247 (338)
T ss_dssp             TBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCH
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence            345578888999999999999999999999999999999984322100 0001111112233469999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy793          332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  411 (414)
Q Consensus       332 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  411 (414)
                      +|+.+|+++|+++|++.++|+++|.+|..+|++++|+.+|+++++++|++..++..+..+........+++++.|++||+
T Consensus       248 ~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          248 EAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            99999999999999999999999999999999999999999999999999999999999988888999999999999997


Q ss_pred             C
Q psy793          412 N  412 (414)
Q Consensus       412 ~  412 (414)
                      .
T Consensus       328 ~  328 (338)
T 2if4_A          328 G  328 (338)
T ss_dssp             -
T ss_pred             C
Confidence            4

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.71  E-value=1.9e-16  Score=133.08  Aligned_cols=104  Identities=13%  Similarity=0.296  Sum_probs=100.4

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..+++.|+|++|+..|++++.+                +|....+|.++|.||.++|+|++|+.+|+++++
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFA   98 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            3677999999999999999999999999999                888999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      ++|+++.+|+++|.||..+|++++|+..|++++++.|+.+
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999999999999875

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.71  E-value=1.5e-16  Score=135.14  Aligned_cols=123  Identities=17%  Similarity=0.208  Sum_probs=111.4

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|+.+++.|+|++|+..|++++++                .|....+|.++|.||+++++|++|+.++++++
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   72 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI----------------APANPIYLSNRAAAYSASGQHEKAAEDAELAT   72 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999                77888999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH--HHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ--ILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~--~~~~l~~~~~~~~~~~~  400 (414)
                      +++|++..+|+++|.++..+|++++|+..|+++++++|++..  ....+..++.++++..+
T Consensus        73 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~  133 (164)
T 3sz7_A           73 VVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEANR  133 (164)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999977  55555555555555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.68  E-value=1e-16  Score=134.58  Aligned_cols=115  Identities=9%  Similarity=0.017  Sum_probs=99.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+...|+.|++.|+|++|+.+|++|+++                +|....+|.++|.||.+++++++|+.++++++++
T Consensus        31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~   94 (150)
T 4ga2_A           31 SIKGFYFAKLYYEAKEYDLAKKYICTYINV----------------QERDPKAHRFLGLLYELEENTDKAVECYRRSVEL   94 (150)
T ss_dssp             HTTHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            445677899999999999999999999998                7888889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQD-YEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~-~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      +|+++.+|+++|.++..+|++++|+.. +++|++++|+++.+...++.+...
T Consensus        95 ~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~  146 (150)
T 4ga2_A           95 NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDC  146 (150)
T ss_dssp             CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            999999999999999999998877765 589999999999888877777654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.68  E-value=6e-16  Score=128.30  Aligned_cols=122  Identities=13%  Similarity=0.183  Sum_probs=111.5

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..+++.|+|++|+..|++++..                .|....+|.++|.||.++++|++|+.++++++.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML----------------DHYDARYFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3567889999999999999999999999999                888899999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++|+++........+...+....+
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  138 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA  138 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988777776666666555443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.67  E-value=5.3e-16  Score=129.89  Aligned_cols=119  Identities=12%  Similarity=0.154  Sum_probs=108.1

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|++|+..|++++.+                .|....+|+++|.|+..+|+|++|+.+|++++.
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL----------------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc----------------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            4667889999999999999999999999999                888899999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      ++|+++.+++++|.++..+|++++|+..|+++++++|+++........+...+..
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~  138 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEA  138 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999887665555555544443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.67  E-value=1.5e-16  Score=133.60  Aligned_cols=118  Identities=13%  Similarity=0.048  Sum_probs=107.7

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  349 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~  349 (414)
                      +|..+..+|++++|+..|++++..                .|.....++++|.+|+++|+|++|+.+++++|+++|+++.
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~----------------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~   66 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPS----------------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK   66 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCS----------------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhccc----------------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            688899999999999999999988                8888899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +|+.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+..+
T Consensus        67 a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~  120 (150)
T 4ga2_A           67 AHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAK  120 (150)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHH
T ss_pred             HHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHH
Confidence            999999999999999999999999999999999999999999988877654433

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.66  E-value=5.5e-16  Score=126.78  Aligned_cols=122  Identities=20%  Similarity=0.347  Sum_probs=113.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.|+|++|+..|.+++.+                .|....++.++|.|+..+++|++|+.++++++++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~   72 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   72 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh----------------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            677899999999999999999999999999                7777899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN-----DQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-----~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+     +..+...+..+........++
T Consensus        73 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e~  135 (137)
T 3q49_B           73 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIEE  135 (137)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred             CchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998     788888888887766655544

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.66  E-value=4.2e-15  Score=131.61  Aligned_cols=119  Identities=16%  Similarity=0.150  Sum_probs=111.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHH----------------HHHHHHHh
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN----------------MAAVQLKF  327 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~n----------------la~~~~~l  327 (414)
                      +..+..+|..++..|+|++|+..|++++++                +|....+|++                +|.+|.++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~   67 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL----------------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN   67 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC
Confidence            566888999999999999999999999999                7888888888                99999999


Q ss_pred             hCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       328 ~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      |++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++.
T Consensus        68 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           68 RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998666543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.62  E-value=2.9e-15  Score=156.43  Aligned_cols=124  Identities=19%  Similarity=0.230  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.+..+.++|+.+.++|++++|+.+|++||++                +|....+|+|+|.+|.++|++++|+.+|++||
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l----------------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al   70 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEV----------------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAI   70 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34778889999999999999999999999988                55566666666666666666666666666666


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +++|+++.+|+++|.++..+|++++|++.|++|++++|++..++.+++.++..+++..+.
T Consensus        71 ~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            666666666666666666666666666666666666666666666666666666555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.61  E-value=1.2e-14  Score=114.57  Aligned_cols=115  Identities=21%  Similarity=0.289  Sum_probs=108.4

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|++|+..|++++..                .|....++.++|.++..++++++|+..++++++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~   66 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL----------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD   66 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            4677899999999999999999999999998                666788999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.+..
T Consensus        67 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           67 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999999999999999999999999999988887753

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.60  E-value=4.1e-14  Score=119.02  Aligned_cols=127  Identities=17%  Similarity=0.303  Sum_probs=114.5

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      .....+.+..+...|..++..|+|++|+..|.+++..                .|....++.++|.++..+++|++|+.+
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~   69 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------NPSNAIYYGNRSLAYLRTECYGYALGD   69 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHcCCHHHHHHH
Confidence            3456678999999999999999999999999999998                677788999999999999999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH--HHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV--RKQMRHHL  399 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~--~~~~~~~~  399 (414)
                      ++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..+..+  ....++..
T Consensus        70 ~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~  134 (166)
T 1a17_A           70 ATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFE  134 (166)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988666666  43334433

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.60  E-value=2.2e-14  Score=115.17  Aligned_cols=122  Identities=25%  Similarity=0.362  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ....+..+...|..++..++|++|+..|.+++..                .|....++.++|.++..++++++|+.++++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~   71 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----------------NPANAVYFCNRAAAYSKLGNYAGAVQDCER   71 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhhchHHHHHHHHH
Confidence            4456788999999999999999999999999998                666678999999999999999999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      ++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999999998877654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=4.8e-14  Score=116.23  Aligned_cols=116  Identities=22%  Similarity=0.349  Sum_probs=105.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|++++++.+.             .+....++.++|.+|..+++|++|+.++++++++
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-------------PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-------------chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            667899999999999999999999999987110             1234789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++..++..+..+.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998887764

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=6.7e-15  Score=118.66  Aligned_cols=101  Identities=14%  Similarity=0.129  Sum_probs=91.7

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      +...|..+++.|++++|+..|++|++.                .|....+|+++|.++..+|++++|+..++++++++|+
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK----------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            677899999999999999999999999                8888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      +..+++.+|.++..+|++++|+..|+++++++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999998754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.58  E-value=8e-15  Score=118.51  Aligned_cols=116  Identities=22%  Similarity=0.348  Sum_probs=109.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|+++++.                .|....++.++|.++..++++++|+.++++++++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR----------------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            677999999999999999999999999988                6667889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999998887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.58  E-value=7.8e-15  Score=130.74  Aligned_cols=118  Identities=15%  Similarity=0.153  Sum_probs=69.2

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh-----------hCHHHHHH
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-----------KAYKRAIN  335 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-----------~~~~~A~~  335 (414)
                      +...|..+++.|++++|+..|++++++                +|....++.++|.++.++           |++++|+.
T Consensus        42 ~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~  105 (217)
T 2pl2_A           42 LYWLARTQLKLGLVNPALENGKTLVAR----------------TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALS  105 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHH
Confidence            334444444444444444444444444                555556666666666666           66666666


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          336 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .++++++++|+++.+++.+|.++..+|++++|+..|+++++++ ++..++..++.++...++..+.
T Consensus       106 ~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A  170 (217)
T 2pl2_A          106 VLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEA  170 (217)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHH
Confidence            6666666666666666666666666666666666666666666 5666666666666655555444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=1.2e-14  Score=151.77  Aligned_cols=122  Identities=16%  Similarity=0.214  Sum_probs=115.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+.++|+.|.+.|++++|+..|++||++                +|....+|+|+|.+|.++|++++|+.+|++||++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l----------------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l  106 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRI----------------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQI  106 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566889999999999999999999999999                8889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +|+++.+|+++|.+|..+|++++|++.|++|++++|++..++.+++.++..+++..+.
T Consensus       107 ~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          107 NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            9999999999999999999999999999999999999999999999999887765544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.57  E-value=3.4e-14  Score=114.20  Aligned_cols=119  Identities=21%  Similarity=0.320  Sum_probs=109.7

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|++|+..|.+++..                .|....++.++|.++..+++|++|+.++++++.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~   66 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL----------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIE   66 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            4677899999999999999999999999998                566778999999999999999999999999999


Q ss_pred             cCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       343 ~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      +.|.+       ..+++++|.++..+|++++|+..|++++++.| +..+...+..+...+++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            98877       89999999999999999999999999999999 688888888887776654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.56  E-value=2.1e-14  Score=119.89  Aligned_cols=111  Identities=21%  Similarity=0.343  Sum_probs=99.0

Q ss_pred             hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH----------HHHHHHHHHHHhcC
Q psy793          275 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY----------KRAINLCDDILLME  344 (414)
Q Consensus       275 ~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~----------~~A~~~~~~al~~~  344 (414)
                      -+.+.|++|+..|++|+++                .|....+|.|+|.++..++++          ++|+..|++||+++
T Consensus        13 ~r~~~feeA~~~~~~Ai~l----------------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld   76 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS----------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID   76 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhHHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC
Confidence            3557899999999999999                899999999999999999875          59999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMN-----------NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg-----------~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      |++..+|+++|.+|..+|           ++++|+.+|++|++++|++...+..+..+...-.-..+.
T Consensus        77 P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~~~~  144 (158)
T 1zu2_A           77 PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  144 (158)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHhccCcc
Confidence            999999999999999885           899999999999999999999888887776554444333

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.55  E-value=5.6e-14  Score=125.51  Aligned_cols=122  Identities=17%  Similarity=0.182  Sum_probs=108.9

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHH-HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS-YYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ..+...|..++..|+|++|+..|++++++                .| ....+++++|.|+..+++|++|+.++++++++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~   71 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL----------------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK   71 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhc----------------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh
Confidence            56899999999999999999999999998                44 55678889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-------QILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-------~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++.       .++..++.+....++..+..
T Consensus        72 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  137 (228)
T 4i17_A           72 NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAE  137 (228)
T ss_dssp             TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence            999999999999999999999999999999999999999       44666666666655554443

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.54  E-value=8.5e-14  Score=123.95  Aligned_cols=98  Identities=15%  Similarity=0.147  Sum_probs=85.5

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          304 TQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       304 ~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      .......|....++.++|.++..+|++++|+..++++++++ +++.+++.+|.++..+|++++|+..|+++++++|++..
T Consensus       108 ~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  186 (217)
T 2pl2_A          108 KDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD  186 (217)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH
Confidence            45556678888999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy793          384 ILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       384 ~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++..++.++...++..+..
T Consensus       187 ~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          187 LRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             HHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHccCHHHHH
Confidence            9999999998888876653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.54  E-value=8.9e-14  Score=119.74  Aligned_cols=141  Identities=13%  Similarity=0.151  Sum_probs=106.1

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQ  324 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~  324 (414)
                      .+..+.++|+.++++|+|++|+..|++|+++-+.....           ..       ........+....++.++|.++
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~   83 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSAN   83 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence            36678999999999999999999999999983221110           00       1111222233445666666666


Q ss_pred             HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ...++++.|+..+.+++.++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..+..+
T Consensus        84 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~  162 (184)
T 3vtx_A           84 FMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK  162 (184)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH
Confidence            6666677777777777777888888999999999999999999999999999999999999999999988887766544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.54  E-value=4.9e-14  Score=113.77  Aligned_cols=115  Identities=15%  Similarity=0.141  Sum_probs=101.7

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..++..|+|++|+..|++++...+.             .+....+++++|.++.++|+|++|+..+++++..+|
T Consensus         4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-------------GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            4678899999999999999999999987221             122337899999999999999999999999999999


Q ss_pred             CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          346 NN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       346 ~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ++   +.+++.+|.++..+|++++|+..|+++++..|++..+...+..+..
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            99   8899999999999999999999999999999999888776666544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.52  E-value=3.6e-14  Score=137.52  Aligned_cols=120  Identities=10%  Similarity=0.054  Sum_probs=74.5

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-YKRAINLCDDIL  341 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~~~~~al  341 (414)
                      .+..+...|..+.+.|++++|+..|++||.+                +|....+|+++|.++..+++ +++|+.+++++|
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l----------------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al  159 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL----------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAII  159 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh----------------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHH
Confidence            3556777777777777777777777777777                55555555555555555554 555555555555


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      +++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+++.
T Consensus       160 ~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          160 EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence            555555555555555555555555555555555555555555555555555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.51  E-value=3.7e-13  Score=106.90  Aligned_cols=115  Identities=24%  Similarity=0.438  Sum_probs=107.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|++++|+..|.+++..                .|....++.++|.++...+++++|+..+++++..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   72 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            567888999999999999999999999988                5556778999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..
T Consensus        73 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           73 DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999998887654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=8.7e-14  Score=134.86  Aligned_cols=116  Identities=12%  Similarity=0.087  Sum_probs=110.3

Q ss_pred             HHHHHHhhhHHhhhcC-HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          264 IRTIKNSGNEYFKLNR-MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~-~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      +..+..+|..+.+.|+ +++|+..|++||.+                +|....+|+++|.++.++|++++|+.+|+++|+
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----------------~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~  194 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILN  194 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            5668889999999997 99999999999999                888999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      ++|++..+|+++|.++..+|++++|+.+|+++++++|++..++..++.++..+
T Consensus       195 ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l  247 (382)
T 2h6f_A          195 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  247 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998873

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.50  E-value=2.4e-14  Score=120.15  Aligned_cols=94  Identities=13%  Similarity=0.054  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      +|....+++++|.+++++|+|++|+..|++++.++|+++.+|+.+|.++..+|+|++|+..|+++++++|+++.++..++
T Consensus        32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg  111 (151)
T 3gyz_A           32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTG  111 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~~~~~~~~k  403 (414)
                      .++..+++..+..+
T Consensus       112 ~~~~~lg~~~eA~~  125 (151)
T 3gyz_A          112 QCQLRLKAPLKAKE  125 (151)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99999988877654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.50  E-value=9.9e-14  Score=128.77  Aligned_cols=102  Identities=23%  Similarity=0.375  Sum_probs=98.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..++..|+.+++.|+|++|+..|++|+.+                .|....++.++|.+|.++++|++|+.++++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~   67 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            567899999999999999999999999998                7778899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      +|++.++++++|.++..+|++++|+..|+++++++|++
T Consensus        68 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            99999999999999999999999999999999999976

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.49  E-value=8.5e-14  Score=111.12  Aligned_cols=103  Identities=15%  Similarity=0.113  Sum_probs=88.5

Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793          276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  355 (414)
Q Consensus       276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g  355 (414)
                      ..|++++|+..|++|+++-.             .+|....++.++|.+|.++|+|++|+..++++++++|+++.+++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~-------------~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   68 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGL-------------QGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA   68 (117)
T ss_dssp             -----CCCHHHHHHHHSSCC-------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCC-------------CCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            36889999999999998610             03778899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       356 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      .++..+|++++|+..|+++++..|+++.+......+
T Consensus        69 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           69 MVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            999999999999999999999999998876554433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.49  E-value=5.7e-14  Score=140.34  Aligned_cols=115  Identities=19%  Similarity=0.359  Sum_probs=109.3

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.+..+..+|+.++++|+|++|+..|++|+++                .|....+|.++|.+|.++++|++|+.++++|+
T Consensus         4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------NPSNAIYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45667888999999999999999999999999                77788999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                      +++|+++.+++++|.+|..+|++++|++.|+++++++|++..++..++.+.
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998883

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.48  E-value=3.8e-13  Score=120.00  Aligned_cols=118  Identities=15%  Similarity=0.179  Sum_probs=111.3

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+...|..++..|+|++|+..|++|+.+                .|....++.++|.+|..++++++|+..++++++++
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~  106 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKK----------------NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAV  106 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHh----------------CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            35667999999999999999999999998                78889999999999999999999999999999999


Q ss_pred             CCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHH
Q psy793          345 PNNV-------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       345 p~~~-------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~  398 (414)
                      |++.       .+|+.+|.++..+|++++|+..|+++++++|+  +..++..++.++...++.
T Consensus       107 p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          107 PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            9998       77999999999999999999999999999999  999999999998877776

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.47  E-value=7.4e-13  Score=113.92  Aligned_cols=120  Identities=16%  Similarity=0.216  Sum_probs=98.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------C-------cHHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------Q-------SKTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~-------~~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      +..+...|..+++.|++++|+..+.+++...+.....           .       .........|....++..+|.+|.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4557788888889999999999888887653211110           0       022333445667889999999999


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      ++|+|++|+..++++++++|.++.+|+++|.+|..+|++++|+..|++|++++|+++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCHH
Confidence            9999999999999999999999999999999999999999999999999999997643

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.47  E-value=3.7e-13  Score=109.19  Aligned_cols=95  Identities=15%  Similarity=0.143  Sum_probs=90.7

Q ss_pred             hHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHH
Q psy793          309 FRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI  388 (414)
Q Consensus       309 ~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l  388 (414)
                      ++|.....+.++|.+|++.|+|++|+..++++|+++|.++.+|+++|.++..+|++++|+.+|+++++++|++..++..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy793          389 AFVRKQMRHHLNLEK  403 (414)
Q Consensus       389 ~~~~~~~~~~~~~~k  403 (414)
                      +.++..+++..+..+
T Consensus        88 g~~~~~~~~~~~A~~  102 (126)
T 4gco_A           88 AACLVAMREWSKAQR  102 (126)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHCCCHHHHHH
Confidence            999999988877644

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.44  E-value=1.2e-12  Score=115.61  Aligned_cols=107  Identities=18%  Similarity=0.188  Sum_probs=93.3

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN  347 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~  347 (414)
                      ...|..+++.|+|++|+..|++++++                +|....++.++|.+|..+|++++|+.+++++++++|++
T Consensus        58 ~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~  121 (208)
T 3urz_A           58 TELALAYKKNRNYDKAYLFYKELLQK----------------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADN  121 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            34999999999999999999999999                88889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH-----------------------------------cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          348 VKALFRRGRAQVS-----------------------------------MNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       348 ~~a~~~~g~~~~~-----------------------------------lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      +.+|+++|.+|+.                                   +|+|++|+.+|++|++++|+. .+...+..+
T Consensus       122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i  199 (208)
T 3urz_A          122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence            9888888777643                                   356889999999999999974 344445444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.43  E-value=1e-12  Score=115.67  Aligned_cols=122  Identities=16%  Similarity=0.179  Sum_probs=110.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|++|+..|++++..                   ...++.++|.+|.++|+|++|+.+++++++
T Consensus         5 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            5 EAISLWNEGVLAADKKDWKGALDAFSAVQDP-------------------HSRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC-------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC-------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566889999999999999999999998521                   246899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH----------------HHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ----------------QILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~----------------~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++|+++.+++++|.++..+|++++|+..|++++++.|.+.                .++..++.++..+++..+..+
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  142 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  142 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999999999999999999999999999988877                999999999988887766543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.42  E-value=2.2e-12  Score=110.32  Aligned_cols=112  Identities=15%  Similarity=0.214  Sum_probs=102.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHH-HHHhhCH--HHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV-QLKFKAY--KRAINLCDDI  340 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~~l~~~--~~A~~~~~~a  340 (414)
                      +..+...|..++..|+|++|+..|.+++.+                .|....++.++|.+ +...+++  ++|+..++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~a  107 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQL----------------RGENAELYAALATVLYYQASQHMTAQTRAMIDKA  107 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence            467889999999999999999999999999                67778899999999 8899999  9999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      ++++|++..+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus       108 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i  158 (177)
T 2e2e_A          108 LALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESI  158 (177)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHH
Confidence            999999999999999999999999999999999999999987655544444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.41  E-value=5.8e-12  Score=113.38  Aligned_cols=139  Identities=12%  Similarity=0.164  Sum_probs=118.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC----------CcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS----------QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA  333 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~----------~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  333 (414)
                      +..+...|..+++.|++++|+..|++++.+.+.....          ..........|....++.++|.++..+|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            6778899999999999999999999999852110000          001122224677889999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       334 ~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +..++++++++|.++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..+..
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  227 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL  227 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998887776553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.41  E-value=3.8e-12  Score=102.12  Aligned_cols=123  Identities=20%  Similarity=0.324  Sum_probs=111.9

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+...|..++..|++++|+..|.+++..                .+....++.++|.++...+++++|+..+++++...
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   65 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   65 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHc----------------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence            34678899999999999999999999987                55567789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      |.+..+++.+|.++..+|++++|+..++++++..|.+..++..++.++...++..+..+
T Consensus        66 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  124 (136)
T 2fo7_A           66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIE  124 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHH
Confidence            99999999999999999999999999999999999999999999999887776655443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.41  E-value=7.6e-13  Score=103.14  Aligned_cols=100  Identities=9%  Similarity=0.046  Sum_probs=94.4

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..++..|+|++|+..|++++++                .|....++.++|.++..+++|++|+..++++++++|
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQL----------------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            3667899999999999999999999998                566678899999999999999999999999999999


Q ss_pred             C--CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q psy793          346 N--NVKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       346 ~--~~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~  381 (414)
                      .  +..+++.+|.++..+ |++++|+..++++++..|.+
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9  999999999999999 99999999999999999975

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.40  E-value=7e-13  Score=110.71  Aligned_cols=94  Identities=13%  Similarity=0.129  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .|....+++++|.+++..|+|++|+..+++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus        17 ~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg   96 (148)
T 2vgx_A           17 SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAA   96 (148)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHH
T ss_pred             CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~~~~~~~~k  403 (414)
                      .++..+++..+..+
T Consensus        97 ~~~~~~g~~~~A~~  110 (148)
T 2vgx_A           97 ECLLQXGELAEAES  110 (148)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99998888776543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.40  E-value=2.6e-12  Score=128.16  Aligned_cols=122  Identities=15%  Similarity=0.134  Sum_probs=114.9

Q ss_pred             HHHHHhhhHHhhh---------cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh--------
Q psy793          265 RTIKNSGNEYFKL---------NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF--------  327 (414)
Q Consensus       265 ~~~~~~G~~~~~~---------~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l--------  327 (414)
                      ..+...|..++..         |+|++|+..|++|+++                .|....+|.++|.+|..+        
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~~~~  234 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM----------------DVLDGRSWYILGNAYLSLYFNTGQNP  234 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHHHhhcccc
Confidence            4577889999999         9999999999999999                788889999999999999        


Q ss_pred             hCHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          328 KAYKRAINLCDDILLMEP---NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       328 ~~~~~A~~~~~~al~~~p---~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++|++|+.+++++++++|   .++.+|+++|.+|..+|++++|+..|+++++++|++..++..++.++..+++..+.-
T Consensus       235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi  312 (474)
T 4abn_A          235 KISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLL  312 (474)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999   999999999999999999999999999999999999999999999999988876653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.39  E-value=6.9e-12  Score=106.68  Aligned_cols=123  Identities=20%  Similarity=0.301  Sum_probs=113.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+...|..++..|++++|+..|.+++..                .|....++.++|.++...+++++|+..+++++..
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  105 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLAD----------------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA  105 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            455788899999999999999999999988                5666788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|.+..+++.+|.++..+|++++|+..|+++++..|.+..++..++.++...++..+..
T Consensus       106 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A          106 NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999998887766544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=3.1e-12  Score=115.16  Aligned_cols=113  Identities=20%  Similarity=0.307  Sum_probs=106.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|++|+..|++++..                .|....++.++|.++.+++++++|+.+++++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  201 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----------------APEDARGYSNRAAALAKLMSFPEAIADCNKAIE  201 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3567888999999999999999999999998                666778999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL------PNDQQILKEIAFV  391 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~------P~~~~~~~~l~~~  391 (414)
                      ++|+++.+++.+|.++..+|++++|+..|+++++++      |++..++..+..+
T Consensus       202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          202 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999999999999999999999      9999998888765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=3.4e-12  Score=127.37  Aligned_cols=123  Identities=11%  Similarity=0.007  Sum_probs=115.3

Q ss_pred             HHHHHHhhhHHhhhcCH-HHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          264 IRTIKNSGNEYFKLNRM-HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      +..+..+|..++..|+| ++|+..|++|+++                +|....+|.++|.+|.++|++++|+.+++++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~  165 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKL----------------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT  165 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            56788999999999999 9999999999999                788889999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH--------HHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSM---------NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM--------RHHLNLEK  403 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~l---------g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~--------~~~~~~~k  403 (414)
                      ++|+ ..+++.+|.++..+         |++++|+..|+++++++|++..++..++.++..+        ++..+..+
T Consensus       166 ~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~  242 (474)
T 4abn_A          166 HCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS  242 (474)
T ss_dssp             TCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             hCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence            9998 79999999999999         9999999999999999999999999999999888        66665543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.37  E-value=5e-12  Score=128.88  Aligned_cols=123  Identities=14%  Similarity=0.126  Sum_probs=115.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|++|+++                .|....++.++|.+|..+|++++|+.++++++++
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   86 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL----------------HPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDA   86 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            567889999999999999999999999998                7778899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH---HHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM---RHHLNLE  402 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~---~~~~~~~  402 (414)
                      +|++..+++++|.++..+|++++|+..|+++++++|++..++..++.++..+   ++..+..
T Consensus        87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~  148 (568)
T 2vsy_A           87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS  148 (568)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH
Confidence            9999999999999999999999999999999999999999999999999888   6655543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.36  E-value=1.3e-11  Score=112.43  Aligned_cols=114  Identities=16%  Similarity=0.104  Sum_probs=105.5

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..++..|++++|+..|++++.+                .|....++.++|.+|..+|++++|+.++++++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  104 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL  104 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            34677889999999999999999999999998                67778899999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      +++|.+..+++.+|.++..+|++++|+..|+++++++|++......+..+
T Consensus       105 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            99999999999999999999999999999999999999998766655544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.36  E-value=1.3e-12  Score=136.26  Aligned_cols=122  Identities=11%  Similarity=0.048  Sum_probs=109.2

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+..+|..+++.|+|++|+..|++|+++                +|....+|+++|.+|.++|+|++|+..|++|++++
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~  497 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAER----------------VGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTF  497 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhcc----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45677899999999999999999999998                78888899999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      |+++.+++++|.++..+|++++ +..|++|++++|++..++.+++.++..+++..+...
T Consensus       498 P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          498 PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999999999 999999999999999999999999888887766543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.36  E-value=2.4e-12  Score=117.50  Aligned_cols=126  Identities=13%  Similarity=0.157  Sum_probs=107.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..++..|..+++.|+|++|+..|++++...+.             .+....+++++|.||+++|+|++|+..+++++++
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   81 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-------------HEWAADAQFYLARAYYQNKEYLLAASEYERFIQI   81 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-------------CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            567899999999999999999999999987211             1233789999999999999999999999999999


Q ss_pred             CCCC---HHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCHHHH-----------------HHHHHHHHHH
Q psy793          344 EPNN---VKALFRRGRAQVS--------MNNFEQGLQDYEQALDLLPNDQQIL-----------------KEIAFVRKQM  395 (414)
Q Consensus       344 ~p~~---~~a~~~~g~~~~~--------lg~~~~A~~~~~~al~l~P~~~~~~-----------------~~l~~~~~~~  395 (414)
                      .|++   ..+++.+|.++..        +|++++|+..|+++++.+|++..+.                 ..++.++...
T Consensus        82 ~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~  161 (261)
T 3qky_A           82 YQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERR  161 (261)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            8854   6799999999999        9999999999999999999987666                 5556666666


Q ss_pred             HHHHHHH
Q psy793          396 RHHLNLE  402 (414)
Q Consensus       396 ~~~~~~~  402 (414)
                      ++..+..
T Consensus       162 g~~~~A~  168 (261)
T 3qky_A          162 ELYEAAA  168 (261)
T ss_dssp             TCHHHHH
T ss_pred             cCHHHHH
Confidence            6555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.36  E-value=1.8e-11  Score=111.65  Aligned_cols=119  Identities=14%  Similarity=0.123  Sum_probs=106.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH--------hhCHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK--------FKAYKRAIN  335 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~--------l~~~~~A~~  335 (414)
                      ...+...|..+++.|+|++|+..|++++...+.             .+....+++++|.|+++        ++++++|+.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~-------------~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~  118 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQI-------------DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIE  118 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-------------CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC-------------CchhHHHHHHHHHHHHHhcccccccchhHHHHHH
Confidence            566889999999999999999999999998321             22556889999999999        999999999


Q ss_pred             HHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHH
Q psy793          336 LCDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPN---DQQILKEIAFVRKQM  395 (414)
Q Consensus       336 ~~~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~---~~~~~~~l~~~~~~~  395 (414)
                      .++++++..|++..+.                 +.+|.+|..+|++++|+..|+++++..|+   ...++..++.++..+
T Consensus       119 ~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          119 AFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            9999999999987666                 89999999999999999999999999998   567889999998877

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.36  E-value=7.3e-12  Score=110.07  Aligned_cols=104  Identities=14%  Similarity=0.214  Sum_probs=97.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|.+|+.+                .|....++.++|.+|..+++|++|+.++++++++
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  100 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINR----------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQ  100 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence            456889999999999999999999999998                6777899999999999999999999999999998


Q ss_pred             CCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          344 EPNNV----------------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       344 ~p~~~----------------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      .|.+.                .+++++|.++..+|++++|+..|+++++++|++..
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          101 LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccccc
Confidence            88776                99999999999999999999999999999997643

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.34  E-value=5.1e-12  Score=120.41  Aligned_cols=124  Identities=10%  Similarity=0.127  Sum_probs=111.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|++++|+..|++++.+                .|....++.++|.++.++|++++|+..+++++++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  280 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV----------------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL  280 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456778899999999999999999999988                6667789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------HHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-----------QQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~-----------~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +|++..+++.+|.++..+|++++|+..|++++++.|++           ..++..++.++..+++..+..+
T Consensus       281 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          281 QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            99999999999999999999999999999999999988           8899999999988887766543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.34  E-value=1.8e-11  Score=115.49  Aligned_cols=123  Identities=26%  Similarity=0.368  Sum_probs=109.2

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ......|..+++.|++++|+..|++++...+..            ......++.++|.++.++|++++|+..++++++++
T Consensus       235 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          235 NKLIESAEELIRDGRYTDATSKYESVMKTEPSV------------AEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSS------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc------------hHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            345567999999999999999999999973221            23345678899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      |+++.+++.+|.++..+|++++|+..|+++++++|++..++..+..++..+++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999988777543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.34  E-value=1.7e-11  Score=109.53  Aligned_cols=121  Identities=18%  Similarity=0.152  Sum_probs=83.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|++++|+..|.+++..                .+....++.++|.++..++++++|+..+++++++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  120 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALEL----------------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA  120 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----------------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            455777888888888888888888888877                4445566666666666666666666666666666


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      +|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+
T Consensus       121 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          121 GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence            666666666666666666666666666666666666666666666666655554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.33  E-value=1.6e-11  Score=109.58  Aligned_cols=110  Identities=13%  Similarity=0.183  Sum_probs=96.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+..+|..+++.|+|++|+..|++++...+.             .+....+++++|.+|.++|+|++|+..++++++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~-------------~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~   70 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPF-------------GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   70 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-------------STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            456889999999999999999999999987221             2334578999999999999999999999999999


Q ss_pred             CCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          344 EPNNVK---ALFRRGRAQVS------------------MNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       344 ~p~~~~---a~~~~g~~~~~------------------lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      +|++..   +++.+|.++..                  +|++++|+..|+++++..|++..+..
T Consensus        71 ~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           71 NPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             CcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            999875   89999999986                  57999999999999999999875543

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=7.9e-12  Score=106.31  Aligned_cols=124  Identities=14%  Similarity=0.120  Sum_probs=114.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|++++|+..|++++..                .|....++.++|.++...+++++|+..++++++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~   70 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDA----------------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA   70 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT----------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4667889999999999999999999999987                555678899999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++|.+..+++.+|.++..+|++++|+..|+++++.+|++..++..++.++...++..+..
T Consensus        71 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~  130 (186)
T 3as5_A           71 DAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAI  130 (186)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHH
Confidence            999999999999999999999999999999999999999999999999988877766543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.33  E-value=6.3e-12  Score=120.07  Aligned_cols=124  Identities=11%  Similarity=0.157  Sum_probs=108.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+...|++++|+..|++++++                .|....+|.++|.+|.++|++++|+..+++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  276 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTV----------------RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI  276 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            445778899999999999999999999998                6777789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------------DQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~------------~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +|+++.+++.+|.++..+|++++|+..|+++++++|+            +..++..++.+...+++....++
T Consensus       277 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  348 (365)
T 4eqf_A          277 QPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQA  348 (365)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence            9999999999999999999999999999999999887            35678888888888777665544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.32  E-value=1.9e-12  Score=110.78  Aligned_cols=119  Identities=10%  Similarity=0.027  Sum_probs=105.0

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV  348 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~  348 (414)
                      ..++.++..|+|++|+..|++++..                .|....++.++|.+|..+++|++|+.+++++++++|+++
T Consensus        15 ~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~   78 (177)
T 2e2e_A           15 DPLHQFASQQNPEAQLQALQDKIRA----------------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA   78 (177)
T ss_dssp             TTTCCCC-----CCCCHHHHHHHHH----------------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH
T ss_pred             hhhhhhhhccCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH
Confidence            3566788899999999999999998                677788999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          349 KALFRRGRA-QVSMNNF--EQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       349 ~a~~~~g~~-~~~lg~~--~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .+++.+|.+ +...|++  ++|+..|+++++++|++..++..++.++...++..+...
T Consensus        79 ~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  136 (177)
T 2e2e_A           79 ELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE  136 (177)
T ss_dssp             HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH
Confidence            999999999 8899999  999999999999999999999999999988877766544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.32  E-value=4.8e-12  Score=104.46  Aligned_cols=94  Identities=15%  Similarity=0.155  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .|.....++++|.++++.|+|++|+..+++++.++|+++.+|+.+|.++..+|++++|+..|+++++++|+++.++..++
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   93 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAA   93 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHH
Confidence            78888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~~~~~~~~k  403 (414)
                      .++..+++..+..+
T Consensus        94 ~~~~~~g~~~~A~~  107 (142)
T 2xcb_A           94 ECHLQLGDLDGAES  107 (142)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHH
Confidence            99998888776543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.32  E-value=7.8e-13  Score=103.49  Aligned_cols=94  Identities=20%  Similarity=0.299  Sum_probs=76.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|++|+++                .|....++.++|.|+.++|+|++|+.++++++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA----------------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            556778888888888888888888888887                6666778888888888888888888888888888


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793          344 EPNN------VKALFRRGRAQVSMNNFEQGLQDYEQ  373 (414)
Q Consensus       344 ~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~  373 (414)
                      +|++      ..+++++|.++..+|+++.|+..+++
T Consensus        68 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           68 TSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             CSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            8887      78888888888888887777665554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.32  E-value=8.1e-12  Score=119.30  Aligned_cols=120  Identities=12%  Similarity=0.133  Sum_probs=104.7

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH--HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      +...|..+.+.|++++|+..|++++.+                .|.  ...++.++|.+|.++|++++|+..++++++++
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  243 (365)
T 4eqf_A          180 TRRMSKSPVDSSVLEGVKELYLEAAHQ----------------NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR  243 (365)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHH----------------SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHh----------------CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            445688999999999999999999998                555  67789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      |+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..+..
T Consensus       244 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          244 PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999999999999999999999999998888766654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.32  E-value=1.3e-11  Score=110.33  Aligned_cols=123  Identities=14%  Similarity=0.178  Sum_probs=108.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ...+...|..++..|++++|+..|+++++.                .+....++.++|.++.+++++++|+..+++++++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRA----------------GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            345778899999999999999999999998                5556678899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|.+..+++.+|.++..+|++++|+..|+++++.+|++..++..++.++...++..+..
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  213 (243)
T 2q7f_A          155 NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKAL  213 (243)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHH
T ss_pred             CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHH
Confidence            99999999999999999999999999999999999999999999998888776665543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.31  E-value=1.2e-12  Score=136.62  Aligned_cols=113  Identities=10%  Similarity=0.001  Sum_probs=107.1

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+..+|..+++.|+|++|+..|++|+++                +|....+|+++|.+|.++|+|++ +.+|++|++++
T Consensus       468 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~  530 (681)
T 2pzi_A          468 RLVWYRAVAELLTGDYDSATKHFTEVLDT----------------FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN  530 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence            45677899999999999999999999999                78888999999999999999999 99999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      |++..+|+++|.++..+|++++|+..|+++++++|++..++..++.++..
T Consensus       531 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          531 DGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             CchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999988744

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.31  E-value=1.4e-11  Score=97.56  Aligned_cols=103  Identities=13%  Similarity=0.151  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Q psy793          282 DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM  361 (414)
Q Consensus       282 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l  361 (414)
                      .|+..|+++++.                .|....+++++|.+|..+|+|++|+..++++++++|.+..+|+.+|.++..+
T Consensus         3 ~a~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~   66 (115)
T 2kat_A            3 AITERLEAMLAQ----------------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQ   66 (115)
T ss_dssp             CHHHHHHHHHTT----------------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHc
Confidence            578889999987                6777889999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHHHHHHH
Q psy793          362 NNFEQGLQDYEQALDLLPN--DQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       362 g~~~~A~~~~~~al~l~P~--~~~~~~~l~~~~~~~~~~~~  400 (414)
                      |++++|+..|+++++++|.  +..+...+..+...+++...
T Consensus        67 g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~~~~  107 (115)
T 2kat_A           67 GDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDA  107 (115)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhccccC
Confidence            9999999999999999884  55666666666666655443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.31  E-value=3.4e-11  Score=105.91  Aligned_cols=138  Identities=12%  Similarity=0.043  Sum_probs=83.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      +..+...|..++..|++++|+..|++++...+.....           ..       ........|....++.++|.++.
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4455666666666666666666666666652110000           00       00111113444556677777777


Q ss_pred             Hh-hCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KF-KAYKRAINLCDDILL--MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       326 ~l-~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .+ +++++|+..++++++  .+|.+..+++.+|.++..+|++++|+..|+++++.+|++..++..++.++...++..+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHH
Confidence            77 777777777777776  45555667777777777777777777777777777777777777777776666655544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.31  E-value=2.9e-11  Score=108.91  Aligned_cols=135  Identities=11%  Similarity=0.025  Sum_probs=69.9

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHh--hHHHHHHHHHHHHHHHH
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKH--FRSYYTAALLNMAAVQL  325 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~--~~~~~~~~~~nla~~~~  325 (414)
                      .+...|..++..|++++|+..|.+++...+.....           ..       ......  ..+....++.++|.++.
T Consensus        73 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~  152 (252)
T 2ho1_A           73 AHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSL  152 (252)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHH
Confidence            45566666777777777777777776652100000           00       000000  12334455555555555


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      ++|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++..|.+..++..+..++...++..+
T Consensus       153 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  227 (252)
T 2ho1_A          153 QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDT  227 (252)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHH
Confidence            555555555555555555555555555555555555555555555555555555555555555555554444433

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.30  E-value=1.3e-11  Score=105.83  Aligned_cols=120  Identities=13%  Similarity=0.050  Sum_probs=98.5

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH-------
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD-------  338 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~-------  338 (414)
                      .+...|..++..|++++|+..|+++++.                +|....++.++|.++.++|++++|+..++       
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p   71 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDE----------------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ   71 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHH----------------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC
Confidence            3677899999999999999999999998                77778888888888888888777765544       


Q ss_pred             ---------------------------HHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHHHH
Q psy793          339 ---------------------------DILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKEIA  389 (414)
Q Consensus       339 ---------------------------~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~l~  389 (414)
                                                 ++++++|+++.+++.+|.++..+|++++|+..|+++++++|+.  ..++..++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~  151 (176)
T 2r5s_A           72 DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFM  151 (176)
T ss_dssp             CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHH
Confidence                                       4445577888889999999999999999999999999999875  56888888


Q ss_pred             HHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNL  401 (414)
Q Consensus       390 ~~~~~~~~~~~~  401 (414)
                      .++..+++..+.
T Consensus       152 ~~~~~~g~~~~A  163 (176)
T 2r5s_A          152 DILSALGQGNAI  163 (176)
T ss_dssp             HHHHHHCSSCHH
T ss_pred             HHHHHhCCCCcH
Confidence            888877766543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.30  E-value=1.8e-11  Score=113.84  Aligned_cols=122  Identities=10%  Similarity=-0.019  Sum_probs=106.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH-------
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL-------  336 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~-------  336 (414)
                      ...+...|..+...|++++|+..|+++++.                +|....+++++|.++..+|++++|+..       
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~  180 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQL----------------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ  180 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh----------------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence            456788999999999999999999999999                777788888888888888888877655       


Q ss_pred             ---------------------------HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--HHHHHH
Q psy793          337 ---------------------------CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND--QQILKE  387 (414)
Q Consensus       337 ---------------------------~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~--~~~~~~  387 (414)
                                                 +++++..+|++..+++.+|.++..+|++++|+..|+++++.+|++  ..++..
T Consensus       181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~  260 (287)
T 3qou_A          181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT  260 (287)
T ss_dssp             GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred             hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence                                       445566789999999999999999999999999999999999998  889999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          388 IAFVRKQMRHHLNL  401 (414)
Q Consensus       388 l~~~~~~~~~~~~~  401 (414)
                      +..++..+++..+.
T Consensus       261 l~~~~~~~g~~~~a  274 (287)
T 3qou_A          261 FQEILAALGTGDAL  274 (287)
T ss_dssp             HHHHHHHHCTTCHH
T ss_pred             HHHHHHHcCCCCcH
Confidence            99999888765443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.29  E-value=2.8e-11  Score=97.28  Aligned_cols=92  Identities=11%  Similarity=0.136  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      .....+.++|.++++.++|++|+..++++++++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHH
Q psy793          392 RKQMRHHLNLEK  403 (414)
Q Consensus       392 ~~~~~~~~~~~k  403 (414)
                      +..+++..+...
T Consensus        82 ~~~~~~~~~A~~   93 (126)
T 3upv_A           82 QIAVKEYASALE   93 (126)
T ss_dssp             HHHTTCHHHHHH
T ss_pred             HHHHhCHHHHHH
Confidence            998888766543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=4.1e-11  Score=105.36  Aligned_cols=92  Identities=12%  Similarity=-0.031  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP-NDQQILKEI  388 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P-~~~~~~~~l  388 (414)
                      .+....++.++|.++.++|++++|+..++++++.+|.+..+++.+|.++..+|++++|+..|++++++.| .+..++..+
T Consensus       109 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~  188 (225)
T 2vq2_A          109 YPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG  188 (225)
T ss_dssp             CSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            3455788999999999999999999999999999999999999999999999999999999999999999 999998888


Q ss_pred             HHHHHHHHHHHHH
Q psy793          389 AFVRKQMRHHLNL  401 (414)
Q Consensus       389 ~~~~~~~~~~~~~  401 (414)
                      ..+....+...+.
T Consensus       189 ~~~~~~~~~~~~a  201 (225)
T 2vq2_A          189 WKIAKALGNAQAA  201 (225)
T ss_dssp             HHHHHHTTCHHHH
T ss_pred             HHHHHhcCcHHHH
Confidence            8887776665544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.29  E-value=2.4e-11  Score=114.61  Aligned_cols=111  Identities=15%  Similarity=0.228  Sum_probs=104.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|++++..                .|....++.++|.++..+|++++|+..+++++++
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   66 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIAL   66 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            567899999999999999999999999998                6777889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP---NDQQILKEIAF  390 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P---~~~~~~~~l~~  390 (414)
                      +|++..+++.+|.++..+|++++|+..|+++++++|   ++..++..+..
T Consensus        67 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           67 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            999999999999999999999999999999999999   88888887743

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.29  E-value=7.3e-12  Score=114.14  Aligned_cols=123  Identities=13%  Similarity=0.038  Sum_probs=63.5

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------CcHHHHHhh---------H-HHHHHHHHHHHHHHH
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QSKTQQKHF---------R-SYYTAALLNMAAVQL  325 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~~~~~~~~---------~-~~~~~~~~nla~~~~  325 (414)
                      +...|..++..|+|++|+..|+++++..+.....           ...++....         . .....+|.++|.++.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            5566667777777777777777776652111100           000000000         0 111334555555555


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .++++++|+.+++++++++|.++.+++.+|.++..+|++++|+..|+++++++|.+..++..++
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~  149 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG  149 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHH
Confidence            5555555555555555555555555555555555555555555555555555555555555555

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.29  E-value=1.8e-11  Score=118.07  Aligned_cols=117  Identities=18%  Similarity=0.245  Sum_probs=70.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.|++++|+..|++++++                .|....+|.++|.++.++|++++|+..+++++++
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  130 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL----------------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY  130 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456888999999999999999999999987                3444444555555555555555555555555555


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +|++..++..+|.++..+|++++|+..|+++++.+|++..++..++.++...+
T Consensus       131 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  183 (388)
T 1w3b_A          131 NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQG  183 (388)
T ss_dssp             CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            55555555555555555555555555555555555555444444444444333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.29  E-value=2.2e-11  Score=109.75  Aligned_cols=139  Identities=16%  Similarity=0.117  Sum_probs=87.2

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQ  324 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~  324 (414)
                      .+..+...|..++..|++++|+..|++++...+.....           ..       ..+.....|....++.++|.++
T Consensus        36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~  115 (252)
T 2ho1_A           36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence            37889999999999999999999999999872211100           00       1111222233445566666666


Q ss_pred             HHhhCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILL--MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~--~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      ..++++++|+..+++++.  ..|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.++...++..+.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            666666666666666666  55556666666666666666666666666666666666666666666666555544443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.28  E-value=3e-11  Score=112.72  Aligned_cols=123  Identities=13%  Similarity=0.154  Sum_probs=113.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.|++++|+..|++++..                .|....++.++|.++..++++++|+..+++++++
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  235 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVEL----------------RPDDAQLWNKLGATLANGNRPQEALDAYNRALDI  235 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            455777899999999999999999999998                6667789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------------DQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~------------~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|++..+++.+|.++..+|++++|+..|++++++.|+            +..++..++.++..+++..+..
T Consensus       236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999999999999999999999999            7899999999998888776654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.28  E-value=3e-11  Score=116.39  Aligned_cols=139  Identities=15%  Similarity=0.121  Sum_probs=99.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-------------Cc-----HHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-------------QS-----KTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-------------~~-----~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      +..+...|..+.+.|++++|+..|++++++-+.....             ..     ........|....++.++|.++.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            3456778888888888888888888888762211100             00     11222334556677788888888


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|+++++++|.+..++..++.++...++..+..
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  325 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888887777766665543

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.28  E-value=5.2e-11  Score=110.81  Aligned_cols=130  Identities=6%  Similarity=-0.005  Sum_probs=108.0

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-KAYKRAINLCDDIL  341 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~~~~~A~~~~~~al  341 (414)
                      .+..+.+.|+.+.+.|+|++|+.+|++|+.+.+...          .......++.++|.+|..+ |++++|+.++++|+
T Consensus        76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g----------~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG----------QFRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            467788999999999999999999999999854332          0223467899999999995 99999999999999


Q ss_pred             hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-------HHHHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ-------ILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       342 ~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~-------~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++.|..      ..++.++|.++..+|+|++|+..|++++++.|++..       ++..++.++..+++..+..
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  219 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAA  219 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            998754      567999999999999999999999999999988653       4577777777766655543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.28  E-value=3.5e-11  Score=109.58  Aligned_cols=118  Identities=14%  Similarity=0.082  Sum_probs=108.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+...|++++|+..|++++++                .|....++.++|.+|..+|++++|+.++++++++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  137 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR----------------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP  137 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhc----------------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence            456788999999999999999999999998                6777789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +|.++.+++.+|...+..+++++|+..|+++++++|++..++..++.+...+++
T Consensus       138 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          138 TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            999999999999445555699999999999999999999999999998887765

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.26  E-value=8.7e-11  Score=94.27  Aligned_cols=92  Identities=14%  Similarity=0.076  Sum_probs=85.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      .++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.++...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHh
Q psy793          396 RHHLNLEKMTYAR  408 (414)
Q Consensus       396 ~~~~~~~k~~~~~  408 (414)
                      ++..+... .+.+
T Consensus        99 g~~~~A~~-~~~~  110 (121)
T 1hxi_A           99 HNANAALA-SLRA  110 (121)
T ss_dssp             HHHHHHHH-HHHH
T ss_pred             CCHHHHHH-HHHH
Confidence            88877654 3443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.26  E-value=1.9e-11  Score=99.05  Aligned_cols=91  Identities=12%  Similarity=0.139  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-------H
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-------Q  383 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-------~  383 (414)
                      +....++.++|.++++.|+|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+.+|+++++++|++.       .
T Consensus         5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            456678899999999999999999999999999999999999999999999999999999999999998764       3


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy793          384 ILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       384 ~~~~l~~~~~~~~~~~~~  401 (414)
                      ++..++.++..+++..+.
T Consensus        85 ~~~~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLA  102 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHH
Confidence            555666666655555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.26  E-value=5.3e-11  Score=110.72  Aligned_cols=135  Identities=11%  Similarity=0.083  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy793          258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  337 (414)
Q Consensus       258 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  337 (414)
                      ++..+.+..+...|+.+...|+|++|+.+|.+|+.+.+...          ..+....+|.++|.+|.++|++++|+.++
T Consensus        31 ~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~  100 (292)
T 1qqe_A           31 YKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG----------NEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----------CHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34555667777889999999999999999999999854332          12345789999999999999999999999


Q ss_pred             HHHHhcCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q psy793          338 DDILLMEPNN------VKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       338 ~~al~~~p~~------~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++|+++.+..      +.++.++|.+|..+ |++++|+..|++|+++.|.+      ..++..++.++..+++..+..
T Consensus       101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~  178 (292)
T 1qqe_A          101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS  178 (292)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            9999997653      56899999999995 99999999999999998864      456788888888887776653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.26  E-value=5e-11  Score=118.60  Aligned_cols=107  Identities=19%  Similarity=0.314  Sum_probs=100.1

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      .+.+..++..|+.+++.|+|++|+..|++++..                .| ...++.++|.|+.++|+|++|+.+++++
T Consensus         3 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p-~~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            3 DKYALALKDKGNQFFRNKKYDDAIKYYNWALEL----------------KE-DPVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH----------------CC-CHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhccHHHHHHHHHHHHhc----------------Cc-cHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            467889999999999999999999999999998                55 4788999999999999999999999999


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                      ++++|++..+++.+|.++..+|++++|+..|+++++++|.+...
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  109 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDAS  109 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccch
Confidence            99999999999999999999999999999999999999866443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.26  E-value=5.7e-11  Score=108.06  Aligned_cols=133  Identities=21%  Similarity=0.156  Sum_probs=114.9

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..++..|+|++|+..|.+++.+......        ...+....++.++|.+|..++++++|+.++++++
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  112 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLG--------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            34667888999999999999999999999998533200        1136778899999999999999999999999999


Q ss_pred             hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          342 LM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--------LPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       342 ~~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      .+        +|....+++.+|.++..+|++++|+..|++++++        .|....++..++.++...++..+..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  189 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAE  189 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            88        5777889999999999999999999999999999        7777888999999998888776654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.26  E-value=3e-11  Score=112.85  Aligned_cols=123  Identities=20%  Similarity=0.264  Sum_probs=107.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|++++|+..|++++.+.+.......       .+....++.++|.++.++|++++|+..+++++++
T Consensus       193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  265 (330)
T 3hym_B          193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVT-------VDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL  265 (330)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCT-------TTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcccccc-------ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence            355778899999999999999999999988432221000       1445678999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      +|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++.
T Consensus       266 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  315 (330)
T 3hym_B          266 IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIE  315 (330)
T ss_dssp             STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHH
T ss_pred             CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998774

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.26  E-value=6e-11  Score=110.49  Aligned_cols=119  Identities=13%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHH----HHHhhCHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAV----QLKFKAYKRAINLCDD  339 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~----~~~l~~~~~A~~~~~~  339 (414)
                      ...+...|..+.+.|++++|+..|+++++.                .|...  ..+++.+    +...+++++|+..+++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~----------------~p~~~--~~~l~~a~~~l~~~~~~~~eA~~~~~~  191 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQ----------------DEDAT--LTQLATAWVSLAAGGEKLQDAYYIFQE  191 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCH--HHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh----------------CcCcH--HHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            345777899999999999999999999987                22211  1122211    2233666666666666


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHH
Q psy793          340 ILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      +++.+|+++.+++.+|.++..+|++++|+..|+++++++|+++.++.+++.+....++..+
T Consensus       192 ~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~e  252 (291)
T 3mkr_A          192 MADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPE  252 (291)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHH
Confidence            6666666666666666666666666666666666666666666666666666655555443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.25  E-value=9.4e-11  Score=114.87  Aligned_cols=120  Identities=27%  Similarity=0.375  Sum_probs=106.4

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .....|..+++.|++++|+..|++++.+.+. .           ......++.++|.++.++|++++|+..++++++++|
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKTEPS-I-----------AEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-S-----------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-c-----------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            3455699999999999999999999987221 0           123356899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +++.+|+.+|.++..+|++++|+..|+++++++|++..++..++.+...+++
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999999988766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.25  E-value=6e-11  Score=105.89  Aligned_cols=132  Identities=13%  Similarity=0.069  Sum_probs=110.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-----------------
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-----------------  326 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-----------------  326 (414)
                      ...+..+|..+++.|+|++|+..|+++++..+..             +....+++.+|.++.+                 
T Consensus        41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~-------------~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~  107 (225)
T 2yhc_A           41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH-------------PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDR  107 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------------TTHHHHHHHHHHHHHHHHC--------------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC-------------CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhc
Confidence            3568889999999999999999999999983321             2223578888888876                 


Q ss_pred             -hhCHHHHHHHHHHHHhcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHH
Q psy793          327 -FKAYKRAINLCDDILLMEPNNVKAL-----------------FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QIL  385 (414)
Q Consensus       327 -l~~~~~A~~~~~~al~~~p~~~~a~-----------------~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~  385 (414)
                       ++++++|+..++++++..|++..++                 +.+|.+|+.+|++++|+..|+++++..|+++   .++
T Consensus       108 ~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  187 (225)
T 2yhc_A          108 DPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDAL  187 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHH
Confidence             5799999999999999999987654                 6789999999999999999999999999986   678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          386 KEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       386 ~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      ..++.++..+++..+..+ .++++
T Consensus       188 ~~l~~~~~~~g~~~~A~~-~~~~l  210 (225)
T 2yhc_A          188 PLMENAYRQMQMNAQAEK-VAKII  210 (225)
T ss_dssp             HHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHHcCCcHHHHH-HHHHH
Confidence            999999999888877654 34443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.24  E-value=9.5e-11  Score=87.92  Aligned_cols=85  Identities=22%  Similarity=0.423  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      +....++.++|.++..+++|++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.
T Consensus         6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~   85 (91)
T 1na3_A            6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGN   85 (91)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHH
Q psy793          391 VRKQM  395 (414)
Q Consensus       391 ~~~~~  395 (414)
                      ++..+
T Consensus        86 ~~~~~   90 (91)
T 1na3_A           86 AKQKQ   90 (91)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            87653

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.23  E-value=1.8e-10  Score=112.77  Aligned_cols=114  Identities=15%  Similarity=0.207  Sum_probs=106.2

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..+++.|+|++|+..|++++..                .|....++.++|.++..+|++++|+..+++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   87 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG----------------DPDNYIAYYRRATVFLAMGKSKAALPDLTKVI   87 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            34778999999999999999999999999998                67778999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH---HHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ---QILKEIAFV  391 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~---~~~~~l~~~  391 (414)
                      +++|++..+++.+|.++..+|++++|+..|+++++++|++.   .++..+..+
T Consensus        88 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~  140 (450)
T 2y4t_A           88 QLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKS  140 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998   777666444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.23  E-value=5.8e-11  Score=110.88  Aligned_cols=123  Identities=18%  Similarity=0.131  Sum_probs=113.0

Q ss_pred             HHHHHhhhHHhhhc-CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          265 RTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       265 ~~~~~~G~~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ..+...|..++..| ++++|+..|.+++.+                .|....++.++|.++..++++++|+..+++++++
T Consensus        91 ~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  154 (330)
T 3hym_B           91 VSWFAVGCYYLMVGHKNEHARRYLSKATTL----------------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL  154 (330)
T ss_dssp             HHHHHHHHHHHHSCSCHHHHHHHHHHHHTT----------------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            45778899999999 999999999999988                6677788999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .|++..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+..+
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~  214 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK  214 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH
Confidence            999999999999999999999999999999999999999999999999988877766543

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.22  E-value=1.2e-10  Score=90.71  Aligned_cols=83  Identities=13%  Similarity=0.240  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKE  387 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~  387 (414)
                      ...+.++|.+++.+|+|++|+..++++++++|.++.+++++|.++..+|++++|+..|+++++++|++      ..++..
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999998      777777


Q ss_pred             HHHHHHHHH
Q psy793          388 IAFVRKQMR  396 (414)
Q Consensus       388 l~~~~~~~~  396 (414)
                      ++.++..++
T Consensus        84 ~~~~~~~~~   92 (111)
T 2l6j_A           84 LELAQGAVG   92 (111)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777776665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.22  E-value=1.2e-10  Score=115.01  Aligned_cols=127  Identities=13%  Similarity=0.048  Sum_probs=103.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+..+|..+..+|+|++|+.+|++|+++.+.....       ...+.....|.|+|.+|..+|+|++|+.++++++++
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~-------~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i  123 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD-------QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV  123 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGG-------GCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcc-------ccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            4557789999999999999999999999986543311       113555678999999999999999999999999976


Q ss_pred             C--------CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          344 E--------PNNVKALFRRGRAQVSM--NNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       344 ~--------p~~~~a~~~~g~~~~~l--g~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      .        +..+.++..+|.++..+  ++|++|+.+|++|++++|+++.++..++.+...+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~  187 (472)
T 4g1t_A          124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDN  187 (472)
T ss_dssp             HHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             hHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Confidence            3        45678888888887765  479999999999999999999999888887665543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.22  E-value=6.3e-11  Score=118.79  Aligned_cols=115  Identities=23%  Similarity=0.344  Sum_probs=99.6

Q ss_pred             cCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHH
Q psy793          254 TVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRA  333 (414)
Q Consensus       254 ~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A  333 (414)
                      .++.++..+.+..+...|+.+++.|+|++|+..|++++..                .|....++.++|.||.++|++++|
T Consensus        15 ~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~la~~~~~~g~~~~A   78 (537)
T 3fp2_A           15 GLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL----------------DPNEPVFYSNISACYISTGDLEKV   78 (537)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh----------------CCCCcHHHHHHHHHHHHcCCHHHH
Confidence            3457777888999999999999999999999999999999                788889999999999999999999


Q ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793          334 INLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  385 (414)
Q Consensus       334 ~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  385 (414)
                      +..++++++++|++..+++.+|.++..+|++++|+..|+ ++.++|+.....
T Consensus        79 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~~  129 (537)
T 3fp2_A           79 IEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGAS  129 (537)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC---------
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChHH
Confidence            999999999999999999999999999999999999996 999998876543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.21  E-value=1.4e-10  Score=92.85  Aligned_cols=101  Identities=25%  Similarity=0.436  Sum_probs=93.6

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+...|..++..|++++|+..|.+++..                .+....++.++|.++..++++++|+..+++++...
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~   99 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD   99 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHH----------------CCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            44667899999999999999999999988                55566789999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++
T Consensus       100 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          100 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999999999999999999999999999863

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.21  E-value=9.5e-11  Score=97.89  Aligned_cols=92  Identities=14%  Similarity=0.140  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh--
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN-------NVK-----ALFRRGRAQVSMNNFEQGLQDYEQALDL--  377 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~-------~~~-----a~~~~g~~~~~lg~~~~A~~~~~~al~l--  377 (414)
                      .....+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|++|+++  
T Consensus         9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A            9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence            34567899999999999999999999999999999       444     9999999999999999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHHHHHHHHHH
Q psy793          378 -----LPNDQQIL----KEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       378 -----~P~~~~~~----~~l~~~~~~~~~~~~~~k  403 (414)
                           +|++..++    .+++.++..+++..+...
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~  123 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMP  123 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH
Confidence                 99999999    999999999988887644

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.21  E-value=1.4e-10  Score=97.86  Aligned_cols=94  Identities=20%  Similarity=0.213  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .+.....+.++|.++++.++|++|+..++++++++|+++.+|+++|.+|..+|++++|+.+|+++++++|++..++..++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~~~~~~~~k  403 (414)
                      .++..+++..+..+
T Consensus        87 ~~~~~~g~~~~A~~  100 (164)
T 3sz7_A           87 LARFDMADYKGAKE  100 (164)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHccCHHHHHH
Confidence            99998888776544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.20  E-value=1.3e-10  Score=110.51  Aligned_cols=118  Identities=15%  Similarity=0.163  Sum_probs=108.3

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH--HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      ..|..+ ..|++++|+..|++++..                .|.  ...++.++|.++.++|++++|+..+++++.++|+
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~----------------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~  249 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRL----------------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN  249 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHH----------------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHh----------------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence            345554 889999999999999998                566  6789999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+...
T Consensus       250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~  306 (368)
T 1fch_A          250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE  306 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999999999999999998888766543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.20  E-value=7.8e-11  Score=107.19  Aligned_cols=122  Identities=9%  Similarity=-0.002  Sum_probs=108.0

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  349 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~  349 (414)
                      .+..+...++|++|+..|.+++...+ ..           .+....++.++|.++..+|++++|+..++++++++|.++.
T Consensus        11 ~~~~~~~~~~~~~A~~~~~~~~~~~~-~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~   78 (275)
T 1xnf_A           11 LAVPLQPTLQQEVILARMEQILASRA-LT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE   78 (275)
T ss_dssp             SCCCCCCCHHHHHHHHHHHHHHTSSC-CC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH
T ss_pred             eeeccCccchHHHHHHHHHHHHhccc-cc-----------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH
Confidence            44556667999999999999997511 01           4677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          350 ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       350 a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..+..+
T Consensus        79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~  132 (275)
T 1xnf_A           79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD  132 (275)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999999999999999999999999999999988877766543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.19  E-value=3.8e-10  Score=93.34  Aligned_cols=132  Identities=13%  Similarity=0.162  Sum_probs=109.0

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..+...|..++..|+|++|+..|.+++.+.+...          .......++.++|.++..++++++|+.+++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   75 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG----------DKAAERIAYSNLGNAYIFLGEFETASEYYKKT   75 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC----------CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45678899999999999999999999999999965422          13445678999999999999999999999999


Q ss_pred             HhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHHH
Q psy793          341 LLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       341 l~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~------~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +.+.+..      ..+++.+|.++..+|++++|+..+++++++.+.      ...+...++.++...++..+..
T Consensus        76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A           76 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence            9885443      678999999999999999999999999987432      2456777788877777665543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.18  E-value=2.7e-10  Score=103.57  Aligned_cols=139  Identities=14%  Similarity=0.111  Sum_probs=114.9

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..++..|++++|+..|.+|+.+......        ...+....++.++|.+|..+|++++|+.++++++
T Consensus        83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--------KFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34677899999999999999999999999998543210        0136778899999999999999999999999999


Q ss_pred             hc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------------------------
Q psy793          342 LM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL-----------------------------------  378 (414)
Q Consensus       342 ~~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~-----------------------------------  378 (414)
                      ++        .|....+++.+|.++..+|++++|+..|++++++.                                   
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY  234 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC----
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH
Confidence            99        77778899999999999999999999999999872                                   


Q ss_pred             --------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          379 --------------PNDQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       379 --------------P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                                    |....++..++.++...++..+..+ .+.+.
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a  278 (283)
T 3edt_B          235 GEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHT-LEDCA  278 (283)
T ss_dssp             --------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence                          4445677888888888777766544 34443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.18  E-value=2.6e-11  Score=115.45  Aligned_cols=112  Identities=13%  Similarity=0.154  Sum_probs=103.4

Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC--------
Q psy793          276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--------  347 (414)
Q Consensus       276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--------  347 (414)
                      ..+++++|+..|.+++..                .+....++.++|.+++++++|++|+..|++|+.++|.+        
T Consensus       125 ~L~~~~~A~~~~~~a~~~----------------~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~  188 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE----------------KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA  188 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH----------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHH
T ss_pred             EEeecccccchhcCCHHH----------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHH
Confidence            456777888888888888                88899999999999999999999999999999999998        


Q ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          348 -------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       348 -------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                             ..+|+++|.|+..+|+|++|+..|+++++++|++..++..++.++..+++..+...
T Consensus       189 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~  251 (336)
T 1p5q_A          189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARA  251 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence                   69999999999999999999999999999999999999999999998888776543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.18  E-value=1.1e-10  Score=90.18  Aligned_cols=85  Identities=16%  Similarity=0.306  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKE  387 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~  387 (414)
                      +|....+++++|.+|+++|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|+..|++++++.|.  +......
T Consensus         3 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~   82 (100)
T 3ma5_A            3 DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE   82 (100)
T ss_dssp             --CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHH
Confidence            46677899999999999999999999999999999999999999999999999999999999999999874  4555555


Q ss_pred             HHHHHHH
Q psy793          388 IAFVRKQ  394 (414)
Q Consensus       388 l~~~~~~  394 (414)
                      +..++..
T Consensus        83 l~~~l~~   89 (100)
T 3ma5_A           83 LQDAKLK   89 (100)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.16  E-value=9.6e-11  Score=119.35  Aligned_cols=111  Identities=17%  Similarity=0.110  Sum_probs=87.5

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  356 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~  356 (414)
                      .|++++|+..|+++++.                .|....++.++|.++..+|+|++|+..++++++++|++..+++.+|.
T Consensus         2 ~g~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   65 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRH----------------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGR   65 (568)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            47899999999999998                77788999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          357 AQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       357 ~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++..+|++++|+..|+++++++|++..++..++.++...++..+..+
T Consensus        66 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  112 (568)
T 2vsy_A           66 VRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA  112 (568)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999998888766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.15  E-value=2e-10  Score=115.06  Aligned_cols=144  Identities=13%  Similarity=0.095  Sum_probs=111.6

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc----------cCCc-------HHHHHhhHHHHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN----------QSQS-------KTQQKHFRSYYTAALLNMA  321 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~----------~~~~-------~~~~~~~~~~~~~~~~nla  321 (414)
                      .....+..+...|..++..|++++|+..|.+++...+...          ....       ........|....++.++|
T Consensus       238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  317 (537)
T 3fp2_A          238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG  317 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            3444567778888888888888888888888877632100          0000       1122233456678899999


Q ss_pred             HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .++..++++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+.
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888877776654


Q ss_pred             H
Q psy793          402 E  402 (414)
Q Consensus       402 ~  402 (414)
                      .
T Consensus       398 ~  398 (537)
T 3fp2_A          398 I  398 (537)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.15  E-value=4.8e-10  Score=104.40  Aligned_cols=115  Identities=14%  Similarity=0.163  Sum_probs=107.4

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      .+...|++++|+..|++++..                .|....++.++|.++.+++++++|+..++++++++|++..+++
T Consensus       147 ~~~~~~~~~~A~~~~~~~~~~----------------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  210 (327)
T 3cv0_A          147 FFAAPNEYRECRTLLHAALEM----------------NPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWN  210 (327)
T ss_dssp             CTTSHHHHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence            588999999999999999998                6667789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .+|.++..+|++++|+..|+++++++|++..++..++.++...++..+..+
T Consensus       211 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          211 KLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999999999999999999999999999988877766543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.15  E-value=4.3e-10  Score=108.38  Aligned_cols=132  Identities=14%  Similarity=0.154  Sum_probs=109.9

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..++..|++++|+.+|.+|+++.+....         ..+....++.++|.+|..+|+|++|+.++++|+
T Consensus       141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA---------YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST---------THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc---------chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999664431         135567889999999999999999999999999


Q ss_pred             hcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hC-CCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALD-----LL-PNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       342 ~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~-----l~-P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++.+..      ..+++++|.+|..+|++++|+..|+++++     .+ |....+...++.++..+++..+..
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  284 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH  284 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHH
Confidence            885433      35889999999999999999999999999     46 777888888888888777665543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.13  E-value=3.8e-10  Score=105.03  Aligned_cols=99  Identities=12%  Similarity=-0.003  Sum_probs=90.5

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      .+...|++++|+..|+++++.                .|....+++++|.++.++|+|++|+..++++|+++|+++.+++
T Consensus       175 l~~~~~~~~eA~~~~~~~l~~----------------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          175 LAAGGEKLQDAYYIFQEMADK----------------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHH----------------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHhCchHHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            344568999999999999998                6777889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHH-HHHHHHHHHhhCCCCHHHHHH
Q psy793          353 RRGRAQVSMNNFEQ-GLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       353 ~~g~~~~~lg~~~~-A~~~~~~al~l~P~~~~~~~~  387 (414)
                      ++|.++..+|++++ |..+++++++++|+++.+...
T Consensus       239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d~  274 (291)
T 3mkr_A          239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKEY  274 (291)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999976 568999999999999987653

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.13  E-value=3.2e-10  Score=92.03  Aligned_cols=93  Identities=16%  Similarity=0.065  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .+.....+.++|.++++.++|++|+..+++++.++|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus         5 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            5 KSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            34457789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLE  402 (414)
Q Consensus       390 ~~~~~~~~~~~~~  402 (414)
                      .++..+++..+..
T Consensus        85 ~~~~~~~~~~~A~   97 (137)
T 3q49_B           85 QCQLEMESYDEAI   97 (137)
T ss_dssp             HHHHHTTCHHHHH
T ss_pred             HHHHHHhhHHHHH
Confidence            9998888776654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.13  E-value=4.6e-10  Score=104.27  Aligned_cols=107  Identities=8%  Similarity=0.100  Sum_probs=93.7

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..|+..|+|++|+.+|++|+........         ..+....+++|+|.+|.++++|++|+.+++++++
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~  224 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD---------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc---------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            4667899999999999999999999999998654421         2567788999999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC
Q psy793          343 MEPNN------VKALFRRGRAQVSMN-NFEQGLQDYEQALDLL  378 (414)
Q Consensus       343 ~~p~~------~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~  378 (414)
                      +.+..      +.+|+++|.++..+| ++++|+..|++|+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            86443      789999999999999 5799999999999864

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.12  E-value=5.4e-11  Score=91.22  Aligned_cols=68  Identities=19%  Similarity=0.384  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  385 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  385 (414)
                      +++|.++++.++|++|+..++++++++|+++. +++.+|.++..+|++++|+..|+++++++|++..++
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            34555555556666666666666666555555 555666666666666666666666666666555554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.11  E-value=6.5e-11  Score=117.52  Aligned_cols=112  Identities=13%  Similarity=0.137  Sum_probs=103.4

Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC--------
Q psy793          276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN--------  347 (414)
Q Consensus       276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~--------  347 (414)
                      ..++|++|+..|.+++..                .+....++.++|.+++++++|++|+..|++||+++|.+        
T Consensus       246 ~l~~~~~A~~~~~~~~~~----------------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~  309 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE----------------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKES  309 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHH
T ss_pred             hhhhcccCcchhhcCHHH----------------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHH
Confidence            456778888888888888                78899999999999999999999999999999999998        


Q ss_pred             -------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          348 -------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       348 -------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                             ..+|+++|.||..+++|++|+.+|++|++++|++..++..++.++..+++..+..+
T Consensus       310 ~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~  372 (457)
T 1kt0_A          310 KASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKG  372 (457)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHH
Confidence                   69999999999999999999999999999999999999999999998888776543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.10  E-value=7.8e-10  Score=112.50  Aligned_cols=124  Identities=15%  Similarity=0.133  Sum_probs=112.1

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..|++.|++++|+..|++++++                .|....+|.+++.+|.+.|++++|+..+++++++
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  436 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTM----------------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL  436 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445677889999999999999999999987                6777789999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .|++..+++.+|.+|...|++++|+..|++++++.|.+..++..++.++...++..+..+
T Consensus       437 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  496 (597)
T 2xpi_A          437 FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN  496 (597)
T ss_dssp             TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999888877766543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.10  E-value=1.4e-09  Score=108.25  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      +.+....+....+.+..+..+|+|++|+..|+++|++....-..        ..|.....+.|+|.+|..+|+|++|+.+
T Consensus       302 v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~--------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~  373 (490)
T 3n71_A          302 VKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFAD--------TNLYVLRLLSIASEVLSYLQAYEEASHY  373 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCT--------TSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCC--------CCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            44556667778888888999999999999999999986433211        1477889999999999999999999999


Q ss_pred             HHHHHhc-----C---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHH---HHHHHHHHHHHHHHHHH
Q psy793          337 CDDILLM-----E---PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPNDQQ---ILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       337 ~~~al~~-----~---p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~~~~---~~~~l~~~~~~~~~~~~  400 (414)
                      ++++|++     .   |+-+..+.++|.+|..+|+|++|+..|++|+++     -|+++.   +...+..++..++.+++
T Consensus       374 ~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~  453 (490)
T 3n71_A          374 ARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQ  453 (490)
T ss_dssp             HHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence            9999976     2   444578999999999999999999999999985     477754   44567777777777666


Q ss_pred             HHH
Q psy793          401 LEK  403 (414)
Q Consensus       401 ~~k  403 (414)
                      .+.
T Consensus       454 ae~  456 (490)
T 3n71_A          454 NEF  456 (490)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.10  E-value=5e-10  Score=83.87  Aligned_cols=84  Identities=26%  Similarity=0.353  Sum_probs=78.1

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..++|++|+..|++++++                .|....++.++|.++.+++++++|+..++++++
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----------------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc----------------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3667889999999999999999999999998                666778999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcC
Q psy793          343 MEPNNVKALFRRGRAQVSMN  362 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg  362 (414)
                      ++|++..+++.+|.++..+|
T Consensus        72 ~~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           72 LDPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             HCTTCHHHHHHHHHHHHHHC
T ss_pred             cCCCCHHHHHHHHHHHHhcC
Confidence            99999999999999998764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.10  E-value=9e-10  Score=101.74  Aligned_cols=133  Identities=18%  Similarity=0.154  Sum_probs=113.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|++++|+..|.+++.+......        ...+....++.++|.++..++++++|+.++++++.
T Consensus       110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  181 (311)
T 3nf1_A          110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLG--------KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALE  181 (311)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4667889999999999999999999999998432200        01367788999999999999999999999999999


Q ss_pred             c--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------------------------------------
Q psy793          343 M--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-------------------------------------  377 (414)
Q Consensus       343 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l-------------------------------------  377 (414)
                      +        +|....+++.+|.++..+|++++|+..|++++++                                     
T Consensus       182 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (311)
T 3nf1_A          182 IYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFG  261 (311)
T ss_dssp             HHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSC
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHH
Confidence            8        6777889999999999999999999999999985                                     


Q ss_pred             ------------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          378 ------------LPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       378 ------------~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                                  .|.+..++..++.++...++..+..+
T Consensus       262 ~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  299 (311)
T 3nf1_A          262 EYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAET  299 (311)
T ss_dssp             CCC---------CHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHH
Confidence                        45667788889999888888766544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.09  E-value=8.1e-10  Score=102.08  Aligned_cols=133  Identities=21%  Similarity=0.170  Sum_probs=113.6

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|++++|+..|.+++.+......        ...+....++.++|.+|..++++++|+..++++++
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  139 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG--------KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  139 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence            4667888999999999999999999999998543200        11367788999999999999999999999999998


Q ss_pred             cC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          343 ME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--------LPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       343 ~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l--------~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +.        |....+++.+|.++..+|++++|+..|++++++        .|....++..++.++...++..+..+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  216 (311)
T 3nf1_A          140 IREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET  216 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            84        566789999999999999999999999999998        77778888999999988887766543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.08  E-value=8.4e-10  Score=109.68  Aligned_cols=113  Identities=16%  Similarity=0.261  Sum_probs=98.6

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHH------HHHHHHHHHHHHH---hhCHHHHHHH
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY------TAALLNMAAVQLK---FKAYKRAINL  336 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~------~~~~~nla~~~~~---l~~~~~A~~~  336 (414)
                      .+...|..+++.|++++|+..|.+++..                .|..      ..++.++|.++..   +|++++|+..
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~  437 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIEL----------------ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNL  437 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHH
Confidence            4566777888888888888888888877                3433      3389999999999   9999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      +++++.++|++..+++.+|.++..+|++++|+..|+++++++|++..++..+..+...
T Consensus       438 ~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  495 (514)
T 2gw1_A          438 LEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAA  495 (514)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998877666543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.07  E-value=6.1e-10  Score=104.27  Aligned_cols=68  Identities=7%  Similarity=0.039  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      ..++.++|.+|.++|+|++|+.++++++.+.|.+      ..+++.+|.++..+|++++|+..|++++ ++|...
T Consensus       155 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          155 AELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            4566666666666666666666666666654432      2355666666666666666666666666 666664

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.07  E-value=4.3e-10  Score=97.99  Aligned_cols=114  Identities=8%  Similarity=0.006  Sum_probs=94.6

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH-----
Q psy793          274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV-----  348 (414)
Q Consensus       274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~-----  348 (414)
                      .-..+.|+.|.+.|......                .+.....+.++|.++++.++|++|+..+++++.+.|.++     
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~   77 (198)
T 2fbn_A           14 RENLYFQGAKKSIYDYTDEE----------------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQ   77 (198)
T ss_dssp             --------CCCSGGGCCHHH----------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCH
T ss_pred             hhhhhhccccCchhhCCHHH----------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchh
Confidence            33446666666666655544                566778899999999999999999999999999999887     


Q ss_pred             -----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          349 -----------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       349 -----------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                                 .+++++|.++..+|+|++|+.+|+++++++|++..++..++.++..+++..+..+
T Consensus        78 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~  143 (198)
T 2fbn_A           78 ILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKE  143 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHH
Confidence                       8999999999999999999999999999999999999999999998888766543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.07  E-value=5.4e-10  Score=103.77  Aligned_cols=125  Identities=14%  Similarity=0.043  Sum_probs=102.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..++|++|+.+|++|+.+.....   .       ......++.++|.+|..+|+|++|+.++++++++
T Consensus       115 ~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~---~-------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI---D-------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS---C-------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc---c-------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45566789999999999999999999998522111   0       1234568999999999999999999999999953


Q ss_pred             -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHH
Q psy793          344 -------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHH  398 (414)
Q Consensus       344 -------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~  398 (414)
                             .+....+++++|.+|..+|+|++|+..+++++++.+..      ..++..++.++..+++.
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~  252 (293)
T 3u3w_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYE  252 (293)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCC
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCc
Confidence                   23345689999999999999999999999999987544      78899999999988843

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.06  E-value=2.8e-09  Score=102.51  Aligned_cols=108  Identities=15%  Similarity=0.116  Sum_probs=97.0

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..+...|+|++|+.+|.+|+++.+...          .......++.|+|.+|..+|++++|+.++++++
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  249 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQ----------NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAA  249 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4577888999999999999999999999999864332          134567899999999999999999999999999


Q ss_pred             h-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          342 L-----MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       342 ~-----~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      .     .+|..+.+++.+|.++..+|++++|+..+++++++.+
T Consensus       250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9     7888899999999999999999999999999999854

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.06  E-value=2.3e-09  Score=103.18  Aligned_cols=107  Identities=12%  Similarity=0.164  Sum_probs=95.9

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..+...|+|++|+.+|.+|+++.+...          ..+....++.|+|.+|..+|++++|+.++++++
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEK----------QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcC----------ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4567889999999999999999999999999965432          145667899999999999999999999999999


Q ss_pred             h-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          342 L-----ME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       342 ~-----~~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      +     .+ |..+.+++.+|.++..+|++++|+..|++++++.
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  294 (383)
T 3ulq_A          252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS  294 (383)
T ss_dssp             HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            9     46 7788999999999999999999999999999984

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.05  E-value=1.4e-09  Score=83.10  Aligned_cols=70  Identities=13%  Similarity=0.099  Sum_probs=60.2

Q ss_pred             HHHhhHHHHHH-HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          305 QQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       305 ~~~~~~~~~~~-~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      ......|.... +++++|.+|..++++++|+.+++++++++|++..++++        +.+.+|+..|+++...+|++.
T Consensus        25 ~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           25 EFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            34445566778 99999999999999999999999999999999998865        677889999999988888763

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.05  E-value=8.1e-10  Score=92.90  Aligned_cols=92  Identities=16%  Similarity=0.137  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLM------------------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQ  373 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~------------------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~  373 (414)
                      ..+..+.++|..+++.|+|++|+..|+++|.+                  +|.+..+|+++|.||..+|+|++|+.++++
T Consensus         9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~   88 (162)
T 3rkv_A            9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence            45678899999999999999999999999999                  777889999999999999999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          374 ALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       374 al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +++++|++..++..++.++..+++..+...
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~  118 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEE  118 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHH
Confidence            999999999999999999999888877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.05  E-value=1.6e-09  Score=104.29  Aligned_cols=133  Identities=10%  Similarity=0.080  Sum_probs=113.8

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..+...|..++..|++..|+.+|.+|+++.+....         ..+....++.++|.+|..+|+|++|+.++++|
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a  208 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPL---------YSIRTIQSLFVIAGNYDDFKHYDKALPHLEAA  208 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTT---------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCC---------chhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345788999999999999999999999999998654331         13456789999999999999999999999999


Q ss_pred             HhcCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          341 LLMEP------NNVKALFRRGRAQVSMNNFEQGLQDYEQALD-----LLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       341 l~~~p------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~-----l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +++.+      ....+++++|.+|..+|++++|+..|+++++     .+|....+...++.++..+++..+..
T Consensus       209 l~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  281 (378)
T 3q15_A          209 LELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAF  281 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHH
Confidence            98743      1346899999999999999999999999999     77888889999999998888776654

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.05  E-value=1.6e-09  Score=93.81  Aligned_cols=130  Identities=13%  Similarity=0.134  Sum_probs=106.5

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|++|+..|.+|+.+.....          ..+....++.++|.++..+|++++|+.++++++.
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   94 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSG----------DHTAEHRALHQVGMVERMAGNWDAARRCFLEERE   94 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            367788999999999999999999999999865432          1567788999999999999999999999999998


Q ss_pred             c---CC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCH----HHHHHHHHHHHHHHHHHHHH
Q psy793          343 M---EP----NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP--NDQ----QILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       343 ~---~p----~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P--~~~----~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +   .+    ....+++.+|.++..+|++++|+..+++++++.+  ++.    .+...++.++...++..+..
T Consensus        95 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  167 (203)
T 3gw4_A           95 LLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ  167 (203)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHH
Confidence            8   34    2356799999999999999999999999998743  222    33467777777766665543

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.04  E-value=1.6e-09  Score=110.24  Aligned_cols=139  Identities=16%  Similarity=0.133  Sum_probs=97.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------Cc-------HHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------QS-------KTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------~~-------~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      ...+...|..+.+.|++++|+..|++++...+.....           ..       ..+.....|....+|.+++.+|.
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  486 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF  486 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            4567778888888888888888888877653211100           00       01111123344567888888888


Q ss_pred             HhhCHHHHHHHHHHHHhc------CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          326 KFKAYKRAINLCDDILLM------EPNN-VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~------~p~~-~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      +.|++++|+..+++++++      +|++ ..+|+.+|.++..+|++++|+..|+++++++|++..++..++.++...++.
T Consensus       487 ~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  566 (597)
T 2xpi_A          487 NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIP  566 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCH
Confidence            888888888888888877      5554 677888888888888888888888888888888888888888887777766


Q ss_pred             HHHH
Q psy793          399 LNLE  402 (414)
Q Consensus       399 ~~~~  402 (414)
                      .+..
T Consensus       567 ~~A~  570 (597)
T 2xpi_A          567 GLAI  570 (597)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.04  E-value=5.4e-10  Score=92.17  Aligned_cols=104  Identities=14%  Similarity=0.218  Sum_probs=89.2

Q ss_pred             cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh---CHHHHHHHHHHHHhcC-C-CCHHHHH
Q psy793          278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK---AYKRAINLCDDILLME-P-NNVKALF  352 (414)
Q Consensus       278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~---~~~~A~~~~~~al~~~-p-~~~~a~~  352 (414)
                      .....+.+.|.+++..                .+....+.+++|+|+.+.+   +.++++..++.+++.+ | ++..++|
T Consensus        12 ~~l~~~~~~y~~e~~~----------------~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY   75 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAA----------------GSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVF   75 (152)
T ss_dssp             HHHHHHHHHHHHHHHT----------------TCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcc----------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHH
Confidence            3445566677777654                4556788999999999988   7889999999999998 7 5789999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      .+|.+++++++|++|+++++++++++|+|..+......+..++.+
T Consensus        76 ~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           76 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988888776643

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.04  E-value=1.5e-10  Score=89.76  Aligned_cols=92  Identities=13%  Similarity=0.302  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--DQQILKEIA  389 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--~~~~~~~l~  389 (414)
                      ....++.++|.++...+++++|+..++++++++|.+..+++.+|.++..+|++++|+..|+++++++|+  +..++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999999  999999999


Q ss_pred             HHHHHH-HHHHHHHH
Q psy793          390 FVRKQM-RHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~-~~~~~~~k  403 (414)
                      .++..+ ++..+..+
T Consensus        84 ~~~~~~~~~~~~A~~   98 (112)
T 2kck_A           84 DALRYIEGKEVEAEI   98 (112)
T ss_dssp             HHHTTCSSCSHHHHH
T ss_pred             HHHHHHhCCHHHHHH
Confidence            999888 76655443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.03  E-value=2.6e-09  Score=99.97  Aligned_cols=131  Identities=12%  Similarity=0.098  Sum_probs=108.5

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..+.+.|+.+.+.|+|++|+.+|++|+.+......          ......++.++|.+|.. +++++|+.++++|
T Consensus        73 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~----------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A  141 (307)
T 2ifu_A           73 FHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT----------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQA  141 (307)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC----------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence            366888999999999999999999999999999876661          23457889999999999 9999999999999


Q ss_pred             HhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHHHHHHHHH
Q psy793          341 LLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ------QILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       341 l~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~------~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +.+.+..      ..++.++|.++..+|+|++|+..|++++++.|.+.      .+...+..++..+++..+..
T Consensus       142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9987643      68899999999999999999999999999876542      34555556665555554443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.03  E-value=1.4e-09  Score=87.21  Aligned_cols=94  Identities=15%  Similarity=0.171  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .+.....+.++|.++...++|++|+..++++++.+|.+..+++.+|.++..++++++|+..|+++++++|++..++..++
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la   91 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKA   91 (133)
T ss_dssp             SSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            35667889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~~~~~~~~k  403 (414)
                      .++..+++..+..+
T Consensus        92 ~~~~~~~~~~~A~~  105 (133)
T 2lni_A           92 AALEAMKDYTKAMD  105 (133)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHHhhHHHHHH
Confidence            99988877766543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.02  E-value=1.5e-09  Score=90.64  Aligned_cols=98  Identities=14%  Similarity=0.222  Sum_probs=87.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|.+++.+                .|....++.++|.++..+|++++|+..+++++++
T Consensus        47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----------------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           47 AIYYGNRSLAYLRTECYGYALGDATRAIEL----------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            455788999999999999999999999998                6777889999999999999999999999999999


Q ss_pred             CCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          344 EPNNVKALFR--RGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       344 ~p~~~~a~~~--~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      +|.+..++..  ++..+..+|++++|+..++++..+
T Consensus       111 ~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~  146 (166)
T 1a17_A          111 KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSV  146 (166)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence            9999988855  455588899999999999988765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.02  E-value=3.5e-09  Score=82.60  Aligned_cols=90  Identities=13%  Similarity=0.168  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      +..+.++|.++...++|++|+..+++++..+|.++.+++.+|.++..+|++++|+..++++++++|++..++..++.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q psy793          394 QMRHHLNLEK  403 (414)
Q Consensus       394 ~~~~~~~~~k  403 (414)
                      ..++..+..+
T Consensus        84 ~~~~~~~A~~   93 (118)
T 1elw_A           84 FLNRFEEAKR   93 (118)
T ss_dssp             HTTCHHHHHH
T ss_pred             HHhhHHHHHH
Confidence            8877666543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.02  E-value=2e-09  Score=99.86  Aligned_cols=129  Identities=12%  Similarity=0.013  Sum_probs=103.6

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL-  341 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al-  341 (414)
                      .+..+...|..+...|+|++|+.+|.+|+.+......          ......++.++|.+|..+++|++|+.++++|+ 
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~  183 (293)
T 2qfc_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID----------VYQNLYIENAIANIYAENGYLKKGIDLFEQILK  183 (293)
T ss_dssp             HHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSC----------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCc----------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455667888999999999999999999976322110          12346789999999999999999999999999 


Q ss_pred             --hcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHHHHHHHH
Q psy793          342 --LMEPNNV----KALFRRGRAQVSMNNFEQGLQDYEQALDLLPN------DQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       342 --~~~p~~~----~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~------~~~~~~~l~~~~~~~~~~~~~  401 (414)
                        +..|++.    .+++++|.+|..+|+|++|+..|++++++.+.      -..+...++.++..+++..+.
T Consensus       184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence              4455532    69999999999999999999999999998643      167788888888887766554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.02  E-value=1.2e-09  Score=105.58  Aligned_cols=125  Identities=12%  Similarity=0.119  Sum_probs=109.3

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..+...|..++..|+|++|+..|++++++.+. .           ......++.++|.+|..+|++++|+.+++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE-D-----------LRTLSAIYSQLGNAYFYLGDYNKAMQYHKHD  112 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-C-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-C-----------hhHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            355778889999999999999999999999998211 1           2334578999999999999999999999999


Q ss_pred             Hhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHHHH
Q psy793          341 LLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL------LPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       341 l~~------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l------~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +++      +|....+++.+|.++..+|++++|+..|++++++      .|....++..++.++...++
T Consensus       113 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          113 LTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            988      5777899999999999999999999999999999      56667788899999988888

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.00  E-value=4.4e-09  Score=83.59  Aligned_cols=94  Identities=17%  Similarity=0.282  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .+....++..+|.++...+++++|+..+++++..+|++..+++.+|.++..+|++++|+..|+++++++|++..++..++
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   87 (131)
T 2vyi_A            8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHH
Confidence            67788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy793          390 FVRKQMRHHLNLEK  403 (414)
Q Consensus       390 ~~~~~~~~~~~~~k  403 (414)
                      .++...++..+..+
T Consensus        88 ~~~~~~~~~~~A~~  101 (131)
T 2vyi_A           88 LALSSLNKHVEAVA  101 (131)
T ss_dssp             HHHHHTTCHHHHHH
T ss_pred             HHHHHhCCHHHHHH
Confidence            99988877766543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.00  E-value=2.1e-09  Score=99.74  Aligned_cols=107  Identities=9%  Similarity=0.122  Sum_probs=90.8

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..|+..|+|++|+.+|++|+.+.......         ......+++|+|.+|.++|+|++|+.+++++++
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~---------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~  224 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN---------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIE  224 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc---------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHH
Confidence            36788999999999999999999999999885543210         122347999999999999999999999999998


Q ss_pred             cCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHhhC
Q psy793          343 MEPN------NVKALFRRGRAQVSMNNFEQG-LQDYEQALDLL  378 (414)
Q Consensus       343 ~~p~------~~~a~~~~g~~~~~lg~~~~A-~~~~~~al~l~  378 (414)
                      +.+.      .+.+|+++|.+|..+|++++| ...|++|+.+.
T Consensus       225 ~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          225 ISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            8542      278999999999999999999 77899999764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.99  E-value=5e-09  Score=100.56  Aligned_cols=130  Identities=13%  Similarity=0.148  Sum_probs=108.4

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|+|++|+..|++++.+.+...          ..+....++.++|.+|..+|++++|+.++++++.
T Consensus       186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG----------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            355678899999999999999999999999865433          1345567899999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       343 ~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +.+..      ..+++.+|.++..+|++++|+..|++++++.+..      ..++..++.++...++..+..
T Consensus       256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            87655      7789999999999999999999999999986543      567778888887777665543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.99  E-value=1.9e-09  Score=100.81  Aligned_cols=119  Identities=3%  Similarity=-0.063  Sum_probs=86.7

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHH-HHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTA-ALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~-~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ..+...|..+.+.|++++|...|++|+++                .|.... +|.+++.++.++|++++|+..+++|++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          100 LLYFAYADYEESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTS----------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----------------cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            45677888888889999999999999986                333333 6777777777777788887777777777


Q ss_pred             CCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVS-MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      +|.+..+|...+..... +|++++|+..|+++++++|++..++..++.++...++..
T Consensus       164 ~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~  220 (308)
T 2ond_A          164 ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN  220 (308)
T ss_dssp             TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            77777776655555433 577777777777777777777777777776665554443

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.99  E-value=4.1e-09  Score=84.37  Aligned_cols=89  Identities=20%  Similarity=0.258  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC---HHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV---KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND---QQILKEI  388 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~---~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~---~~~~~~l  388 (414)
                      ..++++|.+++..|+|++|+..++++++.+|++.   .+++.+|.++..+|++++|+..|+++++.+|++   ..++..+
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l   82 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL   82 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence            3568899999999999999999999999999998   899999999999999999999999999999999   8899999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy793          389 AFVRKQMRHHLNLEK  403 (414)
Q Consensus       389 ~~~~~~~~~~~~~~k  403 (414)
                      +.++..+++..+..+
T Consensus        83 a~~~~~~g~~~~A~~   97 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQ   97 (129)
T ss_dssp             HHHHHHTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHH
Confidence            999988877766543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.97  E-value=7.4e-09  Score=85.39  Aligned_cols=108  Identities=19%  Similarity=0.261  Sum_probs=92.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|++++|+..|++++.+.+...          ..+....++.++|.++..++++++|+.++++++.
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  117 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK----------DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  117 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----------CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            356788899999999999999999999999865432          1344577899999999999999999999999997


Q ss_pred             cCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q psy793          343 MEP------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN  380 (414)
Q Consensus       343 ~~p------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~  380 (414)
                      +.+      ....+++.+|.++..+|++++|+..+++++++...
T Consensus       118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            732      22568999999999999999999999999987543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.97  E-value=7.3e-09  Score=94.62  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=60.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDD  339 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~  339 (414)
                      +..+...|..++..+++++|+..|++|++.                  ....+++++|.+|..    .+++++|+.++++
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~------------------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~   67 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL------------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK   67 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHH
Confidence            456777888888888888888888887752                  112344455555555    5555555555555


Q ss_pred             HHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          340 ILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      +++++  ++.+++.+|.++..    .+++++|+..|+++++.+  +..+...++.++..
T Consensus        68 a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           68 ACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            55443  44455555555555    555555555555555442  44444444444443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.96  E-value=7.2e-09  Score=105.39  Aligned_cols=116  Identities=9%  Similarity=0.025  Sum_probs=108.8

Q ss_pred             HHHHHHhhhHHhhhcC----------HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh--CHH
Q psy793          264 IRTIKNSGNEYFKLNR----------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK--AYK  331 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~----------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~  331 (414)
                      ...+..++..+.+.++          +++|+..|.++++.                +|....+|..+++++.+++  +|+
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----------------~pK~y~aW~hR~w~l~~l~~~~~~  126 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----------------NPKSYGTWHHRCWLLSRLPEPNWA  126 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcccccHH
Confidence            3456678888888888          99999999999998                8999999999999999999  779


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          332 RAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       332 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +|+++|+++++++|.|..||+.++.++..++ .+++|++++.++++.+|.|..++..++.+...+
T Consensus       127 ~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          127 RELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9999999999999999999999999999999 999999999999999999999999999998876

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.95  E-value=2.7e-09  Score=105.30  Aligned_cols=124  Identities=19%  Similarity=0.146  Sum_probs=100.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh--CHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK--AYKRAINLCDDIL  341 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~--~~~~A~~~~~~al  341 (414)
                      +..+.+.|..|+..|+|++|+.+|++++.+.+......        .+....++.++|.++++++  +|++|+.++++|+
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal  165 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY--------RIESPELDCEEGWTRLKCGGNQNERAKVCFEKAL  165 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS--------CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc--------chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence            45678899999999999999999999999855433110        1233567888888887764  6999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVS---MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~---lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +++|+++.+++.+|.++..   .+++++|+..|+++++++|++..++..++.....+
T Consensus       166 ~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~  222 (472)
T 4g1t_A          166 EKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM  222 (472)
T ss_dssp             HHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHC
T ss_pred             HhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHH
Confidence            9999999999999988654   46778899999999999999999888887665544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.94  E-value=9.5e-09  Score=95.35  Aligned_cols=130  Identities=13%  Similarity=0.154  Sum_probs=109.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|++++|+..|++++.+.+...          ..+....++.++|.++..+|++++|+..+++++.+
T Consensus       183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  252 (338)
T 3ro2_A          183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG----------DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL  252 (338)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC----------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999855432          13455679999999999999999999999999988


Q ss_pred             CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .+..      ..+++.+|.++..+|++++|+..|++++++.+..      ..++..++.++...++..+..+
T Consensus       253 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          253 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            7655      7789999999999999999999999999986543      4477788888888777666543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.94  E-value=6.7e-09  Score=97.10  Aligned_cols=111  Identities=10%  Similarity=0.118  Sum_probs=95.0

Q ss_pred             HHHHHhhhHHh-------hhcCH-------HHHHHHHHHHHH-HHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793          265 RTIKNSGNEYF-------KLNRM-------HDAQRKYKKAVR-YIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA  329 (414)
Q Consensus       265 ~~~~~~G~~~~-------~~~~~-------~~A~~~y~~Al~-~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~  329 (414)
                      ..+...|..+.       +.|++       ++|+..|++|++ +                .|....+|.++|.++.++|+
T Consensus        51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~----------------~p~~~~~~~~~~~~~~~~~~  114 (308)
T 2ond_A           51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL----------------LKKNMLLYFAYADYEESRMK  114 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT----------------TTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh----------------CcccHHHHHHHHHHHHhcCC
Confidence            34555565554       34664       999999999998 6                67778899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          330 YKRAINLCDDILLMEPNNVK-ALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       330 ~~~A~~~~~~al~~~p~~~~-a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      +++|...|+++++++|.++. +|..+|.++..+|++++|+..|++|++++|.+..++...+.+
T Consensus       115 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A          115 YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            99999999999999999987 999999999999999999999999999999887766544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.94  E-value=9.2e-09  Score=104.59  Aligned_cols=126  Identities=10%  Similarity=0.040  Sum_probs=108.1

Q ss_pred             HHhhhHHhhhcCH-HHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC----------HHHHHHH
Q psy793          268 KNSGNEYFKLNRM-HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINL  336 (414)
Q Consensus       268 ~~~G~~~~~~~~~-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~  336 (414)
                      ........+.+.+ ++|+..|.++|.+                .|....+|+.++.++.++++          +++|+.+
T Consensus        32 ~~~~~~~~~~~~~~eeal~~~~~~l~~----------------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~   95 (567)
T 1dce_A           32 TQAVFQKRQAGELDESVLELTSQILGA----------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGF   95 (567)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHH
Confidence            3334444555655 6889999999999                89999999999999999999          9999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      ++++|+.+|++..+|+.|+.++..++  +|++|++.+.++++++|.|..++...+.+...++...+.+-+.+.++
T Consensus        96 ~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~  170 (567)
T 1dce_A           96 LESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL  170 (567)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            99999999999999999999999999  78999999999999999999999999999888773334444444443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.93  E-value=1.1e-08  Score=83.55  Aligned_cols=93  Identities=10%  Similarity=0.083  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  387 (414)
                      +.....+..+|.+++..++|++|+..++++++++|++   ..+++.+|.++..++++++|+..|+++++++|++..++..
T Consensus        25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            4456778899999999999999999999999999988   8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy793          388 IAFVRKQMRHHLNLEK  403 (414)
Q Consensus       388 l~~~~~~~~~~~~~~k  403 (414)
                      ++.++..+++..+..+
T Consensus       105 ~a~~~~~~~~~~~A~~  120 (148)
T 2dba_A          105 RSQALEKLGRLDQAVL  120 (148)
T ss_dssp             HHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHH
Confidence            9999998887766543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.93  E-value=3.7e-09  Score=98.20  Aligned_cols=122  Identities=14%  Similarity=0.144  Sum_probs=103.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|++|+..|+++++..+. .           ......++.++|.++..+|++++|+..+++++.+
T Consensus         5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-D-----------LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-C-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcc-c-----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            567888999999999999999999999997211 1           2344678999999999999999999999999987


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHH
Q psy793          344 ------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRH  397 (414)
Q Consensus       344 ------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~  397 (414)
                            .+....+++.+|.++..+|++++|+..|++++++.|..      ..+...++.++...++
T Consensus        73 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           73 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                  45567899999999999999999999999999986643      3377888888887777

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.93  E-value=6.3e-10  Score=105.85  Aligned_cols=103  Identities=10%  Similarity=0.017  Sum_probs=58.6

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+.++|..+++.++|++|+.+|++||++                +|....+|+++|.+|..+++|++|+.+++++++++|
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p  295 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTE----------------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP  295 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence            6788999999999999999999999999                788889999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCHHH
Q psy793          346 NNVKALFRRGRAQ-VSMNNFEQGLQDYEQALDLLPNDQQI  384 (414)
Q Consensus       346 ~~~~a~~~~g~~~-~~lg~~~~A~~~~~~al~l~P~~~~~  384 (414)
                      ++..++..++.+. ...+..+++...|++++...|+++..
T Consensus       296 ~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~~  335 (338)
T 2if4_A          296 DDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGAK  335 (338)
T ss_dssp             ----------------------------------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCC
Confidence            9999999999984 45577889999999999999987643

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.92  E-value=6.7e-09  Score=99.68  Aligned_cols=130  Identities=17%  Similarity=0.183  Sum_probs=110.1

Q ss_pred             HHHHHHHhhhHHhhhcC--------------------HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHH
Q psy793          263 VIRTIKNSGNEYFKLNR--------------------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAA  322 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~--------------------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~  322 (414)
                      .+..+...|..++..|+                    |++|+..|.+++.+.....          ..+....++.++|.
T Consensus       126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~la~  195 (406)
T 3sf4_A          126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALG----------DRAAQGRAFGNLGN  195 (406)
T ss_dssp             HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhcc----------CcHHHHHHHHHHHH
Confidence            46678899999999999                    9999999999999855432          24667789999999


Q ss_pred             HHHHhhCHHHHHHHHHHHHhcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHH
Q psy793          323 VQLKFKAYKRAINLCDDILLMEPNNV------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAF  390 (414)
Q Consensus       323 ~~~~l~~~~~A~~~~~~al~~~p~~~------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~  390 (414)
                      +|..+|++++|+.++++++++.+...      .+++.+|.++..+|++++|+..|++++++.|..      ..++..++.
T Consensus       196 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  275 (406)
T 3sf4_A          196 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN  275 (406)
T ss_dssp             HHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHH
Confidence            99999999999999999998866543      389999999999999999999999999987765      667778888


Q ss_pred             HHHHHHHHHHHH
Q psy793          391 VRKQMRHHLNLE  402 (414)
Q Consensus       391 ~~~~~~~~~~~~  402 (414)
                      ++...++..+..
T Consensus       276 ~~~~~g~~~~A~  287 (406)
T 3sf4_A          276 TYTLLQDYEKAI  287 (406)
T ss_dssp             HHHHTTCHHHHH
T ss_pred             HHHHhCcHHHHH
Confidence            887777665543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.92  E-value=1.8e-08  Score=98.74  Aligned_cols=124  Identities=11%  Similarity=0.086  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      +....+....+.+...-..|+|++|+..|+++|++....-..        ..|.....+.|+|.+|..+|+|++|+.+++
T Consensus       293 ~~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~--------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  364 (433)
T 3qww_A          293 DMVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFED--------SNVYMLHMMYQAMGVCLYMQDWEGALKYGQ  364 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCT--------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccCh--------hchHHHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            333445555666666667789999999999999986433211        147778899999999999999999999999


Q ss_pred             HHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHH
Q psy793          339 DILLM--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPNDQQILKEIAF  390 (414)
Q Consensus       339 ~al~~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~~~~~~~~l~~  390 (414)
                      ++|++        .|+-+..++++|.+|..+|+|++|+..|++|+++     -|+++.+......
T Consensus       365 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          365 KIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             HHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence            99976        3444678999999999999999999999999985     5888877665443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.91  E-value=6e-09  Score=100.70  Aligned_cols=130  Identities=16%  Similarity=0.173  Sum_probs=101.7

Q ss_pred             HHHHHHHHhhhHHhhhcC-----------------HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNR-----------------MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ  324 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~-----------------~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  324 (414)
                      ..+..+...|..+...|+                 |++|+..|.+++++.....          ..+....++.++|.+|
T Consensus       164 ~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~la~~~  233 (411)
T 4a1s_A          164 SEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG----------DRGAQGRACGNLGNTY  233 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT----------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHHH
Confidence            346678889999999999                 9999999999998854332          1355667888899999


Q ss_pred             HHhhCHHHHHHHHHHHHhcCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILLMEPNNVK------ALFRRGRAQVSMNNFEQGLQDYEQALDLLPND------QQILKEIAFVR  392 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~~~p~~~~------a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~  392 (414)
                      ..+|++++|+.++++++++.+....      +++.+|.++..+|++++|+..|++++++.|..      ..++..++.++
T Consensus       234 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~  313 (411)
T 4a1s_A          234 YLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTY  313 (411)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            9999999999999998888664433      78888889999999999999999888887643      56667777777


Q ss_pred             HHHHHHHHH
Q psy793          393 KQMRHHLNL  401 (414)
Q Consensus       393 ~~~~~~~~~  401 (414)
                      ...++..+.
T Consensus       314 ~~~g~~~~A  322 (411)
T 4a1s_A          314 TLLHEFNTA  322 (411)
T ss_dssp             HHTTCHHHH
T ss_pred             HHcCCHHHH
Confidence            666655544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.91  E-value=4.2e-09  Score=97.33  Aligned_cols=90  Identities=16%  Similarity=0.066  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ...+.++|.++++.|+|++|+..++++++++|+++.+++++|.++..+|++++|+.+|+++++++|++..++..++.++.
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy793          394 QMRHHLNLEK  403 (414)
Q Consensus       394 ~~~~~~~~~k  403 (414)
                      .+++..+..+
T Consensus        84 ~~g~~~~A~~   93 (281)
T 2c2l_A           84 EMESYDEAIA   93 (281)
T ss_dssp             HTTCHHHHHH
T ss_pred             HcCCHHHHHH
Confidence            8887776544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.90  E-value=5.9e-10  Score=111.20  Aligned_cols=102  Identities=14%  Similarity=0.219  Sum_probs=90.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+..+|..+++.|+|++|+..|++|+++                .|....+++++|.+|.+++++++|+.++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----------------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~  103 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIEL----------------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKV  103 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            566788999999999999999999999998                7788899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHH--HHHcCCHHHHHHHHH-----------HHHhhCCCC
Q psy793          344 EPNNVKALFRRGRA--QVSMNNFEQGLQDYE-----------QALDLLPND  381 (414)
Q Consensus       344 ~p~~~~a~~~~g~~--~~~lg~~~~A~~~~~-----------~al~l~P~~  381 (414)
                      +|++..++..++.+  +..+|++++|++.++           ++++++|+.
T Consensus       104 ~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          104 KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             STTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            99999999999998  889999999999999           888888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.90  E-value=7.1e-09  Score=82.46  Aligned_cols=91  Identities=10%  Similarity=0.103  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-------HHHH
Q psy793          313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-------QQIL  385 (414)
Q Consensus       313 ~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~-------~~~~  385 (414)
                      ....+.++|.++...++|++|+..+++++.++|.++.+++.+|.++..+|++++|+..|++++++.|++       ..++
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            456789999999999999999999999999999999999999999999999999999999999999877       8889


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy793          386 KEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       386 ~~l~~~~~~~~~~~~~~k  403 (414)
                      ..++.++...++..+..+
T Consensus        83 ~~la~~~~~~~~~~~A~~  100 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIH  100 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHH
Confidence            999999888777665543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.90  E-value=1.8e-08  Score=79.22  Aligned_cols=89  Identities=21%  Similarity=0.340  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ..++.++|.++...+++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|.+..++..++.++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q psy793          394 QMRHHLNLE  402 (414)
Q Consensus       394 ~~~~~~~~~  402 (414)
                      ..++..+..
T Consensus        89 ~~~~~~~A~   97 (125)
T 1na0_A           89 KQGDYDEAI   97 (125)
T ss_dssp             HTTCHHHHH
T ss_pred             HhcCHHHHH
Confidence            877665543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.90  E-value=1.8e-08  Score=91.93  Aligned_cols=108  Identities=14%  Similarity=0.171  Sum_probs=66.9

Q ss_pred             HHHHHhhhHHhh----hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHH
Q psy793          265 RTIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINL  336 (414)
Q Consensus       265 ~~~~~~G~~~~~----~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~  336 (414)
                      ..+...|..+..    .+++++|+..|++|++.                .  ...+++++|.+|..    .+++++|+.+
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----------------~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~  100 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL----------------N--YSNGCHLLGNLYYSGQGVSQNTNKALQY  100 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----------------T--CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----------------C--CHHHHHHHHHHHhCCCCcccCHHHHHHH
Confidence            456677888888    88888888888888765                1  34455566666666    6666666666


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      ++++++.+  ++.+++.+|.+|..    .+++++|+..|+++++++  +..+...++.++..
T Consensus       101 ~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  158 (273)
T 1ouv_A          101 YSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDA  158 (273)
T ss_dssp             HHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHc
Confidence            66665552  55566666666665    566666666666666554  34455555555443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.89  E-value=1e-08  Score=93.96  Aligned_cols=108  Identities=12%  Similarity=0.019  Sum_probs=92.8

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH-HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY-YTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+..|..+++.++|++|+.+|++++..-               ++. ...+++++|.++..+|++++|+..+++++...
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~---------------d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~  201 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWP---------------DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP  201 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCS---------------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccC---------------CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC
Confidence            57889999999999999999998776540               122 34689999999999999999999999999655


Q ss_pred             --CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          345 --PN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       345 --p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                        |. ...+++++|.|+..+|+.++|...|++++..+|+ ..+...|.
T Consensus       202 ~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          202 AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence              55 6679999999999999999999999999999999 77776654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.89  E-value=1.1e-08  Score=90.41  Aligned_cols=130  Identities=13%  Similarity=0.024  Sum_probs=94.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHH---------hhccC---CcHHHHHh-----hHHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK---------WYNQS---QSKTQQKH-----FRSYYTAALLNMAAVQLK  326 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~---------~~~~~---~~~~~~~~-----~~~~~~~~~~nla~~~~~  326 (414)
                      +..+...|..++..+++++|+..|++|++.-.         .+...   .+.++...     ..+....+++++|.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            45567777777777777777777777765310         00000   01111111     133456788899999988


Q ss_pred             ----hhCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          327 ----FKAYKRAINLCDDILLMEP--NNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       327 ----l~~~~~A~~~~~~al~~~p--~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                          .+++++|+.+++++++..+  .++.+++++|.+|..    .+++++|+..|++++++ |++..+...|+.++..
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence                8899999999999999887  358899999999998    88999999999999998 6777788888888764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.86  E-value=8.3e-09  Score=96.40  Aligned_cols=126  Identities=6%  Similarity=-0.056  Sum_probs=109.5

Q ss_pred             HHHhhhHH----hhh---cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHH--HHHHHH
Q psy793          267 IKNSGNEY----FKL---NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK--RAINLC  337 (414)
Q Consensus       267 ~~~~G~~~----~~~---~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~--~A~~~~  337 (414)
                      +..++..+    .+.   +++++++..+.++++.                +|....+|..++.++.+++.++  ++++++
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~----------------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~  169 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSS----------------DPKNHHVWSYRKWLVDTFDLHNDAKELSFV  169 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence            44455555    444   7899999999999999                8999999999999999999999  999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy793          338 DDILLMEPNNVKALFRRGRAQVSMNN------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYAR  408 (414)
Q Consensus       338 ~~al~~~p~~~~a~~~~g~~~~~lg~------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~  408 (414)
                      +++|+.+|.|..||..++.++..++.      ++++++.+++++.++|+|.+++..+..+....++..+.-+..+.+
T Consensus       170 ~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~  246 (306)
T 3dra_A          170 DKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQ  246 (306)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHT
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            99999999999999999999999998      999999999999999999999999999988776544433333333

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.84  E-value=8.3e-09  Score=91.09  Aligned_cols=110  Identities=12%  Similarity=0.106  Sum_probs=87.8

Q ss_pred             hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHhcCCC
Q psy793          271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK----AYKRAINLCDDILLMEPN  346 (414)
Q Consensus       271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~----~~~~A~~~~~~al~~~p~  346 (414)
                      ...++..|..-.....+.+|+.++....           ......+++++|.+|.. +    ++++|+.+++++++  +.
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~-----------~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g   83 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAA-----------AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AG   83 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH-----------HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CC
Confidence            3445555555555566777777765433           34457889999999998 7    89999999999965  56


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHH
Q psy793          347 NVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLP--NDQQILKEIAFVRKQ  394 (414)
Q Consensus       347 ~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P--~~~~~~~~l~~~~~~  394 (414)
                      ++.+++++|.+|..    .+++++|+..|+++++..|  +++.+...|+.++..
T Consensus        84 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~  137 (212)
T 3rjv_A           84 SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYAS  137 (212)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHc
Confidence            89999999999998    8999999999999999988  358899999998876

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.82  E-value=1.7e-08  Score=84.05  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=68.0

Q ss_pred             HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          325 LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF----------EQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       325 ~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~----------~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      .+++.|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++..++..++.++..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999999999875          599999999999999999999999999998


Q ss_pred             HH
Q psy793          395 MR  396 (414)
Q Consensus       395 ~~  396 (414)
                      ++
T Consensus        93 lg   94 (158)
T 1zu2_A           93 FA   94 (158)
T ss_dssp             HH
T ss_pred             hc
Confidence            86

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.80  E-value=1.5e-07  Score=88.47  Aligned_cols=100  Identities=9%  Similarity=0.039  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793          280 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YKRAINLCDDILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       280 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~A~~~~~~al~~~p~~~~a~~~~g~~  357 (414)
                      +++++..+.+++..                +|....+|..++.++.+++.  |++++.+|+++|+++|.|..||..++.+
T Consensus        90 l~~EL~~~~~~L~~----------------~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~v  153 (331)
T 3dss_A           90 VKAELGFLESCLRV----------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFV  153 (331)
T ss_dssp             HHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            78899999999988                88999999999999999994  9999999999999999999999999999


Q ss_pred             HHHcCC-HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          358 QVSMNN-FEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       358 ~~~lg~-~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      +..++. +++++.++.++++.+|.|..++..+..+...+
T Consensus       154 l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          154 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            999999 69999999999999999999999999998877

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.80  E-value=3.8e-08  Score=91.93  Aligned_cols=117  Identities=10%  Similarity=-0.021  Sum_probs=105.3

Q ss_pred             HHHHHhhhHHhhhc--CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHH----HHh---hCHHHHHH
Q psy793          265 RTIKNSGNEYFKLN--RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ----LKF---KAYKRAIN  335 (414)
Q Consensus       265 ~~~~~~G~~~~~~~--~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~~l---~~~~~A~~  335 (414)
                      ..+..+|..+...+  ++++|+..+.++|..                .|....+|..++.++    ..+   +++++++.
T Consensus        68 taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----------------nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           68 TIWIYRFNILKNLPNRNLYDELDWCEEIALD----------------NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----------------CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHHH----------------CcccHHHHHHHHHHHHHHHHhccccCCHHHHHH
Confidence            34556788887777  888888888888888                788889999999999    777   78999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          336 LCDDILLMEPNNVKALFRRGRAQVSMNNFE--QGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~--~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      .|+++|+.+|.|..+|+.++.++..++.++  ++++.++++++.+|.|..++.....+...++.
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999  99999999999999999999999988877654

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.80  E-value=4.7e-08  Score=75.92  Aligned_cols=83  Identities=14%  Similarity=0.129  Sum_probs=72.8

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLME-------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      +.-++.+|..+++.++|..|+..+++|++..       +..+..+..+|.|++.+|+++.|+..++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3456789999999999999999999999863       345788999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q psy793          387 EIAFVRKQMR  396 (414)
Q Consensus       387 ~l~~~~~~~~  396 (414)
                      ++..+...+.
T Consensus        85 n~~~~~~~~~   94 (104)
T 2v5f_A           85 NLKYFEYIMA   94 (104)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            8886655443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.79  E-value=1.9e-08  Score=85.74  Aligned_cols=113  Identities=10%  Similarity=-0.070  Sum_probs=91.8

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHH---------------hhccC---CcHHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK---------------WYNQS---QSKTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      +..+...|..+...|++++|+..|++++...+               .....   ..........|....+++++|.++.
T Consensus        40 ~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~  119 (176)
T 2r5s_A           40 GDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYN  119 (176)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56788899999999999999999988765421               00000   0112233345677899999999999


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          326 KFKAYKRAINLCDDILLMEPNN--VKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      .+|++++|+..++++++.+|+.  ..+++.+|.++..+|++++|+..|++++.
T Consensus       120 ~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          120 QVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999976  56999999999999999999999999875

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.79  E-value=6.6e-08  Score=94.80  Aligned_cols=120  Identities=11%  Similarity=0.055  Sum_probs=95.7

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...-..+.++|+|++|+..|+++|++....-.        ...+.....+.|+|.+|..+|+|++|+.+++++|+
T Consensus       286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg--------~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLP--------DINIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCC--------TTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCC--------ccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3455556666778889999999999999976322111        11467889999999999999999999999999996


Q ss_pred             c--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCHHHHHHHHH
Q psy793          343 M--------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL-----LPNDQQILKEIAF  390 (414)
Q Consensus       343 ~--------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l-----~P~~~~~~~~l~~  390 (414)
                      +        .|.-+..++++|.+|..+|++++|+..|++|+++     -|+++.....+..
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~  418 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILL  418 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence            6        2344578999999999999999999999999985     5777766654433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.77  E-value=9.9e-08  Score=90.25  Aligned_cols=110  Identities=7%  Similarity=-0.002  Sum_probs=101.3

Q ss_pred             HhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          274 YFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       274 ~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      ..+....++|+..+.++|.+                +|....+|+.++.++..++ .+++++..++++|..+|++..+|+
T Consensus        64 ~~~~e~se~AL~lt~~~L~~----------------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~  127 (349)
T 3q7a_A           64 AAKEEKSERALELTEIIVRM----------------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWH  127 (349)
T ss_dssp             HHTTCCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHh----------------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHH
Confidence            33444557899999999999                8999999999999999999 599999999999999999999999


Q ss_pred             HHHHHHHHc-C-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          353 RRGRAQVSM-N-NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       353 ~~g~~~~~l-g-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      .|+.++..+ + +++++++.+.++++++|.|..++...+.+...++...
T Consensus       128 hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          128 HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            999999998 8 9999999999999999999999999999998887665

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.76  E-value=8.2e-08  Score=82.85  Aligned_cols=109  Identities=16%  Similarity=0.139  Sum_probs=91.4

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..+...|++++|+..|.+|+++.......         ......++.++|.++..+|++++|+..+++++
T Consensus        64 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED---------PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC---------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            346778899999999999999999999999996533310         23567889999999999999999999999999


Q ss_pred             hcCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          342 LMEP--NN----VKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       342 ~~~p--~~----~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                      .+.+  .+    ..++..+|.++..+|++++|+..+++++++..
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            7632  12    34578999999999999999999999998753

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.76  E-value=2.8e-08  Score=95.62  Aligned_cols=90  Identities=16%  Similarity=0.269  Sum_probs=83.6

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHh----------------cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILL----------------MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~----------------~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      ...+.++|.++++.++|++|+..|++||+                ++|.+..+|+++|.+|..+++|++|+.+|++|+++
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999998                78888999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          378 LPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       378 ~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +|++..++..++.++..+++..+..+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~  328 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALA  328 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHH
Confidence            99999999999999998888776543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.76  E-value=2.1e-08  Score=79.31  Aligned_cols=75  Identities=15%  Similarity=0.154  Sum_probs=69.4

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+...|..++..|+|++|+..|++++++                .|....++.++|.|+.++|++++|+..+++++
T Consensus        25 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   88 (117)
T 3k9i_A           25 DLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ----------------FPNHQALRVFYAMVLYNLGRYEQGVELLLKII   88 (117)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            44678999999999999999999999999999                78888999999999999999999999999999


Q ss_pred             hcCCCCHHHHH
Q psy793          342 LMEPNNVKALF  352 (414)
Q Consensus       342 ~~~p~~~~a~~  352 (414)
                      ...|+++....
T Consensus        89 ~~~p~~~~~~~   99 (117)
T 3k9i_A           89 AETSDDETIQS   99 (117)
T ss_dssp             HHHCCCHHHHH
T ss_pred             HhCCCcHHHHH
Confidence            99999987643

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.73  E-value=7.4e-08  Score=74.80  Aligned_cols=83  Identities=11%  Similarity=0.030  Sum_probs=71.5

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..++..|..+++.++|..|+..|++|+...+....         .......++.++|.|+.++|++++|+..+++++++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~---------~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI---------STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC---------CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            456889999999999999999999999998543210         02345688999999999999999999999999999


Q ss_pred             CCCCHHHHHHHH
Q psy793          344 EPNNVKALFRRG  355 (414)
Q Consensus       344 ~p~~~~a~~~~g  355 (414)
                      +|++..++.+++
T Consensus        76 ~P~~~~~~~n~~   87 (104)
T 2v5f_A           76 DPEHQRANGNLK   87 (104)
T ss_dssp             CTTCHHHHHHHH
T ss_pred             CCCCHHHHhhHH
Confidence            999999988887

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.73  E-value=3.4e-08  Score=90.53  Aligned_cols=126  Identities=13%  Similarity=-0.027  Sum_probs=106.2

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .....+..+...|+|++|.+.|..++..                .|... +++.+|.++++.++|++|+..+++++...+
T Consensus       104 l~LayA~~L~~~g~y~eA~~~l~~~~~~----------------~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d  166 (282)
T 4f3v_A          104 ITMGFAACEAAQGNYADAMEALEAAPVA----------------GSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPD  166 (282)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTSSCCT----------------TCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhc----------------CCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCC
Confidence            3667788999999999999999888875                67777 899999999999999999999999887643


Q ss_pred             CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          346 NN--VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--PN-DQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       346 ~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~--P~-~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      +.  ..+++.+|.++..+|++++|+..|++++.-.  |. ...++..++.++..+++..+... .+.++
T Consensus       167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~-~l~~a  234 (282)
T 4f3v_A          167 KFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA-LLEWL  234 (282)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH-HHHHH
Confidence            22  4589999999999999999999999999655  66 66799999999999998866544 44443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.70  E-value=3.7e-07  Score=87.12  Aligned_cols=129  Identities=9%  Similarity=0.021  Sum_probs=98.1

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+...|..++..|++++|+..|.+|+.+.+....          ......++.++|.++..+|++++|+..+++++.
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~  121 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV----------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQ  121 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc----------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3556778899999999999999999999988554320          223456678899999999999999999999987


Q ss_pred             cC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----HHHHHHHHHHHHHHHHHHHH
Q psy793          343 ME--------PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND-----QQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       343 ~~--------p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~-----~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +.        |....++..+|.++..+|++++|...+++++++.|..     ..+...++.++...++..+.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  193 (373)
T 1hz4_A          122 LINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNA  193 (373)
T ss_dssp             HHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            64        3345677888999999999999999999999887652     34566667766666655444

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.70  E-value=1.2e-07  Score=89.11  Aligned_cols=108  Identities=10%  Similarity=0.077  Sum_probs=98.9

Q ss_pred             HhhhcCHH-HHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHh
Q psy793          274 YFKLNRMH-DAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILL  342 (414)
Q Consensus       274 ~~~~~~~~-~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~~~~al~  342 (414)
                      ..+.|.|. +|+..+.++|.+                +|....+|+.++.++..++.          +++++..++.+|.
T Consensus        39 ~~~~~e~s~eaL~~t~~~L~~----------------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~  102 (331)
T 3dss_A           39 KRQAGELDESVLELTSQILGA----------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR  102 (331)
T ss_dssp             HHHTTCCSHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHH----------------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH
Confidence            34567775 899999999998                89999999999999998887          7999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMN--NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      .+|.+..+|+.++.++..++  .+++++..+.++++++|.|..++...+.+...++.
T Consensus       103 ~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~  159 (331)
T 3dss_A          103 VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAV  159 (331)
T ss_dssp             HCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCc
Confidence            99999999999999999999  49999999999999999999999999999887765

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.68  E-value=6.3e-08  Score=73.57  Aligned_cols=73  Identities=16%  Similarity=0.140  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHHHhhC---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          311 SYYTAALLNMAAVQLKFKA---YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~---~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      |....++..+|.+++..++   .++|...+++||+++|+++.+++.+|..++..|+|++|+..|+++++.+|.++.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            4456788899999976666   799999999999999999999999999999999999999999999999998544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.67  E-value=4.5e-08  Score=75.23  Aligned_cols=81  Identities=14%  Similarity=0.103  Sum_probs=68.2

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.|+|++|+..|++++++                .|....+|+++|.||.++|++++|+..+++++++
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVET----------------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            567889999999999999999999999999                7888889999999999999999999999999998


Q ss_pred             CCCC--HHHHHHHHHHHHH
Q psy793          344 EPNN--VKALFRRGRAQVS  360 (414)
Q Consensus       344 ~p~~--~~a~~~~g~~~~~  360 (414)
                      .|.+  ..+...+...+..
T Consensus        71 ~~~~~~~~~~~~l~~~l~~   89 (100)
T 3ma5_A           71 AREEGTQKDLSELQDAKLK   89 (100)
T ss_dssp             HHHHSCHHHHHHHHHHHHH
T ss_pred             hhcCCchhHHHHHHHHHHH
Confidence            7643  3333344444433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.65  E-value=1.8e-07  Score=74.30  Aligned_cols=104  Identities=13%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH---HHHHHHHHHhcC-C-CCHHHHH
Q psy793          278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR---AINLCDDILLME-P-NNVKALF  352 (414)
Q Consensus       278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~---A~~~~~~al~~~-p-~~~~a~~  352 (414)
                      .....+...|.+++..                .+....+.+++|+|+.+..+...   ++..++..+..+ | ..-.++|
T Consensus        15 ~~l~~~~~~y~~e~~~----------------~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY   78 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAA----------------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVF   78 (126)
T ss_dssp             HHHHHHHHHHHHHHHH----------------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcc----------------CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence            3445556667666654                34456788999999999887666   999999999887 5 5678999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      .+|.+++++|+|++|+.+++.+|+.+|+|..+......+..++.+
T Consensus        79 ~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           79 YLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988888776654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.64  E-value=1e-07  Score=90.09  Aligned_cols=117  Identities=10%  Similarity=-0.020  Sum_probs=107.7

Q ss_pred             HHHHHhhhHHhhhc-CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh-h-CHHHHHHHHHHHH
Q psy793          265 RTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF-K-AYKRAINLCDDIL  341 (414)
Q Consensus       265 ~~~~~~G~~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l-~-~~~~A~~~~~~al  341 (414)
                      ..+..++..+...+ .+++++..+.++|..                .|....+|..++.++..+ + ++++++..|+++|
T Consensus        89 taWn~R~~iL~~l~~~l~eEL~~~~~~L~~----------------nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           89 TVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----------------NLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----------------TCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----------------CCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            44666888888888 599999999999998                888999999999999999 8 9999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFE--------QGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~--------~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +++|.|..||+.++.++..++.++        ++++.++++++.+|.|..++.....+...+..
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            999999999999999999999888        99999999999999999999999999876653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.61  E-value=8.9e-08  Score=88.61  Aligned_cols=113  Identities=13%  Similarity=-0.039  Sum_probs=90.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHH---------------hhccC---CcHHHHHhhHHHHHHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK---------------WYNQS---QSKTQQKHFRSYYTAALLNMAAVQL  325 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~---------------~~~~~---~~~~~~~~~~~~~~~~~~nla~~~~  325 (414)
                      +..+...|..+...|++++|+..|++++...+               .....   ....+.....|....+++++|.++.
T Consensus       151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~  230 (287)
T 3qou_A          151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLH  230 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            45677788888888888888888777654211               00000   0122333447888899999999999


Q ss_pred             HhhCHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          326 KFKAYKRAINLCDDILLMEPNN--VKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      .+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|...|++++.
T Consensus       231 ~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          231 QVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999999998  89999999999999999999999999875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.59  E-value=4e-07  Score=74.49  Aligned_cols=98  Identities=12%  Similarity=0.027  Sum_probs=84.0

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhcCC
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p  345 (414)
                      .|..|...+.+++|+..|++|.+.                  ....+++++|.+|..    .+++++|+.++++|.+.  
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~------------------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--   90 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL------------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--   90 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC------------------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--
Confidence            677788888889999999999865                  346788999999999    89999999999999987  


Q ss_pred             CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          346 NNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .++.+++++|.+|..    .+++++|+..|++|.+..  ++.+...|+
T Consensus        91 g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A           91 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence            689999999999999    899999999999999984  566655554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.58  E-value=2.3e-07  Score=93.42  Aligned_cols=129  Identities=5%  Similarity=-0.007  Sum_probs=96.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHH-HHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYY-TAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~-~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      +..+...|..+.+.|++++|...|++++++                .|.. ..+|.+++.++.+++++++|+..+++|++
T Consensus       321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~  384 (530)
T 2ooe_A          321 MLLYFAYADYEESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE  384 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----------------SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhCc----------------cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            345667888888999999999999999987                3332 24788888888888888888888888888


Q ss_pred             cCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          343 MEPNNVKALFRRGRA-QVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~-~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      ..|.....+...+.. +..+|++++|...|+++++..|++..++..+..+....++..+ .+..|.+.
T Consensus       385 ~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~-Ar~~~~~a  451 (530)
T 2ooe_A          385 DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN-TRVLFERV  451 (530)
T ss_dssp             CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHH-HHHHHHHH
T ss_pred             ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhh-HHHHHHHH
Confidence            888777777766655 3457888888888888888888888888777777665544332 33344433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.58  E-value=3.7e-07  Score=87.05  Aligned_cols=136  Identities=12%  Similarity=0.005  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      .....-.+..+...|..++..|++++|+..+.+++...+...           ......++.++|.++...|++++|+..
T Consensus         7 ~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~   75 (373)
T 1hz4_A            7 IREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----------FYSRIVATSVLGEVLHCKGELTRSLAL   75 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc-----------hhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            344445567788899999999999999999999998743211           234566889999999999999999999


Q ss_pred             HHHHHhcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--------CCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLL--------PNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       337 ~~~al~~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~--------P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +++++.+.+..      ..+++.+|.++..+|++++|+..|++++++.        |....+...++.++...++..+..
T Consensus        76 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (373)
T 1hz4_A           76 MQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  155 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            99999886543      2457889999999999999999999999975        334556677888877777666554


Q ss_pred             H
Q psy793          403 K  403 (414)
Q Consensus       403 k  403 (414)
                      .
T Consensus       156 ~  156 (373)
T 1hz4_A          156 A  156 (373)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.54  E-value=5e-07  Score=70.80  Aligned_cols=71  Identities=15%  Similarity=0.177  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       332 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +|+..++++++.+|+++.+++.+|.++..+|++++|+..|+++++++|++..++..++.++...++..+..
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~   73 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGAR   73 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999998887776654

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.51  E-value=3.6e-07  Score=90.95  Aligned_cols=114  Identities=12%  Similarity=0.087  Sum_probs=93.4

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+.++|..|..+|+|++|+.+|+++|.+....-.        ...|.....+.|+|.+|..+|+|++|+..+++||
T Consensus       349 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG--------~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          349 YVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYH--------HNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC--------TTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            35677888999999999999999999999998643321        1157788999999999999999999999999999


Q ss_pred             hc-----CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          342 LM-----EPNN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       342 ~~-----~p~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      ++     .|+.   .+.+-.++.++..++.|++|...|+++.+-.-+|..
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~  470 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP  470 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            76     3444   456778999999999999999999999765433333

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.48  E-value=7.6e-07  Score=88.60  Aligned_cols=80  Identities=14%  Similarity=-0.015  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC---C
Q psy793          313 YTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPN---D  381 (414)
Q Consensus       313 ~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~---~  381 (414)
                      ...+++++|.+|..    .+++++|+.+++++++..  ++.+++++|.+|..    .+++++|+..|++|++.+|+   +
T Consensus       362 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  439 (490)
T 2xm6_A          362 EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGT  439 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCC
Confidence            36789999999999    899999999999999864  68999999999998    89999999999999999954   8


Q ss_pred             HHHHHHHHHHHHH
Q psy793          382 QQILKEIAFVRKQ  394 (414)
Q Consensus       382 ~~~~~~l~~~~~~  394 (414)
                      ..+...++.+...
T Consensus       440 ~~a~~~l~~~~~~  452 (490)
T 2xm6_A          440 ENRNITEKKLTAK  452 (490)
T ss_dssp             HHHHHHHTTSCHH
T ss_pred             HHHHHHHHhcCHh
Confidence            8888888777553

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.45  E-value=1.8e-06  Score=86.73  Aligned_cols=112  Identities=11%  Similarity=0.086  Sum_probs=96.0

Q ss_pred             HHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-------hhCHH-------HHHHHHHHHHh-cCC
Q psy793          281 HDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-------FKAYK-------RAINLCDDILL-MEP  345 (414)
Q Consensus       281 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-------l~~~~-------~A~~~~~~al~-~~p  345 (414)
                      ..|+..|++|+..                .|....+|+++|..+.+       +|+++       +|+..+++|++ +.|
T Consensus       255 ~~a~~~y~~al~~----------------~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p  318 (530)
T 2ooe_A          255 KRVMFAYEQCLLV----------------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK  318 (530)
T ss_dssp             HHHHHHHHHHHHH----------------HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred             HHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCc
Confidence            5788999999998                78888999999999987       78877       99999999997 899


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ-QILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~-~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      ++..+|+.+|..+..+|++++|...|+++++++|.+. .++..++.+..+.++..+ .++.|.+.
T Consensus       319 ~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~-A~~~~~~A  382 (530)
T 2ooe_A          319 KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKS-GRMIFKKA  382 (530)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence            9999999999999999999999999999999999986 588888888776665544 34444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.31  E-value=6e-06  Score=82.08  Aligned_cols=107  Identities=12%  Similarity=0.046  Sum_probs=55.2

Q ss_pred             HHHHHhhhHHhh----hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHH
Q psy793          265 RTIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINL  336 (414)
Q Consensus       265 ~~~~~~G~~~~~----~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~  336 (414)
                      ..+...|..|+.    .+++++|+..|++|++.                  ....+++++|.+|..    .+++++|+.+
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------------------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  137 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------------------GLPQAQQNLGVMYHEGNGVKVDKAESVKW  137 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            445666767766    67777777777777643                  122344445555544    4455555555


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ++++++.  .++.+++.+|.+|..    .+++++|+..|+++++.  ++..++..++.++.
T Consensus       138 ~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~  194 (490)
T 2xm6_A          138 FRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYS  194 (490)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHh
Confidence            5554443  244445555555444    44455555555554443  24444444444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.31  E-value=5.2e-06  Score=78.53  Aligned_cols=118  Identities=11%  Similarity=0.022  Sum_probs=85.9

Q ss_pred             HHHHHhhhHHhhh---cCHHHHHHHHHHHHHHHHhhccC----------------CcHHH------------HHhhHHHH
Q psy793          265 RTIKNSGNEYFKL---NRMHDAQRKYKKAVRYIKWYNQS----------------QSKTQ------------QKHFRSYY  313 (414)
Q Consensus       265 ~~~~~~G~~~~~~---~~~~~A~~~y~~Al~~~~~~~~~----------------~~~~~------------~~~~~~~~  313 (414)
                      -.++-+|..++.+   .++.+|+.+|++|+++-|.+...                .....            .....+..
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~  276 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL  276 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence            3455566666654   45689999999999874422111                00000            01223445


Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      ..+|.-++..++..|++++|+..+++|+.++| +..+|..+|.++...|++++|++.|++|+.++|..+.
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcCh
Confidence            56677777788888999999999999999996 5778888999999999999999999999999998764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.31  E-value=8e-06  Score=64.96  Aligned_cols=85  Identities=11%  Similarity=0.119  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHhhC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKA---YKRAINLCDDILLMEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~---~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      ....+|.|+|+.+..+   ..+++..++..+..+|. .-..+|.+|.+++++|+|++|.++.+.+|+..|+|..+.....
T Consensus        40 ~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~  119 (134)
T 3o48_A           40 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  119 (134)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHH
Confidence            4667788888888665   56789999999998884 4789999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHH
Q psy793          390 FVRKQMRHH  398 (414)
Q Consensus       390 ~~~~~~~~~  398 (414)
                      .+..++.+.
T Consensus       120 ~Ie~ki~kd  128 (134)
T 3o48_A          120 MVEDKIQKE  128 (134)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            887777653

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.30  E-value=2.4e-06  Score=69.79  Aligned_cols=94  Identities=15%  Similarity=0.096  Sum_probs=82.7

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  356 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~  356 (414)
                      .+++++|+..|++|.+.                .  ...+.  +|.+|.....+++|+.+++++.+.  .++.+++++|.
T Consensus         8 ~~d~~~A~~~~~~aa~~----------------g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~   65 (138)
T 1klx_A            8 KKDLKKAIQYYVKACEL----------------N--EMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGD   65 (138)
T ss_dssp             HHHHHHHHHHHHHHHHT----------------T--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcC----------------C--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHH
Confidence            36889999999999976                2  12223  999999999999999999999987  68999999999


Q ss_pred             HHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          357 AQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       357 ~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      +|..    .+++++|+..|++|.+.  +++.+...|+.++..
T Consensus        66 ~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           66 FYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            9999    89999999999999987  689999999999876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.30  E-value=2.7e-06  Score=83.96  Aligned_cols=121  Identities=11%  Similarity=0.089  Sum_probs=66.1

Q ss_pred             HHHHhhhHHhhhc---CHHHHHHHHHHHHHHHHhhcc-----------C----CcHHHH-----HhhHHHHHHHHHHHHH
Q psy793          266 TIKNSGNEYFKLN---RMHDAQRKYKKAVRYIKWYNQ-----------S----QSKTQQ-----KHFRSYYTAALLNMAA  322 (414)
Q Consensus       266 ~~~~~G~~~~~~~---~~~~A~~~y~~Al~~~~~~~~-----------~----~~~~~~-----~~~~~~~~~~~~nla~  322 (414)
                      .+...|..+.+.|   ++++|+..|++|++.-+....           .    .+.++.     ... +....+++++|.
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g~~~a~~~Lg~  256 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PGYPASWVSLAQ  256 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GGSTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            4677888999999   999999999999876110000           0    000000     000 333445555555


Q ss_pred             H-H--HHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          323 V-Q--LKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-----NFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       323 ~-~--~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg-----~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      + +  ...+++++|+.+++++++..  ++.+++++|.+|. .|     ++++|+..|+++.   |++..+...|+.++.
T Consensus       257 ~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          257 LLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence            5 2  34555555555555555432  5555555555555 33     5555555555555   555555555555544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.25  E-value=1.4e-05  Score=64.38  Aligned_cols=84  Identities=11%  Similarity=0.119  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHhhC---HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKA---YKRAINLCDDILLMEPN-NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~---~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      ....+|.|+|+.+..+   -.+++..++..+..+|. .-..+|.+|.+++++|+|++|..+.+.+|+.+|+|..+.....
T Consensus        39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            4566788888888665   45789999999998884 5679999999999999999999999999999999999999888


Q ss_pred             HHHHHHHH
Q psy793          390 FVRKQMRH  397 (414)
Q Consensus       390 ~~~~~~~~  397 (414)
                      .+..++.+
T Consensus       119 ~Ie~~i~k  126 (144)
T 1y8m_A          119 MVEDKIQK  126 (144)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88766543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.24  E-value=1e-05  Score=78.42  Aligned_cols=137  Identities=14%  Similarity=0.155  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC-----------------CcHHHHHhh-------------
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS-----------------QSKTQQKHF-------------  309 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~-----------------~~~~~~~~~-------------  309 (414)
                      .......+...|..|++.|+|++|+..|.+++.+.+.....                 ...+.....             
T Consensus        51 ~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  130 (434)
T 4b4t_Q           51 RNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR  130 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC
T ss_pred             hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc
Confidence            34456678899999999999999999999999876543211                 011111111             


Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      ......++.++|.+|..+|+|.+|+..+++++..      .+....++..++.+|..+|+|++|...|++++.+.+....
T Consensus       131 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~  210 (434)
T 4b4t_Q          131 VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYC  210 (434)
T ss_dssp             CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCC
Confidence            1223567888889999999999999888888765      2334567888888999999999999999999888654332


Q ss_pred             HHHHHHHHHHHHH
Q psy793          384 ILKEIAFVRKQMR  396 (414)
Q Consensus       384 ~~~~l~~~~~~~~  396 (414)
                      .....+.+...++
T Consensus       211 ~~~~~~~~~~~~g  223 (434)
T 4b4t_Q          211 PTQTVAELDLMSG  223 (434)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHH
Confidence            2233333433333

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.19  E-value=5.7e-06  Score=75.27  Aligned_cols=90  Identities=12%  Similarity=0.016  Sum_probs=80.7

Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH--HHHHHHHHHHHHHHh-----hCHHHHHHHHHHHHhcCCCC-
Q psy793          276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY--YTAALLNMAAVQLKF-----KAYKRAINLCDDILLMEPNN-  347 (414)
Q Consensus       276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~--~~~~~~nla~~~~~l-----~~~~~A~~~~~~al~~~p~~-  347 (414)
                      ..+....|...+++|+++                +|.  ...+|..+|..|.+.     |+.++|..++++||+++|+. 
T Consensus       175 Al~~l~~A~a~lerAleL----------------DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~  238 (301)
T 3u64_A          175 LPDTVHAAVMMLERACDL----------------WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD  238 (301)
T ss_dssp             CHHHHHHHHHHHHHHHHH----------------CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC
T ss_pred             HHHhHHHHHHHHHHHHHh----------------CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC
Confidence            445678899999999999                776  566999999999996     99999999999999999975 


Q ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCC
Q psy793          348 VKALFRRGRAQVSM-NNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       348 ~~a~~~~g~~~~~l-g~~~~A~~~~~~al~l~P~~  381 (414)
                      ..+++..|..+... +++++|.+.+++++..+|..
T Consensus       239 id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          239 PDHHITYADALCIPLNNRAGFDEALDRALAIDPES  273 (301)
T ss_dssp             SHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred             chHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence            99999999999884 99999999999999998763

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.17  E-value=1.3e-05  Score=66.01  Aligned_cols=78  Identities=13%  Similarity=0.087  Sum_probs=66.1

Q ss_pred             HHHHHHhhhHHhhhc---CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhH-H-HHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLN---RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFR-S-YYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       264 a~~~~~~G~~~~~~~---~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~-~-~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      .+..++.|..+.+.+   ++++++..++..++.                + | ....+++++|..|+++++|++|+.+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~----------------~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~   95 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK----------------GSKEEQRDYVFYLAVGNYRLKEYEKALKYVR   95 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH----------------SCHHHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----------------CCccchHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            355777888888877   777999999998887                4 5 567899999999999999999999999


Q ss_pred             HHHhcCCCCHHHHHHHHHH
Q psy793          339 DILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       339 ~al~~~p~~~~a~~~~g~~  357 (414)
                      ++|+++|+|..|..-+-.+
T Consensus        96 ~lL~ieP~n~QA~~Lk~~i  114 (152)
T 1pc2_A           96 GLLQTEPQNNQAKELERLI  114 (152)
T ss_dssp             HHHHHCTTCHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHH
Confidence            9999999999887655443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.14  E-value=1.3e-05  Score=79.09  Aligned_cols=105  Identities=12%  Similarity=-0.014  Sum_probs=80.9

Q ss_pred             HHHHHhhhH-H--hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-----CHHHHHHH
Q psy793          265 RTIKNSGNE-Y--FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-----AYKRAINL  336 (414)
Q Consensus       265 ~~~~~~G~~-~--~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-----~~~~A~~~  336 (414)
                      ..+...|.. +  ...+++++|+..|++|++.                  ....+++++|.+|. .|     ++++|+.+
T Consensus       249 ~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~------------------g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~  309 (452)
T 3e4b_A          249 ASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA------------------DQPRAELLLGKLYY-EGKWVPADAKAAEAH  309 (452)
T ss_dssp             HHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHH-HCSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHH-cCCCCCCCHHHHHHH
Confidence            456677777 3  4688999999999998864                  25677888888887 44     88899999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      +++|+   +.++.+++++|.+|..    ..++++|+..|+++.+.  ++..+...|+.++.
T Consensus       310 ~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~  365 (452)
T 3e4b_A          310 FEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFS  365 (452)
T ss_dssp             HHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHH
T ss_pred             HHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHH
Confidence            88888   7888888888888876    44888888888888774  45566666666654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.11  E-value=1.2e-05  Score=77.81  Aligned_cols=104  Identities=9%  Similarity=-0.011  Sum_probs=81.9

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..++..|+|.+|+..+.+++.......          ..+....++.+++.+|..+++|++|...+++++.+
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~  204 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD----------DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTA  204 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS----------CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc----------cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            34556789999999999999999999998854433          15677889999999999999999999999999988


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                      .+.........+..+..+|.+..+...|..|...
T Consensus       205 ~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~  238 (434)
T 4b4t_Q          205 ANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSY  238 (434)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred             hhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            6544444556677777777777676667766543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.08  E-value=2e-05  Score=85.56  Aligned_cols=124  Identities=15%  Similarity=0.092  Sum_probs=91.1

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc----cCCcHHHHHhh--HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN----QSQSKTQQKHF--RSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~----~~~~~~~~~~~--~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      .+.|..+...|.|++|...|+++-.......    .....+...++  ......+|+++|.++.++|+|++|+..|.+| 
T Consensus      1053 ~eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1053 PDIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            3469999999999999999988764322100    00111111111  2344789999999999999999999999886 


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                          +++.+|++.|.++..+|+|++|+++|+.|.+..++ +.+...++.++.++++
T Consensus      1132 ----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaYAKl~r 1182 (1630)
T 1xi4_A         1132 ----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFALAKTNR 1182 (1630)
T ss_pred             ----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHHHhhcC
Confidence                88999999999999999999999999999998844 2223335555555433

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.08  E-value=6.8e-05  Score=62.09  Aligned_cols=118  Identities=8%  Similarity=-0.000  Sum_probs=88.6

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC--
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME--  344 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~--  344 (414)
                      +++....++..+.|+.|+..+..++.+.+.......       -.....++..+|.+++..++|.+|...|++||++.  
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~s-------p~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~   95 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFS-------PPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKA   95 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSC-------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCccccc-------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence            677888999999999999999999998543331111       23456788999999999999999999999998552  


Q ss_pred             ----C-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q psy793          345 ----P-------------------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVR  392 (414)
Q Consensus       345 ----p-------------------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~  392 (414)
                          +                   ......|+.|.||..++++++|+..++..-... ..+.+...|++++
T Consensus        96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~-Rt~kvnm~LakLy  165 (167)
T 3ffl_A           96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ-RTPKINMLLANLY  165 (167)
T ss_dssp             C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG-CCHHHHHHHHHHC
T ss_pred             HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh-cCHHHHHHHHHHh
Confidence                1                   112678999999999999999999887631111 2355556665553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.07  E-value=2.5e-05  Score=72.38  Aligned_cols=122  Identities=12%  Similarity=0.095  Sum_probs=96.2

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHH--HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS--YYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      +...|..+...|++++|+..+.++|..                .+  ....++..++.+++++++.+.|.+.+++..+.+
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~----------------~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~  166 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDN----------------DEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAI  166 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTS----------------SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhcc----------------CCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            457889999999999999999999765                43  678899999999999999999999999999999


Q ss_pred             CC----CHHHHHHHHHH--HHHcC--CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q psy793          345 PN----NVKALFRRGRA--QVSMN--NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMT  405 (414)
Q Consensus       345 p~----~~~a~~~~g~~--~~~lg--~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~  405 (414)
                      |+    +...+..++.+  ....|  ++++|...|+++.+..|+.......+. ++..+++..+.++..
T Consensus       167 ~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~~L  234 (310)
T 3mv2_B          167 EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQGIV  234 (310)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHHHH
Confidence            83    23345555555  55556  999999999999998887333333333 777777777776653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.06  E-value=3.3e-05  Score=84.03  Aligned_cols=107  Identities=15%  Similarity=0.183  Sum_probs=87.6

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..++..|+|++|+.+|.+|-                        .|..+|.||.++|+|++|++.+.+|....+
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~------------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~a 1252 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS------------------------NFGRLASTLVHLGEYQAAVDGARKANSTRT 1252 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh------------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHH
Confidence            45678999999999999999998753                        456788899999999999999888854433


Q ss_pred             -------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          346 -------------------------NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       346 -------------------------~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                                               .++..+..++..|..+|.|++|+..|++++.++|.+......++.++.+-+
T Consensus      1253 Wkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A         1253 WKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCC
Confidence                                     134455677788999999999999999999999999999988888877543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.93  E-value=6.2e-05  Score=69.77  Aligned_cols=115  Identities=8%  Similarity=-0.020  Sum_probs=87.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHH------HHHHHHHHHHHHHHHhh--CHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRS------YYTAALLNMAAVQLKFK--AYKRAIN  335 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~~l~--~~~~A~~  335 (414)
                      .+.+...+..+++.|+.+.|.+.+++..+.                .+      ..+.+++--|++.+..|  ++.+|..
T Consensus       136 lea~~l~vqi~L~~~r~d~A~k~l~~~~~~----------------~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~  199 (310)
T 3mv2_B          136 TELLLLAIEVALLNNNVSTASTIFDNYTNA----------------IEDTVSGDNEMILNLAESYIKFATNKETATSNFY  199 (310)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------------CccccccchHHHHHHHHHHHHHHhCCccHHHHHH
Confidence            344556778889999999999999998777                44      22223333355577777  9999999


Q ss_pred             HHHHHHhcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----------CCCCHHHHHHHHHHHHHHHH
Q psy793          336 LCDDILLMEPN--NVKALFRRGRAQVSMNNFEQGLQDYEQALDL----------LPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       336 ~~~~al~~~p~--~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l----------~P~~~~~~~~l~~~~~~~~~  397 (414)
                      .|+++.+..|+  ....+++   +++.+|++++|.+.+++++++          +|+|+.++.++..+...+++
T Consensus       200 ~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          200 YYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             HHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            99999888886  3445555   999999999999999988887          58899999777666555543

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.83  E-value=5.6e-05  Score=73.87  Aligned_cols=92  Identities=5%  Similarity=0.069  Sum_probs=74.1

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+.+.|..|..+|+|++|+.+|+++|.+....-.        ...|.....++|+|.+|..+|+|++|+..+++|+
T Consensus       327 ~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg--------~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          327 YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP--------GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC--------SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC--------CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            45777888999999999999999999999998653321        1157888999999999999999999999999999


Q ss_pred             hc-----CCCCH---HHHHHHHHHHHHc
Q psy793          342 LM-----EPNNV---KALFRRGRAQVSM  361 (414)
Q Consensus       342 ~~-----~p~~~---~a~~~~g~~~~~l  361 (414)
                      ++     .|+++   ..+.+++.+...+
T Consensus       399 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          399 DIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            76     45554   4556666666544

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.82  E-value=4.6e-05  Score=57.52  Aligned_cols=69  Identities=16%  Similarity=0.193  Sum_probs=60.9

Q ss_pred             HHHHHHhhhHHhhhcC---HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNR---MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~---~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      +..+...|..++-.++   ..+|...+++||.+                +|..+.+++.+|..+++.|+|++|+.+++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~----------------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL----------------EPYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH----------------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4556777777765444   79999999999999                9999999999999999999999999999999


Q ss_pred             HhcCCCCH
Q psy793          341 LLMEPNNV  348 (414)
Q Consensus       341 l~~~p~~~  348 (414)
                      ++.+|.++
T Consensus        70 l~~~p~~~   77 (93)
T 3bee_A           70 LDSNDPNL   77 (93)
T ss_dssp             HTCCCTTC
T ss_pred             HhhCCCCc
Confidence            99999843

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.75  E-value=0.00014  Score=70.49  Aligned_cols=109  Identities=15%  Similarity=0.110  Sum_probs=70.2

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+..+|..+.+.|+|++|++.|.+|..                     +..|...+.++...++|+.|..+... |.
T Consensus       147 ~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~---------------------~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~  204 (449)
T 1b89_A          147 NVSNFGRLASTLVHLGEYQAAVDGARKANS---------------------TRTWKEVCFACVDGKEFRLAQMCGLH-IV  204 (449)
T ss_dssp             HTTCHHHHHHHHHTTTCHHHHHHHHHHHTC---------------------HHHHHHHHHHHHHTTCHHHHHHTTTT-TT
T ss_pred             HhhhHHHHHHHHHHhccHHHHHHHHHHcCC---------------------chhHHHHHHHHHHcCcHHHHHHHHHH-HH
Confidence            333344455555555555555555555421                     24445555555566666666443332 22


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      .+|   .-...+..+|...|.+++|+..+++++.+++.+-.+...++.++.+-+
T Consensus       205 ~~a---d~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~  255 (449)
T 1b89_A          205 VHA---DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK  255 (449)
T ss_dssp             TCH---HHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC
T ss_pred             hCH---hhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcC
Confidence            333   334456678999999999999999999999999999999988887543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.74  E-value=0.00012  Score=66.60  Aligned_cols=66  Identities=8%  Similarity=-0.041  Sum_probs=58.4

Q ss_pred             CHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHH
Q psy793          329 AYKRAINLCDDILLMEPN--NVKALFRRGRAQVSM-----NNFEQGLQDYEQALDLLPND-QQILKEIAFVRKQ  394 (414)
Q Consensus       329 ~~~~A~~~~~~al~~~p~--~~~a~~~~g~~~~~l-----g~~~~A~~~~~~al~l~P~~-~~~~~~l~~~~~~  394 (414)
                      ....|...+++|++++|+  +..+|..+|..|..+     |+.++|.+.|++|++++|+. ..++..++..+..
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            478999999999999999  677999999999996     99999999999999999975 7777777776655

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.71  E-value=0.00011  Score=71.76  Aligned_cols=74  Identities=4%  Similarity=0.029  Sum_probs=63.4

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+.+.|..|..+|+|++|+.+|+++|.+....-..        ..|.....++|+|.+|..+|+|++|+..+++|+
T Consensus       338 ~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~--------~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          338 YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV--------YSLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS--------SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC--------CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            346678889999999999999999999999986533211        147788899999999999999999999999999


Q ss_pred             hc
Q psy793          342 LM  343 (414)
Q Consensus       342 ~~  343 (414)
                      ++
T Consensus       410 ~i  411 (433)
T 3qww_A          410 AI  411 (433)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.45  E-value=0.00026  Score=68.70  Aligned_cols=103  Identities=14%  Similarity=0.153  Sum_probs=71.9

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      .+...|..++..|.|++|+.+|.++                        .-|.++|.|+.++|+|++|++.+.+|     
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a------------------------~n~~~LA~~L~~Lg~yq~AVea~~KA-----  174 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV------------------------SNFGRLASTLVHLGEYQAAVDGARKA-----  174 (449)
T ss_dssp             -------------CTTTHHHHHHHT------------------------TCHHHHHHHHHTTTCHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh------------------------hhHHHHHHHHHHhccHHHHHHHHHHc-----
Confidence            6888999999999999999999865                        35679999999999999999999999     


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHH
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      .+++.|.....++...|+|+.|..+... +..+|++   ...+..++.+.+...+.
T Consensus       175 ~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-L~~~ad~---l~~lv~~Yek~G~~eEa  226 (449)
T 1b89_A          175 NSTRTWKEVCFACVDGKEFRLAQMCGLH-IVVHADE---LEELINYYQDRGYFEEL  226 (449)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHTTTT-TTTCHHH---HHHHHHHHHHTTCHHHH
T ss_pred             CCchhHHHHHHHHHHcCcHHHHHHHHHH-HHhCHhh---HHHHHHHHHHCCCHHHH
Confidence            4789999999999999999999877775 4455544   33455566555555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.31  E-value=0.0014  Score=51.90  Aligned_cols=45  Identities=20%  Similarity=0.256  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGR  356 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~  356 (414)
                      ..-.+++.+|..++++|+|.+|+.+++.+|+++|+|..|.--+..
T Consensus        72 ~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           72 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            566889999999999999999999999999999999887654433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.31  E-value=0.0032  Score=60.48  Aligned_cols=113  Identities=12%  Similarity=0.021  Sum_probs=93.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhcc-C-----CcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ-S-----QSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  337 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  337 (414)
                      ...+...|......++...|+..+.+|+.+..-... .     -.......+......+...++.+++.+|++.+|+..+
T Consensus       115 f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l  194 (388)
T 2ff4_A          115 FVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAEL  194 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            445566677777789999999999999987421110 0     0134456667788889999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          338 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       338 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      ..++..+|-+..+|..+-.+++..|+..+|++.|+++.+
T Consensus       195 ~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          195 EALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999865

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.19  E-value=0.0019  Score=53.42  Aligned_cols=94  Identities=16%  Similarity=0.108  Sum_probs=65.4

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCc----------HHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQS----------KTQQKHFRSYYTAALLNMAAVQLKFKAYKR  332 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~----------~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  332 (414)
                      .+..+...|+.+|.+++|..|...|++||...........          ..+... .+...++.+.+|.||.+++++++
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~-~~~e~Elkykia~C~~~l~~~~~  140 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQC-LPSEIEVKYKLAECYTVLKQDKD  140 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------C-CCCHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCccccc-ccchHHHHHHHHHHHHHHCCHHH
Confidence            4677889999999999999999999999988653221110          000001 12345788999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHH
Q psy793          333 AINLCDDILLMEPNNVKALFRRGRAQ  358 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~a~~~~g~~~  358 (414)
                      |+..++.+-. ....++....+|..|
T Consensus       141 Ai~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          141 AIAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            9998665422 234667777777654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.07  E-value=0.0048  Score=48.97  Aligned_cols=46  Identities=17%  Similarity=0.113  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  357 (414)
                      ..-.+++.+|..+.++|+|.+|..+++.+|+++|+|..|.--+..+
T Consensus        76 ~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           76 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            4568899999999999999999999999999999998876544433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.03  E-value=0.011  Score=47.92  Aligned_cols=119  Identities=8%  Similarity=0.015  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINL  336 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~  336 (414)
                      ++.-...+..+-..|+-+.. +-.+.-+..|++|+..+++..        ......++.+|.+.|.- ..+++.++|.+.
T Consensus        13 yd~W~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k--------~~~wrrYI~LWIrYA~~-~ei~D~d~aR~v   82 (161)
T 4h7y_A           13 PEDWLSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDK--------YGQNESFARIQVRFAEL-KAIQEPDDARDY   82 (161)
T ss_dssp             HHHHHHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGG--------GTTCHHHHHHHHHHHHH-HHHHCGGGCHHH
T ss_pred             HHHHHHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccc--------cccHHHHHHHHHHHHHH-HHhcCHHHHHHH
Confidence            33333334444334443333 333788899999999855431        33467788888888855 788999999999


Q ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793          337 CDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  385 (414)
Q Consensus       337 ~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  385 (414)
                      |+.++.+....++.|...|+--.++|+...|.+.+.+|+.+.|...+..
T Consensus        83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l  131 (161)
T 4h7y_A           83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML  131 (161)
T ss_dssp             HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence            9999999888999999999999999999999999999999999876544

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=97.01  E-value=0.022  Score=58.70  Aligned_cols=142  Identities=6%  Similarity=0.046  Sum_probs=96.2

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhcc------CCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQ------SQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~------~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      ..+....+.|+++.|...|++++..+.....      ....+...........+|...+....+.+..+.|...+.+|++
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555677788888888888876421100      0001111122223456788888888889999999999999998


Q ss_pred             c-CCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy793          343 M-EPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  411 (414)
Q Consensus       343 ~-~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  411 (414)
                      . .+...+.|...|..-...+ +++.|.+.|+++++..|++...+..+......+++ .+..|..|.+...
T Consensus       463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~-~~~AR~lferal~  532 (679)
T 4e6h_A          463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNE-ESQVKSLFESSID  532 (679)
T ss_dssp             TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-HHHHHHHHHHHTT
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCC-HHHHHHHHHHHHH
Confidence            8 5555677777777766665 59999999999999999999888766666554433 3445556665443

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.82  E-value=0.0088  Score=48.07  Aligned_cols=44  Identities=18%  Similarity=0.130  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  355 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g  355 (414)
                      ..-.+++.+|..+.++++|.+|..+++.+|+++|+|..|.--+.
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            35578999999999999999999999999999999987754433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.68  E-value=0.01  Score=61.23  Aligned_cols=82  Identities=13%  Similarity=0.008  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHH-HHHHHHHhcCCCCHHHHHHHHHHH
Q psy793          280 MHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAI-NLCDDILLMEPNNVKALFRRGRAQ  358 (414)
Q Consensus       280 ~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~-~~~~~al~~~p~~~~a~~~~g~~~  358 (414)
                      .+.....|++||..                .|....+|+..|..+...++.++|. ..+++|+...|.+...|+..+...
T Consensus       325 ~~Rv~~~Ye~aL~~----------------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~e  388 (679)
T 4e6h_A          325 KARMTYVYMQAAQH----------------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQY  388 (679)
T ss_dssp             HHHHHHHHHHHHHH----------------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----------------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567789999998                6778899999999999999999997 999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHhh
Q psy793          359 VSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       359 ~~lg~~~~A~~~~~~al~l  377 (414)
                      ...|++++|...|+++++.
T Consensus       389 e~~~~~e~aR~iyek~l~~  407 (679)
T 4e6h_A          389 ELNTKIPEIETTILSCIDR  407 (679)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHH
Confidence            9999999999999999985

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.36  E-value=0.025  Score=58.57  Aligned_cols=64  Identities=11%  Similarity=0.197  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy793          311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA  374 (414)
Q Consensus       311 ~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a  374 (414)
                      +....++.--|.-++..++|+-|+..+++|....|..-..|+.++.||..+|+|+.|+-.+..|
T Consensus       334 ~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          334 NCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            4445566667777888999999999999999999999999999999999999999999988887

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.13  E-value=0.013  Score=55.29  Aligned_cols=67  Identities=4%  Similarity=-0.037  Sum_probs=57.4

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+...+..++..|++++|+..+++|+.+                ++. ...|..+|.++...|++++|++.+.+|+.++
T Consensus       278 ~~~~alal~~l~~gd~d~A~~~l~rAl~L----------------n~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          278 IIYQIKAVSALVKGKTDESYQAINTGIDL----------------EMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----------------CCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhc----------------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            34455677777889999999999999999                443 4577889999999999999999999999999


Q ss_pred             CCCH
Q psy793          345 PNNV  348 (414)
Q Consensus       345 p~~~  348 (414)
                      |...
T Consensus       341 P~~~  344 (372)
T 3ly7_A          341 PGAN  344 (372)
T ss_dssp             CSHH
T ss_pred             CCcC
Confidence            9765

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=95.56  E-value=0.12  Score=49.43  Aligned_cols=99  Identities=10%  Similarity=0.029  Sum_probs=80.2

Q ss_pred             HhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC----
Q psy793          269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME----  344 (414)
Q Consensus       269 ~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~----  344 (414)
                      ..|..|+..|+|.+|+..+.+.++-+....          .......++......|..++++.++...+++|....    
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d----------d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLD----------DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS----------CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccc----------cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence            589999999999999999999998765422          146778899999999999999999999999997553    


Q ss_pred             C-CC--HHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Q psy793          345 P-NN--VKALFRRGRAQV-SMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       345 p-~~--~~a~~~~g~~~~-~lg~~~~A~~~~~~al~l  377 (414)
                      + ..  +.....-|..++ ..++|..|..+|-.+++-
T Consensus       174 ~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          174 CPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            1 22  233445588899 899999999999998753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.44  E-value=0.48  Score=46.74  Aligned_cols=128  Identities=8%  Similarity=-0.017  Sum_probs=88.5

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC--------CcHHHHHh----------------hHHHHHHHHHHHH
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS--------QSKTQQKH----------------FRSYYTAALLNMA  321 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~--------~~~~~~~~----------------~~~~~~~~~~nla  321 (414)
                      .+...+..+...|+.+.|...|.+|+.. +.....        ...+....                .......+|...+
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~  293 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL  293 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence            3556677778889999999999999988 432100        00000000                0122335677888


Q ss_pred             HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg-~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      ....+.+..+.|...+++| ...+.....|...|..-...+ +.+.|...|+++++..|+++..+.........+
T Consensus       294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~  367 (493)
T 2uy1_A          294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRI  367 (493)
T ss_dssp             HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHc
Confidence            8888889999999999999 443345567777777766666 699999999999999999887765554444333

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.40  E-value=0.098  Score=51.63  Aligned_cols=81  Identities=7%  Similarity=-0.003  Sum_probs=73.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      .++..+|........+..|..+|.+|+.+.|++..+|..+|......++.-+|+-+|-+++......+.+..+|..+...
T Consensus       153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            46677888888888899999999999999999999999999999999999999999999999887789999999888765


Q ss_pred             H
Q psy793          395 M  395 (414)
Q Consensus       395 ~  395 (414)
                      .
T Consensus       233 ~  233 (497)
T 1ya0_A          233 A  233 (497)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=95.33  E-value=0.23  Score=40.97  Aligned_cols=72  Identities=18%  Similarity=0.144  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHH--hc---------------CCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDIL--LM---------------EPNNVKALF-RRGRAQVSMNNFEQGLQDYEQAL  375 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al--~~---------------~p~~~~a~~-~~g~~~~~lg~~~~A~~~~~~al  375 (414)
                      .+..+--+.||.++++|..|+...+..|  +.               +|.+.+-++ -+|..+...|+.++|+..|....
T Consensus        62 ~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf  141 (242)
T 3kae_A           62 CTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSF  141 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence            3455667899999999999999999999  22               344455444 56999999999999999999999


Q ss_pred             hhCCCCHHHH
Q psy793          376 DLLPNDQQIL  385 (414)
Q Consensus       376 ~l~P~~~~~~  385 (414)
                      ..+|--+.+.
T Consensus       142 ~~~~lf~~vE  151 (242)
T 3kae_A          142 GKSFLFSPVE  151 (242)
T ss_dssp             HHCCCHHHHH
T ss_pred             CCccccchHH
Confidence            9887655544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.93  E-value=0.19  Score=44.95  Aligned_cols=70  Identities=13%  Similarity=0.118  Sum_probs=61.6

Q ss_pred             HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      ..+++.+..++|+..+...++-+|.+++....+-+.+.-.|+|+.|.+.++.+.+++|+.......+..+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999986655444333

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=94.51  E-value=0.49  Score=43.39  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=70.7

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC-------HHHHHHH--H
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-------YKRAINL--C  337 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-------~~~A~~~--~  337 (414)
                      ....|..++..|+|++|+..|+.+|..+.-...... ++..+.......+...+-.+-+++.+       ..+.++.  |
T Consensus       117 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~-~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY  195 (325)
T 3mv2_A          117 KMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDA-EDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY  195 (325)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            556899999999999999999999999876654433 22223333333332222222223311       1111111  1


Q ss_pred             HHHHhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHHHHH
Q psy793          338 DDILLMEPNNVKALFRRGR-AQVSMNNFEQGLQDYEQALDLLPNDQQILK  386 (414)
Q Consensus       338 ~~al~~~p~~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P~~~~~~~  386 (414)
                      =.-.++.|..--.-++.|. ..++.++|.-|....++.|++.|..+.+.+
T Consensus       196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~q  245 (325)
T 3mv2_A          196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQ  245 (325)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHH
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHH
Confidence            1112334444334445555 366789999999999999999997554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.34  E-value=0.2  Score=48.47  Aligned_cols=99  Identities=12%  Similarity=0.100  Sum_probs=77.9

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC--
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME--  344 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~--  344 (414)
                      +..+|..|++.|+++.|++.|.++......             ....+.++++...+++..++|..+..++.++-.+-  
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-------------~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAIS-------------TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-------------CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-------------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            456899999999999999999998876322             23456788999999999999999999999996552  


Q ss_pred             -CCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          345 -PNN-V--KALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       345 -p~~-~--~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                       ++. .  +.....|..+...++|..|...|-.++.-.
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence             221 2  234455777888899999999998887654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.26  E-value=0.063  Score=55.62  Aligned_cols=61  Identities=11%  Similarity=0.073  Sum_probs=55.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ...+..++..+.++++|+-|+.+-++|+.+                .|.....|+.||.||.++++|+.|+-.++-+
T Consensus       337 ~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~----------------aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          337 SDLLNIQTNFLLNRGDYELALGVSNTSTEL----------------ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHHHhc----------------CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            346777899999999999999999999999                7888899999999999999999999877666

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=93.99  E-value=0.21  Score=36.19  Aligned_cols=40  Identities=25%  Similarity=0.244  Sum_probs=34.4

Q ss_pred             HHH-HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh
Q psy793          257 LNQ-MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW  296 (414)
Q Consensus       257 ~~~-~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~  296 (414)
                      ... ....|..+..+|...=+.|+|++|+.+|..||+++-.
T Consensus         3 ~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   43 (83)
T 2v6y_A            3 AQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQ   43 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            344 5677888999999999999999999999999998643

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.46  E-value=0.48  Score=42.33  Aligned_cols=63  Identities=8%  Similarity=0.008  Sum_probs=56.6

Q ss_pred             hhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793          271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  349 (414)
Q Consensus       271 G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~  349 (414)
                      ...+++.++.++|+......|+.                .|.+......+-..+.-.|+|++|...++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~----------------~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKA----------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHT----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHh----------------CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            34678999999999999999998                8888888889999999999999999999999999997644

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=93.22  E-value=4.4  Score=37.03  Aligned_cols=116  Identities=10%  Similarity=0.160  Sum_probs=70.3

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCH-------HHHHHHHHH
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY-------KRAINLCDD  339 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~-------~~A~~~~~~  339 (414)
                      ....|..++..|+|++|+..|+.+|..+.-.... ..++..+.......+...+-.+-+++.+-       +.....++-
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~-~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lEL  183 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD-NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEM  183 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC-SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHH
Confidence            5678999999999999999999999987655432 23333343333333333332233333211       121122222


Q ss_pred             H-----HhcCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCCCHH
Q psy793          340 I-----LLMEPNNVKALFRRGR-AQVSMNNFEQGLQDYEQALDLLPNDQQ  383 (414)
Q Consensus       340 a-----l~~~p~~~~a~~~~g~-~~~~lg~~~~A~~~~~~al~l~P~~~~  383 (414)
                      +     .++.|.+--.-++.|. ..++.++|.-|....++.|++.|..+.
T Consensus       184 AAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~  233 (320)
T 3mkr_B          184 AAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPEV  233 (320)
T ss_dssp             HHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHH
Confidence            2     2344544444445555 366789999999999999999986443

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.03  E-value=1.1  Score=42.77  Aligned_cols=139  Identities=9%  Similarity=0.087  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh----------------hccC-CcHH----------HHHhh-H
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW----------------YNQS-QSKT----------QQKHF-R  310 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~----------------~~~~-~~~~----------~~~~~-~  310 (414)
                      .....-..+...|..|.+.|++++-..........+..                .... ...+          ++... .
T Consensus        14 ~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~   93 (394)
T 3txn_A           14 RIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEK   93 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence            34445677889999999999999888877444332211                1100 0111          11111 1


Q ss_pred             HHHH--HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---C
Q psy793          311 SYYT--AALLNMAAVQLKFKAYKRAINLCDDILLMEPN------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLL---P  379 (414)
Q Consensus       311 ~~~~--~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~---P  379 (414)
                      -.+.  .+-..+|..|+..|+|.+|+..++++++.-..      -...+....+.|..++++.++.+.|.+|....   +
T Consensus        94 r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~  173 (394)
T 3txn_A           94 RTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY  173 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC
Confidence            1122  24458899999999999999999988864211      13466777889999999999999999998764   3


Q ss_pred             CCHHHHHHHHHHHHHHHH
Q psy793          380 NDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       380 ~~~~~~~~l~~~~~~~~~  397 (414)
                      .++.++..+..+...+.-
T Consensus       174 ~~p~i~a~i~~~~Gi~~l  191 (394)
T 3txn_A          174 CPPKVQGALDLQSGILHA  191 (394)
T ss_dssp             CCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhHHHH
Confidence            456666555555444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=92.60  E-value=1.1  Score=44.09  Aligned_cols=112  Identities=8%  Similarity=-0.020  Sum_probs=82.1

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHhc
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK-AYKRAINLCDDILLM  343 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~-~~~~A~~~~~~al~~  343 (414)
                      ..+..-+....+.+..+.|...|.+| .. +               +....+|...|..-...+ +.+.|...++.+++.
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~---------------~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~  349 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-E---------------GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLK  349 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S---------------CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C---------------CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            44556666666778899999999999 32 1               111235555566666666 599999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      -|+.+..+...+.....+|+.+.|...|+++    +....++..........+.
T Consensus       350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSC
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCC
Confidence            9998887777788788899999999999998    3456666666655555443

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=92.57  E-value=0.45  Score=34.39  Aligned_cols=40  Identities=20%  Similarity=0.194  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW  296 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~  296 (414)
                      .....+.|..+..+|...=+.|+|++|+.+|.+||+.+-.
T Consensus        12 ~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~   51 (83)
T 2w2u_A           12 QVMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQ   51 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            3456677888999999999999999999999999998653

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=92.25  E-value=7.1  Score=38.33  Aligned_cols=133  Identities=11%  Similarity=0.081  Sum_probs=89.0

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHH------------HHhhccCC---------cHHHHHhh-HH-------HHHHHH
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRY------------IKWYNQSQ---------SKTQQKHF-RS-------YYTAAL  317 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~------------~~~~~~~~---------~~~~~~~~-~~-------~~~~~~  317 (414)
                      +...=+.+.+.|++++|+..|.+..+.            +.-.....         ..+....+ ..       .+...|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            344456788999999999999877653            11000000         01111111 11       134578


Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLME-PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~~~~~~~~l~~~~~~  394 (414)
                      ..+..+|.+.|++++|+..+++..+.. ..+...|..+-.+|...|++++|.+.|+...+.  .|+ ......+-.+..+
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~  187 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhh
Confidence            888899999999999999999887653 337778888889999999999999999998875  354 4444555555555


Q ss_pred             HHHHHH
Q psy793          395 MRHHLN  400 (414)
Q Consensus       395 ~~~~~~  400 (414)
                      .++..+
T Consensus       188 ~g~~d~  193 (501)
T 4g26_A          188 TKNADK  193 (501)
T ss_dssp             TTCHHH
T ss_pred             CCCHHH
Confidence            544433

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=92.18  E-value=4.4  Score=37.48  Aligned_cols=110  Identities=10%  Similarity=0.034  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHhhhHHhhhcCHHHHHHH-HHHHHHHHHhhccCCcHHHHHhhHHHHH------------HHHHHHHHHH
Q psy793          258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRK-YKKAVRYIKWYNQSQSKTQQKHFRSYYT------------AALLNMAAVQ  324 (414)
Q Consensus       258 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~-y~~Al~~~~~~~~~~~~~~~~~~~~~~~------------~~~~nla~~~  324 (414)
                      ++.++.-..++...+.|.++++|++|++. |.-|+.++....    .....++.-..+            ....++..++
T Consensus        29 ~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q----~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~  104 (336)
T 3lpz_A           29 EEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQ----GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL  104 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCC----cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            34467777888899999999999999996 555555544211    011111111111            1111222222


Q ss_pred             HHhhC--------HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q psy793          325 LKFKA--------YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDY  371 (414)
Q Consensus       325 ~~l~~--------~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~  371 (414)
                      .....        .++|+.+..+.=...-.++..|..+|..|..-+++.+|...|
T Consensus       105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            22221        122333333211122346778888899999999998887776

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=92.18  E-value=0.95  Score=35.02  Aligned_cols=40  Identities=15%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      ..+..|..+..+|...=..++|++|+.+|..|++++-...
T Consensus        13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~al   52 (117)
T 2cpt_A           13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVV   52 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence            4667788889999999999999999999999999865433

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.04  E-value=3  Score=40.35  Aligned_cols=105  Identities=14%  Similarity=0.067  Sum_probs=79.3

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .++.....+..++..|+|.+|.........-.  .. ..+       ....+.++......|+..++|.+|...++++..
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et--~~-~~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~  205 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVET--YG-SME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILK  205 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CS-SSC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--Hh-ccc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            36667788999999999999999988776321  11 111       456678888999999999999999999998742


Q ss_pred             ---cCCCC--HH--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q psy793          343 ---MEPNN--VK--ALFRRGRAQVSMNNFEQGLQDYEQALDL  377 (414)
Q Consensus       343 ---~~p~~--~~--a~~~~g~~~~~lg~~~~A~~~~~~al~l  377 (414)
                         -.+..  .+  .+...|..+...++|.+|..+|..+++.
T Consensus       206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence               12222  23  3456688888999999999999998864

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=92.04  E-value=1.2  Score=32.97  Aligned_cols=39  Identities=10%  Similarity=0.019  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      ....|..+...|...-+.++|++|+.+|..|++++-...
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~al   49 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVL   49 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence            455678888999999999999999999999999875544

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=91.82  E-value=0.85  Score=33.03  Aligned_cols=38  Identities=8%  Similarity=0.087  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHh
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKW  296 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~  296 (414)
                      .....|..+..+|...=..|+|++|+.+|..|++++-.
T Consensus         8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35567888888999999999999999999999998643

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=91.36  E-value=1.5  Score=43.22  Aligned_cols=102  Identities=9%  Similarity=-0.046  Sum_probs=80.1

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC-C
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME-P  345 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~-p  345 (414)
                      +...-..+.+.|++++|...|.+..+.    .           -......|..+-.+|.+.|++++|.+.+++..+.. .
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~----g-----------~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~  172 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAF----G-----------IQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV  172 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHT----T-----------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc----C-----------CCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            455667888999999999999876543    0           01234567788889999999999999999988653 3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHH
Q psy793          346 NNVKALFRRGRAQVSMNNFEQGLQDYEQALDL--LPNDQQ  383 (414)
Q Consensus       346 ~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l--~P~~~~  383 (414)
                      .+...|..+-.++...|++++|.+.|++..+.  .|+...
T Consensus       173 Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T  212 (501)
T 4g26_A          173 PEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKST  212 (501)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred             CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHH
Confidence            37778889999999999999999999998764  465443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.29  E-value=2.6  Score=40.01  Aligned_cols=86  Identities=8%  Similarity=-0.036  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCC--------C--C------------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEP--------N--N------------VKALFRRGRAQVSMNNFEQGLQDYEQA  374 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p--------~--~------------~~a~~~~g~~~~~lg~~~~A~~~~~~a  374 (414)
                      +...|......++...|...+.+|+.+-.        .  .            ..+...++.++..+|++++|+..++++
T Consensus       118 l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~  197 (388)
T 2ff4_A          118 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEAL  197 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34444444556889999999999997731        1  1            124556788889999999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          375 LDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       375 l~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +..+|-+..++..+..++...+++.+..
T Consensus       198 ~~~~P~~E~~~~~lm~al~~~Gr~~~Al  225 (388)
T 2ff4_A          198 TFEHPYREPLWTQLITAYYLSDRQSDAL  225 (388)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999887777766553

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=90.74  E-value=1.3  Score=32.16  Aligned_cols=37  Identities=14%  Similarity=0.060  Sum_probs=31.1

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      ..+..+..+|..+-+.|+|++|+.+|..|++++-...
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~al   50 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVL   50 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            4567788899999999999999999999999865433

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.69  E-value=8  Score=35.38  Aligned_cols=101  Identities=9%  Similarity=0.013  Sum_probs=56.1

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHH-HHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC--HH------
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRK-YKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YK------  331 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~-y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~------  331 (414)
                      .+....++...+.|.++++|++|++. |.-|+.++....           ...-..+-..+..+|.+.+.  -+      
T Consensus        30 YEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q-----------~~sa~DLa~llvev~~~~~~~~~~~~~~rl   98 (312)
T 2wpv_A           30 YEAHQTLRTIANRYVRSKSYEHAIELISQGALSFLKAKQ-----------GGSGTDLIFYLLEVYDLAEVKVDDISVARL   98 (312)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----------HHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCCC-----------cchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            44556677788899999999999987 455555543211           11111111111122222111  00      


Q ss_pred             ------------HHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy793          332 ------------RAINLCDDILLM-------EPNNVKALFRRGRAQVSMNNFEQGLQDYE  372 (414)
Q Consensus       332 ------------~A~~~~~~al~~-------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~  372 (414)
                                  .-....+++++.       .-.++..|..+|..+..-+++.+|...|-
T Consensus        99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A           99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence                        112233333322       22467788889999999999999988774

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=87.84  E-value=1.7  Score=42.73  Aligned_cols=82  Identities=11%  Similarity=-0.032  Sum_probs=71.2

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      ....+...|....-+..+..|..+|.+|+.+                .|.....|.-+|.+....++.-+|+-+|.++|.
T Consensus       151 ~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~----------------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~  214 (497)
T 1ya0_A          151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQL----------------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHHHHHHHHh----------------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHh
Confidence            3456778999999999999999999999999                677778999999999999999999999999998


Q ss_pred             cCCCCHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVS  360 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~  360 (414)
                      .....+.|.-++...+..
T Consensus       215 ~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          215 VKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             SSBCCHHHHHHHHHHHHH
T ss_pred             cCCCChhHHHHHHHHHHH
Confidence            877788888777776654

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=87.44  E-value=11  Score=31.12  Aligned_cols=81  Identities=12%  Similarity=0.141  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----------------hC
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD-----------------LL  378 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~-----------------l~  378 (414)
                      -.+-++..+.-.|+|..|+-.+-     .-+...+.|..+.||..+++|..|+..+++.++                 ++
T Consensus        35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd  109 (242)
T 3kae_A           35 YRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVD  109 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCC
T ss_pred             HHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeec
Confidence            33456677778999998875432     335678899999999999999999999999993                 34


Q ss_pred             CCCHHHH-HHHHHHHHHHHHHHHH
Q psy793          379 PNDQQIL-KEIAFVRKQMRHHLNL  401 (414)
Q Consensus       379 P~~~~~~-~~l~~~~~~~~~~~~~  401 (414)
                      |.|.+.. ..++.+..+.+..++.
T Consensus       110 ~~DkEfFy~l~a~lltq~g~r~Ea  133 (242)
T 3kae_A          110 PGDEEFFESLLGDLCTLSGYREEG  133 (242)
T ss_dssp             TTCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhcCHHHh
Confidence            6676654 4556666666555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=84.51  E-value=3.7  Score=42.40  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDI  340 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~a  340 (414)
                      ..|.++|..+++.++++.|+.+|.++
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            46777777777788887777777765

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.46  E-value=9.8  Score=31.59  Aligned_cols=48  Identities=13%  Similarity=0.133  Sum_probs=41.7

Q ss_pred             HHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q psy793          324 QLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD  376 (414)
Q Consensus       324 ~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~  376 (414)
                      .+++|+++.|.+.++..     ++...|-++|......|+++-|..+|+++-.
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            35789999999988765     5788999999999999999999999998743

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=83.92  E-value=2.3  Score=43.94  Aligned_cols=18  Identities=6%  Similarity=-0.088  Sum_probs=11.5

Q ss_pred             HHHHcCCHHHHHHHHHHH
Q psy793          357 AQVSMNNFEQGLQDYEQA  374 (414)
Q Consensus       357 ~~~~lg~~~~A~~~~~~a  374 (414)
                      ++..+|++++|++.|.++
T Consensus       745 ~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          745 AYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHHHHTCHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHc
Confidence            455567777777766554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.48  E-value=7.7  Score=30.89  Aligned_cols=53  Identities=9%  Similarity=-0.068  Sum_probs=39.3

Q ss_pred             HhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q psy793          326 KFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       326 ~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~  378 (414)
                      ..++-++--+.+...+.-++.++..++.+|.+|.++|+..+|.+.+.+|.+.-
T Consensus       103 ~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A          103 IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            34444444444444455567789999999999999999999999999998854

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}

Probab=83.45  E-value=24  Score=32.87  Aligned_cols=118  Identities=11%  Similarity=0.091  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHHhhhHHhhhc---------CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793          259 QMEDVIRTIKNSGNEYFKLN---------RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA  329 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~---------~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~  329 (414)
                      -..+.+..+++.|-.+.+.+         ..+.|..+|++|--++...........-.++.+....++..++.+.-+.--
T Consensus       112 l~fE~a~VLfNiaal~s~~a~~~~r~~~~glK~A~~~fq~AAG~f~~l~~~~~~~~~~Dls~~~l~~L~~l~LAQAQE~~  191 (363)
T 3rau_A          112 IKYEQACILYNLGALHSMLGAMDKRVSEEGMKVSCTHFQCAAGAFAYLREHFPQAYSVDMSRQILTLNVNLMLGQAQECL  191 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHCCSCSSGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCCHHHHHHHHHHHHHHHHHHH
Confidence            35677888888888886543         468899999999887754432211111223344445555555444333333


Q ss_pred             HHHHH-----------------HHHHHHHhcC---C----------C------------CHHHHHHHHHHHHHcCCHHHH
Q psy793          330 YKRAI-----------------NLCDDILLME---P----------N------------NVKALFRRGRAQVSMNNFEQG  367 (414)
Q Consensus       330 ~~~A~-----------------~~~~~al~~~---p----------~------------~~~a~~~~g~~~~~lg~~~~A  367 (414)
                      |.+|+                 .+|++|...-   +          .            .+.|+|+.|......+++-+|
T Consensus       192 ~~Kai~~~~k~~liAkLa~q~~~~Y~~a~~~l~~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~Gea  271 (363)
T 3rau_A          192 LEKSMLDNRKSFLVARISAQVVDYYKEACRALENPDTASLLGRIQKDWKKLVQMKIYYFAAVAHLHMGKQAEEQQKFGER  271 (363)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhHHHH
Confidence            33332                 2333332210   0          0            134677777777777888888


Q ss_pred             HHHHHHHHh
Q psy793          368 LQDYEQALD  376 (414)
Q Consensus       368 ~~~~~~al~  376 (414)
                      +..++.|.+
T Consensus       272 Ia~L~~A~~  280 (363)
T 3rau_A          272 VAYFQSALD  280 (363)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            887777665

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=82.83  E-value=2.2  Score=41.93  Aligned_cols=71  Identities=7%  Similarity=0.036  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC--CC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          312 YYTAALLNMAAVQLKFKAYKRAINLCDDILLMEP--NN---VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       312 ~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p--~~---~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      ....++.-+-..|+..+.|+.|.....++.--..  .+   ..-+|..|.++..+++|.+|..++..|+...|.+.
T Consensus       229 ~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~  304 (523)
T 4b4t_S          229 TKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS  304 (523)
T ss_dssp             HHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred             hhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence            3356777788899999999999999999953221  12   34567789999999999999999999999988653

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.54  E-value=13  Score=27.02  Aligned_cols=40  Identities=10%  Similarity=0.116  Sum_probs=33.2

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS  300 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~  300 (414)
                      +..|..+--++..+.+.|.|++||++..+|..++...-..
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkl   51 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL   51 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence            3457778889999999999999999999999987654433

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.54  E-value=13  Score=28.44  Aligned_cols=77  Identities=10%  Similarity=0.090  Sum_probs=57.8

Q ss_pred             HHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccC------CcHHHHHhhHHHHHHHHHHHHHHHHHhhCH
Q psy793          257 LNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQS------QSKTQQKHFRSYYTAALLNMAAVQLKFKAY  330 (414)
Q Consensus       257 ~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~------~~~~~~~~~~~~~~~~~~nla~~~~~l~~~  330 (414)
                      .....+.|..+.+.|...=..|+-+.|+.+|++.|..+......      ...+.+.....+......||..+..+++..
T Consensus        15 ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~L   94 (116)
T 2dl1_A           15 IREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEIL   94 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667788888899998888999999999999999988644321      235566666667777778888887777655


Q ss_pred             HHH
Q psy793          331 KRA  333 (414)
Q Consensus       331 ~~A  333 (414)
                      ...
T Consensus        95 e~~   97 (116)
T 2dl1_A           95 EKG   97 (116)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=80.34  E-value=12  Score=30.96  Aligned_cols=27  Identities=15%  Similarity=0.012  Sum_probs=16.7

Q ss_pred             HHHHhhhHHhhhcCHHHHHHHHHHHHH
Q psy793          266 TIKNSGNEYFKLNRMHDAQRKYKKAVR  292 (414)
Q Consensus       266 ~~~~~G~~~~~~~~~~~A~~~y~~Al~  292 (414)
                      .++..|...+..|+++-|..+|.++=.
T Consensus        36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           36 TWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            356666666666666666666655443

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A

Probab=80.24  E-value=15  Score=34.61  Aligned_cols=118  Identities=16%  Similarity=0.161  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHhhhHHhhhc------------CHHHHHHHHHHHHHHHHhhccCCcH------HHHHhhHHHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLN------------RMHDAQRKYKKAVRYIKWYNQSQSK------TQQKHFRSYYTAALLNMA  321 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~------------~~~~A~~~y~~Al~~~~~~~~~~~~------~~~~~~~~~~~~~~~nla  321 (414)
                      ..+.+..+++.|-.+.+.+            ..+.|..+|++|--++.........      +...++.+....++..++
T Consensus       110 ~fE~a~VLfNiaal~sq~A~~~~~~~r~~~e~lK~A~~~fq~AAG~f~~l~~~~~~~~~~~~~~~~Dls~~~l~~L~~l~  189 (376)
T 3r9m_A          110 VFELISMGFNVALWYTKYASRLAGKENITEDEAKEVHRSLKIAAGIFKHLKESHLPKLITPAEKGRDLESRLIEAYVIQC  189 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTGGGCSSCCCTTSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCcccCHHHHHHHHHHH
Confidence            5567788888777765432            3688889999998777543321110      112233455555555555


Q ss_pred             HHHHHhhCHHHHH-----------------HHHHHHHhc-CC-------C------------CHHHHHHHHHHHHHcCCH
Q psy793          322 AVQLKFKAYKRAI-----------------NLCDDILLM-EP-------N------------NVKALFRRGRAQVSMNNF  364 (414)
Q Consensus       322 ~~~~~l~~~~~A~-----------------~~~~~al~~-~p-------~------------~~~a~~~~g~~~~~lg~~  364 (414)
                      .+.-+.--|.+|+                 ++|++|... ..       .            .+.|+|+.|..+...+++
T Consensus       190 LAQAQE~~~~Kai~~~~k~~liAKLa~q~~~~Y~~a~~~l~~~~~~i~~~W~~~v~~K~~~~~A~A~y~~a~~~~~~~k~  269 (376)
T 3r9m_A          190 QAEAQEVTIARAIELKHAPGLIAALAYETANFYQKADHTLSSLEPAYSAKWRKYLHLKMCFYTAYAYCYHGETLLASDKC  269 (376)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCh
Confidence            4433332233222                 244444432 11       0            145777888888888999


Q ss_pred             HHHHHHHHHHHhh
Q psy793          365 EQGLQDYEQALDL  377 (414)
Q Consensus       365 ~~A~~~~~~al~l  377 (414)
                      -+|+..++.|.+.
T Consensus       270 GeaIa~L~~A~~~  282 (376)
T 3r9m_A          270 GEAIRSLQEAEKL  282 (376)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9988888887664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	414
d1ihga2	195	b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain	4e-44
d2igva1	172	b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caeno	2e-39
d1a33a_	174	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (	3e-38
d1qnga_	170	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium	4e-38
d2cfea1	162	b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s	5e-38
d2z6wa1	164	b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl c	1e-36
d2rmca_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus	9e-34
d1h0pa_	182	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabd	4e-33
d1xo7a_	166	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosom	4e-33
d2c3ba1	171	b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Asper	1e-31
d2r99a1	161	b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl	4e-31
d1qoia_	173	b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Hom	9e-31
d1z81a1	186	b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plas	2e-29
d1xwna1	166	b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isome	2e-27
d1zkca1	178	b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans iso	4e-27
d2ok3a1	159	b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B	3e-21
d1w74a_	171	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-20
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	3e-19
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-17
d2fu0a1	155	b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {	5e-17
d2a2na1	164	b.62.1.1 (A:483-646) Peptidylprolyl isomerase doma	3e-16
d1v9ta_	166	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-15
d2b71a1	169	b.62.1.1 (A:23-191) Cyclophilin-like protein PY006	4e-15
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	7e-15
d1lopa_	164	b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	1e-13
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	6e-12
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	9e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-04
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-09
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	9e-08
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	1e-07
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-06
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	6e-06
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	2e-05
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	4e-05
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	8e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.004
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	9e-04
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	0.003

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]} Length = 195

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  150 bits (379), Expect = 4e-44
 Identities = 114/230 (49%), Positives = 129/230 (56%), Gaps = 46/230 (20%)

Query: 7   KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGS 65
              N  VF DV IG E+VGR+V+ELF  IVPKTAENFRALCTGE G G   GK LHF G 
Sbjct: 11  NPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGC 70

Query: 66  RFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDI 125
            FHRII +FMIQGGD +N NGTGGESIYG  FEDENF  K                    
Sbjct: 71  PFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYK-------------------- 110

Query: 126 TNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKN 185
                                   H  EG LS+AN G  NTN SQFFIT  P PHLDGK+
Sbjct: 111 ------------------------HDKEGLLSMANAGS-NTNGSQFFITTVPTPHLDGKH 145

Query: 186 VVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAEND 235
           VVFG V +G GVA+ +  VE + +KP   C I   G+L   +DWG+   D
Sbjct: 146 VVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFPKD 195

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]} Length = 172

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

 Score =  136 bits (344), Expect = 2e-39
 Identities = 98/214 (45%), Positives = 116/214 (54%), Gaps = 45/214 (21%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
              VF D++IG +  GR+V+EL+  +VPKTA NFRALCTGE G GK GK LHF GS+FHR
Sbjct: 3   RSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHR 62

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           IIP FMIQGGD T  NGTGGESIYG  F DENFK K                        
Sbjct: 63  IIPNFMIQGGDFTRGNGTGGESIYGEKFPDENFKEKHTG--------------------- 101

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                                   G LS+AN G PNTN SQFF+       LDGK+VVFG
Sbjct: 102 -----------------------PGVLSMANAG-PNTNGSQFFLCTVKTEWLDGKHVVFG 137

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
            V +G  V + V    +++ KP+  C I + GQL
Sbjct: 138 RVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQL 171

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]} Length = 174

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

 Score =  133 bits (336), Expect = 3e-38
 Identities = 88/213 (41%), Positives = 110/213 (51%), Gaps = 47/213 (22%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKL-GKALHFTGSRFHRII 71
           VFLDV+I     GR+V+EL+  I P+T  NF  LCTG  G GK+ GK LH+ GS      
Sbjct: 6   VFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGST----- 60

Query: 72  PQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGT 131
                                                  FHR+I  FMIQGGD T  +GT
Sbjct: 61  ---------------------------------------FHRVIKNFMIQGGDFTKGDGT 81

Query: 132 GGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCV 191
           GGESIYG  F+DE F +KH     +S+AN G PNTN SQFFIT  P PHL+  +VVFG V
Sbjct: 82  GGESIYGGMFDDEEFVMKHDEPFVVSMANKG-PNTNGSQFFITTTPAPHLNNIHVVFGKV 140

Query: 192 RQGFGVAREVSYVEA-ENDKPLVTCTITNSGQL 223
             G  V  ++ Y++    ++PL    I N G+L
Sbjct: 141 VSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL 173

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]} Length = 170

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

 Score =  133 bits (336), Expect = 4e-38
 Identities = 97/211 (45%), Positives = 116/211 (54%), Gaps = 46/211 (21%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D+SI     GR++ ELF  I P+T ENFRALCTGE    + GK LH+          
Sbjct: 6   VFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIGSR-GKNLHYK--------- 55

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                              +  FHRIIPQFM QGGDITN NG+G
Sbjct: 56  -----------------------------------NSIFHRIIPQFMCQGGDITNGNGSG 80

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           GESIYG  F DENF +KH   G LS+AN G PNTN+SQFFITL PCP LDGK+VVFG V 
Sbjct: 81  GESIYGRSFTDENFNMKHDQPGLLSMANAG-PNTNSSQFFITLVPCPWLDGKHVVFGKVI 139

Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSGQL 223
           +G  V RE+    A++     +  IT+ G+L
Sbjct: 140 EGMNVVREMEKEGAKSGYVKRSVVITDCGEL 170

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]} Length = 162

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

 Score =  132 bits (334), Expect = 5e-38
 Identities = 83/209 (39%), Positives = 102/209 (48%), Gaps = 52/209 (24%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF D++     +G +  +LF  +VPKTA NFRALCTGE G G                  
Sbjct: 4   VFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGFG------------------ 45

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                      + G+                      +FHR+IP FM+QGGD T  NGTG
Sbjct: 46  -----------YAGS----------------------HFHRVIPDFMLQGGDFTAGNGTG 72

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G+SIYG  F DENF+LKH   G LS+AN G PNTN SQFFIT      LDGK+VVFG V 
Sbjct: 73  GKSIYGAKFADENFQLKHNKPGLLSMANAG-PNTNGSQFFITTVVTSWLDGKHVVFGEVI 131

Query: 193 QGFGVAREVSYVEAENDKPLVTCTITNSG 221
            G  V + +    + + KP     I   G
Sbjct: 132 DGMNVVKAIEAEGSGSGKPRSRIEIAKCG 160

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 1e-36
 Identities = 89/216 (41%), Positives = 111/216 (51%), Gaps = 52/216 (24%)

Query: 9   GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFH 68
           GN +V+LDV    + +GR+V+EL   +VPKTAENFRALCTGE G                
Sbjct: 1   GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGF--------------- 45

Query: 69  RIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNF 128
                          + G+                       FHR+IP FM Q GD TN 
Sbjct: 46  --------------GYKGS----------------------TFHRVIPSFMCQAGDFTNH 69

Query: 129 NGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVF 188
           NGTGG+SIYG  F DENF LKH   G LS+AN G PNTN SQFFI       LDGK+VVF
Sbjct: 70  NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNGSQFFICTIKTDWLDGKHVVF 128

Query: 189 GCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           G V +G  V +++    +++ +      IT+ GQLS
Sbjct: 129 GHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 164

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

 Score =  122 bits (307), Expect = 9e-34
 Identities = 94/224 (41%), Positives = 113/224 (50%), Gaps = 53/224 (23%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           VF DV IG++ VGR+VI LF ++VPKT ENF AL TGE G G  G               
Sbjct: 10  VFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKG--------------- 54

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                                                 FHR+I  FMIQGGD T  +GTG
Sbjct: 55  ------------------------------------SIFHRVIKDFMIQGGDFTARDGTG 78

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G SIYG  F DENFKLKH   G +S+AN G P+TN SQFFITL     LDGK+VVFG V 
Sbjct: 79  GMSIYGETFPDENFKLKHYGIGWVSMANAG-PDTNGSQFFITLTKPTWLDGKHVVFGKVL 137

Query: 193 QGFGVAREVSYVEAE-NDKPLVTCTITNSGQLSLNEDWGVAEND 235
            G  V   +     + +D+PL  CTI NSG++ +   + V   D
Sbjct: 138 DGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVVEVPD 181

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]} Length = 182

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

 Score =  120 bits (302), Expect = 4e-33
 Identities = 82/222 (36%), Positives = 105/222 (47%), Gaps = 53/222 (23%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D+ IG + +GR+VI LF   VPKTA NF  L     G+G                  
Sbjct: 9   VYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKPKGEG------------------ 50

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
                      + G                        FHR+I  FMIQGGD T  +GTG
Sbjct: 51  -----------YPG----------------------SKFHRVIADFMIQGGDFTRGDGTG 77

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
           G SIYG  F DENFKLKH   G LS+AN G  +TN SQFFIT    P LDG++VVFG + 
Sbjct: 78  GRSIYGEKFADENFKLKHYGAGWLSMANAG-ADTNGSQFFITTVKTPWLDGRHVVFGKIL 136

Query: 193 QGFGVAREVSYVE-AENDKPLVTCTITNSGQLSLNEDWGVAE 233
           +G  V R++   E    D+P     I  SG ++++  + V  
Sbjct: 137 EGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSVER 178

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  120 bits (301), Expect = 4e-33
 Identities = 88/212 (41%), Positives = 112/212 (52%), Gaps = 54/212 (25%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+ D++IG+E VGR+VI LF + VPKT ENF+ L +GE G G       + GS FHR+I 
Sbjct: 8   VYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVIR 60

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
            FMIQGGD TNF+GTGG+SIYG  F+DEN K                             
Sbjct: 61  NFMIQGGDFTNFDGTGGKSIYGTRFDDENLK----------------------------- 91

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
                              F G +S+AN G PN+N SQFF+T AP P LDG++VVFG V 
Sbjct: 92  ----------------IKHFVGAVSMANAG-PNSNGSQFFVTTAPTPWLDGRHVVFGKVV 134

Query: 193 QGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
           +G  V ++V   +   NDKP     I + G L
Sbjct: 135 EGMDVVKKVENTKTGLNDKPKKAVKINDCGVL 166

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

 Score =  116 bits (290), Expect = 1e-31
 Identities = 86/220 (39%), Positives = 99/220 (45%), Gaps = 61/220 (27%)

Query: 13  VFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
           VF DV        E KVGR+V  LF   VPKTA+NFR LC    G+G             
Sbjct: 4   VFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEGYRE---------- 53

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
                                                      FHRIIP FMIQGGD T 
Sbjct: 54  -----------------------------------------STFHRIIPNFMIQGGDFTR 72

Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVV 187
            NGTGG SIYG  F DENF  KH  +G LS+AN G PNTN SQFFIT A    LDGK+VV
Sbjct: 73  GNGTGGRSIYGDKFADENFSRKHDKKGILSMANAG-PNTNGSQFFITTAVTSWLDGKHVV 131

Query: 188 FGCVRQGFG--VAREVSYVEAEN--DKPLVTCTITNSGQL 223
           FG V       V +E+  + + +   +      I N G+L
Sbjct: 132 FGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL 171

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (286), Expect = 4e-31
 Identities = 87/213 (40%), Positives = 108/213 (50%), Gaps = 52/213 (24%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N  V++D+ IG +  GR+ + L   +VP TAENFR LCT E       K   F GS    
Sbjct: 1   NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHE-------KGFGFKGS---- 49

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHRIIPQFM QGGD TN N
Sbjct: 50  ----------------------------------------SFHRIIPQFMCQGGDFTNHN 69

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           GTGG+SIYG  F+DENF LKH   G LS+AN+G PNTN SQFF+T      LDGK+VVFG
Sbjct: 70  GTGGKSIYGKKFDDENFILKHTGPGLLSMANSG-PNTNGSQFFLTCDKTDWLDGKHVVFG 128

Query: 190 CVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ 222
            V +G  V R++    +++ KP     I + G+
Sbjct: 129 EVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE 161

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]} Length = 173

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

 Score =  114 bits (285), Expect = 9e-31
 Identities = 91/215 (42%), Positives = 114/215 (53%), Gaps = 48/215 (22%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N +VF DVSIG ++VGRM IELF  +VPKTAENFR  CTGE+ K   G  + + GS FHR
Sbjct: 6   NPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFRKD--GVPIGYKGSTFHR 63

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
           +I  FMIQGGD  N +GTG  SIY   F DENFKL+                        
Sbjct: 64  VIKDFMIQGGDFVNGDGTGVASIYRGPFADENFKLR------------------------ 99

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
                               H   G LS+AN+G P+TN  QFFIT + C  LDGK+VVFG
Sbjct: 100 --------------------HSAPGLLSMANSG-PSTNGCQFFITCSKCDWLDGKHVVFG 138

Query: 190 CVRQGFGVAREVSYVE-AENDKPLVTCTITNSGQL 223
            +  G  V R++  V    N+KP +   I+  G++
Sbjct: 139 KIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM 173

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]} Length = 186

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

 Score =  111 bits (277), Expect = 2e-29
 Identities = 80/218 (36%), Positives = 108/218 (49%), Gaps = 51/218 (23%)

Query: 10  NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHR 69
           N +VF+D+++G   +G+   ELF++IVPKT+ENFR  CTGEY        + +  +    
Sbjct: 16  NPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTI--- 70

Query: 70  IIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFN 129
                                                    FHR+I +FMIQGGD  N N
Sbjct: 71  -----------------------------------------FHRVIKEFMIQGGDFINHN 89

Query: 130 GTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFG 189
           G+G  SIYG  F+DENF +KH  EG LS+AN+G PNTN  QFFIT   C  LDGKNVVFG
Sbjct: 90  GSGSLSIYGEKFDDENFDIKHDKEGLLSMANSG-PNTNGCQFFITTKKCEWLDGKNVVFG 148

Query: 190 CVRQGFG--VAREVSYVE--AENDKPLVTCTITNSGQL 223
            +       + +++  V       KP +   +   G+L
Sbjct: 149 RIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL 186

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-27
 Identities = 73/209 (34%), Positives = 92/209 (44%), Gaps = 61/209 (29%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
           V+L+ S+G      +V+EL+    PKT +NF  L    Y  G           +FHRII 
Sbjct: 14  VYLETSMG-----IIVLELYWKHAPKTCKNFAELARRGYYNGT----------KFHRIIK 58

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
            FMIQGGD T   G GG SIYG  FEDE                                
Sbjct: 59  DFMIQGGDPTG-TGRGGASIYGKQFEDEL------------------------------- 86

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
                       +  LK    G L++AN G P+TN SQFF+TLAP   LDGK+ +FG V 
Sbjct: 87  ------------HPDLKFTGAGILAMANAG-PDTNGSQFFVTLAPTQWLDGKHTIFGRVC 133

Query: 193 QGFGVAREVSYVE-AENDKPLVTCTITNS 220
           QG G+   V  VE    D+P+    I  +
Sbjct: 134 QGIGMVNRVGMVETNSQDRPVDDVKIIKA 162

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]} Length = 178

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (260), Expect = 4e-27
 Identities = 66/197 (33%), Positives = 83/197 (42%), Gaps = 57/197 (28%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + +EL   + PKT ENF  LC   Y          + G+ FHR I  F+IQGGD T  
Sbjct: 10  GDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG- 58

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
            GTGGES +G  F+DE                                            
Sbjct: 59  TGTGGESYWGKPFKDEF------------------------------------------- 75

Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYV 204
              L H   G LS+AN+G PN+N SQFFIT   C +LD K+ +FG V  GF V   +  V
Sbjct: 76  RPNLSHTGRGILSMANSG-PNSNRSQFFITFRSCAYLDKKHTIFGRVVGGFDVLTAMENV 134

Query: 205 E--AENDKPLVTCTITN 219
           E   + D+P     I  
Sbjct: 135 ESDPKTDRPKEEIRIDA 151

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (216), Expect = 3e-21
 Identities = 66/198 (33%), Positives = 81/198 (40%), Gaps = 57/198 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           VG + IE+F    PKT ENF ALC           + ++ G  FHR I  FM+Q GD   
Sbjct: 9   VGDIKIEVFCERTPKTCENFLALC----------ASNYYNGCIFHRNIKGFMVQTGDP-T 57

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG SI+G  FEDE                                           
Sbjct: 58  GTGRGGNSIWGKKFEDEY------------------------------------------ 75

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
            +  LKH   G +S+AN G PNTN SQFFIT    PHLD K  VFG V  G     E+  
Sbjct: 76  -SEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQPHLDMKYTVFGKVIDGLETLDELEK 133

Query: 204 VE--AENDKPLVTCTITN 219
           +    +  +PL    I +
Sbjct: 134 LPVNEKTYRPLNDVHIKD 151

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 86.1 bits (212), Expect = 1e-20
 Identities = 53/198 (26%), Positives = 75/198 (37%), Gaps = 46/198 (23%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G + I LF +  PKT  NF  L  G         +   +G                   +
Sbjct: 13  GDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSG-----------------PFY 55

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
           +G                        FHR+I  FMIQGGD     GTG         ++ 
Sbjct: 56  DGA----------------------VFHRVIQGFMIQGGD---PTGTGRGGPGYKFADEF 90

Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFG--VAREVS 202
           + +L+      L++AN G P TN SQFFIT+   PHL+ ++ +FG V       V   +S
Sbjct: 91  HPELQFDKPYLLAMANAG-PGTNGSQFFITVGKTPHLNRRHTIFGEVIDAESQRVVEAIS 149

Query: 203 YVE-AENDKPLVTCTITN 219
                 ND+P     I +
Sbjct: 150 KTATDGNDRPTDPVVIES 167

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 3e-19
 Identities = 47/171 (27%), Positives = 92/171 (53%), Gaps = 2/171 (1%)

Query: 236 GSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIK 295
           GS D +P FPED   + +   ++++  +   +KN GN +FK      A +KY K +RY++
Sbjct: 1   GSGDSHPDFPEDADVDLK--DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE 58

Query: 296 WYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG 355
               +         +    + +LN+ A +LK   ++ A++ C + L ++P+N KAL+RR 
Sbjct: 59  GSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRA 118

Query: 356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTY 406
           +    +  ++Q L D ++A ++ P D+ I  E+  V+++++   + EK  Y
Sbjct: 119 QGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 77.3 bits (189), Expect = 2e-17
 Identities = 49/161 (30%), Positives = 81/161 (50%), Gaps = 3/161 (1%)

Query: 253 ETVQLNQME--DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFR 310
           E+ +++  E  +    +K  G  YFK  +   A  +Y K            S+ + K   
Sbjct: 2   ESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKI-VSWLEMEYGLSEKESKASE 60

Query: 311 SYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQD 370
           S+  AA LN+A   LK + Y +A+  CD  L ++  N K L+RRG AQ+ MN FE    D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 371 YEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ 411
           +E+ L++ P ++    +I   +K+ + H   ++ TYA MF+
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]} Length = 155

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

 Score = 75.7 bits (185), Expect = 5e-17
 Identities = 59/197 (29%), Positives = 76/197 (38%), Gaps = 56/197 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G + I LF     KT +NF                 ++    FHR+I  FM+Q GD + 
Sbjct: 10  MGDIHISLFYKECKKTVQNFSVHSING----------YYNNCIFHRVIKHFMVQTGDPSG 59

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
                                                         GTGGESI+G  FED
Sbjct: 60  D---------------------------------------------GTGGESIWGNEFED 74

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
           E F   +  +  +       PNTN SQFFIT  PCP LD K+ VFG V QG  +  ++  
Sbjct: 75  EFFDHLNHSKPFMVSMANCGPNTNGSQFFITTVPCPWLDFKHTVFGKVTQGSKIVLDIEK 134

Query: 204 VEA-ENDKPLVTCTITN 219
           V   + DKPL    I N
Sbjct: 135 VRTDKRDKPLEDIKILN 151

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.8 bits (180), Expect = 3e-16
 Identities = 68/209 (32%), Positives = 87/209 (41%), Gaps = 57/209 (27%)

Query: 13  VFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIP 72
              D +I    +G +  +LF    PKT ENF              +  ++ G  FHRII 
Sbjct: 7   RVSDSAIIHTSMGDIHTKLFPVECPKTVENFCVHS----------RNGYYNGHTFHRIIK 56

Query: 73  QFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTG 132
            FMIQ GD T     GGESI+G  FEDE                                
Sbjct: 57  GFMIQTGDPTGTGM-GGESIWGGEFEDE-------------------------------- 83

Query: 133 GESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVR 192
                       +  L+H     LS+AN G  NTN SQFFIT+ P P LD K+ VFG V 
Sbjct: 84  -----------FHSTLRHDRPYTLSMANAGS-NTNGSQFFITVVPTPWLDNKHTVFGRVT 131

Query: 193 QGFGVAREVSYVE--AENDKPLVTCTITN 219
           +G  V + +S V+   + DKP    +I N
Sbjct: 132 KGMEVVQRISNVKVNPKTDKPYEDVSIIN 160

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 166

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 48/226 (21%), Positives = 71/226 (31%), Gaps = 72/226 (31%)

Query: 8   EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRF 67
           +G+  V L  S      G + +EL K   P + +NF                  +  + F
Sbjct: 2   KGDPHVLLTTS-----AGNIELELDKQKAPVSVQNFVDYVNSG----------FYNNTTF 46

Query: 68  HRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITN 127
           HR+IP FMIQGG  T                                             
Sbjct: 47  HRVIPGFMIQGGGFTEQMQQK--------------------------------------- 67

Query: 128 FNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLD----- 182
                      P  ++E         G +++A T   ++  SQFFI +A    LD     
Sbjct: 68  --------KPNPPIKNEADNGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRD 119

Query: 183 GKNVVFGCVRQGFGVAREVSYVEAE-----NDKPLVTCTITNSGQL 223
               VFG V +G  VA ++S V         + P     I ++  L
Sbjct: 120 FGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL 165

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]} Length = 169

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

 Score = 70.6 bits (172), Expect = 4e-15
 Identities = 56/199 (28%), Positives = 78/199 (39%), Gaps = 56/199 (28%)

Query: 24  VGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITN 83
           +G   +EL+ +  PKT  NF  LC   +    +              +    +  G    
Sbjct: 25  LGDFEVELYWYHSPKTCLNFYTLCEMGFYDNTI-----------FHRVIPNFVIQGGDPT 73

Query: 84  FNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED 143
             G GG+SIYG  FEDE                                           
Sbjct: 74  GTGKGGKSIYGEYFEDE------------------------------------------- 90

Query: 144 ENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSY 203
            N +LKH   G LS++N G PNTN+SQFFITLAP PHLDGK+ +F  V +       ++ 
Sbjct: 91  INKELKHTGAGILSMSNNG-PNTNSSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIAS 149

Query: 204 VE-AENDKPLVTCTITNSG 221
           V+    +KP+    I  + 
Sbjct: 150 VQTTATNKPIFDLKILRTS 168

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (170), Expect = 7e-15
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 6/165 (3%)

Query: 248 WKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQK 307
           W+ N E     +  +    +K  G  YFK  +   A  +YKK V ++  Y  S S  + +
Sbjct: 2   WEMNSE-----EKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWL-EYESSFSNEEAQ 55

Query: 308 HFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQG 367
             ++   A+ LN+A   LK +A+  AI  C+  L ++ NN K L RRG A +++N+FE  
Sbjct: 56  KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELA 115

Query: 368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 412
             D+++ L L PN++    ++A  ++++R  L  EK  YA MF+ 
Sbjct: 116 RADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER 160

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]} Length = 164

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

 Score = 66.1 bits (160), Expect = 1e-13
 Identities = 37/208 (17%), Positives = 56/208 (26%), Gaps = 70/208 (33%)

Query: 25  GRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNF 84
           G +VI+ F    P+T +NF   C          +   +  + FHR+I  FMIQGG     
Sbjct: 9   GDIVIKTFDDKAPETVKNFLDYC----------REGFYNNTIFHRVINGFMIQGGGFEPG 58

Query: 85  NGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE 144
                                                                    ++E
Sbjct: 59  MKQK-----------------------------------------------ATKEPIKNE 71

Query: 145 NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPC--------PHLDGKNVVFGCVRQGFG 196
                    G L++A T  P++  +QFFI +                   VF  V  G  
Sbjct: 72  ANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDFLNFSGESLQGWGYCVFAEVVDGMD 131

Query: 197 VAREVSYVE-----AENDKPLVTCTITN 219
              ++  V         D P     I +
Sbjct: 132 EVDKIKGVATGRSGMHQDVPKEDVIIES 159

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 61.2 bits (147), Expect = 6e-12
 Identities = 36/138 (26%), Positives = 66/138 (47%)

Query: 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 318
           +       IK  GNE+FK N +++A  KYK+A+ +     +   +      ++   +  L
Sbjct: 12  EKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 71

Query: 319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378
           N+A    K K Y +AI+    +L ++ NNVKAL++ G A +     E+  ++  +A  L 
Sbjct: 72  NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 131

Query: 379 PNDQQILKEIAFVRKQMR 396
           PN+  I         +++
Sbjct: 132 PNNLDIRNSYELCVNKLK 149

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 9e-10
 Identities = 20/127 (15%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N  N   +   + +A+  Y  A+R    +  S                  N+A ++ +  
Sbjct: 276 NLANALKEKGSVAEAEDCYNTALRLCPTHADSL----------------NNLANIKREQG 319

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
             + A+ L    L + P    A              ++ L  Y++A+ + P        +
Sbjct: 320 NIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNM 379

Query: 389 AFVRKQM 395
               K+M
Sbjct: 380 GNTLKEM 386

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 4e-09
 Identities = 11/96 (11%), Positives = 27/96 (28%)

Query: 317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALD 376
            + +A  + +   ++ A   C  +   EP+N   L             ++       A+ 
Sbjct: 2   PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61

Query: 377 LLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN 412
             P   +    +  V K+        +     +   
Sbjct: 62  QNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK 97

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 16/130 (12%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N    Y++   +  A   Y++A+                  + ++  A  N+A    +  
Sbjct: 242 NLACVYYEQGLIDLAIDTYRRAIEL----------------QPHFPDAYCNLANALKEKG 285

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
           +   A +  +  L + P +  +L      +    N E+ ++ Y +AL++ P        +
Sbjct: 286 SVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNL 345

Query: 389 AFVRKQMRHH 398
           A V +Q    
Sbjct: 346 ASVLQQQGKL 355

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 28/240 (11%), Positives = 60/240 (25%), Gaps = 9/240 (3%)

Query: 165 NTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS 224
           N   ++ +  L       G+        +     +        N    +       G + 
Sbjct: 63  NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQ 122

Query: 225 LNEDWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQ 284
                     D                            I T  N    +  L  + +AQ
Sbjct: 123 AYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQ 182

Query: 285 RKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME 344
            +   A+ + +                 +  A +N+  V  + + + RA+      L + 
Sbjct: 183 GEIWLAIHHFEKAVTLDPN---------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233

Query: 345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKM 404
           PN+                 +  +  Y +A++L P+       +A   K+       E  
Sbjct: 234 PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDC 293

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 22/139 (15%), Positives = 43/139 (30%), Gaps = 9/139 (6%)

Query: 260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLN 319
            E  +    N  + Y  L  +    R + +AV                     +     N
Sbjct: 192 FEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS---------LSPNHAVVHGN 242

Query: 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379
           +A V  +      AI+     + ++P+   A      A     +  +    Y  AL L P
Sbjct: 243 LACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP 302

Query: 380 NDQQILKEIAFVRKQMRHH 398
                L  +A ++++  + 
Sbjct: 303 THADSLNNLANIKREQGNI 321

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 5e-04
 Identities = 10/94 (10%), Positives = 25/94 (26%), Gaps = 16/94 (17%)

Query: 271 GNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAY 330
            +  ++      A+R   +  R                     T  LL ++++  + +  
Sbjct: 6   AHREYQAGDFEAAERHCMQLWRQ----------------EPDNTGVLLLLSSIHFQCRRL 49

Query: 331 KRAINLCDDILLMEPNNVKALFRRGRAQVSMNNF 364
            R+ +     +   P   +A    G         
Sbjct: 50  DRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.4 bits (127), Expect = 6e-09
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
           +K  GN  F   +  +A   Y +A+                           N A   LK
Sbjct: 7   LKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLK 50

Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
            +  ++A+  C   L ++  +VKA F  G+ Q+ M ++++ + + ++A  L    +    
Sbjct: 51  MQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG 110

Query: 387 EIAFVRKQMRHHLNLEKMTYARMFQN 412
           +      ++        +   R+ Q 
Sbjct: 111 DDIPSALRIAKKKRWNSIEERRIHQE 136

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 9e-08
 Identities = 20/129 (15%), Positives = 40/129 (31%), Gaps = 10/129 (7%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
           K  GN+ +K      A + Y KA           +     +F                  
Sbjct: 8   KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCR--------- 58

Query: 328 KAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE 387
           +  ++AI +  +         KA  R G +      ++  +  Y ++L        +LK+
Sbjct: 59  ELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLA-EHRTPDVLKK 117

Query: 388 IAFVRKQMR 396
                K ++
Sbjct: 118 CQQAEKILK 126

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 1e-07
 Identities = 19/139 (13%), Positives = 42/139 (30%), Gaps = 22/139 (15%)

Query: 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 318
            ME V+       NE   +  +   ++K++               TQ ++          
Sbjct: 1   HMEAVL-------NELVSVEDLLKFEKKFQSEKAA----GSVSKSTQFEYAWCLVRTRYN 49

Query: 319 NMAAVQLKFKAYKRAINLCDDILLMEPNN--VKALFRRGRAQVSMNNFEQGLQDYEQALD 376
           +           ++ I L +++L           +F        +  +E+ L+     L 
Sbjct: 50  DD---------IRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 100

Query: 377 LLPNDQQILKEIAFVRKQM 395
             P + Q  +    + K M
Sbjct: 101 TEPQNNQAKELERLIDKAM 119

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 1e-06
 Identities = 15/143 (10%), Positives = 45/143 (31%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
           N G  Y  L  M +A++ + +++   K    +  +    ++++      +      L   
Sbjct: 41  NIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL 100

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEI 388
              + I+     L  +    + L+           +++  +    A  +    +    + 
Sbjct: 101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 160

Query: 389 AFVRKQMRHHLNLEKMTYARMFQ 411
           A      +       +   R+F+
Sbjct: 161 AMECVWKQKLYEPVVIPVGRLFR 183

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 6e-06
 Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 16/133 (12%)

Query: 262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMA 321
           + +  +K  GN+   +  + DA + Y +A++     +   S     + +           
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDG 60

Query: 322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND 381
              +  K             L                  +N FE+  + YE+ L    N+
Sbjct: 61  CKTVDLKPDWGKGYSRKAAALEF----------------LNRFEEAKRTYEEGLKHEANN 104

Query: 382 QQILKEIAFVRKQ 394
            Q+ + +  +  +
Sbjct: 105 PQLKEGLQNMEAR 117

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 8/144 (5%), Positives = 40/144 (27%), Gaps = 15/144 (10%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF 327
            +            +A    ++A+      + +    +      +       +A      
Sbjct: 13  LSDAQRQLVAGEYDEAAANCRRAMEI----SHTMPPEEAFDHAGFDAFCHAGLAEALAGL 68

Query: 328 KAYKRAINLCDDILLMEPNNVKAL-----------FRRGRAQVSMNNFEQGLQDYEQALD 376
           +++  A++  D  L       +             + R  A   +    + + ++++ ++
Sbjct: 69  RSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128

Query: 377 LLPNDQQILKEIAFVRKQMRHHLN 400
           ++   +        + +     + 
Sbjct: 129 MIEERKGETPGKERMMEVAIDRIA 152

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 22/130 (16%), Positives = 52/130 (40%), Gaps = 16/130 (12%)

Query: 267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK 326
           +K   N+YFK        + Y+ A+++     +        +          N +   L+
Sbjct: 13  LKTQANDYFK-------AKDYENAIKFYSQAIELNPSNAIYYG---------NRSLAYLR 56

Query: 327 FKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILK 386
            + Y  A+      + ++   +K  +RR  + +++  F   L+DYE  + + P+D+    
Sbjct: 57  TECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKM 116

Query: 387 EIAFVRKQMR 396
           +     K ++
Sbjct: 117 KYQECNKIVK 126

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 2e-04
 Identities = 10/112 (8%), Positives = 28/112 (25%), Gaps = 18/112 (16%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
             G    K        +    +  YI                      L+++  +     
Sbjct: 125 QLGIISNKQTHTSAIVKPQSSSCSYI------------------CQHCLVHLGDIARYRN 166

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN 380
              +A +       + P+N +   +      S  +    +  Y +++ +   
Sbjct: 167 QTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP 218

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 8e-04
 Identities = 16/141 (11%), Positives = 33/141 (23%), Gaps = 10/141 (7%)

Query: 268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQ--KHFRSYY------TAALLN 319
           KN         +      + +       +   +     Q  +   + +            
Sbjct: 66  KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQ 125

Query: 320 MAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP 379
           +  +  K       +                L   G      N   Q    Y  A  L+P
Sbjct: 126 LGIISNKQTHTSAIVKPQSSSC--SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP 183

Query: 380 NDQQILKEIAFVRKQMRHHLN 400
           ++ Q   ++A +      HL 
Sbjct: 184 SNGQPYNQLAILASSKGDHLT 204

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 13/83 (15%), Positives = 28/83 (33%)

Query: 316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQAL 375
                   +L+      A+ L +  +  +P +++A    G  Q         +    + L
Sbjct: 21  QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCL 80

Query: 376 DLLPNDQQILKEIAFVRKQMRHH 398
           +L P++Q  L  +A         
Sbjct: 81  ELKPDNQTALMALAVSFTNESLQ 103

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 12/172 (6%), Positives = 44/172 (25%)

Query: 228 DWGVAENDGSQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKY 287
              +                 +     +  +   +V      +                 
Sbjct: 120 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG 179

Query: 288 KKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN 347
                  ++       T     R         + A        + A+      L ++P  
Sbjct: 180 VLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 239

Query: 348 VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL 399
           +++ +  G + +++    + ++ + +AL++    +    E   + + +   L
Sbjct: 240 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTL 291

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 9e-04
 Identities = 12/87 (13%), Positives = 29/87 (33%), Gaps = 1/87 (1%)

Query: 313 YTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMN-NFEQGLQDY 371
           +        AV  + +  +RA  L  D + +   N      R     S+  +  + +   
Sbjct: 42  FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYI 101

Query: 372 EQALDLLPNDQQILKEIAFVRKQMRHH 398
              ++  P + Q+      + + +R  
Sbjct: 102 TAIIEEQPKNYQVWHHRRVLVEWLRDP 128

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 13/123 (10%), Positives = 46/123 (37%), Gaps = 4/123 (3%)

Query: 259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALL 318
             +D++   ++  N+ F+   ++ A++K  +           +   +++   +     L 
Sbjct: 124 AQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLG 183

Query: 319 NMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLL 378
           N++   L  +          D   +  +  +  F  G+  +S+ + +     ++ A+   
Sbjct: 184 NISEQTLMERLKA----DATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239

Query: 379 PND 381
            ++
Sbjct: 240 VHN 242

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 11/116 (9%), Positives = 22/116 (18%), Gaps = 6/116 (5%)

Query: 269 NSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFK 328
                +        A    +   +     N       +   R+         A       
Sbjct: 218 VRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPA-----EI 272

Query: 329 AYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQI 384
             +        + LM  +  + L    +            +    AL L      I
Sbjct: 273 VLEELNENARSLRLM-SDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 327

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	414
d2igva1	172	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d1ihga2	195	Cyclophilin 40 isomerase domain {Cow (Bos taurus)	100.0
d2r99a1	161	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1qnga_	170	Cyclophilin (eukaryotic) {Plasmodium falciparum [T	100.0
d2z6wa1	164	Mitochondrial peptidyl-prolyl cis-trans isomerase,	100.0
d1a33a_	174	Cyclophilin (eukaryotic) {Nematode (Brugia malayi)	100.0
d2cfea1	162	Cyclophilin-like allergen Mal s 6 {Malassezia symp	100.0
d1z81a1	186	Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId	100.0
d1h0pa_	182	Cyclophilin (eukaryotic) {Caenorhabditis elegans,	100.0
d2rmca_	182	Cyclophilin (eukaryotic) {Mouse (Mus musculus), va	100.0
d1qoia_	173	Cyclophilin (eukaryotic) {Human (Homo sapiens), U4	100.0
d1xo7a_	166	Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId	100.0
d2c3ba1	171	Cyclophilin (eukaryotic) {Aspergillus fumigatus [T	100.0
d2ok3a1	159	Cyclophilin-like protein PPIL3B {Human (Homo sapie	100.0
d1xwna1	166	Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1	100.0
d1v9ta_	166	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d2fu0a1	155	Putative cyclophilin PFE0505w {Plasmodium falcipar	100.0
d1zkca1	178	Peptidyl-prolyl cis-trans isomerase-like 2, Cyclop	100.0
d2b71a1	169	Cyclophilin-like protein PY00693 {Plasmodium yoeli	100.0
d2a2na1	164	Peptidylprolyl isomerase domain and WD repeat-cont	100.0
d1w74a_	171	Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycob	100.0
d1lopa_	164	Peptidyl-prolyl cis-trans isomerase A, PpiA {Esche	100.0
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.9
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.82
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.76
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.66
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.62
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.53
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.46
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.44
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.43
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.41
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.37
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.35
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.34
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.31
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.3
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.27
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.26
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.25
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.25
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.25
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.03
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.02
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.0
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.98
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.97
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.86
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.84
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.84
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.8
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.67
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.58
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.56
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.53
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.48
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.46
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.4
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.39
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.71
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.5
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.5
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.37
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	94.57
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	90.17
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	87.76
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	87.38
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	85.19

>d2igva1 b.62.1.1 (A:1-172) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 3 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 3 [TaxId: 6239]

Probab=100.00  E-value=5.3e-46  Score=318.34  Aligned_cols=171  Identities=58%  Similarity=0.949  Sum_probs=157.8

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .||+||||++|+++++|+|+||||.+.||+||+||++||++..+....++.++|+++.||||+++++||+|++...++  
T Consensus         2 ~~~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~~~~~k~~~y~~~~f~rv~~~~~i~~G~~~~~~~--   79 (172)
T d2igva1           2 SRSKVFFDITIGGKASGRIVMELYDDVVPKTAGNFRALCTGENGIGKSGKPLHFKGSKFHRIIPNFMIQGGDFTRGNG--   79 (172)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTCBCTTSSBSCCTTCBCCEEETTTEEEECCTTTSSS--
T ss_pred             CCCEEEEEEEECCEeccEEEEEEcCCCCcHHHHHHHHHHhccccccccCcccccCCcceeEEEecceEEcCCccCCCC--
Confidence            589999999999999999999999999999999999999998776667788999999999999999999999876655  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                .++...++..+++|.....|+.+|+|+|++.+ |++++
T Consensus        80 ------------------------------------------~~~~~~~~~~~~~e~~~~~~~~~G~lsma~~~-~~~~~  116 (172)
T d2igva1          80 ------------------------------------------TGGESIYGEKFPDENFKEKHTGPGVLSMANAG-PNTNG  116 (172)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCBS
T ss_pred             ------------------------------------------CCCcccCCCccCccccccccCCCcEEEEeecC-CCCcC
Confidence                                                      44555667788888888888899999999998 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS  224 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l~  224 (414)
                      ||||||++++|+||++|+|||+|++||++|++|+..++.+++|..+|+|.+||+|.
T Consensus       117 sqFfIt~~~~~~ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~~cG~l~  172 (172)
T d2igva1         117 SQFFLCTVKTEWLDGKHVVFGRVVEGLDVVKAVESNGSQSGKPVKDCMIADCGQLK  172 (172)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEEEC
T ss_pred             ceeEeeecCCcccCCceeEEEEEeccHHHHHHHHcCCCCCCCCCCCeEEEeccccC
Confidence            99999999999999999999999999999999999998899999999999999863

>d1ihga2 b.62.1.1 (A:2-196) Cyclophilin 40 isomerase domain {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin 40 isomerase domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.5e-45  Score=321.52  Aligned_cols=185  Identities=61%  Similarity=1.003  Sum_probs=166.9

Q ss_pred             ccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEeccceeccCCcc
Q psy793            4 SICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQFMIQGGDIT   82 (414)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~~~iq~G~~~   82 (414)
                      .+....||+||||++|+++++|+|+|+||.+.||+||+||++||+++.+.. ..++.++|+|+.||||++++++|+|++.
T Consensus         8 ~~~~~~np~v~~Di~i~~~~~G~I~IeL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~y~g~~f~rv~~~~~i~~G~~~   87 (195)
T d1ihga2           8 KPSNPSNPRVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFS   87 (195)
T ss_dssp             SSSCTTSCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTSSBSCCTTCBEEEEETTTEEEECCTT
T ss_pred             CCCCCCCCEEEEEEEECCEeeeEEEEEECCCCChHHHHHHHHHhccccccccccCCccccCCceeeEEEcCceeecCCcc
Confidence            456677999999999999999999999999999999999999999887665 4568899999999999999999999986


Q ss_pred             ccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCC
Q psy793           83 NFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTG  162 (414)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~  162 (414)
                      ...+                                            .++...++..++++.....|+.+|+|+|++.+
T Consensus        88 ~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~h~~~G~lsm~~~~  123 (195)
T d1ihga2          88 NQNG--------------------------------------------TGGESIYGEKFEDENFHYKHDKEGLLSMANAG  123 (195)
T ss_dssp             TSSS--------------------------------------------SCCCBTTBSCBCCCCCCBCCCSTTEEEECCSS
T ss_pred             CCCC--------------------------------------------CCCccCCCCcccccccCcccCcceEEeeeecC
Confidence            5444                                            33445567778888888899999999999999


Q ss_pred             CCCCccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCCCCCCCcCccc
Q psy793          163 HPNTNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLSLNEDWGVAE  233 (414)
Q Consensus       163 ~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l~~~~~~~i~~  233 (414)
                       |++++||||||++++|+||++|+|||+|++||++|++|+.+++.+++|..+|+|.+||++...+++++..
T Consensus       124 -~~s~~SqFfItl~~~~~LDg~ytVFG~Vv~Gmdvl~~I~~~~t~~~~P~~~i~I~~cG~l~~~~~~~~~~  193 (195)
T d1ihga2         124 -SNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILENVEVKGEKPAKLCVIAECGELKEGDDWGIFP  193 (195)
T ss_dssp             -TTCBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTEESSCEEEEEEEEECTTCCCCCSC
T ss_pred             -CCCCCceeEeeccCCcccCCcceEEEEEecCHHHHHHHHcCCCCCCCcCCCeEEEECcccCCCCcCCCCC
Confidence             9999999999999999999999999999999999999999999889999999999999999988776644

>d2r99a1 b.62.1.1 (A:139-299) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-45  Score=307.06  Aligned_cols=161  Identities=53%  Similarity=0.867  Sum_probs=146.2

Q ss_pred             CcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCC
Q psy793           10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGG   89 (414)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (414)
                      ||+||||++|+++++|+|+|+||.+.||+||+||++||++.+       .++|+|+.||||+|+|+||+|++....+   
T Consensus         1 np~vy~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~-------~~~Y~g~~f~Rv~~~~~iq~G~~~~~~~---   70 (161)
T d2r99a1           1 NPQVYMDIKIGNKPAGRIQMLLRSDVVPMTAENFRCLCTHEK-------GFGFKGSSFHRIIPQFMCQGGDFTNHNG---   70 (161)
T ss_dssp             CCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSS---
T ss_pred             CCEEEEEEEECCEeceEEEEEEcCCCCcHHHHHHHHhhhhcc-------ccccCCcEEEEEEEeeeEEeeeccCCCC---
Confidence            799999999999999999999999999999999999997643       4569999999999999999999876544   


Q ss_pred             ccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccc
Q psy793           90 ESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNS  169 (414)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~s  169 (414)
                                                               .++.+.++..++++....+|+.+|+++|++.+ |++++|
T Consensus        71 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~ls~~~~~-~~s~~s  108 (161)
T d2r99a1          71 -----------------------------------------TGGKSIYGKKFDDENFILKHTGPGLLSMANSG-PNTNGS  108 (161)
T ss_dssp             -----------------------------------------SCCCBTTBSCBCCCCCCSCCCSSSEEEECCSS-TTCBCS
T ss_pred             -----------------------------------------CCCccccCccccccccccccccceeeeecccC-CCCcCc
Confidence                                                     33445566667778888899999999999999 999999


Q ss_pred             hhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCC
Q psy793          170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQ  222 (414)
Q Consensus       170 qf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~  222 (414)
                      |||||++++|+||++|+|||+|++||++|++|+...+.+++|..+|+|.+||+
T Consensus       109 qFfI~~~~~~~Ldg~~tvFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~~CGe  161 (161)
T d2r99a1         109 QFFLTCDKTDWLDGKHVVFGEVTEGLDVLRQIEAQGSKDGKPKQKVIIADCGE  161 (161)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEE
T ss_pred             ceEeccCCccccCCcceEEEEEeehHHHHHHHHccCCCCCcCCCCEEEEeCCC
Confidence            99999999999999999999999999999999988888999999999999984

>d1qnga_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=1e-44  Score=309.87  Aligned_cols=170  Identities=58%  Similarity=0.928  Sum_probs=153.1

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      +.|++|||||+|++|++|+|+||||++.||+||+||++||++.+.. ..++.++|+|+.||||+++++||+|+...+++ 
T Consensus         1 ~~r~~vy~Di~i~~t~~G~ivIeL~~~~aP~tv~nF~~l~~~~~~~-~~~~~~~y~g~~~~rv~~~~~iq~g~~~~~~~-   78 (170)
T d1qnga_           1 SKRSKVFFDISIDNSNAGRIIFELFSDITPRTCENFRALCTGEKIG-SRGKNLHYKNSIFHRIIPQFMCQGGDITNGNG-   78 (170)
T ss_dssp             CCSCEEEEEEEESSSEEEEEEEEECTTTCHHHHHHHHHHHHTCEEC-TTSSEECCTTCBCCEEETTTEEEECCTTTSSS-
T ss_pred             CCCCEEEEEEEECCEEccEEEEEECCCCChHHHHHHHhhhcccccc-ccCccCccCcccceEEEeCceEEecCccCCCC-
Confidence            3689999999999999999999999999999999999999876533 23478899999999999999999999876555 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                 .++...++..++++...+.|+.+|+|+|++.+ |+++
T Consensus        79 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~-~~s~  114 (170)
T d1qnga_          79 -------------------------------------------SGGESIYGRSFTDENFNMKHDQPGLLSMANAG-PNTN  114 (170)
T ss_dssp             -------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCB
T ss_pred             -------------------------------------------CCCcccCCCccccccccccCCCCeEEEEeecC-CCCc
Confidence                                                       33344567778888888899999999999998 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      +||||||++++|+||++|+|||+|++||++|++|+..++.+++|..+|+|++||++
T Consensus       115 ~sqFfIt~~~~~~Ld~~~~vFG~Vv~Gmdvl~~I~~~~~~~g~P~~~i~I~~CG~l  170 (170)
T d1qnga_         115 SSQFFITLVPCPWLDGKHVVFGKVIEGMNVVREMEKEGAKSGYVKRSVVITDCGEL  170 (170)
T ss_dssp             CSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTCCCSSCEEEEEEEEC
T ss_pred             cccceeccCCcccccccccEEeEEeccHHHHHHHHhcCCCCcCCccCEEEEeeEcC
Confidence            99999999999999999999999999999999999999988999999999999975

>d2z6wa1 b.62.1.1 (A:2-165) Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Mitochondrial peptidyl-prolyl cis-trans isomerase, cyclophilin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=306.85  Aligned_cols=164  Identities=54%  Similarity=0.872  Sum_probs=148.9

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      +||+|||||+++++++|+|+||||++.||+||+||++||++++       ..+|+|+.||||+++++||+|++...++  
T Consensus         1 ~n~~v~~Di~i~~~~~G~i~ieL~~~~aP~tv~nF~~l~~~~~-------~~~Y~g~~f~rv~~~~~iq~g~~~~~~~--   71 (164)
T d2z6wa1           1 GNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEK-------GFGYKGSTFHRVIPSFMCQAGDFTNHNG--   71 (164)
T ss_dssp             CCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTT-------SCCSTTCBEEEEETTTEEEECCTTTSSS--
T ss_pred             CCCeEEEEEEECCEeceEEEEEECCCcCcHHHHHHHHHHhcCC-------CcccCCcEEEEecccceEecCCccCCCC--
Confidence            6999999999999999999999999999999999999998764       3459999999999999999999876544  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                .++.+.++..++++...+.|+.+|+|+|++.+ |++++
T Consensus        72 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~-~~s~~  108 (164)
T d2z6wa1          72 ------------------------------------------TGGKSIYGSRFPDENFTLKHVGPGVLSMANAG-PNTNG  108 (164)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCBC
T ss_pred             ------------------------------------------CCCccccCCcCCccccccccCCccEEEEecCC-CCCCC
Confidence                                                      33445566777777778888889999999988 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQLS  224 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l~  224 (414)
                      ||||||++++|+||++|+|||+|++||++|++|+.+++.+++|..+|+|.+||+|.
T Consensus       109 sqFfi~~~~~~~ldg~ytVFG~Vv~G~dvl~~I~~~~~~~~~P~~~i~I~~cG~l~  164 (164)
T d2z6wa1         109 SQFFICTIKTDWLDGKHVVFGHVIEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS  164 (164)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHHTCCTTSCCSSCEEEEEEEECC
T ss_pred             cceeccccCCCcccccceEEEEecccHHHHHHHHhCCCCCCCCCCCEEEEeCeecC
Confidence            99999999999999999999999999999999999999999999999999999873

>d1a33a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Nematode (Brugia malayi) [TaxId: 6279]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Nematode (Brugia malayi) [TaxId: 6279]

Probab=100.00  E-value=7.5e-44  Score=306.07  Aligned_cols=171  Identities=51%  Similarity=0.870  Sum_probs=154.2

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-CCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-KLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      +.|++||||++|+++++|+|+||||+|.||+||+||++||+++.+.+ ..++.++|+++.||||+++++||+|++..+++
T Consensus         1 ~~~~~v~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~l~~~~~~~~~~~~k~~~Y~~~~f~Rv~~~~~iq~g~~~~~~~   80 (174)
T d1a33a_           1 KDRRRVFLDVTIDGNLAGRIVMELYNDIAPRTCNNFLMLCTGMAGTGKISGKPLHYKGSTFHRVIKNFMIQGGDFTKGDG   80 (174)
T ss_dssp             CCCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHCTTCBCTTTCSBCCCTTCBEEEEETTTEEEECCTTTSSS
T ss_pred             CCCCEEEEEEEECCEeceEEEEEECCCCChHHHHHHHHHHhcccCCCcccCccceeCCceeeEEEeCCEEeeCCCCCCCC
Confidence            46899999999999999999999999999999999999999988776 44688999999999999999999999876544


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                  .++.+.++....++....+|+.+|+++|++.+ |++
T Consensus        81 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~-~~s  115 (174)
T d1a33a_          81 --------------------------------------------TGGESIYGGMFDDEEFVMKHDEPFVVSMANKG-PNT  115 (174)
T ss_dssp             --------------------------------------------SCCCCTTSSCBCCCCSCSCCCSTTEEEECCSS-TTC
T ss_pred             --------------------------------------------CCCCCccCccccccccccccCcceeeeeeccC-CCC
Confidence                                                        33344555556667778889999999999998 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQL  223 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l  223 (414)
                      ++|||||+++++|+||++|+|||+|++||+||++|+.+++ .+++|..+|+|.+||++
T Consensus       116 ~~sqFfI~~~~~p~ld~~~~vFG~VveG~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (174)
T d1a33a_         116 NGSQFFITTTPAPHLNNIHVVFGKVVSGQEVVTKIEYLKTNSKNRPLADVVILNCGEL  173 (174)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEC
T ss_pred             CCcccccccCCcccccccceeEEEEechHHHHHHHHhCCcCCCCCCCCCEEEEeeEEE
Confidence            9999999999999999999999999999999999999997 67899999999999986

>d2cfea1 b.62.1.1 (A:1-162) Cyclophilin-like allergen Mal s 6 {Malassezia sympodialis [TaxId: 76777]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like allergen Mal s 6
species: Malassezia sympodialis [TaxId: 76777]

Probab=100.00  E-value=3e-43  Score=297.92  Aligned_cols=161  Identities=52%  Similarity=0.839  Sum_probs=146.0

Q ss_pred             cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793           11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE   90 (414)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (414)
                      ..||||++++++++|+|+||||++.||+||+||++||+++.+.       +|+|+.||||+|+++||+|++..+++    
T Consensus         2 ~~V~fDi~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~~-------~Y~g~~f~rv~~~~~iq~G~~~~~~~----   70 (162)
T d2cfea1           2 SNVFFDITKNGAPLGTIKFKLFDDVVPKTAANFRALCTGEKGF-------GYAGSHFHRVIPDFMLQGGDFTAGNG----   70 (162)
T ss_dssp             CCEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSC-------CSTTCBCCEEETTTEEEECCTTTSSS----
T ss_pred             CeEEEEEEECCEEeeEEEEEEcCCCChHHHHHHHHHHhhccCC-------ccCCCEEEEEEecceEecCCCCCCCC----
Confidence            4689999999999999999999999999999999999876533       39999999999999999999876554    


Q ss_pred             cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccch
Q psy793           91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ  170 (414)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sq  170 (414)
                                                              .++.+.++..+.+|+..++|+.+|+|+|++.+ |++++||
T Consensus        71 ----------------------------------------~~~~~~~~~~~~~e~~~~~h~~~G~vsm~~~~-~~s~~sq  109 (162)
T d2cfea1          71 ----------------------------------------TGGKSIYGAKFADENFQLKHNKPGLLSMANAG-PNTNGSQ  109 (162)
T ss_dssp             ----------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCBSSC
T ss_pred             ----------------------------------------CCCcccCCCccccccCCCCCCCceEEEEeecC-CCCCCcc
Confidence                                                    33445566778888888999999999999998 9999999


Q ss_pred             hhhhcCCCCCCCCcceeeEEEEechHHHHHHhccccCCCCccccEEEEcCCCC
Q psy793          171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEAENDKPLVTCTITNSGQL  223 (414)
Q Consensus       171 f~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~~~~~P~~~i~I~~~g~l  223 (414)
                      ||||+++.|+||++|+|||+|++||++|++|+...+.+++|..+|+|.+||+.
T Consensus       110 F~I~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~P~~~i~I~~cgv~  162 (162)
T d2cfea1         110 FFITTVVTSWLDGKHVVFGEVIDGMNVVKAIEAEGSGSGKPRSRIEIAKCGVC  162 (162)
T ss_dssp             EEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTTCCTTSCCSSCEEEEEEEEC
T ss_pred             eEEeecCCccccccceEEEEEEehHHHHHHHhcCCCCCCCCCCCeEEEeeEcC
Confidence            99999999999999999999999999999999988889999999999999863

>d1z81a1 b.62.1.1 (A:25-210) Cyclophilin (eukaryotic) {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=9.5e-43  Score=301.66  Aligned_cols=174  Identities=46%  Similarity=0.822  Sum_probs=153.4

Q ss_pred             cccccCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCcc
Q psy793            3 KSICKEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDIT   82 (414)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~   82 (414)
                      ....+..||+||||++++++++|+|+||||+|.||+||+||++||+++++.+  .+...|+|+.||||++++++|+|++.
T Consensus         9 ~~~~~~~np~V~~di~i~~~~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~--~~~~~Y~g~~f~rv~~~~~i~~G~~~   86 (186)
T d1z81a1           9 NLLTNPSNPVVFMDINLGNNFLGKFKFELFQNIVPKTSENFRQFCTGEYKVN--NLPVGYKNTIFHRVIKEFMIQGGDFI   86 (186)
T ss_dssp             GGSSSTTCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTCCBSS--SSBCSSTTEECCEEETTTEEEECCTT
T ss_pred             ccccCCCCCEEEEEEEECCEeceEEEEEEcCCCChHHHHHHHHHHhcccccC--CcccccCCCeeeeeecceeeecCCcc
Confidence            3456778999999999999999999999999999999999999999877432  24456999999999999999999986


Q ss_pred             ccCCCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCC
Q psy793           83 NFNGTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTG  162 (414)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~  162 (414)
                      ..++                                            .+....++..++++....+|+.+|+++|++.+
T Consensus        87 ~~~~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~g  122 (186)
T d1z81a1          87 NHNG--------------------------------------------SGSLSIYGEKFDDENFDIKHDKEGLLSMANSG  122 (186)
T ss_dssp             TSSS--------------------------------------------CCCCBTTBSCCCCCCCCSCCCSTTEEEECCSS
T ss_pred             ccCC--------------------------------------------cccccccCCcccccccccccCCCccchhhhcC
Confidence            5444                                            23334567778888888899999999999999


Q ss_pred             CCCCccchhhhhcCCCCCCCCcceeeEEEEec--hHHHHHHhcccc--CCCCccccEEEEcCCCC
Q psy793          163 HPNTNNSQFFITLAPCPHLDGKNVVFGCVRQG--FGVAREVSYVEA--ENDKPLVTCTITNSGQL  223 (414)
Q Consensus       163 ~~~~~~sqf~it~~~~p~ld~~~~vfG~V~~G--~~vv~~i~~~~~--~~~~P~~~i~I~~~g~l  223 (414)
                       |++++||||||++++|+||++|+|||+|++|  |++|++|+.+++  ..++|..+|+|.+||++
T Consensus       123 -~~~~~sqFfIt~~~~p~Ldg~~tVFG~Vv~G~~mdvv~kI~~~~~~~~~~~P~~~i~I~~CGel  186 (186)
T d1z81a1         123 -PNTNGCQFFITTKKCEWLDGKNVVFGRIIDNDSLLLLKKIENVSVTPYIYKPKIPINVVECGEL  186 (186)
T ss_dssp             -SSCCCSCEEEESSCCGGGBTTBCEEEEECSHHHHHHHHHHHHSCBCTTTCCBSSCEEEEEEEEC
T ss_pred             -CCccccceeeecccccccCCCccEEEEEEeCccHHHHHHHhccCCCCCCCccCCCEEEEeCCcC
Confidence             9999999999999999999999999999999  999999999887  36899999999999975

>d1h0pa_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Caenorhabditis elegans, isoform 5 [TaxId: 6239]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Caenorhabditis elegans, isoform 5 [TaxId: 6239]

Probab=100.00  E-value=6.7e-43  Score=301.77  Aligned_cols=170  Identities=48%  Similarity=0.798  Sum_probs=152.8

Q ss_pred             cEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCc
Q psy793           11 YIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGE   90 (414)
Q Consensus        11 ~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~   90 (414)
                      .+|||||+++++++|+|+||||.|.||+||+||++||+++       +..+|+|+.||||+++|+||+|++..+++    
T Consensus         7 ~~vy~di~i~~~~~G~i~IeL~~d~aP~tv~nF~~l~~~g-------~~~~y~g~~f~rv~~~~~iq~G~~~~~~~----   75 (182)
T d1h0pa_           7 DRVYFDMEIGGKPIGRIVIGLFGKTVPKTATNFIELAKKP-------KGEGYPGSKFHRVIADFMIQGGDFTRGDG----   75 (182)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHSC-------TTTSSTTCBCCEEETTTEEEECCTTTSSS----
T ss_pred             CeEEEEEEECCEECeEEEEEECCCCChHHHHHHHHHHHhc-------ccCCcCCceEEEEEecceEEcCCCCCCCC----
Confidence            5799999999999999999999999999999999999765       23469999999999999999999876655    


Q ss_pred             cccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccch
Q psy793           91 SIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQ  170 (414)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sq  170 (414)
                                                              .++.+.++..+.++.....|+.+|+++|++.+ +++++||
T Consensus        76 ----------------------------------------~g~~~~~~~~~~~~~~~~~~~~~G~~~~a~~g-~~s~~sq  114 (182)
T d1h0pa_          76 ----------------------------------------TGGRSIYGEKFADENFKLKHYGAGWLSMANAG-ADTNGSQ  114 (182)
T ss_dssp             ----------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCBCSC
T ss_pred             ----------------------------------------CCCCCCCCCccCcccccccccCCceeeecccC-CCCcCcc
Confidence                                                    44456667777888888888899999999998 9999999


Q ss_pred             hhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcCcc
Q psy793          171 FFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGVA  232 (414)
Q Consensus       171 f~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~i~  232 (414)
                      ||||++++|+|||+|||||+|++||++|++|+.+++ ..++|..+|+|.+||++....|+.++
T Consensus       115 FfIt~~~~~~ldg~ytvFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~cG~l~~~~p~~~~  177 (182)
T d1h0pa_         115 FFITTVKTPWLDGRHVVFGKILEGMDVVRKIEQTEKLPGDRPKQDVIIAASGHIAVDTPFSVE  177 (182)
T ss_dssp             EEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCEETTTEESSCEEEEEEEEEEEEEEEECC
T ss_pred             ccccccccccccccceeEEEEeehHHHHHHHHhcCCCCCCCCCCCEEEEECCeEeCCCCCccc
Confidence            999999999999999999999999999999999997 56799999999999999877776553

>d2rmca_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Mouse (Mus musculus), variant C [TaxId: 10090]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Mouse (Mus musculus), variant C [TaxId: 10090]

Probab=100.00  E-value=1.2e-42  Score=300.03  Aligned_cols=170  Identities=54%  Similarity=0.864  Sum_probs=152.1

Q ss_pred             CcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCC
Q psy793           10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGG   89 (414)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (414)
                      ..+||||++|+++++|+|+||||.+.||+||+||++||++++       .++|+|+.||||++++++|+|++...++   
T Consensus         7 t~~vy~di~i~~~~~G~ivieL~~d~aP~tv~nF~~l~~~~k-------~~~Y~g~~f~rv~~~~~iq~G~~~~~~~---   76 (182)
T d2rmca_           7 TDKVFFDVRIGDKDVGRIVIGLFGNVVPKTVENFVALATGEK-------GYGYKGSIFHRVIKDFMIQGGDFTARDG---   76 (182)
T ss_dssp             EEEEEEEEEETTEEEEEEEEEECTTTSHHHHHHHHHHHHTTT-------SCSSTTCBEEEEETTTEEEECCCSSSSS---
T ss_pred             CCeEEEEEEECCEECcEEEEEEcCCCCcHHHHHHHHhhhcCC-------CccccCceeeeeecCceEEcCCCCCCCC---
Confidence            457999999999999999999999999999999999998764       3569999999999999999999876544   


Q ss_pred             ccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccc
Q psy793           90 ESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNS  169 (414)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~s  169 (414)
                                                               .++.+.++..++++...+.|+.+|+|+|++.+ +++++|
T Consensus        77 -----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~-~~s~~s  114 (182)
T d2rmca_          77 -----------------------------------------TGGMSIYGETFPDENFKLKHYGIGWVSMANAG-PDTNGS  114 (182)
T ss_dssp             -----------------------------------------SCCCBTTBSCBCCCCCCSCCCSTTEEEECCSS-TTCBCS
T ss_pred             -----------------------------------------CCCCCCcCCcccccccccccCCCccEehhhcC-CCccCc
Confidence                                                     34455667778888888889899999999998 999999


Q ss_pred             hhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCCCCCCCcCc
Q psy793          170 QFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQLSLNEDWGV  231 (414)
Q Consensus       170 qf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l~~~~~~~i  231 (414)
                      |||||++++|+||++|+|||+|++||++|++|+.+++ .+++|..+|+|.+||++....|+.+
T Consensus       115 qFfI~~~~~~~ld~~~~vFG~Vi~G~dvl~~I~~~~~~~~~~P~~~v~I~~~g~l~~~~P~~~  177 (182)
T d2rmca_         115 QFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQATDGHDRPLTDCTIVNSGKIDVKTPFVV  177 (182)
T ss_dssp             CEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCEEEEEEEEEEEEEEEEC
T ss_pred             cccccccCCchhcccceEEEEEechHHHHHHHHhCCcCCCCcCCCCeEEEEeeEEeCCCCccc
Confidence            9999999999999999999999999999999999997 7889999999999999975555433

>d1qoia_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Human (Homo sapiens), U4/U6 snRNP-specific cyclophilin snucyp-20 [TaxId: 9606]

Probab=100.00  E-value=2e-42  Score=296.83  Aligned_cols=170  Identities=54%  Similarity=0.885  Sum_probs=146.2

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      .+.||+||||++++++++|+|+|+||++.||+||+||++||+.++.  ..++...|+++.||||++++++|+|++..+.+
T Consensus         3 ~~~np~v~~di~i~~~~~G~i~ieL~~~~aP~tv~nF~~L~~~~~~--~~~~~~~y~~~~f~rv~~~~~~q~G~~~~~~~   80 (173)
T d1qoia_           3 SPVNPVVFFDVSIGGQEVGRMKIELFADVVPKTAENFRQFCTGEFR--KDGVPIGYKGSTFHRVIKDFMIQGGDFVNGDG   80 (173)
T ss_dssp             SCCCCEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHSCCE--ETTEECSSTTCBCCEEETTTEEEECCTTTSSS
T ss_pred             CCCCCEEEEEEEECCEeCeEEEEEEcCCCCcHHHHHHHHhhccccc--ccCCCCCcCCcccceeccceeeccCCcccCCc
Confidence            3478999999999999999999999999999999999999987651  11233349999999999999999999865433


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNT  166 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~  166 (414)
                                                                  ......++..+.++.....|+.+|+|+|++++ |++
T Consensus        81 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~l~ma~~~-~~s  115 (173)
T d1qoia_          81 --------------------------------------------TGVASIYRGPFADENFKLRHSAPGLLSMANSG-PST  115 (173)
T ss_dssp             --------------------------------------------CCCCCTTSSCBCCCCCCSCCCSTTEEEECCSS-TTC
T ss_pred             --------------------------------------------ceeecccCCcccccccccccCCCcEEEeeecC-CCC
Confidence                                                        11222334556666677788899999999999 999


Q ss_pred             ccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793          167 NNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQL  223 (414)
Q Consensus       167 ~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l  223 (414)
                      ++|||||++++.|+||++|||||+|++||++|++|+.+++ .+++|..+|+|.+||.+
T Consensus       116 ~~sqFfI~~~~~~~ldg~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~i~I~~cGel  173 (173)
T d1qoia_         116 NGCQFFITCSKCDWLDGKHVVFGKIIDGLLVMRKIENVPTGPNNKPKLPVVISQCGEM  173 (173)
T ss_dssp             BCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             CCceeeeeccCCccCCcceeEEEEEechHHHHHHHHhCCcCCCCcCCCCEEEEcccCC
Confidence            9999999999999999999999999999999999999998 67899999999999875

>d1xo7a_ b.62.1.1 (A:) Cyclophilin (eukaryotic) {Trypanosoma cruzi [TaxId: 5693]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=3.3e-42  Score=293.13  Aligned_cols=162  Identities=54%  Similarity=0.937  Sum_probs=142.5

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      -.++||||++++++++|+|+||||.+.||+||+||++||+++++.+       |+|+.||||+++++||+|++...++  
T Consensus         4 ~t~~V~~di~i~~~~~G~i~ieL~~~~aP~t~~nF~~l~~~~~~~~-------Y~g~~f~rv~~~~~iq~G~~~~~~~--   74 (166)
T d1xo7a_           4 VTDKVYFDITIGDEPVGRVVIGLFGNDVPKTVENFKQLASGENGFG-------YKGSIFHRVIRNFMIQGGDFTNFDG--   74 (166)
T ss_dssp             CCEEEEEEEEETTEEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCC-------STTCBEEEEETTTEEEECCTTTSSS--
T ss_pred             CCCeEEEEEEECCEECcEEEEEECCCCChHHHHHHHHhhccccccc-------ccCcEEEEEcCCCEEEeCCCCCCCC--
Confidence            4678999999999999999999999999999999999998876544       9999999999999999999876555  


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCcc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                                .++...++..++.+.... |+.+|+|+|++.+ |++++
T Consensus        75 ------------------------------------------~~~~~~~~~~~~~~~~~~-~~~~G~l~~a~~g-~~s~~  110 (166)
T d1xo7a_          75 ------------------------------------------TGGKSIYGTRFDDENLKI-KHFVGAVSMANAG-PNSNG  110 (166)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCCS-CCCTTEEEECCSS-TTCBC
T ss_pred             ------------------------------------------CCCCCCCCcccccccccc-cccccceeecccC-CCCCC
Confidence                                                      233344455555555444 4579999999998 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCCCC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSGQL  223 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g~l  223 (414)
                      ||||||++++|+||++|+|||+|++||++|++|+++++ .+++|..+|+|.+||+|
T Consensus       111 sqFfIt~~~~~~ld~~~~vfG~Vi~G~~vl~~I~~~~~~~~~~P~~~i~I~~cgvl  166 (166)
T d1xo7a_         111 SQFFVTTAPTPWLDGRHVVFGKVVEGMDVVKKVENTKTGLNDKPKKAVKINDCGVL  166 (166)
T ss_dssp             SCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCGGGCBSSCEEEEEEEEC
T ss_pred             CeeEEccCCccccCccceeeeEEeeHHHHHHHHHcCCCCCCCCCCCCEEEEeeEeC
Confidence            99999999999999999999999999999999999997 67899999999999975

>d2c3ba1 b.62.1.1 (A:1-171) Cyclophilin (eukaryotic) {Aspergillus fumigatus [TaxId: 5085]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin (eukaryotic)
species: Aspergillus fumigatus [TaxId: 5085]

Probab=100.00  E-value=4.3e-41  Score=287.21  Aligned_cols=161  Identities=54%  Similarity=0.850  Sum_probs=119.6

Q ss_pred             cEEEEEEe-----eCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccC
Q psy793           11 YIVFLDVS-----IGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFN   85 (414)
Q Consensus        11 ~~~~~~~~-----~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~   85 (414)
                      ++||||++     +++|+.|+|+||||++.||+||+||++||+++++.+       |+++.||||+|+|++|+|++..++
T Consensus         2 ~~v~~di~~~~~~~~~T~~G~i~IeL~~~~aP~tv~nF~~l~~~~~~~~-------y~~~~f~ri~~~~~iq~G~~~~~~   74 (171)
T d2c3ba1           2 SQVFFDVEYAPVGTAETKVGRIVFNLFDKDVPKTAKNFRELCKRPAGEG-------YRESTFHRIIPNFMIQGGDFTRGN   74 (171)
T ss_dssp             CCEEEEEEECCTTCSCCEEEEEEEEECTTTSHHHHHHHHHHHHSCTTTS-------STTCBCCEEETTTEEEECC-----
T ss_pred             CeEEEeeeccccccccceeeEEEEEEcCCCChHHHHHHHHHhhhccccc-------ccCceeeEEEEEEeeEcCCccCCC
Confidence            68999997     778999999999999999999999999998765433       999999999999999999987655


Q ss_pred             CCCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCC
Q psy793           86 GTGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                      +                                            .++.+.++..+.++...+.|+.+|+|+|++.+ |+
T Consensus        75 ~--------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~G~lsma~~~-~~  109 (171)
T d2c3ba1          75 G--------------------------------------------TGGRSIYGDKFADENFSRKHDKKGILSMANAG-PN  109 (171)
T ss_dssp             -------------------------------------------------------------CHHHHHTCEEEEC------
T ss_pred             C--------------------------------------------CCCCcCCCCccccccccccCCCCceEEeeecC-CC
Confidence            5                                            23334455566677778888899999999988 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEE--echHHHHHHhccccCC--CCccccEEEEcCCCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVR--QGFGVAREVSYVEAEN--DKPLVTCTITNSGQL  223 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~--~G~~vv~~i~~~~~~~--~~P~~~i~I~~~g~l  223 (414)
                      +++||||||+++.|+||++|||||+|+  +||++|++|+.+++.+  ..|..++.|.+||+|
T Consensus       110 s~~sqFfI~~~~~~~ldg~~tvFG~Vie~~G~dvl~~I~~~~t~~g~~~p~~~v~I~~cGel  171 (171)
T d2c3ba1         110 TNGSQFFITTAVTSWLDGKHVVFGEVADEKSYSVVKEIEALGSSSGSVRSNTRPKIVNCGEL  171 (171)
T ss_dssp             ----CEEEECSCCTTCCSCCEEEEEECSHHHHHHHHHHHTTCCTTSCCCSSSCCEEEEEEEC
T ss_pred             CCCcceeeccCCccccCCCceEEEEEEeccCHHHHHHHHcCCCCCCCcCCCCCEEEEeCccC
Confidence            999999999999999999999999999  4999999999999854  368889999999875

>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PPIL3B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-40  Score=275.86  Aligned_cols=150  Identities=45%  Similarity=0.680  Sum_probs=130.4

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||++.||+||+||++||++++          |+|+.||||+++|+|||||+.....              
T Consensus         6 ~T~~G~i~ieL~~~~aP~tv~nF~~L~~~g~----------Y~~~~f~rv~~~~~iq~Gd~~~~~~--------------   61 (159)
T d2ok3a1           6 HTDVGDIKIEVFCERTPKTCENFLALCASNY----------YNGCIFHRNIKGFMVQTGDPTGTGR--------------   61 (159)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTTT----------TTTCBCCEEETTTEEEECCTTSSSS--------------
T ss_pred             EeCCeEEEEEEcCCCChHHHHHHHHHHhhhc----------ccceeEecccCCeEEEeCCccccCC--------------
Confidence            5666999999999999999999999997665          9999999999999999999864322              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCC-cccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e-~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                     ++...++..++.| ...++|+.+|+|+|++.+ |++++||||||+++.|
T Consensus        62 -------------------------------~~~~~~~~~~~~e~~~~~~~~~~G~lsma~~~-~~s~~sqFfIt~~~~p  109 (159)
T d2ok3a1          62 -------------------------------GGNSIWGKKFEDEYSEYLKHNVRGVVSMANNG-PNTNGSQFFITYGKQP  109 (159)
T ss_dssp             -------------------------------CCCCTTSSCBCCCCCTTCCSCSTTEEEECCSS-TTCBCSCEEEESSCCG
T ss_pred             -------------------------------CCcccCCCccccccccCCCCCCCeEEEEeeCC-CCCcCcceEeeeccCc
Confidence                                           2334456666666 346788899999999998 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhccccC--CCCccccEEEEcCCCCCCC
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEAE--NDKPLVTCTITNSGQLSLN  226 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~~--~~~P~~~i~I~~~g~l~~~  226 (414)
                      +||++|+|||+|++||++|++|+++++.  +.+|..+|+|.+|.++..+
T Consensus       110 ~ld~~~tvFG~V~~G~~vl~~I~~~~~~~~~~~P~~~i~I~~v~i~~~P  158 (159)
T d2ok3a1         110 HLDMKYTVFGKVIDGLETLDELEKLPVNEKTYRPLNDVHIKDITIHANP  158 (159)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTCCBCTTTCCBSSCCBEEEEEEECCS
T ss_pred             ccccceEEEEecccchHHHHHHHcCcCCCCCCCcCCCcEEEEEEEEeCC
Confidence            9999999999999999999999999873  4689999999999988654

>d1xwna1 b.62.1.1 (A:1-166) Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 1, PPIL1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.5e-39  Score=272.28  Aligned_cols=150  Identities=48%  Similarity=0.800  Sum_probs=132.6

Q ss_pred             CcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCC
Q psy793           10 NYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGG   89 (414)
Q Consensus        10 ~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~   89 (414)
                      +|+|+|++++     |+|+||||++.||+||+||++||+.+          ||+|+.||||+++|+|||||+.. .+   
T Consensus        11 ~p~v~~~T~~-----G~i~ieL~~~~aP~tv~nF~~L~~~g----------~Y~g~~f~rv~~~~~iq~Gd~~~-~~---   71 (166)
T d1xwna1          11 PPNVYLETSM-----GIIVLELYWKHAPKTCKNFAELARRG----------YYNGTKFHRIIKDFMIQGGDPTG-TG---   71 (166)
T ss_dssp             CCEEEEEESS-----CEEEEEECTTTCHHHHHHHHHHHHHT----------SSTTCCEEEEETTTEEEECCSTT-TT---
T ss_pred             CCEEEEEECc-----eeEEEEEcCCCChHHHHHHHHHHhcC----------CcCceeeeEEcccEEEEeCCCCC-CC---
Confidence            6799998887     99999999999999999999999655          49999999999999999999852 23   


Q ss_pred             ccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCC-cccccccccceeeeccCCCCCCcc
Q psy793           90 ESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNN  168 (414)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e-~~~~~~~~~g~l~~~~~~~~~~~~  168 (414)
                                                               .++.+.++..+++| +..+.|+.+|+|+|++++ |++++
T Consensus        72 -----------------------------------------~~~~~~~~~~~~~e~~~~~~~~~~G~lsm~~~~-~~s~~  109 (166)
T d1xwna1          72 -----------------------------------------RGGASIYGKQFEDELHPDLKFTGAGILAMANAG-PDTNG  109 (166)
T ss_dssp             -----------------------------------------SSCCCSSCSCCCCCCCTTCCSCSSSEEEEEEEE-TTEEE
T ss_pred             -----------------------------------------CCCccCCCCccccccCCCCCCCCCeEEEecccC-CCCCC
Confidence                                                     33445556667776 456788889999999988 99999


Q ss_pred             chhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcC
Q psy793          169 SQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNS  220 (414)
Q Consensus       169 sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~  220 (414)
                      |||||++++.|+||++|+|||+|++||+||++|+.+++ .+++|..+|+|.++
T Consensus       110 sqFfI~~~~~~~ld~~~tvFG~Vi~G~dvl~~I~~~~t~~~~~P~~~I~I~~a  162 (166)
T d1xwna1         110 SQFFVTLAPTQWLDGKHTIFGRVCQGIGMVNRVGMVETNSQDRPVDDVKIIKA  162 (166)
T ss_dssp             EEEEEECSCCSTTTTTSEEEEECSSCHHHHHHHHHSCBCSSSCBSSCCCEEEE
T ss_pred             cceEEeecChhhccccceEEEEEechHHHHHHHHhCCCCCCCCCCCCeEEEEe
Confidence            99999999999999999999999999999999999997 78899999999764

>d1v9ta_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-38  Score=269.32  Aligned_cols=154  Identities=31%  Similarity=0.488  Sum_probs=132.8

Q ss_pred             CCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCC
Q psy793            8 EGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGT   87 (414)
Q Consensus         8 ~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~   87 (414)
                      ++||+|+|+++.     |+|+||||++.||+||+||++||++++          |+|+.||||+++|++|+|++....+ 
T Consensus         2 ~g~~~V~l~T~~-----G~i~ieL~~~~aP~tv~nF~~L~~~~~----------Y~g~~fhRv~~~~~iq~G~~~~~~~-   65 (166)
T d1v9ta_           2 KGDPHVLLTTSA-----GNIELELDKQKAPVSVQNFVDYVNSGF----------YNNTTFHRVIPGFMIQGGGFTEQMQ-   65 (166)
T ss_dssp             CCSCEEEEEETT-----EEEEEEECTTTCHHHHHHHHHHHHTTT----------TTTCBEEEEETTTEEEESSBCTTCC-
T ss_pred             CCCCEEEEEECC-----eeEEEEEeCCCChHHHHHHHHHhhCCc----------cccceeeEEEEEeecccCCcCCccc-
Confidence            679999998876     999999999999999999999996655          9999999999999999998764322 


Q ss_pred             CCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCc
Q psy793           88 GGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                    ...++..+++|.....++.+|.|+|++.+.++++
T Consensus        66 ----------------------------------------------~~~~~~~~~~e~~~~~~~~rg~v~~~~~~~~~s~   99 (166)
T d1v9ta_          66 ----------------------------------------------QKKPNPPIKNEADNGLRNTRGTIAMARTADKDSA   99 (166)
T ss_dssp             ----------------------------------------------BCCCCCCBCCCGGGSCCCCTTEEEECCCSSTTCB
T ss_pred             ----------------------------------------------ccCCCCCccccccccccccCCEEEEEeeecCCCc
Confidence                                                          1234566777766555668999999997779999


Q ss_pred             cchhhhhcCCCCCCCCc-----ceeeEEEEechHHHHHHhccccC-----CCCccccEEEEcCCCC
Q psy793          168 NSQFFITLAPCPHLDGK-----NVVFGCVRQGFGVAREVSYVEAE-----NDKPLVTCTITNSGQL  223 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~-----~~vfG~V~~G~~vv~~i~~~~~~-----~~~P~~~i~I~~~g~l  223 (414)
                      +|||||++++.|+||+.     |||||+|++||++|++|+.+++.     .++|..+|+|.+|+++
T Consensus       100 ~sqFfI~~~~~~~ld~~~~~~~~tvfG~VveG~dvl~~I~~~~~~~~~~~~~~P~~~v~I~~~~vl  165 (166)
T d1v9ta_         100 TSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVADKISQVPTHDVGPYQNVPSKPVVILSATVL  165 (166)
T ss_dssp             CSCEEEESSCCGGGSCCSSCCCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCBEEEEEEC
T ss_pred             ccccccccCCccccccccccCCEEEeeEEeccHHHHHHHHhCcccCCCCCCCccCCCeEEEEEEEc
Confidence            99999999999998864     89999999999999999999873     2489999999999876

>d2fu0a1 b.62.1.1 (A:5-159) Putative cyclophilin PFE0505w {Plasmodium falciparum [TaxId: 5833]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Putative cyclophilin PFE0505w
species: Plasmodium falciparum [TaxId: 5833]

Probab=100.00  E-value=6.3e-38  Score=263.56  Aligned_cols=144  Identities=46%  Similarity=0.719  Sum_probs=126.8

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      .|+.|+|+||||++.||+||+||++||++++          |+|+.||||+++|+|||||+.. .+              
T Consensus         7 ~T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~----------Y~g~~f~rv~~~~~iq~Gd~~~-~~--------------   61 (155)
T d2fu0a1           7 YTTMGDIHISLFYKECKKTVQNFSVHSINGY----------YNNCIFHRVIKHFMVQTGDPSG-DG--------------   61 (155)
T ss_dssp             EETTEEEEEEECTTTCHHHHHHHHHHHHTTT----------TTTCBCCEEETTTEEEECCTTS-SS--------------
T ss_pred             EEcccEEEEEEcCCCChHHHHHHhhHhhCCc----------cccceeeeeeecceeeccCCCC-CC--------------
Confidence            4455999999999999999999999997665          9999999999999999999853 22              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcc-cccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENF-KLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~-~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .++.+.++..++++.. .+.|..+|+++|++.+ |++++|||||++++.|
T Consensus        62 ------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~sqFfI~~~~~~  110 (155)
T d2fu0a1          62 ------------------------------TGGESIWGNEFEDEFFDHLNHSKPFMVSMANCG-PNTNGSQFFITTVPCP  110 (155)
T ss_dssp             ------------------------------SCCCCTTSSCBCCCCBTTBCSSSSSEEEECCSS-TTCBCSCEEEESSCCG
T ss_pred             ------------------------------cCCcccCCCccccccccccccCCccEEEecccC-CCCCCccceecccCcc
Confidence                                          3344566777777754 5778778899999988 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcC
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNS  220 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~  220 (414)
                      +||++|+|||+|++||++|++|+++++ .+++|..+|+|.++
T Consensus       111 ~ld~~~tvFG~Vi~G~~vv~~I~~~~t~~~~~P~~~i~I~~v  152 (155)
T d2fu0a1         111 WLDFKHTVFGKVTQGSKIVLDIEKVRTDKRDKPLEDIKILNI  152 (155)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHTSCBCTTSCBSSCCBEEEE
T ss_pred             ccccceEEEEEEeccHHHHHHHHhCCCCCCCCcCCCcEEEEE
Confidence            999999999999999999999999997 78899999999876

>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-38  Score=269.97  Aligned_cols=150  Identities=44%  Similarity=0.717  Sum_probs=132.4

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      .|+.|+|+||||++.||+||+||++||++++          |+|+.||||+++++|||||+.. ++              
T Consensus         6 ~T~~G~i~IeL~~~~aP~tv~nF~~L~~~~~----------Y~g~~f~rv~~~~~iq~Gd~~~-~~--------------   60 (178)
T d1zkca1           6 HTNKGDLNLELHCDLTPKTCENFIRLCKKHY----------YDGTIFHRSIRNFVIQGGDPTG-TG--------------   60 (178)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTTT----------TTTEEEEEEETTTEEEECCTTS-SS--------------
T ss_pred             EeCCEEEEEEEcCCCChHHHHHHHHHHhcCC----------cCceEeeeccceeEEecCCccC-CC--------------
Confidence            3556999999999999999999999996665          9999999999999999999753 23              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCccchhhhhcCCCC
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTNNSQFFITLAPCP  179 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~p  179 (414)
                                                    .++.+.++..+++|. ..++|+.+|+|+|++++ +++++|||||+++++|
T Consensus        61 ------------------------------~~~~~~~~~~~~~E~~~~l~~~~~G~lsma~~~-~~s~~sqF~It~~~~~  109 (178)
T d1zkca1          61 ------------------------------TGGESYWGKPFKDEFRPNLSHTGRGILSMANSG-PNSNRSQFFITFRSCA  109 (178)
T ss_dssp             ------------------------------SCCCBTTBSCBCCCCCTTCCSCSTTEEEECCSS-TTCBCSCEEEESSCCG
T ss_pred             ------------------------------CCCcccCCCCcCCccccccCCCCCeEEEEeecC-CCCccceeeccccCCc
Confidence                                          344556677788774 46888889999999998 9999999999999999


Q ss_pred             CCCCcceeeEEEEechHHHHHHhcccc--CCCCccccEEEEcCCCCCCC
Q psy793          180 HLDGKNVVFGCVRQGFGVAREVSYVEA--ENDKPLVTCTITNSGQLSLN  226 (414)
Q Consensus       180 ~ld~~~~vfG~V~~G~~vv~~i~~~~~--~~~~P~~~i~I~~~g~l~~~  226 (414)
                      +||++|+|||+|++||++|++|+++++  .+++|..+|+|.+|.++..+
T Consensus       110 ~ld~~~~vFG~Vv~G~dvl~~I~~~~t~~~~~~P~~~v~I~~~~Il~~p  158 (178)
T d1zkca1         110 YLDKKHTIFGRVVGGFDVLTAMENVESDPKTDRPKEEIRIDATTVFVDP  158 (178)
T ss_dssp             GGTTTSCEEEEEEECHHHHHHHHHSCBCTTTCCBSSCCEEEEEEEEECT
T ss_pred             ccCCcceEEEEeeCcHHHHHHHHcCCCCCCCCccCCCeEEEEEEEEcCC
Confidence            999999999999999999999999987  46899999999999888654

>d2b71a1 b.62.1.1 (A:23-191) Cyclophilin-like protein PY00693 {Plasmodium yoelii [TaxId: 5861]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Cyclophilin-like protein PY00693
species: Plasmodium yoelii [TaxId: 5861]

Probab=100.00  E-value=2.5e-37  Score=263.22  Aligned_cols=152  Identities=43%  Similarity=0.729  Sum_probs=130.1

Q ss_pred             CCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCC
Q psy793            9 GNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTG   88 (414)
Q Consensus         9 ~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~   88 (414)
                      .+.+|.|.++.     |+|+||||++.||+||+||++||+.++          |+|+.||||+++|++|||++....   
T Consensus        15 ~~~~V~l~T~~-----G~i~IeL~~d~aP~tv~nF~~L~~~g~----------Y~~~~f~rv~~~~~iq~g~~~~~~---   76 (169)
T d2b71a1          15 ERGYITIYTNL-----GDFEVELYWYHSPKTCLNFYTLCEMGF----------YDNTIFHRVIPNFVIQGGDPTGTG---   76 (169)
T ss_dssp             HSCEEEEEETT-----EEEEEEECTTTSHHHHHHHHHHHHTTT----------TTTEEEEEEETTTEEEEEETTSSS---
T ss_pred             cccEEEEEeCc-----eeEEEEEeCCCCcHHHHHHHHHhhCCc----------cceeeeccccceeeEecccccccc---
Confidence            35567776665     999999999999999999999996554          999999999999999999986422   


Q ss_pred             CccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCc-ccccccccceeeeccCCCCCCc
Q psy793           89 GESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDEN-FKLKHKFEGQLSLANTGHPNTN  167 (414)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~-~~~~~~~~g~l~~~~~~~~~~~  167 (414)
                                                                .++.+.++..+++|. ..++|..+|+|+|++.+ |+++
T Consensus        77 ------------------------------------------~~~~~~~~~~~~~e~~~~l~h~~~g~ls~~~~~-p~s~  113 (169)
T d2b71a1          77 ------------------------------------------KGGKSIYGEYFEDEINKELKHTGAGILSMSNNG-PNTN  113 (169)
T ss_dssp             ------------------------------------------SCCCBTTBSCBCCCCCTTCCCCSTTEEEECCSS-TTCB
T ss_pred             ------------------------------------------CCCccccccccccccccccCCCCcEEEEhhhCC-CCCC
Confidence                                                      223334445566653 46789889999999999 9999


Q ss_pred             cchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc-CCCCccccEEEEcCC
Q psy793          168 NSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA-ENDKPLVTCTITNSG  221 (414)
Q Consensus       168 ~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g  221 (414)
                      +|||||++++.|+||++|+|||+|++||++|++|+++++ .+++|..+|+|.+++
T Consensus       114 ~sqFfIt~~~~~~ld~~~tvFG~Vv~G~dvl~~I~~~~~~~~~~P~~~i~I~~~~  168 (169)
T d2b71a1         114 SSQFFITLAPLPHLDGKHTIFARVSKNMTCIENIASVQTTATNKPIFDLKILRTS  168 (169)
T ss_dssp             SSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTCCBSSCCEEEEEE
T ss_pred             CCEEEEecCCcchhhhhcceeeEEeccHHHHHHHHhCCCCCCCCCCCCeEEEEcc
Confidence            999999999999999999999999999999999999997 678999999998764

>d2a2na1 b.62.1.1 (A:483-646) Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidylprolyl isomerase domain and WD repeat-containing protein 1, PPWD1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-36  Score=255.43  Aligned_cols=154  Identities=44%  Similarity=0.650  Sum_probs=126.5

Q ss_pred             cCCCcEEEEEEeeCCeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCC
Q psy793            7 KEGNYIVFLDVSIGEEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNG   86 (414)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~   86 (414)
                      +.....+.|+     |+.|+|+||||.+.||+||+||++||+.++          |+|+.||||+++|++|+|++.....
T Consensus         6 ~~~~~~a~~~-----T~~G~i~ieL~~~~aP~tv~nF~~l~~~g~----------Y~g~~f~rv~~~~~iq~G~~~~~~~   70 (164)
T d2a2na1           6 KRVSDSAIIH-----TSMGDIHTKLFPVECPKTVENFCVHSRNGY----------YNGHTFHRIIKGFMIQTGDPTGTGM   70 (164)
T ss_dssp             CCCCSEEEEE-----ETTEEEEEEECTTTCHHHHHHHHHHHHTTT----------TTTCBCCEEETTTEEEECCTTSSSS
T ss_pred             ccccCEEEEE-----eceeEEEEEEcCCCChHHHHHHHHHHhCCC----------cccceeeEEeeeeeEeecccccccC
Confidence            3344456665     455999999999999999999999996555          9999999999999999999864322


Q ss_pred             CCCccccCCCCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCC-CcccccccccceeeeccCCCCC
Q psy793           87 TGGESIYGPCFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFED-ENFKLKHKFEGQLSLANTGHPN  165 (414)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~-e~~~~~~~~~g~l~~~~~~~~~  165 (414)
                                                                   ++.......+.. ....+.|+..|+++|++.+ ++
T Consensus        71 ---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~  104 (164)
T d2a2na1          71 ---------------------------------------------GGESIWGGEFEDEFHSTLRHDRPYTLSMANAG-SN  104 (164)
T ss_dssp             ---------------------------------------------CCCCTTSSCBCCCCCTTCCSCSSSEEEECCSS-TT
T ss_pred             ---------------------------------------------CCceeeecccccccccccccCccceeehhhcC-CC
Confidence                                                         111111222333 3456788889999999999 99


Q ss_pred             CccchhhhhcCCCCCCCCcceeeEEEEechHHHHHHhcccc--CCCCccccEEEEcCC
Q psy793          166 TNNSQFFITLAPCPHLDGKNVVFGCVRQGFGVAREVSYVEA--ENDKPLVTCTITNSG  221 (414)
Q Consensus       166 ~~~sqf~it~~~~p~ld~~~~vfG~V~~G~~vv~~i~~~~~--~~~~P~~~i~I~~~g  221 (414)
                      +++|||||++++.|+||++|+|||+|++||++|++|+++++  ..++|..+|+|.++.
T Consensus       105 s~~sqFfI~~~~~~~ld~~~tVFG~V~~G~dvv~~I~~~~~~~~~~~P~~~V~I~~v~  162 (164)
T d2a2na1         105 TNGSQFFITVVPTPWLDNKHTVFGRVTKGMEVVQRISNVKVNPKTDKPYEDVSIINIT  162 (164)
T ss_dssp             CBCSCEEEESSCCGGGTTTSCEEEEEEECHHHHHHHHTSCBCTTTCCBSSCCBEEEEE
T ss_pred             CCcccceecccCccccccceeEEEEecChHHHHHHHHcCCcCCCCCCcCCCcEEEEEE
Confidence            99999999999999999999999999999999999999988  357999999998763

>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=5.2e-36  Score=256.13  Aligned_cols=152  Identities=38%  Similarity=0.568  Sum_probs=126.6

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCC-----CCCcccccCCCcceEEeccceeccCCccccCCCCCccccCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKG-----KLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGP   95 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~-----~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~   95 (414)
                      +|+.|+|+||||+|.||+||+||++||+++.+.+     ......||+++.|||+++++++|||++... +.        
T Consensus         9 ~T~~G~I~ieL~~d~aP~tv~nF~~L~~~~~~~~~~~~~~~~~~~~Y~g~~~~rv~~~~~iq~g~~~~~-~~--------   79 (171)
T d1w74a_           9 HTNRGDIKIALFGNHAPKTVANFVGLAQGTKDYSTQNASGGPSGPFYDGAVFHRVIQGFMIQGGDPTGT-GR--------   79 (171)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTCSCCSSCCTTBSSSSCSSTTEEEEEEETTTEEEECCTTSS-SS--------
T ss_pred             EECCEEEEEEEcCCCChHHHHHHHHHHhcCCccccccccccccCceECCeecccccCCceeEcccccCC-CC--------
Confidence            4566999999999999999999999999886543     123466899999999999999999998532 10        


Q ss_pred             CCCCCcccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCC-cccccccccceeeeccCCCCCCccchhhhh
Q psy793           96 CFEDENFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE-NFKLKHKFEGQLSLANTGHPNTNNSQFFIT  174 (414)
Q Consensus        96 ~~~~~~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e-~~~~~~~~~g~l~~~~~~~~~~~~sqf~it  174 (414)
                                                          ++  . ...+.+| ...++|+.+|+++|++.+ |++++|||||+
T Consensus        80 ------------------------------------~~--~-~~~~~~e~~~~~~~~~~g~v~~~~~~-~~s~~sqFfIt  119 (171)
T d1w74a_          80 ------------------------------------GG--P-GYKFADEFHPELQFDKPYLLAMANAG-PGTNGSQFFIT  119 (171)
T ss_dssp             ------------------------------------CC--S-SCCBCCCCCTTCCSCSSSEEEECCSS-TTCBSSCEEEE
T ss_pred             ------------------------------------CC--c-ccccccccCCCcCCCCCEEEEEEecC-CCCCCcceEee
Confidence                                                01  1 1123333 456788889999999998 99999999999


Q ss_pred             cCCCCCCCCcceeeEEEE--echHHHHHHhcccc-CCCCccccEEEEcCC
Q psy793          175 LAPCPHLDGKNVVFGCVR--QGFGVAREVSYVEA-ENDKPLVTCTITNSG  221 (414)
Q Consensus       175 ~~~~p~ld~~~~vfG~V~--~G~~vv~~i~~~~~-~~~~P~~~i~I~~~g  221 (414)
                      +++.|+||++|+|||+|+  +||+||++|+.+++ .+++|..+|+|.++.
T Consensus       120 ~~~~p~ld~~~tVFG~Vv~geGmdvl~~I~~~~~~~~~~P~~~i~I~~v~  169 (171)
T d1w74a_         120 VGKTPHLNRRHTIFGEVIDAESQRVVEAISKTATDGNDRPTDPVVIESIT  169 (171)
T ss_dssp             SSCCGGGTTTSCEEEEECSHHHHHHHHHHHTSCBCTTSCBSSCCEEEEEE
T ss_pred             ccCCCccccccEEEEEEeccccHHHHHHHHcCCcCCCCccCCCcEEEEEE
Confidence            999999999999999999  59999999999997 678999999998753

>d1lopa_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Cyclophilin-like
superfamily: Cyclophilin-like
family: Cyclophilin (peptidylprolyl isomerase)
domain: Peptidyl-prolyl cis-trans isomerase A, PpiA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.9e-36  Score=253.31  Aligned_cols=144  Identities=26%  Similarity=0.396  Sum_probs=119.7

Q ss_pred             CeeeeeEEEEEcCCcchhhHHHHHHhhhcCCCCCCCCcccccCCCcceEEeccceeccCCccccCCCCCccccCCCCCCC
Q psy793           21 EEKVGRMVIELFKHIVPKTAENFRALCTGEYGKGKLGKALHFTGSRFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDE  100 (414)
Q Consensus        21 ~~~~G~i~ieL~~~~aP~~~~nF~~l~~~~~~~~~~~~~~~y~~~~f~rv~~~~~iq~G~~~~~~~~~~~~~~~~~~~~~  100 (414)
                      +|+.|+|+||||++.||+||+||++||+.++          |+|+.||||+++|++|+|++....+              
T Consensus         5 ~T~~G~i~ieL~~~~aP~t~~nF~~l~~~g~----------Y~g~~fhrv~~~~~iq~G~~~~~~~--------------   60 (164)
T d1lopa_           5 HTNHGDIVIKTFDDKAPETVKNFLDYCREGF----------YNNTIFHRVINGFMIQGGGFEPGMK--------------   60 (164)
T ss_dssp             EETTEEEEEEECTTTSHHHHHHHHHHHHTTT----------TTTEECCEEETTTEEEESSEETTTE--------------
T ss_pred             EeCCeEEEEEEcCCCCHHHHHHHHHHHHccC----------cCCceeeEEcCCceeeeeccccCCc--------------
Confidence            4556999999999999999999999996554          9999999999999999998753211              


Q ss_pred             cccccccccchhcchhhhHhhcCCCCcCCCCccccccCCcCCCCcccccccccceeeeccCCCCCCccchhhhhcCCC--
Q psy793          101 NFKLKVISQYFHRIIPQFMIQGGDITNFNGTGGESIYGPCFEDENFKLKHKFEGQLSLANTGHPNTNNSQFFITLAPC--  178 (414)
Q Consensus       101 ~~~~~~~~~~f~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~e~~~~~~~~~g~l~~~~~~~~~~~~sqf~it~~~~--  178 (414)
                                                       ...++..+++|.....++.+|.|+|++++.|++++|||||++++.  
T Consensus        61 ---------------------------------~~~~~~~~~~e~~~~~~h~~g~l~~~~~~~~~~~~sqFfi~~~~~~~  107 (164)
T d1lopa_          61 ---------------------------------QKATKEPIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINVVDNDF  107 (164)
T ss_dssp             ---------------------------------ECCCCCCBCCCCCSSCCCCTTEEEECCCSSTTCBCSCEEEESSCCGG
T ss_pred             ---------------------------------CCccCCCccccccccccceeeEEEEeccCCCCCccceeeeecccccc
Confidence                                             122345567775444445799999998766999999999999864  


Q ss_pred             ------CCCCCcceeeEEEEechHHHHHHhccccC-----CCCccccEEEEcCC
Q psy793          179 ------PHLDGKNVVFGCVRQGFGVAREVSYVEAE-----NDKPLVTCTITNSG  221 (414)
Q Consensus       179 ------p~ld~~~~vfG~V~~G~~vv~~i~~~~~~-----~~~P~~~i~I~~~g  221 (414)
                            |+||++|+|||+|++||++|++|+.+++.     .++|..+|+|.++.
T Consensus       108 ~~~~~~~~~~~~ytvFG~Vv~G~dvl~~I~~~~t~~~~~~~~~P~~~v~I~~v~  161 (164)
T d1lopa_         108 LNFSGESLQGWGYCVFAEVVDGMDEVDKIKGVATGRSGMHQDVPKEDVIIESVT  161 (164)
T ss_dssp             GSCCSSSTTTSCCCEEEEEEECHHHHHHHHTSCEEEETTEEEEESSCCEEEEEE
T ss_pred             ccccCCCcCCCceeecCEEeccHHHHHHHHhCCcCCCCCcCCCcCCCeEEEEEE
Confidence                  78999999999999999999999999873     24899999998764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.93  E-value=1.2e-24  Score=185.07  Aligned_cols=160  Identities=30%  Similarity=0.501  Sum_probs=148.2

Q ss_pred             CccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHH
Q psy793          252 PETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYK  331 (414)
Q Consensus       252 ~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~  331 (414)
                      .+.|+.++..+.+..+++.|+.+|+.|+|.+|+..|++||.+++... ...........+....+|.|+|.||+++++|.
T Consensus         3 ~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~   81 (168)
T d1kt1a1           3 SWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEY-GLSEKESKASESFLLAAFLNLAMCYLKLREYT   81 (168)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCC-SCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-ccchhhhhhcchhHHHHHHhHHHHHHHhhhcc
Confidence            45677888999999999999999999999999999999999976543 34455666677888899999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy793          332 RAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQ  411 (414)
Q Consensus       332 ~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  411 (414)
                      +|+.+|+++|.++|++.++|+++|.++..+|+|++|+.+|+++++++|++..+...+..+...+.++.+++++.|++||.
T Consensus        82 ~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1          82 KAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C
Q psy793          412 N  412 (414)
Q Consensus       412 ~  412 (414)
                      +
T Consensus       162 ~  162 (168)
T d1kt1a1         162 K  162 (168)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=9.3e-25  Score=185.88  Aligned_cols=167  Identities=27%  Similarity=0.501  Sum_probs=155.3

Q ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHH
Q psy793          237 SQDVYPPFPEDWKSNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAA  316 (414)
Q Consensus       237 ~~d~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~  316 (414)
                      ++|+++++|++....+..  .+.....+..++..|+.+++.|+|.+|+..|++||.+.+...............|....+
T Consensus         2 ~gd~~~d~p~d~~~~l~~--~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~   79 (169)
T d1ihga1           2 SGDSHPDFPEDADVDLKD--VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSC   79 (169)
T ss_dssp             SCCCSCSSGGGSSSCTTC--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH
T ss_pred             CCCCCCCCchhhHHCHhh--HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHH
Confidence            578999999998887766  888889999999999999999999999999999999987766566666777788999999


Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +.|+|.||+++++|++|+.+|++||+++|+++++|+++|.+|..+|++++|+.+|++|++++|+|..+...+..+...++
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~  159 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  159 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy793          397 HHLNLEKMT  405 (414)
Q Consensus       397 ~~~~~~k~~  405 (414)
                      +..+++|+.
T Consensus       160 ~~~~~~k~~  168 (169)
T d1ihga1         160 AQKDKEKAA  168 (169)
T ss_dssp             HHHHHHHCC
T ss_pred             HHHHHHHhc
Confidence            999988764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3e-24  Score=182.91  Aligned_cols=159  Identities=30%  Similarity=0.516  Sum_probs=146.9

Q ss_pred             ccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHH
Q psy793          253 ETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKR  332 (414)
Q Consensus       253 ~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~  332 (414)
                      ++|+.++..+.+..+++.|+.+|+.|+|++|+..|++||.+++... ................+|.|+|.||+++++|++
T Consensus         2 ~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           2 WEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYES-SFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCC-CCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-ccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            3567899999999999999999999999999999999999976544 233455566677888899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy793          333 AINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARMFQN  412 (414)
Q Consensus       333 A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~~  412 (414)
                      |+.+|+++|.++|+++.+|+++|.||..+|+|++|+.+|+++++++|+|+.+...+..+...+.+..+.+++.|++||++
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999975

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.90  E-value=5.6e-23  Score=171.78  Aligned_cols=150  Identities=24%  Similarity=0.332  Sum_probs=135.9

Q ss_pred             CCCccCCHHHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC
Q psy793          250 SNPETVQLNQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA  329 (414)
Q Consensus       250 ~~~~~~~~~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~  329 (414)
                      .+..+++.++..+.+..+++.|+.+|+.|+|.+|+..|++||++++...............+....+|.|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            34566778899999999999999999999999999999999998776665555556666677788999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          330 YKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       330 ~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      |++|+.+|++||+++|.++++|+++|.++..+|++++|+.+|+++++++|+|..+...+..+..++++..
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999988776653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-20  Score=149.59  Aligned_cols=115  Identities=21%  Similarity=0.289  Sum_probs=110.9

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..++++|+.+++.|+|++|+..|++||.+                +|....+|.++|.||.++++|++|+.+|+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~   65 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL----------------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVD   65 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----------------CCcchhhhhcccccccccccccccchhhhhHHH
Confidence            4677899999999999999999999999999                899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ++|+++.+|+++|.++..+|++++|+.+|+++++++|+++.++..++.++.
T Consensus        66 ~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          66 LKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             hccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999999988864

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.5e-19  Score=150.13  Aligned_cols=124  Identities=19%  Similarity=0.345  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHH
Q psy793          258 NQMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLC  337 (414)
Q Consensus       258 ~~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~  337 (414)
                      +...+.|..++.+||.+|+.|+|++|+.+|++|+.+                +|....+|.++|.||+.+|++++|+.+|
T Consensus         4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------NPSNAIYYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc----------------chhhhhhhhhhHHHHHhccccchHHHHH
Confidence            345578999999999999999999999999999999                8899999999999999999999999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          338 DDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       338 ~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +++|+++|+++.+|+++|.++..+|++++|+.+|+++++++|++..++..+..+...+++
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998888765544

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=7.1e-19  Score=152.36  Aligned_cols=103  Identities=22%  Similarity=0.376  Sum_probs=99.0

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+++.|+.+|+.|+|++|+..|++||.+                +|....+|.|+|.||+++|+|++|+.+|++||++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~----------------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l   67 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITR----------------NPLVAVYYTNRALCYLKMQQPEQALADCRRALEL   67 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh
Confidence            567999999999999999999999999999                8889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      +|+++.+|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        68 ~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          68 DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            999999999999999999999999999999999988643

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.3e-17  Score=131.17  Aligned_cols=118  Identities=21%  Similarity=0.315  Sum_probs=105.1

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      +.|..++++|+.+|..|+|++|+.+|++||++                +|....++.|+|.||.++++|++|+.+|+++|
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~----------------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al   65 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL----------------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAI   65 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence            35788999999999999999999999999999                78888999999999999999999999999999


Q ss_pred             hcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNV-------KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       342 ~~~p~~~-------~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +++|.+.       ++|+++|.++..++++++|+.+|++++..+|+ +.+...+..+...++
T Consensus        66 ~l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HhCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            9998764       57888899999999999999999999999874 666777766655444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-16  Score=125.72  Aligned_cols=114  Identities=14%  Similarity=0.208  Sum_probs=103.8

Q ss_pred             HHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH---hhCHHHHHHHHHHHHhcC
Q psy793          268 KNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK---FKAYKRAINLCDDILLME  344 (414)
Q Consensus       268 ~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~---l~~~~~A~~~~~~al~~~  344 (414)
                      -+..|.+...+++++|.+.|++||.+                +|....+++|+|.|+++   .+++++|+..+++++..+
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~----------------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~   66 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAA----------------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG   66 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH----------------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhh----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc
Confidence            45778999999999999999999999                89999999999999987   556778999999999998


Q ss_pred             CCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          345 PNN--VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       345 p~~--~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      |.+  ..++|.+|.+|..+|+|++|+.+|+++++++|++..++..+..|..++++
T Consensus        67 ~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          67 SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            866  45899999999999999999999999999999999999999888877654

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=2.7e-15  Score=134.51  Aligned_cols=120  Identities=15%  Similarity=0.116  Sum_probs=111.7

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+..+|..|++.|+|++|+..|++||.+                +|..+.+|+++|.||.++|++++|+.+|++++
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l----------------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   98 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAI----------------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVL   98 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc----------------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHH
Confidence            45788999999999999999999999999999                88889999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      +++|+++.+++++|.++..+|++++|+..|+++++++|++......+..+......
T Consensus        99 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  154 (259)
T d1xnfa_          99 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDE  154 (259)
T ss_dssp             HHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCH
T ss_pred             HHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999998887777766655544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.57  E-value=5.4e-15  Score=121.30  Aligned_cols=118  Identities=20%  Similarity=0.318  Sum_probs=105.9

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHh----------hCHHHHHHHHHH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKF----------KAYKRAINLCDD  339 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l----------~~~~~A~~~~~~  339 (414)
                      .+..+-+.+.|++|+..|++|+.+                +|..+.+++++|.++..+          +.+++|+..+++
T Consensus         3 ~~~~~~r~~~fe~A~~~~e~al~~----------------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~k   66 (145)
T d1zu2a1           3 TETEFDRILLFEQIRQDAENTYKS----------------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEE   66 (145)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHccHHHHHHHHHHHHhh----------------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHH
Confidence            345677788899999999999999                999999999999999865          456899999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          340 ILLMEPNNVKALFRRGRAQVSMNN-----------FEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~lg~-----------~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ||+++|+++.+|+++|.+|..+|+           |++|+++|++|++++|++..++..|..+....+...+..|
T Consensus        67 Al~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~k  141 (145)
T d1zu2a1          67 ALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYK  141 (145)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             HHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999988764           7999999999999999999999999999888877776654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.4e-14  Score=124.77  Aligned_cols=122  Identities=16%  Similarity=0.167  Sum_probs=105.7

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+-.++++|..++..|+|+.|+..|.++.                   +....+|+|+|.||.++|+|++|+.+|++||+
T Consensus         4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i~-------------------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           4 EAISLWNEGVLAADKKDWKGALDAFSAVQ-------------------DPHSRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHTSS-------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHhcC-------------------CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            45578899999999999999999997642                   22346799999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC----------------HHHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND----------------QQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~----------------~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      ++|+++.+|+++|.++..+|++++|+.+|++|+...|.+                .+++.+++.++..+++..+...
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~  141 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE  141 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            999999999999999999999999999999999876654                3667788888888877766544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.53  E-value=8e-15  Score=121.80  Aligned_cols=117  Identities=8%  Similarity=0.143  Sum_probs=95.2

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..++..|+.++..|+|++|+..|++||++.+.......    ....+....+|.|+|.||.++|+|++|+.+++++|
T Consensus         7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~----~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1           7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA----FDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC----CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh----cccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            34555667799999999999999999999999654432110    11134456889999999999999999999999999


Q ss_pred             hcCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          342 LMEPN-----------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       342 ~~~p~-----------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      .+.|.           ...+|+++|.+|..+|++++|+.+|++|+++.|...
T Consensus        83 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          83 HYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            87432           345899999999999999999999999999976543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.53  E-value=2e-14  Score=112.40  Aligned_cols=93  Identities=13%  Similarity=0.132  Sum_probs=89.2

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      ....|..+++.|++.+|+..|++++..                .|..+.+|.++|.++.+++++++|+.+++++++++|+
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   82 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK----------------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK   82 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc----------------ccccchhhhhhhhhhhhhhhHHHhhcccccccccccc
Confidence            567899999999999999999999999                8888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQAL  375 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al  375 (414)
                      +..+|+.+|.+|..+|++++|++.|++.|
T Consensus        83 ~~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          83 DIAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999976

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=1.4e-13  Score=127.72  Aligned_cols=120  Identities=10%  Similarity=0.057  Sum_probs=72.4

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC-HHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA-YKRAINLCDDI  340 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~-~~~A~~~~~~a  340 (414)
                      +.++.+...|..+.+.+.+++|+..|++||++                +|....+|.++|.++..+++ +++|+.+++++
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l----------------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~a  104 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL----------------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAI  104 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH----------------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence            34666777788888889999999999999988                45555555555555555442 55555555555


Q ss_pred             HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHH
Q psy793          341 LLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRH  397 (414)
Q Consensus       341 l~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~  397 (414)
                      ++++|++..+|+++|.++..+|++++|+..|+++++++|.+..++..++.+...+++
T Consensus       105 l~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~  161 (315)
T d2h6fa1         105 IEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKL  161 (315)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHh
Confidence            555555555555555555555555555555555555555555555555555444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2e-13  Score=127.76  Aligned_cols=87  Identities=16%  Similarity=0.195  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      .|....++..++.++.++|++++|+..++++++++|+++.+++++|.++..+|++++|+..|++|++++|++..++..++
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg  380 (388)
T d1w3ba_         301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG  380 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            45666788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy793          390 FVRKQMR  396 (414)
Q Consensus       390 ~~~~~~~  396 (414)
                      .++.+++
T Consensus       381 ~~~~~~~  387 (388)
T d1w3ba_         381 NTLKEMQ  387 (388)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHcC
Confidence            8887653

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=6.9e-13  Score=113.84  Aligned_cols=101  Identities=15%  Similarity=0.222  Sum_probs=94.1

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+.++|..+++.|+|++|+..|++||++                +|....+|+++|.||.++|+|++|+.+|++|+...
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~l----------------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~  100 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINR----------------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQL  100 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHH----------------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence            45889999999999999999999999999                89999999999999999999999999999999875


Q ss_pred             CCC----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q psy793          345 PNN----------------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPND  381 (414)
Q Consensus       345 p~~----------------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~  381 (414)
                      +.+                ..+++++|.++..+|++++|+..|++|+++.|+.
T Consensus       101 ~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         101 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            543                4789999999999999999999999999999875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.7e-13  Score=126.59  Aligned_cols=105  Identities=10%  Similarity=0.131  Sum_probs=96.5

Q ss_pred             HHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcC
Q psy793          265 RTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLME  344 (414)
Q Consensus       265 ~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~  344 (414)
                      ..+...|..+...|++++|+..|++++..                .|....+|.++|.+|.++|++++|+.+|+++++++
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  236 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSV----------------RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ  236 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             ccchhhHHHHHHHHHHhhhhccccccccc----------------ccccccchhhhhhcccccccchhHHHHHHHHHHHh
Confidence            44677899999999999999999999998                77788999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHH
Q psy793          345 PNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQIL  385 (414)
Q Consensus       345 p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~  385 (414)
                      |+++.+|+.+|.+|..+|++++|+..|++|++++|++..+.
T Consensus       237 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~  277 (323)
T d1fcha_         237 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPR  277 (323)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC----
T ss_pred             hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhh
Confidence            99999999999999999999999999999999999886644

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3e-13  Score=125.42  Aligned_cols=117  Identities=12%  Similarity=0.077  Sum_probs=108.6

Q ss_pred             HHHHHHhhhHHhhhc-CHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          264 IRTIKNSGNEYFKLN-RMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       264 a~~~~~~G~~~~~~~-~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      ...+..+|..+.+.+ ++++|+..|++++++                +|....+|.++|.++.++|++++|+.+++++++
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----------------~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~  140 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----------------QPKNYQVWHHRRVLVEWLRDPSQELEFIADILN  140 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----------------HHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhh
Confidence            456788999999876 599999999999999                899999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      ++|++..+|+++|.++..++++++|+.+|+++++++|.+..++..++.+...++
T Consensus       141 ~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~  194 (315)
T d2h6fa1         141 QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTT  194 (315)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcc
Confidence            999999999999999999999999999999999999999999999988866543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.37  E-value=1.3e-12  Score=116.60  Aligned_cols=115  Identities=10%  Similarity=0.003  Sum_probs=100.5

Q ss_pred             hhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy793          276 KLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRG  355 (414)
Q Consensus       276 ~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g  355 (414)
                      ...+++.|+..+++++....            ..++....+|+++|.+|.++|+|++|+.+++++|+++|+++.+|+++|
T Consensus        11 ~~~~~e~al~~~~e~l~~~~------------~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg   78 (259)
T d1xnfa_          11 PTLQQEVILARMEQILASRA------------LTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLG   78 (259)
T ss_dssp             CCHHHHHHHHHHHHHHTSSC------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHhhh------------cCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhc
Confidence            34567788888887765311            015667889999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          356 RAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       356 ~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      .++..+|++++|+..|+++++++|++..++..++.++..+++..+..
T Consensus        79 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~  125 (259)
T d1xnfa_          79 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ  125 (259)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH
Confidence            99999999999999999999999999999999999998887776543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2.6e-12  Score=96.83  Aligned_cols=89  Identities=12%  Similarity=0.040  Sum_probs=72.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      ++.+++.|+.+++.|+|.+|+..|++|+++.+.....         .+....++.|+|.|+.++|+|++|+.+++++|++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~---------~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l   75 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS---------TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC---------SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc---------CccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence            5668899999999999999999999999986543311         2345678888999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHc
Q psy793          344 EPNNVKALFRRGRAQVSM  361 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~l  361 (414)
                      +|+++.++.+++.....+
T Consensus        76 ~P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          76 DPEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             CTTCHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHh
Confidence            998888888887765544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.34  E-value=8.7e-12  Score=96.95  Aligned_cols=88  Identities=15%  Similarity=0.078  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      .++++|.++++.|++.+|+..+++++..+|+++.+|+.+|.++..++++++|+.+|++|++++|++..++..++.++..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy793          396 RHHLNLEK  403 (414)
Q Consensus       396 ~~~~~~~k  403 (414)
                      ++..+..+
T Consensus        98 g~~~~A~~  105 (112)
T d1hxia_          98 HNANAALA  105 (112)
T ss_dssp             HHHHHHHH
T ss_pred             CCHHHHHH
Confidence            98887754

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=4e-12  Score=118.62  Aligned_cols=124  Identities=17%  Similarity=0.200  Sum_probs=114.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+++.|++++|+..|++|+++                .|....++.++|.++.+++++.+|+..+++++..
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----------------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  300 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL----------------QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL  300 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----------------CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc
Confidence            345677899999999999999999999988                7777889999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      .|.+..+++.+|.++..+|++++|+..|+++++++|++..++..++.++..+++..+..+
T Consensus       301 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~  360 (388)
T d1w3ba_         301 CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999988887766543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.3e-12  Score=94.00  Aligned_cols=82  Identities=15%  Similarity=0.126  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNN-------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKE  387 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~-------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~  387 (414)
                      .-++++|.++++.|+|++|+.++++|+++.|.+       +.+++++|.++..+|++++|+..|+++++++|+++.++.+
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            446799999999999999999999999886543       6789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy793          388 IAFVRKQMR  396 (414)
Q Consensus       388 l~~~~~~~~  396 (414)
                      ++.+...+.
T Consensus        86 l~~~~~~l~   94 (95)
T d1tjca_          86 LKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            988877654

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=2.4e-11  Score=95.20  Aligned_cols=87  Identities=14%  Similarity=0.174  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +.+.|..+++.|+|++|+..|+++|+.+|+++.+|+.+|.+|..+|++++|+..|+++++++|++..++..++.++..++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q psy793          397 HHLNLEK  403 (414)
Q Consensus       397 ~~~~~~k  403 (414)
                      +..+..+
T Consensus        86 ~~~~A~~   92 (117)
T d1elwa_          86 RFEEAKR   92 (117)
T ss_dssp             CHHHHHH
T ss_pred             CHHHHHH
Confidence            8887655

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.26  E-value=1.6e-11  Score=105.05  Aligned_cols=88  Identities=16%  Similarity=0.066  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q psy793          316 ALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQM  395 (414)
Q Consensus       316 ~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~  395 (414)
                      .+.+.|.++++.|+|++|+..|++||+++|.++.+|+++|.||..+|+|++|+.+|++|++++|++..++..++.++..+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l   85 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q psy793          396 RHHLNLEK  403 (414)
Q Consensus       396 ~~~~~~~k  403 (414)
                      ++..+..+
T Consensus        86 ~~~~~A~~   93 (201)
T d2c2la1          86 ESYDEAIA   93 (201)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            88877643

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.25  E-value=8.2e-11  Score=99.28  Aligned_cols=119  Identities=13%  Similarity=0.047  Sum_probs=103.5

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc------cCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN------QSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAIN  335 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~------~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~  335 (414)
                      ...+.+.+.|+.++..|++++|+..|.+||.+.+...      ..--......+.+....++.+++.++.++|+|++|+.
T Consensus         9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~   88 (179)
T d2ff4a2           9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA   88 (179)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence            4567899999999999999999999999998743111      0112556677788899999999999999999999999


Q ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-------HhhCCC
Q psy793          336 LCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQA-------LDLLPN  380 (414)
Q Consensus       336 ~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~a-------l~l~P~  380 (414)
                      +|+++++++|.+..+|..++.++..+|++.+|+..|+++       +.++|.
T Consensus        89 ~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~  140 (179)
T d2ff4a2          89 ELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG  140 (179)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            999999999999999999999999999999999999998       446775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.3e-11  Score=113.59  Aligned_cols=100  Identities=16%  Similarity=0.078  Sum_probs=95.7

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPN  346 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~  346 (414)
                      .+++|..+++.|+|++|+..|+++++.                +|....+|.++|.++..+|++++|+.+++++++++|+
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~----------------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~   85 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ----------------DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD   85 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc
Confidence            467899999999999999999999998                8888999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          347 NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       347 ~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      +..+|+.+|.++..+|++++|+..|++++.+.|.+.
T Consensus        86 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          86 NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             cccccccccccccccccccccccchhhHHHhccchH
Confidence            999999999999999999999999999999998753

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=3.1e-11  Score=99.79  Aligned_cols=90  Identities=18%  Similarity=0.139  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      +..+...|..|++.|+|++|+.+++++++++|+++.+|+++|.+++.+|++++|+.+|+++++++|++..++..++.++.
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            34466789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q psy793          394 QMRHHLNLEK  403 (414)
Q Consensus       394 ~~~~~~~~~k  403 (414)
                      .+++..+..+
T Consensus        90 ~~g~~~eA~~   99 (159)
T d1a17a_          90 ALGKFRAALR   99 (159)
T ss_dssp             HTTCHHHHHH
T ss_pred             HcCCHHHHHH
Confidence            9988877654

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=3.6e-11  Score=95.72  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      ..+-++|.+++..++|++|+.+|+++|+++|+++.+++++|.||..+|+|++|+.+|+++++++|++..++..++.++..
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45668999999999999999999999999999999999999999999999999999999999999988777777776666


Q ss_pred             HHHHHHH
Q psy793          395 MRHHLNL  401 (414)
Q Consensus       395 ~~~~~~~  401 (414)
                      ++.....
T Consensus        85 lg~~~~~   91 (128)
T d1elra_          85 IGNSYFK   91 (128)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6655443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=4.3e-10  Score=110.42  Aligned_cols=115  Identities=8%  Similarity=-0.022  Sum_probs=85.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+.+.|..+.+.+++..|+..|.+++..                .+  ..++.++|.++...++|++|+.+|++|+++
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----------------~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l  181 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSY----------------IC--QHCLVHLGDIARYRNQTSQAESYYRHAAQL  181 (497)
T ss_dssp             -----------------------CCHHHHH----------------HH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCC----------------CH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            344677899999999999999999999876                33  357889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMR  396 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~  396 (414)
                      +|++..+|+++|.++...|++.+|+..|.+|+.++|..+.++.+|..+.....
T Consensus       182 ~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         182 VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKAL  234 (497)
T ss_dssp             CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHT
T ss_pred             CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999998876544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.03  E-value=3.6e-10  Score=94.22  Aligned_cols=91  Identities=14%  Similarity=0.093  Sum_probs=83.6

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDIL  341 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al  341 (414)
                      ..+..+.++|..+++.|+|++|+..|++||++                +|..+.+|+++|.+|..+++|++|+.++++++
T Consensus        75 ~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~----------------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          75 VALSCVLNIGACKLKMSDWQGAVDSCLEALEI----------------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhcccchhhhhhhhhhhh----------------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            34667888999999999999999999999999                88899999999999999999999999999999


Q ss_pred             hcCCCCHHHHHHHHHHHHHcCCHHHHH
Q psy793          342 LMEPNNVKALFRRGRAQVSMNNFEQGL  368 (414)
Q Consensus       342 ~~~p~~~~a~~~~g~~~~~lg~~~~A~  368 (414)
                      +++|++..++..++.+...+..+.++.
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988877766654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=1.2e-09  Score=99.21  Aligned_cols=135  Identities=11%  Similarity=0.101  Sum_probs=107.7

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCD  338 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~  338 (414)
                      +..+.++.+...|+.|...++|++|+.+|.+|+++.....          ..+....+|.++|.||.+++++++|+.+++
T Consensus        32 ~~~~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~----------~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~  101 (290)
T d1qqea_          32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAG----------NEDEAGNTYVEAYKCFKSGGNSVNAVDSLE  101 (290)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC----------CCHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            4456678889999999999999999999999999854322          135567899999999999999999999999


Q ss_pred             HHHhcCCCC------HHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHHHHHHHHHH
Q psy793          339 DILLMEPNN------VKALFRRGRAQVS-MNNFEQGLQDYEQALDLLPND------QQILKEIAFVRKQMRHHLNLEK  403 (414)
Q Consensus       339 ~al~~~p~~------~~a~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~~------~~~~~~l~~~~~~~~~~~~~~k  403 (414)
                      +++++.+..      ..++.++|.++.. ++++++|+..|++|+++.+.+      ..++..++.++..++++.+...
T Consensus       102 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         102 NAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence            999886544      5678889988865 699999999999999875432      3456777788777776665443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.00  E-value=1.6e-09  Score=90.16  Aligned_cols=88  Identities=19%  Similarity=0.203  Sum_probs=81.0

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .+..+.++|..+++.++|.+|+..|+++|.+                +|....+|+++|.||..+|+|++|+.+++++++
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l----------------~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGL----------------DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhc----------------ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4566778999999999999999999999999                888999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHHHHcCCHHH
Q psy793          343 MEPNNVKALFRRGRAQVSMNNFEQ  366 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~~~lg~~~~  366 (414)
                      ++|++..++..++.+...++.+.+
T Consensus       127 l~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         127 VNPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHhHHH
Confidence            999999999999998877766644

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-09  Score=90.70  Aligned_cols=89  Identities=18%  Similarity=0.113  Sum_probs=81.7

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+.++|..|++.|+|++|+..+++||.+                +|..+.+|+++|.||..+|+|++|+.++++++++
T Consensus        62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~----------------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          62 LASHLNLAMCHLKLQAFSAAIESCNKALEL----------------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcccccchhhhhhhc----------------cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            455678999999999999999999999999                8889999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHH
Q psy793          344 EPNNVKALFRRGRAQVSMNNFEQGL  368 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~~~~A~  368 (414)
                      +|++..+...++.+...+.+..+..
T Consensus       126 ~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         126 YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988877766543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.97  E-value=9.8e-10  Score=90.03  Aligned_cols=84  Identities=15%  Similarity=0.098  Sum_probs=77.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+.++|..|++.++|++|+..|++||++                +|..+.+|+++|.||..+|+|++|+.++++++++
T Consensus        67 ~~~~~Nla~~~~~l~~~~~Al~~~~~al~~----------------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          67 ISCNLNLATCYNKNKDYPKAIDHASKVLKI----------------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHhcccchhhhhhhccccc----------------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456778999999999999999999999999                8999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCC
Q psy793          344 EPNNVKALFRRGRAQVSMNN  363 (414)
Q Consensus       344 ~p~~~~a~~~~g~~~~~lg~  363 (414)
                      +|++..+...++.+...+++
T Consensus       131 ~P~n~~~~~~l~~~~~kl~~  150 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLKE  150 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            99999999988888766543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.86  E-value=7.2e-09  Score=83.89  Aligned_cols=76  Identities=12%  Similarity=0.187  Sum_probs=69.0

Q ss_pred             HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM----------NNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l----------g~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      ..|.+++.|++|+..+++|++++|+++.+++++|.++..+          +.+++|+..|++|++++|++..++..++.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3467889999999999999999999999999999999854          556899999999999999999999999999


Q ss_pred             HHHHHH
Q psy793          392 RKQMRH  397 (414)
Q Consensus       392 ~~~~~~  397 (414)
                      +..+++
T Consensus        85 y~~~g~   90 (145)
T d1zu2a1          85 YTSFAF   90 (145)
T ss_dssp             HHHHHH
T ss_pred             HHHccc
Confidence            987764

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=2.9e-08  Score=89.83  Aligned_cols=111  Identities=7%  Similarity=0.025  Sum_probs=93.8

Q ss_pred             HHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHH
Q psy793          262 DVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK-FKAYKRAINLCDDI  340 (414)
Q Consensus       262 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-l~~~~~A~~~~~~a  340 (414)
                      ..+..+.+.|+.|.+.+++++|+..|++|+++.....          .......++.++|.+|.. +++|++|+..+++|
T Consensus        75 ~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A  144 (290)
T d1qqea_          75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG----------QFRRGANFKFELGEILENDLHDYAKAIDCYELA  144 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcc----------cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999965433          134456788999988865 79999999999999


Q ss_pred             HhcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Q psy793          341 LLMEPN------NVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQ  382 (414)
Q Consensus       341 l~~~p~------~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~  382 (414)
                      +++.+.      ...++.++|.++..+|+|++|+..|++++...|.+.
T Consensus       145 ~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             HHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            987432      246789999999999999999999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.84  E-value=6.1e-09  Score=96.16  Aligned_cols=119  Identities=9%  Similarity=0.070  Sum_probs=107.4

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC--HHHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA--YKRAINLCDDIL  341 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~--~~~A~~~~~~al  341 (414)
                      ...+...+..+...+++.+|+.+|+++++.                .|....+|.+++.++..+++  +++|+..+++++
T Consensus        73 l~~l~~~~~~~~~~~~~~~al~~~~~~l~~----------------~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al  136 (334)
T d1dcea1          73 LQHLETEKSPEESAALVKAELGFLESCLRV----------------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFL  136 (334)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHH
T ss_pred             HHHHhhhcchHHHHHHHHHHHHHHHHHHHh----------------CCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHH
Confidence            455667788888899999999999999998                88889999999999988876  899999999999


Q ss_pred             hcCCCCHHHH-HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHH
Q psy793          342 LMEPNNVKAL-FRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHH  398 (414)
Q Consensus       342 ~~~p~~~~a~-~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~  398 (414)
                      +++|++..++ +.+|.++...+.+++|+..++++++++|++..++..++.++..+++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         137 EADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             hhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence            9999999986 56789999999999999999999999999999999999998887654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=1.9e-08  Score=77.61  Aligned_cols=84  Identities=11%  Similarity=0.122  Sum_probs=74.0

Q ss_pred             HHHHHHHHHHHHHh---hCHHHHHHHHHHHHhcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHH
Q psy793          314 TAALLNMAAVQLKF---KAYKRAINLCDDILLMEPNNV-KALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIA  389 (414)
Q Consensus       314 ~~~~~nla~~~~~l---~~~~~A~~~~~~al~~~p~~~-~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~  389 (414)
                      +...++.|+|+.+.   .+.++|+..++.++..+|.+. .++|.+|.+|+.+|+|++|+.+++++|+++|+|..++....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            45678888888865   457899999999999998764 79999999999999999999999999999999999999888


Q ss_pred             HHHHHHHH
Q psy793          390 FVRKQMRH  397 (414)
Q Consensus       390 ~~~~~~~~  397 (414)
                      .|..++.+
T Consensus       115 ~Ie~~~~k  122 (124)
T d2pqrb1         115 MVEDKIQK  122 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88776654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.6e-08  Score=79.20  Aligned_cols=90  Identities=8%  Similarity=-0.006  Sum_probs=77.8

Q ss_pred             HHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCC--HHHHHHHHHHH
Q psy793          318 LNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSM---NNFEQGLQDYEQALDLLPND--QQILKEIAFVR  392 (414)
Q Consensus       318 ~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~l---g~~~~A~~~~~~al~l~P~~--~~~~~~l~~~~  392 (414)
                      .+++..+..++++++|.+.|+++|.++|+++.+++++|.|+...   +++++|+..|+++++.+|.+  ..++..++.++
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            46778889999999999999999999999999999999999864   56678999999999999866  45889999999


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy793          393 KQMRHHLNLEKMTYAR  408 (414)
Q Consensus       393 ~~~~~~~~~~k~~~~~  408 (414)
                      ..+++..+..+ .|.+
T Consensus        83 ~~~g~~~~A~~-~~~~   97 (122)
T d1nzna_          83 YRLKEYEKALK-YVRG   97 (122)
T ss_dssp             HHTTCHHHHHH-HHHH
T ss_pred             HHHhhhHHHHH-HHHH
Confidence            99998877664 4443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.58  E-value=4.2e-07  Score=83.40  Aligned_cols=105  Identities=7%  Similarity=0.025  Sum_probs=87.3

Q ss_pred             cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhC----------HHHHHHHHHHHHhcCCCC
Q psy793          278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKA----------YKRAINLCDDILLMEPNN  347 (414)
Q Consensus       278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~----------~~~A~~~~~~al~~~p~~  347 (414)
                      ...++|+..|.++|++                +|....+|.+++.++..++.          +.+|+.+++++++.+|++
T Consensus        43 ~~~~~al~~~~~~l~~----------------~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~  106 (334)
T d1dcea1          43 ELDESVLELTSQILGA----------------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKS  106 (334)
T ss_dssp             CCSHHHHHHHHHHHHH----------------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             cccHHHHHHHHHHHHH----------------CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            3458999999999998                78888888887777666554          899999999999999999


Q ss_pred             HHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCHHHHH-HHHHHHHHHHHH
Q psy793          348 VKALFRRGRAQVSMNN--FEQGLQDYEQALDLLPNDQQILK-EIAFVRKQMRHH  398 (414)
Q Consensus       348 ~~a~~~~g~~~~~lg~--~~~A~~~~~~al~l~P~~~~~~~-~l~~~~~~~~~~  398 (414)
                      ..+|+.+|.++..++.  +++|+..++++++++|.+..++. .+..+....+..
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1         107 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH
T ss_pred             HHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc
Confidence            9999999999988864  89999999999999999988765 444555444433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.56  E-value=2.2e-08  Score=89.39  Aligned_cols=115  Identities=7%  Similarity=-0.097  Sum_probs=91.3

Q ss_pred             hhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHH
Q psy793          270 SGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVK  349 (414)
Q Consensus       270 ~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~  349 (414)
                      ++..+++.|++++|+..|+++|+.                +|.+..++.+++.+|...|+|++|+..++++++++|++..
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~----------------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~   65 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKA----------------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   65 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHT----------------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHH----------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHH
Confidence            456789999999999999999999                8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHHHHHHH
Q psy793          350 ALFRRGRAQVSMNNFEQGLQDYEQALDL-LPNDQQILKEIAFVRKQMRHHLN  400 (414)
Q Consensus       350 a~~~~g~~~~~lg~~~~A~~~~~~al~l-~P~~~~~~~~l~~~~~~~~~~~~  400 (414)
                      ++..++.++...+..+++...+.+...+ +|.+...+.....+....++..+
T Consensus        66 ~~~~l~~ll~a~~~~~~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~  117 (264)
T d1zbpa1          66 GASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQ  117 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHhccccHHHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHH
Confidence            9999988888887777776665554443 34444444444444444444433

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=3.5e-07  Score=83.00  Aligned_cols=128  Identities=11%  Similarity=-0.014  Sum_probs=100.9

Q ss_pred             HHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          263 VIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       263 ~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .++....+|..++..|++++|+..|++||...+...           .+....++.++|.+|..+|++++|+..++++++
T Consensus        11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~-----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW-----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCC-----------cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            355566689999999999999999999999854433           455677899999999999999999999999998


Q ss_pred             cCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--------CHHHHHHHHHHHHHHHHHHHH
Q psy793          343 MEPNN------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN--------DQQILKEIAFVRKQMRHHLNL  401 (414)
Q Consensus       343 ~~p~~------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~--------~~~~~~~l~~~~~~~~~~~~~  401 (414)
                      +.+..      ..+++.++.++...+++..|...+.+++.+.+.        ...+...++.++...++....
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a  152 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEA  152 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhh
Confidence            75432      467889999999999999999999999986432        123455566666655554443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.48  E-value=2.2e-07  Score=75.65  Aligned_cols=86  Identities=15%  Similarity=0.128  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC----
Q psy793          317 LLNMAAVQLKFKAYKRAINLCDDILLMEPNN------------VKALFRRGRAQVSMNNFEQGLQDYEQALDLLPN----  380 (414)
Q Consensus       317 ~~nla~~~~~l~~~~~A~~~~~~al~~~p~~------------~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~----  380 (414)
                      +...|..++..|+|++|+..|++||++.|..            +.+|.++|.||..+|+|++|+.++++++++.|.    
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~   91 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   91 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccc
Confidence            3344788889999999999999999998764            367999999999999999999999999987542    


Q ss_pred             -------CHHHHHHHHHHHHHHHHHHHHH
Q psy793          381 -------DQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       381 -------~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                             ...++.+++.++..+++.++.-
T Consensus        92 ~~~~~~~~~~a~~~~g~~~~~lg~~eeA~  120 (156)
T d2hr2a1          92 NQDEGKLWISAVYSRALALDGLGRGAEAM  120 (156)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccccchhHHHHhhhHHHHHHHHHHHHHH
Confidence                   2346778888988888877653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=4.5e-08  Score=95.64  Aligned_cols=112  Identities=12%  Similarity=0.021  Sum_probs=68.6

Q ss_pred             HHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          273 EYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       273 ~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      .....+.|..|+..|.+++.+                ++.....+.++|.++.+.+++.+|+..+++++.++|  ..+++
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l----------------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~  156 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNV----------------DLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLV  156 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC-----------------------------------------------CCHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCC----------------ChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHH
Confidence            334455666777766666666                777888999999999999999999999999998876  47899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          353 RRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       353 ~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      ++|.++..+++|++|+.+|++|++++|++..++..|+.++...++..+.-
T Consensus       157 ~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~  206 (497)
T d1ya0a1         157 HLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTI  206 (497)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999999999999999999999999999998877776653

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.40  E-value=1.7e-06  Score=72.00  Aligned_cols=93  Identities=9%  Similarity=-0.060  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCC----------------------HHHHHHHHHHHHHcCCHHHH
Q psy793          310 RSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNN----------------------VKALFRRGRAQVSMNNFEQG  367 (414)
Q Consensus       310 ~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~----------------------~~a~~~~g~~~~~lg~~~~A  367 (414)
                      +-.....+.+.|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++|
T Consensus         7 D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A   86 (179)
T d2ff4a2           7 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV   86 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence            45566788999999999999999999999999986643                      25789999999999999999


Q ss_pred             HHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy793          368 LQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLE  402 (414)
Q Consensus       368 ~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~  402 (414)
                      +.+++++++++|.+..++..+..++...++..+..
T Consensus        87 l~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl  121 (179)
T d2ff4a2          87 IAELEALTFEHPYREPLWTQLITAYYLSDRQSDAL  121 (179)
T ss_dssp             HHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHH
Confidence            99999999999999999999999998888877764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2e-07  Score=84.71  Aligned_cols=104  Identities=10%  Similarity=-0.022  Sum_probs=87.6

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhc
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLM  343 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~  343 (414)
                      +..+...|..+...+++++|...|.+++...+..            .+.....+.++|.++..+|++++|+..+++++.+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  280 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFAN------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  280 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTT------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhcccc------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556778999999999999999999988752211            2344567889999999999999999999999844


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q psy793          344 ------EPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLP  379 (414)
Q Consensus       344 ------~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P  379 (414)
                            .|....+++.+|.+|..+|++++|+..|++|+++.+
T Consensus       281 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         281 ARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence                  466678999999999999999999999999999864

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.36  E-value=8.6e-07  Score=78.74  Aligned_cols=78  Identities=13%  Similarity=0.104  Sum_probs=70.9

Q ss_pred             HHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHH
Q psy793          322 AVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHL  399 (414)
Q Consensus       322 ~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~  399 (414)
                      .-.++.|++++|+..++++++.+|+++.++..+|.++...|++++|++.|+++++++|++..+...++.+....+...
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            345778999999999999999999999999999999999999999999999999999999999998888876555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.06  E-value=1.1e-05  Score=61.85  Aligned_cols=76  Identities=14%  Similarity=0.034  Sum_probs=57.1

Q ss_pred             HHHhhhHHhhh---cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH-HHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Q psy793          267 IKNSGNEYFKL---NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY-YTAALLNMAAVQLKFKAYKRAINLCDDILL  342 (414)
Q Consensus       267 ~~~~G~~~~~~---~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~~~al~  342 (414)
                      .++-|..+.+.   .+...|+.+++++++.                .|. ...+++++|.+|.++|+|++|..+++++|+
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~----------------~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKE----------------AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHH----------------CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhc----------------CchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34444444433   3456677777776655                443 457999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHH
Q psy793          343 MEPNNVKALFRRGRAQ  358 (414)
Q Consensus       343 ~~p~~~~a~~~~g~~~  358 (414)
                      ++|+|..|..-+-.+-
T Consensus       102 ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         102 HERNNKQVGALKSMVE  117 (124)
T ss_dssp             HCTTCHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHH
Confidence            9999999876655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=1.4e-05  Score=72.13  Aligned_cols=126  Identities=5%  Similarity=-0.014  Sum_probs=92.2

Q ss_pred             HHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHH-HHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCC
Q psy793          267 IKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSY-YTAALLNMAAVQLKFKAYKRAINLCDDILLMEP  345 (414)
Q Consensus       267 ~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~-~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p  345 (414)
                      +...+..+.+.|+++.|...|.+++..                .+. ...+|...+....+.++++.|...++++++..|
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~----------------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~  165 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAI----------------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  165 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTS----------------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHH----------------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            455667777888999999999998876                222 234567777777888888888888888888888


Q ss_pred             CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy793          346 NNVKALFRRGRAQV-SMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQMRHHLNLEKMTYARM  409 (414)
Q Consensus       346 ~~~~a~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~  409 (414)
                      .+...+...|.... ..++.+.|...|+++++..|.+..++..+.......++.. ..|..|.+.
T Consensus       166 ~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~-~aR~~fe~a  229 (308)
T d2onda1         166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN-NTRVLFERV  229 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHH-HHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChH-HHHHHHHHH
Confidence            88888877776543 4578888888888888888888888877777766655433 344455543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=1.3e-05  Score=72.41  Aligned_cols=105  Identities=10%  Similarity=0.083  Sum_probs=86.9

Q ss_pred             hhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCH-HHHHH
Q psy793          275 FKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNV-KALFR  353 (414)
Q Consensus       275 ~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~-~a~~~  353 (414)
                      -..+.+++|...|++|+...               .|....+|...+..+..++++++|...++++|+..|.+. .+|..
T Consensus        75 ~~~~~~~~a~~i~~ral~~~---------------~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~  139 (308)
T d2onda1          75 NAKLFSDEAANIYERAISTL---------------LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQ  139 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHTTT---------------TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHH
T ss_pred             hcccchHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            34455677888888888642               244456888899999999999999999999999999764 57889


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          354 RGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       354 ~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      .+......++++.|...|+++++..|.+...+...+.+...
T Consensus       140 ~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~  180 (308)
T d2onda1         140 YMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            99999999999999999999999999998887776665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.71  E-value=0.00023  Score=61.97  Aligned_cols=105  Identities=17%  Similarity=0.178  Sum_probs=85.3

Q ss_pred             HHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHHHHH
Q psy793          264 IRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDD  339 (414)
Q Consensus       264 a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~  339 (414)
                      ++.+..+|..++.+++|.+|+.+|++|.+.                  .+..+++++|.+|..    ..++..|..+++.
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~------------------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~   63 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL------------------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAK   63 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC------------------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcc
Confidence            457889999999999999999999999865                  345788999999998    7789999999999


Q ss_pred             HHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q psy793          340 ILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAF  390 (414)
Q Consensus       340 al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~  390 (414)
                      +....  ++.+.+.+|.++..    ..+.+.|...++++.+..+  ..+...++.
T Consensus        64 a~~~~--~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~  114 (265)
T d1ouva_          64 ACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGG  114 (265)
T ss_dssp             HHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHH
T ss_pred             ccccc--ccchhhccccccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcc
Confidence            88665  77888888888765    4788999999999988654  344444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.50  E-value=0.0005  Score=53.35  Aligned_cols=82  Identities=15%  Similarity=0.080  Sum_probs=58.4

Q ss_pred             hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHHHHHHHhcCCCCHHHHH
Q psy793          277 LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLCDDILLMEPNNVKALF  352 (414)
Q Consensus       277 ~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~~~al~~~p~~~~a~~  352 (414)
                      ..++++|+..|++|.+.                  ..+.+++++|..|..    ..++.+|+.+++++.+.  .++.+.+
T Consensus        36 ~~~~~~a~~~~~~aa~~------------------g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~   95 (133)
T d1klxa_          36 QINKQKLFQYLSKACEL------------------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCL   95 (133)
T ss_dssp             TSCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             ccCHHHHHHHHhhhhcc------------------cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHH
Confidence            34666777777766643                  234567777877765    45678888888888765  4677888


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHhhC
Q psy793          353 RRGRAQVS----MNNFEQGLQDYEQALDLL  378 (414)
Q Consensus       353 ~~g~~~~~----lg~~~~A~~~~~~al~l~  378 (414)
                      ++|.+|..    ..++++|+..|++|.++.
T Consensus        96 ~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          96 ILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            88888776    467888888888887765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.50  E-value=0.00029  Score=61.34  Aligned_cols=104  Identities=16%  Similarity=0.174  Sum_probs=79.9

Q ss_pred             HHHHhhhHHhh----hcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHH----hhCHHHHHHHH
Q psy793          266 TIKNSGNEYFK----LNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLK----FKAYKRAINLC  337 (414)
Q Consensus       266 ~~~~~G~~~~~----~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~----l~~~~~A~~~~  337 (414)
                      .+...|..+..    ..+...+...++++.+.                  ....+++++|.+|..    .+++++|+.++
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~------------------g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~  205 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACDL------------------KDSPGCFNAGNMYHHGEGATKNFKEALARY  205 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------------------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhccccc------------------cccccccchhhhcccCcccccchhhhhhhH
Confidence            34556666664    45666677777666643                  346788999999988    67899999999


Q ss_pred             HHHHhcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q psy793          338 DDILLMEPNNVKALFRRGRAQVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFV  391 (414)
Q Consensus       338 ~~al~~~p~~~~a~~~~g~~~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~  391 (414)
                      +++.+.  .++.+++++|.+|+.    ..++++|+.+|++|.++.  +..+...|..+
T Consensus       206 ~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g--~~~A~~~l~~l  259 (265)
T d1ouva_         206 SKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG--AKGACDILKQL  259 (265)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT--CHHHHHHHHTC
T ss_pred             hhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc--CHHHHHHHHHH
Confidence            999988  479999999999986    458999999999999986  44555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.37  E-value=0.00035  Score=54.28  Aligned_cols=93  Identities=15%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             cCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Q psy793          278 NRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRA  357 (414)
Q Consensus       278 ~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~  357 (414)
                      .++++|+..|++|.+.                .  ...++++++.  ....++++|+.+++++.+.  .++.+.+.+|..
T Consensus         7 kd~~~A~~~~~kaa~~----------------g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~   64 (133)
T d1klxa_           7 KDLKKAIQYYVKACEL----------------N--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHT----------------T--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHC----------------C--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHh
Confidence            5889999999999875                1  2234455553  3467899999999999876  589999999999


Q ss_pred             HHH----cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Q psy793          358 QVS----MNNFEQGLQDYEQALDLLPNDQQILKEIAFVRKQ  394 (414)
Q Consensus       358 ~~~----lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~~  394 (414)
                      |..    ..++++|+..|+++.+.  +++.+...|+.++..
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             hhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHc
Confidence            986    57899999999999986  478888889888765

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.12  Score=36.59  Aligned_cols=65  Identities=8%  Similarity=0.033  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhccCCcHHHHHhhHHHHHHHHHHHHHHH
Q psy793          260 MEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYNQSQSKTQQKHFRSYYTAALLNMAAVQ  324 (414)
Q Consensus       260 ~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~  324 (414)
                      ....|..+..+|..+-+.|+|++|+.+|.+|++++-..............-...+.-|+++|..+
T Consensus        11 ~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~L   75 (93)
T d1wfda_          11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENI   75 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence            44568888999999999999999999999999987655444443333333344455566666554

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.17  E-value=0.82  Score=30.76  Aligned_cols=38  Identities=11%  Similarity=0.127  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhhc
Q psy793          261 EDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWYN  298 (414)
Q Consensus       261 ~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~~  298 (414)
                      +..|-.+--++..+.+.|.|++||+++++|..++...-
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~   42 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAM   42 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence            44577778899999999999999999999999976544

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.32  Score=32.92  Aligned_cols=39  Identities=15%  Similarity=0.145  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhhhHHhhhcCHHHHHHHHHHHHHHHHhh
Q psy793          259 QMEDVIRTIKNSGNEYFKLNRMHDAQRKYKKAVRYIKWY  297 (414)
Q Consensus       259 ~~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~Al~~~~~~  297 (414)
                      ..++.|..+..+|..+=+.|+|.+|+.+|.+|++++-..
T Consensus         6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~   44 (77)
T d1wr0a1           6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHV   44 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            345668888899999999999999999999999986543

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.38  E-value=2.6  Score=28.17  Aligned_cols=25  Identities=20%  Similarity=0.086  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHH
Q psy793          315 AALLNMAAVQLKFKAYKRAINLCDD  339 (414)
Q Consensus       315 ~~~~nla~~~~~l~~~~~A~~~~~~  339 (414)
                      ..+-.+|..+++.++|++||++.++
T Consensus         9 H~~~RrAer~l~~~rydeAIech~k   33 (83)
T d2crba1           9 HQQSRRADRLLAAGKYEEAISCHRK   33 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3455555555555555555555443

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.19  E-value=1.6  Score=38.27  Aligned_cols=81  Identities=16%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Q psy793          314 TAALLNMAAVQLKFKAYKRAINLCDDILLMEPNNVKALFRRGRAQVSMNNFEQGLQDYEQALDLLPNDQQILKEIAFVRK  393 (414)
Q Consensus       314 ~~~~~nla~~~~~l~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~lg~~~~A~~~~~~al~l~P~~~~~~~~l~~~~~  393 (414)
                      ..+|.....+++...+..-|.. +...+.+   ++.-.--.-..+...|.+++.+..++.++.+++.+......+..++.
T Consensus        69 ~~~~k~~~~~l~~~~e~~la~i-~~~~~~~---~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lya  144 (336)
T d1b89a_          69 TRTWKEVCFACVDGKEFRLAQM-CGLHIVV---HADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYS  144 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHH-TTTTTTT---CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHH-HHHHhhc---CHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHH
Confidence            3456666666666665554422 2222222   33333455667788899999999999999988889888888888876


Q ss_pred             HHHHH
Q psy793          394 QMRHH  398 (414)
Q Consensus       394 ~~~~~  398 (414)
                      +-...
T Consensus       145 k~~~~  149 (336)
T d1b89a_         145 KFKPQ  149 (336)
T ss_dssp             TTCHH
T ss_pred             HhChH
Confidence            65443